(22 intermediate revisions not shown) | |||
Line 25: | Line 25: | ||
==Data from publications== | ==Data from publications== | ||
- | The following is a list of data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list was current, as of | + | The following is a list of data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list was current, as of Nov. 5, 2017. |
#Lipton MS, Pasa-Tolic' L, Anderson GA, Anderson DJ, Auberry DL, Battista JR, Daly MJ, Fredrickson J, Hixson KK, Kostandarithes H, Masselon C, Markillie LM, Moore RJ, Romine MF, Shen Y, Stritmatter E, Tolic' N, Udseth HR, Venkateswaran A, Wong KK, Zhao R, Smith RD, (2002) "Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags." <i>Proc Natl Acad Sci U S A</i> <b>99</b>(17):11049–54; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/12177431 12177431]; doi: [https://dx.doi.org/10.1073/pnas.172170199 10.1073/pnas.172170199]; GPMDB: [http://gpmdb.org/data/keyword/12177431 498]. | #Lipton MS, Pasa-Tolic' L, Anderson GA, Anderson DJ, Auberry DL, Battista JR, Daly MJ, Fredrickson J, Hixson KK, Kostandarithes H, Masselon C, Markillie LM, Moore RJ, Romine MF, Shen Y, Stritmatter E, Tolic' N, Udseth HR, Venkateswaran A, Wong KK, Zhao R, Smith RD, (2002) "Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags." <i>Proc Natl Acad Sci U S A</i> <b>99</b>(17):11049–54; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/12177431 12177431]; doi: [https://dx.doi.org/10.1073/pnas.172170199 10.1073/pnas.172170199]; GPMDB: [http://gpmdb.org/data/keyword/12177431 498]. | ||
Line 559: | Line 559: | ||
#Thomae AW, Schade GO, Padeken J, Borath M, Vetter I, Kremmer E, Heun P, Imhof A, (2013) "A pair of centromeric proteins mediates reproductive isolation in Drosophila species." <i>Dev Cell</i> <b>27</b>(4):412–24; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24239514 24239514]; doi: [https://dx.doi.org/10.1016/j.devcel.2013.10.001 10.1016/j.devcel.2013.10.001]; GPMDB: [http://gpmdb.org/data/keyword/24239514 51]. | #Thomae AW, Schade GO, Padeken J, Borath M, Vetter I, Kremmer E, Heun P, Imhof A, (2013) "A pair of centromeric proteins mediates reproductive isolation in Drosophila species." <i>Dev Cell</i> <b>27</b>(4):412–24; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24239514 24239514]; doi: [https://dx.doi.org/10.1016/j.devcel.2013.10.001 10.1016/j.devcel.2013.10.001]; GPMDB: [http://gpmdb.org/data/keyword/24239514 51]. | ||
#Branca RM, Orre LM, Johansson HJ, Granholm V, Huss M, Pérez-Bercoff Å, Forshed J, Käll L, Lehtiö J, (2014) "HiRIEF LC-MS enables deep proteome coverage and unbiased proteogenomics." <i>Nat Methods</i> <b>11</b>(1):59–62; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24240322 24240322]; doi: [https://dx.doi.org/10.1038/nmeth.2732 10.1038/nmeth.2732]; GPMDB: [http://gpmdb.org/data/keyword/24240322 2592]. | #Branca RM, Orre LM, Johansson HJ, Granholm V, Huss M, Pérez-Bercoff Å, Forshed J, Käll L, Lehtiö J, (2014) "HiRIEF LC-MS enables deep proteome coverage and unbiased proteogenomics." <i>Nat Methods</i> <b>11</b>(1):59–62; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24240322 24240322]; doi: [https://dx.doi.org/10.1038/nmeth.2732 10.1038/nmeth.2732]; GPMDB: [http://gpmdb.org/data/keyword/24240322 2592]. | ||
+ | #Schaab C, Oppermann FS, Klammer M, Pfeifer H, Tebbe A, Oellerich T, Krauter J, Levis M, Perl AE, Daub H, Steffen B, Godl K, Serve H, (2014) "Global phosphoproteome analysis of human bone marrow reveals predictive phosphorylation markers for the treatment of acute myeloid leukemia with quizartinib." <i>Leukemia</i> <b>28</b>(3):716–9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24247654 24247654]; doi: [https://dx.doi.org/10.1038/leu.2013.347 10.1038/leu.2013.347]; GPMDB: [http://gpmdb.org/data/keyword/24247654 22]. | ||
#Drake JM, Graham NA, Lee JK, Stoyanova T, Faltermeier CM, Sud S, Titz B, Huang J, Pienta KJ, Graeber TG, Witte ON, (2013) "Metastatic castration-resistant prostate cancer reveals intrapatient similarity and interpatient heterogeneity of therapeutic kinase targets." <i>Proc Natl Acad Sci U S A</i> <b>110</b>(49):E4762–9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24248375 24248375]; doi: [https://dx.doi.org/10.1073/pnas.1319948110 10.1073/pnas.1319948110]; GPMDB: [http://gpmdb.org/data/keyword/24248375 87]. | #Drake JM, Graham NA, Lee JK, Stoyanova T, Faltermeier CM, Sud S, Titz B, Huang J, Pienta KJ, Graeber TG, Witte ON, (2013) "Metastatic castration-resistant prostate cancer reveals intrapatient similarity and interpatient heterogeneity of therapeutic kinase targets." <i>Proc Natl Acad Sci U S A</i> <b>110</b>(49):E4762–9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24248375 24248375]; doi: [https://dx.doi.org/10.1073/pnas.1319948110 10.1073/pnas.1319948110]; GPMDB: [http://gpmdb.org/data/keyword/24248375 87]. | ||
#Chang C, Li L, Zhang C, Wu S, Guo K, Zi J, Chen Z, Jiang J, Ma J, Yu Q, Fan F, Qin P, Han M, Su N, Chen T, Wang K, Zhai L, Zhang T, Ying W, Xu Z, Zhang Y, Liu Y, Liu X, Zhong F, Shen H, Wang Q, Hou G, Zhao H, Li G, Liu S, Gu W, Wang G, Wang T, Zhang G, Qian X, Li N, He QY, Lin L, Yang P, Zhu Y, He F, Xu P, (2014) "Systematic analyses of the transcriptome, translatome, and proteome provide a global view and potential strategy for the C-HPP." <i>J Proteome Res</i> <b>13</b>(1):38–49; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24256510 24256510]; doi: [https://dx.doi.org/10.1021/pr4009018 10.1021/pr4009018]; GPMDB: [http://gpmdb.org/data/keyword/24256510 216]. | #Chang C, Li L, Zhang C, Wu S, Guo K, Zi J, Chen Z, Jiang J, Ma J, Yu Q, Fan F, Qin P, Han M, Su N, Chen T, Wang K, Zhai L, Zhang T, Ying W, Xu Z, Zhang Y, Liu Y, Liu X, Zhong F, Shen H, Wang Q, Hou G, Zhao H, Li G, Liu S, Gu W, Wang G, Wang T, Zhang G, Qian X, Li N, He QY, Lin L, Yang P, Zhu Y, He F, Xu P, (2014) "Systematic analyses of the transcriptome, translatome, and proteome provide a global view and potential strategy for the C-HPP." <i>J Proteome Res</i> <b>13</b>(1):38–49; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24256510 24256510]; doi: [https://dx.doi.org/10.1021/pr4009018 10.1021/pr4009018]; GPMDB: [http://gpmdb.org/data/keyword/24256510 216]. | ||
Line 911: | Line 912: | ||
#Higgins R, Gendron JM, Rising L, Mak R, Webb K, Kaiser SE, Zuzow N, Riviere P, Yang B, Fenech E, Tang X, Lindsay SA, Christianson JC, Hampton RY, Wasserman SA, Bennett EJ, (2015) "The Unfolded Protein Response Triggers Site-Specific Regulatory Ubiquitylation of 40S Ribosomal Proteins." <i>Mol Cell</i> <b>59</b>(1):35–49; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26051182 26051182]; doi: [https://dx.doi.org/10.1016/j.molcel.2015.04.026 10.1016/j.molcel.2015.04.026]; GPMDB: [http://gpmdb.org/data/keyword/26051182 54]. | #Higgins R, Gendron JM, Rising L, Mak R, Webb K, Kaiser SE, Zuzow N, Riviere P, Yang B, Fenech E, Tang X, Lindsay SA, Christianson JC, Hampton RY, Wasserman SA, Bennett EJ, (2015) "The Unfolded Protein Response Triggers Site-Specific Regulatory Ubiquitylation of 40S Ribosomal Proteins." <i>Mol Cell</i> <b>59</b>(1):35–49; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26051182 26051182]; doi: [https://dx.doi.org/10.1016/j.molcel.2015.04.026 10.1016/j.molcel.2015.04.026]; GPMDB: [http://gpmdb.org/data/keyword/26051182 54]. | ||
#Sethi MK, Thaysen-Andersen M, Kim H, Park CK, Baker MS, Packer NH, Paik YK, Hancock WS, Fanayan S, (2015) "Quantitative proteomic analysis of paired colorectal cancer and non-tumorigenic tissues reveals signature proteins and perturbed pathways involved in CRC progression and metastasis." <i>J Proteomics</i> <b>126</b>:54–67; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26054784 26054784]; doi: [https://dx.doi.org/10.1016/j.jprot.2015.05.037 10.1016/j.jprot.2015.05.037]; GPMDB: [http://gpmdb.org/data/keyword/26054784 15]. | #Sethi MK, Thaysen-Andersen M, Kim H, Park CK, Baker MS, Packer NH, Paik YK, Hancock WS, Fanayan S, (2015) "Quantitative proteomic analysis of paired colorectal cancer and non-tumorigenic tissues reveals signature proteins and perturbed pathways involved in CRC progression and metastasis." <i>J Proteomics</i> <b>126</b>:54–67; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26054784 26054784]; doi: [https://dx.doi.org/10.1016/j.jprot.2015.05.037 10.1016/j.jprot.2015.05.037]; GPMDB: [http://gpmdb.org/data/keyword/26054784 15]. | ||
- | #Cifani P, Kirik U, Waldemarson S, James P, (2015) "Molecular Portrait of Breast-Cancer-Derived Cell Lines Reveals Poor Similarity with Tumors." <i>J Proteome Res</i> <b>14</b>(7):2819–27; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26055192 26055192]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00375 10.1021/acs.jproteome.5b00375]; GPMDB: [http://gpmdb.org/data/keyword/26055192 | + | #Cifani P, Kirik U, Waldemarson S, James P, (2015) "Molecular Portrait of Breast-Cancer-Derived Cell Lines Reveals Poor Similarity with Tumors." <i>J Proteome Res</i> <b>14</b>(7):2819–27; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26055192 26055192]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00375 10.1021/acs.jproteome.5b00375]; GPMDB: [http://gpmdb.org/data/keyword/26055192 439]. |
#McCloy RA, Parker BL, Rogers S, Chaudhuri R, Gayevskiy V, Hoffman NJ, Ali N, Watkins DN, Daly RJ, James DE, Lorca T, Castro A, Burgess A, (2015) "Global Phosphoproteomic Mapping of Early Mitotic Exit in Human Cells Identifies Novel Substrate Dephosphorylation Motifs." <i>Mol Cell Proteomics</i> <b>14</b>(8):2194–212; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26055452 26055452]; doi: [https://dx.doi.org/10.1074/mcp.M114.046938 10.1074/mcp.M114.046938]; GPMDB: [http://gpmdb.org/data/keyword/26055452 29]. | #McCloy RA, Parker BL, Rogers S, Chaudhuri R, Gayevskiy V, Hoffman NJ, Ali N, Watkins DN, Daly RJ, James DE, Lorca T, Castro A, Burgess A, (2015) "Global Phosphoproteomic Mapping of Early Mitotic Exit in Human Cells Identifies Novel Substrate Dephosphorylation Motifs." <i>Mol Cell Proteomics</i> <b>14</b>(8):2194–212; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26055452 26055452]; doi: [https://dx.doi.org/10.1074/mcp.M114.046938 10.1074/mcp.M114.046938]; GPMDB: [http://gpmdb.org/data/keyword/26055452 29]. | ||
#Mulvey CM, Schröter C, Gatto L, Dikicioglu D, Fidaner IB, Christoforou A, Deery MJ, Cho LT, Niakan KK, Martinez-Arias A, Lilley KS, (2015) "Dynamic Proteomic Profiling of Extra-Embryonic Endoderm Differentiation in Mouse Embryonic Stem Cells." <i>Stem Cells</i> <b>33</b>(9):2712–25; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26059426 26059426]; doi: [https://dx.doi.org/10.1002/stem.2067 10.1002/stem.2067]; GPMDB: [http://gpmdb.org/data/keyword/26059426 7]. | #Mulvey CM, Schröter C, Gatto L, Dikicioglu D, Fidaner IB, Christoforou A, Deery MJ, Cho LT, Niakan KK, Martinez-Arias A, Lilley KS, (2015) "Dynamic Proteomic Profiling of Extra-Embryonic Endoderm Differentiation in Mouse Embryonic Stem Cells." <i>Stem Cells</i> <b>33</b>(9):2712–25; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26059426 26059426]; doi: [https://dx.doi.org/10.1002/stem.2067 10.1002/stem.2067]; GPMDB: [http://gpmdb.org/data/keyword/26059426 7]. | ||
Line 917: | Line 918: | ||
#Murphy JP, Stepanova E, Everley RA, Paulo JA, Gygi SP, (2015) "Comprehensive Temporal Protein Dynamics during the Diauxic Shift in Saccharomyces cerevisiae." <i>Mol Cell Proteomics</i> <b>14</b>(9):2454–65; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26077900 26077900]; doi: [https://dx.doi.org/10.1074/mcp.M114.045849 10.1074/mcp.M114.045849]; GPMDB: [http://gpmdb.org/data/keyword/26077900 66]. | #Murphy JP, Stepanova E, Everley RA, Paulo JA, Gygi SP, (2015) "Comprehensive Temporal Protein Dynamics during the Diauxic Shift in Saccharomyces cerevisiae." <i>Mol Cell Proteomics</i> <b>14</b>(9):2454–65; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26077900 26077900]; doi: [https://dx.doi.org/10.1074/mcp.M114.045849 10.1074/mcp.M114.045849]; GPMDB: [http://gpmdb.org/data/keyword/26077900 66]. | ||
#Wiśniewski JR, Gizak A, Rakus D, (2015) "Integrating Proteomics and Enzyme Kinetics Reveals Tissue-Specific Types of the Glycolytic and Gluconeogenic Pathways." <i>J Proteome Res</i> <b>14</b>(8):3263–73; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26080680 26080680]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00276 10.1021/acs.jproteome.5b00276]; GPMDB: [http://gpmdb.org/data/keyword/26080680 18]. | #Wiśniewski JR, Gizak A, Rakus D, (2015) "Integrating Proteomics and Enzyme Kinetics Reveals Tissue-Specific Types of the Glycolytic and Gluconeogenic Pathways." <i>J Proteome Res</i> <b>14</b>(8):3263–73; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26080680 26080680]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00276 10.1021/acs.jproteome.5b00276]; GPMDB: [http://gpmdb.org/data/keyword/26080680 18]. | ||
+ | #Yagoub D, Hart-Smith G, Moecking J, Erce MA, Wilkins MR, (2015) "Yeast proteins Gar1p, Nop1p, Npl3p, Nsr1p, and Rps2p are natively methylated and are substrates of the arginine methyltransferase Hmt1p." <i>Proteomics</i> <b>15</b>(18):3209–18; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26081071 26081071]; doi: [https://dx.doi.org/10.1002/pmic.201500075 10.1002/pmic.201500075]; GPMDB: [http://gpmdb.org/data/keyword/26081071 7]. | ||
#Mui MZ, Zhou Y, Blanchette P, Chughtai N, Knight JF, Gruosso T, Papadakis AI, Huang S, Park M, Gingras AC, Branton PE, (2015) "The Human Adenovirus Type 5 E4orf4 Protein Targets Two Phosphatase Regulators of the Hippo Signaling Pathway." <i>J Virol</i> <b>89</b>(17):8855–70; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26085163 26085163]; doi: [https://dx.doi.org/10.1128/JVI.03710-14 10.1128/JVI.03710-14]; GPMDB: [http://gpmdb.org/data/keyword/26085163 16]. | #Mui MZ, Zhou Y, Blanchette P, Chughtai N, Knight JF, Gruosso T, Papadakis AI, Huang S, Park M, Gingras AC, Branton PE, (2015) "The Human Adenovirus Type 5 E4orf4 Protein Targets Two Phosphatase Regulators of the Hippo Signaling Pathway." <i>J Virol</i> <b>89</b>(17):8855–70; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26085163 26085163]; doi: [https://dx.doi.org/10.1128/JVI.03710-14 10.1128/JVI.03710-14]; GPMDB: [http://gpmdb.org/data/keyword/26085163 16]. | ||
#Cehofski LJ, Kruse A, Kjærgaard B, Stensballe A, Honoré B, Vorum H, (2015) "Proteins involved in focal adhesion signaling pathways are differentially regulated in experimental branch retinal vein occlusion." <i>Exp Eye Res</i> <b>138</b>:87–95; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26086079 26086079]; doi: [https://dx.doi.org/10.1016/j.exer.2015.06.011 10.1016/j.exer.2015.06.011]; GPMDB: [http://gpmdb.org/data/keyword/26086079 48]. | #Cehofski LJ, Kruse A, Kjærgaard B, Stensballe A, Honoré B, Vorum H, (2015) "Proteins involved in focal adhesion signaling pathways are differentially regulated in experimental branch retinal vein occlusion." <i>Exp Eye Res</i> <b>138</b>:87–95; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26086079 26086079]; doi: [https://dx.doi.org/10.1016/j.exer.2015.06.011 10.1016/j.exer.2015.06.011]; GPMDB: [http://gpmdb.org/data/keyword/26086079 48]. | ||
Line 988: | Line 990: | ||
#Wu X, Zahari MS, Renuse S, Nirujogi RS, Kim MS, Manda SS, Stearns V, Gabrielson E, Sukumar S, Pandey A, (2015) "Phosphoproteomic Analysis Identifies Focal Adhesion Kinase 2 (FAK2) as a Potential Therapeutic Target for Tamoxifen Resistance in Breast Cancer." <i>Mol Cell Proteomics</i> <b>14</b>(11):2887–900; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26330541 26330541]; doi: [https://dx.doi.org/10.1074/mcp.M115.050484 10.1074/mcp.M115.050484]; GPMDB: [http://gpmdb.org/data/keyword/26330541 29]. | #Wu X, Zahari MS, Renuse S, Nirujogi RS, Kim MS, Manda SS, Stearns V, Gabrielson E, Sukumar S, Pandey A, (2015) "Phosphoproteomic Analysis Identifies Focal Adhesion Kinase 2 (FAK2) as a Potential Therapeutic Target for Tamoxifen Resistance in Breast Cancer." <i>Mol Cell Proteomics</i> <b>14</b>(11):2887–900; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26330541 26330541]; doi: [https://dx.doi.org/10.1074/mcp.M115.050484 10.1074/mcp.M115.050484]; GPMDB: [http://gpmdb.org/data/keyword/26330541 29]. | ||
#Duhamel M, Rodet F, Delhem N, Vanden Abeele F, Kobeissy F, Nataf S, Pays L, Desjardins R, Gagnon H, Wisztorski M, Fournier I, Day R, Salzet M, (2015) "Molecular Consequences of Proprotein Convertase 1/3 (PC1/3) Inhibition in Macrophages for Application to Cancer Immunotherapy: A Proteomic Study." <i>Mol Cell Proteomics</i> <b>14</b>(11):2857–77; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26330543 26330543]; doi: [https://dx.doi.org/10.1074/mcp.M115.052480 10.1074/mcp.M115.052480]; GPMDB: [http://gpmdb.org/data/keyword/26330543 18]. | #Duhamel M, Rodet F, Delhem N, Vanden Abeele F, Kobeissy F, Nataf S, Pays L, Desjardins R, Gagnon H, Wisztorski M, Fournier I, Day R, Salzet M, (2015) "Molecular Consequences of Proprotein Convertase 1/3 (PC1/3) Inhibition in Macrophages for Application to Cancer Immunotherapy: A Proteomic Study." <i>Mol Cell Proteomics</i> <b>14</b>(11):2857–77; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26330543 26330543]; doi: [https://dx.doi.org/10.1074/mcp.M115.052480 10.1074/mcp.M115.052480]; GPMDB: [http://gpmdb.org/data/keyword/26330543 18]. | ||
+ | #Liebensteiner MG, Pinkse MW, Nijsse B, Verhaert PD, Tsesmetzis N, Stams AJ, Lomans BP, (2015) "Perchlorate and chlorate reduction by the Crenarchaeon Aeropyrum pernix and two thermophilic Firmicutes." <i>Environ Microbiol Rep</i> <b>7</b>(6):936–45; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26332065 26332065]; doi: [https://dx.doi.org/10.1111/1758-2229.12335 10.1111/1758-2229.12335]; GPMDB: [http://gpmdb.org/data/keyword/26332065 12]. | ||
#Lluch-Senar M, Cozzuto L, Cano J, Delgado J, Llórens-Rico V, Pereyre S, Bebear C, Serrano L, (2015) "Comparative "-omics" in Mycoplasma pneumoniae Clinical Isolates Reveals Key Virulence Factors." <i>PLoS One</i> <b>10</b>(9):e0137354; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26335586 26335586]; doi: [https://dx.doi.org/10.1371/journal.pone.0137354 10.1371/journal.pone.0137354]; GPMDB: [http://gpmdb.org/data/keyword/26335586 25]. | #Lluch-Senar M, Cozzuto L, Cano J, Delgado J, Llórens-Rico V, Pereyre S, Bebear C, Serrano L, (2015) "Comparative "-omics" in Mycoplasma pneumoniae Clinical Isolates Reveals Key Virulence Factors." <i>PLoS One</i> <b>10</b>(9):e0137354; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26335586 26335586]; doi: [https://dx.doi.org/10.1371/journal.pone.0137354 10.1371/journal.pone.0137354]; GPMDB: [http://gpmdb.org/data/keyword/26335586 25]. | ||
#White CH, Johnston HE, Moesker B, Manousopoulou A, Margolis DM, Richman DD, Spina CA, Garbis SD, Woelk CH, Beliakova-Bethell N, (2015) "Mixed effects of suberoylanilide hydroxamic acid (SAHA) on the host transcriptome and proteome and their implications for HIV reactivation from latency." <i>Antiviral Res</i> <b>123</b>:78–85; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26343910 26343910]; doi: [https://dx.doi.org/10.1016/j.antiviral.2015.09.002 10.1016/j.antiviral.2015.09.002]; GPMDB: [http://gpmdb.org/data/keyword/26343910 172]. | #White CH, Johnston HE, Moesker B, Manousopoulou A, Margolis DM, Richman DD, Spina CA, Garbis SD, Woelk CH, Beliakova-Bethell N, (2015) "Mixed effects of suberoylanilide hydroxamic acid (SAHA) on the host transcriptome and proteome and their implications for HIV reactivation from latency." <i>Antiviral Res</i> <b>123</b>:78–85; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26343910 26343910]; doi: [https://dx.doi.org/10.1016/j.antiviral.2015.09.002 10.1016/j.antiviral.2015.09.002]; GPMDB: [http://gpmdb.org/data/keyword/26343910 172]. | ||
Line 1,007: | Line 1,010: | ||
#Liu T, Tian CF, Chen WX, (2015) "Site-Specific Ser/Thr/Tyr Phosphoproteome of Sinorhizobium meliloti at Stationary Phase." <i>PLoS One</i> <b>10</b>(9):e0139143; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26401955 26401955]; doi: [https://dx.doi.org/10.1371/journal.pone.0139143 10.1371/journal.pone.0139143]; GPMDB: [http://gpmdb.org/data/keyword/26401955 2]. | #Liu T, Tian CF, Chen WX, (2015) "Site-Specific Ser/Thr/Tyr Phosphoproteome of Sinorhizobium meliloti at Stationary Phase." <i>PLoS One</i> <b>10</b>(9):e0139143; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26401955 26401955]; doi: [https://dx.doi.org/10.1371/journal.pone.0139143 10.1371/journal.pone.0139143]; GPMDB: [http://gpmdb.org/data/keyword/26401955 2]. | ||
#Li S, Dislich B, Brakebusch CH, Lichtenthaler SF, Brocker T, (2015) "Control of Homeostasis and Dendritic Cell Survival by the GTPase RhoA." <i>J Immunol</i> <b>195</b>(9):4244–56; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26408665 26408665]; doi: [https://dx.doi.org/10.4049/jimmunol.1500676 10.4049/jimmunol.1500676]; GPMDB: [http://gpmdb.org/data/keyword/26408665 60]. | #Li S, Dislich B, Brakebusch CH, Lichtenthaler SF, Brocker T, (2015) "Control of Homeostasis and Dendritic Cell Survival by the GTPase RhoA." <i>J Immunol</i> <b>195</b>(9):4244–56; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26408665 26408665]; doi: [https://dx.doi.org/10.4049/jimmunol.1500676 10.4049/jimmunol.1500676]; GPMDB: [http://gpmdb.org/data/keyword/26408665 60]. | ||
- | #Glatter T, Ahrné E, Schmidt A, (2015) "Comparison of Different Sample Preparation Protocols Reveals Lysis Buffer-Specific Extraction Biases in Gram-Negative Bacteria and Human Cells." <i>J Proteome Res</i> <b>14</b>(11):4472–85; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26412744 26412744]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00654 10.1021/acs.jproteome.5b00654]; GPMDB: [http://gpmdb.org/data/keyword/26412744 | + | #Beckley JR, Chen JS, Yang Y, Peng J, Gould KL, (2015) "A Degenerate Cohort of Yeast Membrane Trafficking DUBs Mediates Cell Polarity and Survival." <i>Mol Cell Proteomics</i> <b>14</b>(12):3132–41; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26412298 26412298]; doi: [https://dx.doi.org/10.1074/mcp.M115.050039 10.1074/mcp.M115.050039]; GPMDB: [http://gpmdb.org/data/keyword/26412298 246]. |
+ | #Glatter T, Ahrné E, Schmidt A, (2015) "Comparison of Different Sample Preparation Protocols Reveals Lysis Buffer-Specific Extraction Biases in Gram-Negative Bacteria and Human Cells." <i>J Proteome Res</i> <b>14</b>(11):4472–85; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26412744 26412744]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00654 10.1021/acs.jproteome.5b00654]; GPMDB: [http://gpmdb.org/data/keyword/26412744 901]. | ||
#Hadley KC, Rakhit R, Guo H, Sun Y, Jonkman JE, McLaurin J, Hazrati LN, Emili A, Chakrabartty A, (2015) "Determining composition of micron-scale protein deposits in neurodegenerative disease by spatially targeted optical microproteomics." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26418743 26418743]; doi: [https://dx.doi.org/10.7554/eLife.09579 10.7554/eLife.09579]; GPMDB: [http://gpmdb.org/data/keyword/26418743 12]. | #Hadley KC, Rakhit R, Guo H, Sun Y, Jonkman JE, McLaurin J, Hazrati LN, Emili A, Chakrabartty A, (2015) "Determining composition of micron-scale protein deposits in neurodegenerative disease by spatially targeted optical microproteomics." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26418743 26418743]; doi: [https://dx.doi.org/10.7554/eLife.09579 10.7554/eLife.09579]; GPMDB: [http://gpmdb.org/data/keyword/26418743 12]. | ||
#Gallart-Palau X, Serra A, Wong AS, Sandin S, Lai MK, Chen CP, Kon OL, Sze SK, (2015) "Extracellular vesicles are rapidly purified from human plasma by PRotein Organic Solvent PRecipitation (PROSPR)." <i>Sci Rep</i> <b>5</b>:14664; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26419333 26419333]; doi: [https://dx.doi.org/10.1038/srep14664 10.1038/srep14664]; GPMDB: [http://gpmdb.org/data/keyword/26419333 172]. | #Gallart-Palau X, Serra A, Wong AS, Sandin S, Lai MK, Chen CP, Kon OL, Sze SK, (2015) "Extracellular vesicles are rapidly purified from human plasma by PRotein Organic Solvent PRecipitation (PROSPR)." <i>Sci Rep</i> <b>5</b>:14664; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26419333 26419333]; doi: [https://dx.doi.org/10.1038/srep14664 10.1038/srep14664]; GPMDB: [http://gpmdb.org/data/keyword/26419333 172]. | ||
Line 1,137: | Line 1,141: | ||
#Kowal J, Arras G, Colombo M, Jouve M, Morath JP, Primdal-Bengtson B, Dingli F, Loew D, Tkach M, Théry C, (2016) "Proteomic comparison defines novel markers to characterize heterogeneous populations of extracellular vesicle subtypes." <i>Proc Natl Acad Sci U S A</i> <b>113</b>(8):E968–77; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26858453 26858453]; doi: [https://dx.doi.org/10.1073/pnas.1521230113 10.1073/pnas.1521230113]; GPMDB: [http://gpmdb.org/data/keyword/26858453 56]. | #Kowal J, Arras G, Colombo M, Jouve M, Morath JP, Primdal-Bengtson B, Dingli F, Loew D, Tkach M, Théry C, (2016) "Proteomic comparison defines novel markers to characterize heterogeneous populations of extracellular vesicle subtypes." <i>Proc Natl Acad Sci U S A</i> <b>113</b>(8):E968–77; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26858453 26858453]; doi: [https://dx.doi.org/10.1073/pnas.1521230113 10.1073/pnas.1521230113]; GPMDB: [http://gpmdb.org/data/keyword/26858453 56]. | ||
#Locard-Paulet M, Lim L, Veluscek G, McMahon K, Sinclair J, van Weverwijk A, Worboys JD, Yuan Y, Isacke CM, Jørgensen C, (2016) "Phosphoproteomic analysis of interacting tumor and endothelial cells identifies regulatory mechanisms of transendothelial migration." <i>Sci Signal</i> <b>9</b>(414):ra15; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26861043 26861043]; doi: [https://dx.doi.org/10.1126/scisignal.aac5820 10.1126/scisignal.aac5820]; GPMDB: [http://gpmdb.org/data/keyword/26861043 76]. | #Locard-Paulet M, Lim L, Veluscek G, McMahon K, Sinclair J, van Weverwijk A, Worboys JD, Yuan Y, Isacke CM, Jørgensen C, (2016) "Phosphoproteomic analysis of interacting tumor and endothelial cells identifies regulatory mechanisms of transendothelial migration." <i>Sci Signal</i> <b>9</b>(414):ra15; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26861043 26861043]; doi: [https://dx.doi.org/10.1126/scisignal.aac5820 10.1126/scisignal.aac5820]; GPMDB: [http://gpmdb.org/data/keyword/26861043 76]. | ||
- | #Prior KK, Wittig I, Leisegang MS, Groenendyk J, Weissmann N, Michalak M, Jansen-Dürr P, Shah AM, Brandes RP, (2016) "The Endoplasmic Reticulum Chaperone Calnexin Is a NADPH Oxidase NOX4 Interacting Protein." <i>J Biol Chem</i> <b>291</b>(13):7045–59; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26861875 26861875]; doi: [https://dx.doi.org/10.1074/jbc.M115.710772 10.1074/jbc.M115.710772]; GPMDB: [http://gpmdb.org/data/keyword/26861875 | + | #Prior KK, Wittig I, Leisegang MS, Groenendyk J, Weissmann N, Michalak M, Jansen-Dürr P, Shah AM, Brandes RP, (2016) "The Endoplasmic Reticulum Chaperone Calnexin Is a NADPH Oxidase NOX4 Interacting Protein." <i>J Biol Chem</i> <b>291</b>(13):7045–59; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26861875 26861875]; doi: [https://dx.doi.org/10.1074/jbc.M115.710772 10.1074/jbc.M115.710772]; GPMDB: [http://gpmdb.org/data/keyword/26861875 120]. |
#Ramus C, Hovasse A, Marcellin M, Hesse AM, Mouton-Barbosa E, Bouyssié D, Vaca S, Carapito C, Chaoui K, Bruley C, Garin J, Cianférani S, Ferro M, Dorssaeler AV, Burlet-Schiltz O, Schaeffer C, Couté Y, Gonzalez de Peredo A, (2015) "Spiked proteomic standard dataset for testing label-free quantitative software and statistical methods." <i>Data Brief</i> <b>6</b>:286–94; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26862574 26862574]; doi: [https://dx.doi.org/10.1016/j.dib.2015.11.063 10.1016/j.dib.2015.11.063]; GPMDB: [http://gpmdb.org/data/keyword/26862574 27]. | #Ramus C, Hovasse A, Marcellin M, Hesse AM, Mouton-Barbosa E, Bouyssié D, Vaca S, Carapito C, Chaoui K, Bruley C, Garin J, Cianférani S, Ferro M, Dorssaeler AV, Burlet-Schiltz O, Schaeffer C, Couté Y, Gonzalez de Peredo A, (2015) "Spiked proteomic standard dataset for testing label-free quantitative software and statistical methods." <i>Data Brief</i> <b>6</b>:286–94; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26862574 26862574]; doi: [https://dx.doi.org/10.1016/j.dib.2015.11.063 10.1016/j.dib.2015.11.063]; GPMDB: [http://gpmdb.org/data/keyword/26862574 27]. | ||
#Sahebekhtiari N, Thomsen MM, Sloth JJ, Stenbroen V, Zeviani M, Gregersen N, Viscomi C, Palmfeldt J, (2016) "Quantitative proteomics suggests metabolic reprogramming during ETHE1 deficiency." <i>Proteomics</i> <b>16</b>(7):1166–76; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26867521 26867521]; doi: [https://dx.doi.org/10.1002/pmic.201500336 10.1002/pmic.201500336]; GPMDB: [http://gpmdb.org/data/keyword/26867521 50]. | #Sahebekhtiari N, Thomsen MM, Sloth JJ, Stenbroen V, Zeviani M, Gregersen N, Viscomi C, Palmfeldt J, (2016) "Quantitative proteomics suggests metabolic reprogramming during ETHE1 deficiency." <i>Proteomics</i> <b>16</b>(7):1166–76; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26867521 26867521]; doi: [https://dx.doi.org/10.1002/pmic.201500336 10.1002/pmic.201500336]; GPMDB: [http://gpmdb.org/data/keyword/26867521 50]. | ||
Line 1,259: | Line 1,263: | ||
#Chaubey PM, Hofstetter L, Roschitzki B, Stieger B, (2016) "Proteomic Analysis of the Rat Canalicular Membrane Reveals Expression of a Complex System of P4-ATPases in Liver." <i>PLoS One</i> <b>11</b>(6):e0158033; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27347675 27347675]; doi: [https://dx.doi.org/10.1371/journal.pone.0158033 10.1371/journal.pone.0158033]; GPMDB: [http://gpmdb.org/data/keyword/27347675 60]. | #Chaubey PM, Hofstetter L, Roschitzki B, Stieger B, (2016) "Proteomic Analysis of the Rat Canalicular Membrane Reveals Expression of a Complex System of P4-ATPases in Liver." <i>PLoS One</i> <b>11</b>(6):e0158033; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27347675 27347675]; doi: [https://dx.doi.org/10.1371/journal.pone.0158033 10.1371/journal.pone.0158033]; GPMDB: [http://gpmdb.org/data/keyword/27347675 60]. | ||
#Bespyatykh J, Shitikov E, Butenko I, Altukhov I, Alexeev D, Mokrousov I, Dogonadze M, Zhuravlev V, Yablonsky P, Ilina E, Govorun V, (2016) "Proteome analysis of the Mycobacterium tuberculosis Beijing B0/W148 cluster." <i>Sci Rep</i> <b>6</b>:28985; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27356881 27356881]; doi: [https://dx.doi.org/10.1038/srep28985 10.1038/srep28985]; GPMDB: [http://gpmdb.org/data/keyword/27356881 23]. | #Bespyatykh J, Shitikov E, Butenko I, Altukhov I, Alexeev D, Mokrousov I, Dogonadze M, Zhuravlev V, Yablonsky P, Ilina E, Govorun V, (2016) "Proteome analysis of the Mycobacterium tuberculosis Beijing B0/W148 cluster." <i>Sci Rep</i> <b>6</b>:28985; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27356881 27356881]; doi: [https://dx.doi.org/10.1038/srep28985 10.1038/srep28985]; GPMDB: [http://gpmdb.org/data/keyword/27356881 23]. | ||
+ | #Monks J, Dzieciatkowska M, Bales ES, Orlicky DJ, Wright RM, McManaman JL, (2016) "Xanthine oxidoreductase mediates membrane docking of milk-fat droplets but is not essential for apocrine lipid secretion." <i>J Physiol</i> <b>594</b>(20):5899–5921; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27357166 27357166]; doi: [https://dx.doi.org/10.1113/JP272390 10.1113/JP272390]; GPMDB: [http://gpmdb.org/data/keyword/27357166 16]. | ||
#Rinschen MM, Schroeter CB, Koehler S, Ising C, Schermer B, Kann M, Benzing T, Brinkkoetter PT, (2016) "Quantitative deep mapping of the cultured podocyte proteome uncovers shifts in proteostatic mechanisms during differentiation." <i>Am J Physiol Cell Physiol</i> <b>311</b>(3):C404–17; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27357545 27357545]; doi: [https://dx.doi.org/10.1152/ajpcell.00121.2016 10.1152/ajpcell.00121.2016]; GPMDB: [http://gpmdb.org/data/keyword/27357545 3]. | #Rinschen MM, Schroeter CB, Koehler S, Ising C, Schermer B, Kann M, Benzing T, Brinkkoetter PT, (2016) "Quantitative deep mapping of the cultured podocyte proteome uncovers shifts in proteostatic mechanisms during differentiation." <i>Am J Physiol Cell Physiol</i> <b>311</b>(3):C404–17; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27357545 27357545]; doi: [https://dx.doi.org/10.1152/ajpcell.00121.2016 10.1152/ajpcell.00121.2016]; GPMDB: [http://gpmdb.org/data/keyword/27357545 3]. | ||
#Dudekula K, Le Bihan T, (2016) "Data from quantitative label free proteomics analysis of rat spleen." <i>Data Brief</i> <b>8</b>:494–500; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27358910 27358910]; doi: [https://dx.doi.org/10.1016/j.dib.2016.05.058 10.1016/j.dib.2016.05.058]; GPMDB: [http://gpmdb.org/data/keyword/27358910 17]. | #Dudekula K, Le Bihan T, (2016) "Data from quantitative label free proteomics analysis of rat spleen." <i>Data Brief</i> <b>8</b>:494–500; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27358910 27358910]; doi: [https://dx.doi.org/10.1016/j.dib.2016.05.058 10.1016/j.dib.2016.05.058]; GPMDB: [http://gpmdb.org/data/keyword/27358910 17]. | ||
Line 1,303: | Line 1,308: | ||
#Naboulsi W, Bracht T, Megger DA, Reis H, Ahrens M, Turewicz M, Eisenacher M, Tautges S, Canbay AE, Meyer HE, Weber F, Baba HA, Sitek B, (2016) "Quantitative proteome analysis reveals the correlation between endocytosis-associated proteins and hepatocellular carcinoma dedifferentiation." <i>Biochim Biophys Acta</i> <b>1864</b>(11):1579–85; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27519163 27519163]; doi: [https://dx.doi.org/10.1016/j.bbapap.2016.08.005 10.1016/j.bbapap.2016.08.005]; GPMDB: [http://gpmdb.org/data/keyword/27519163 36]. | #Naboulsi W, Bracht T, Megger DA, Reis H, Ahrens M, Turewicz M, Eisenacher M, Tautges S, Canbay AE, Meyer HE, Weber F, Baba HA, Sitek B, (2016) "Quantitative proteome analysis reveals the correlation between endocytosis-associated proteins and hepatocellular carcinoma dedifferentiation." <i>Biochim Biophys Acta</i> <b>1864</b>(11):1579–85; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27519163 27519163]; doi: [https://dx.doi.org/10.1016/j.bbapap.2016.08.005 10.1016/j.bbapap.2016.08.005]; GPMDB: [http://gpmdb.org/data/keyword/27519163 36]. | ||
#Rasmussen MH, Lyskjær I, Jersie-Christensen RR, Tarpgaard LS, Primdal-Bengtson B, Nielsen MM, Pedersen JS, Hansen TP, Hansen F, Olsen JV, Pfeiffer P, Ørntoft TF, Andersen CL, (2016) "miR-625-3p regulates oxaliplatin resistance by targeting MAP2K6-p38 signalling in human colorectal adenocarcinoma cells." <i>Nat Commun</i> <b>7</b>:12436; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27526785 27526785]; doi: [https://dx.doi.org/10.1038/ncomms12436 10.1038/ncomms12436]; GPMDB: [http://gpmdb.org/data/keyword/27526785 24]. | #Rasmussen MH, Lyskjær I, Jersie-Christensen RR, Tarpgaard LS, Primdal-Bengtson B, Nielsen MM, Pedersen JS, Hansen TP, Hansen F, Olsen JV, Pfeiffer P, Ørntoft TF, Andersen CL, (2016) "miR-625-3p regulates oxaliplatin resistance by targeting MAP2K6-p38 signalling in human colorectal adenocarcinoma cells." <i>Nat Commun</i> <b>7</b>:12436; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27526785 27526785]; doi: [https://dx.doi.org/10.1038/ncomms12436 10.1038/ncomms12436]; GPMDB: [http://gpmdb.org/data/keyword/27526785 24]. | ||
+ | #Chatterjee S, Stupp GS, Park SK, Ducom JC, Yates JR 3rd, Su AI, Wolan DW, (2016) "A comprehensive and scalable database search system for metaproteomics." <i>BMC Genomics</i> <b>17</b>(1):642; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27528457 27528457]; doi: [https://dx.doi.org/10.1186/s12864-016-2855-3 10.1186/s12864-016-2855-3]; GPMDB: [http://gpmdb.org/data/keyword/27528457 28]. | ||
#Liu L, Phua YW, Lee RS, Ma X, Jenkins Y, Novy K, Humphrey ES, Chan H, Shearer R, Ong PC, Dai W, Saunders DN, Lucet IS, Daly RJ, (2016) "Homo- and Heterotypic Association Regulates Signaling by the SgK269/PEAK1 and SgK223 Pseudokinases." <i>J Biol Chem</i> <b>291</b>(41):21571–21583; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27531744 27531744]; doi: [https://dx.doi.org/10.1074/jbc.M116.748897 10.1074/jbc.M116.748897]; GPMDB: [http://gpmdb.org/data/keyword/27531744 6]. | #Liu L, Phua YW, Lee RS, Ma X, Jenkins Y, Novy K, Humphrey ES, Chan H, Shearer R, Ong PC, Dai W, Saunders DN, Lucet IS, Daly RJ, (2016) "Homo- and Heterotypic Association Regulates Signaling by the SgK269/PEAK1 and SgK223 Pseudokinases." <i>J Biol Chem</i> <b>291</b>(41):21571–21583; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27531744 27531744]; doi: [https://dx.doi.org/10.1074/jbc.M116.748897 10.1074/jbc.M116.748897]; GPMDB: [http://gpmdb.org/data/keyword/27531744 6]. | ||
#Mattei B, Spinelli F, Pontiggia D, De Lorenzo G, (2016) "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana." <i>Front Plant Sci</i> <b>7</b>:1107; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27532006 27532006]; doi: [https://dx.doi.org/10.3389/fpls.2016.01107 10.3389/fpls.2016.01107]; GPMDB: [http://gpmdb.org/data/keyword/27532006 12]. | #Mattei B, Spinelli F, Pontiggia D, De Lorenzo G, (2016) "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana." <i>Front Plant Sci</i> <b>7</b>:1107; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27532006 27532006]; doi: [https://dx.doi.org/10.3389/fpls.2016.01107 10.3389/fpls.2016.01107]; GPMDB: [http://gpmdb.org/data/keyword/27532006 12]. | ||
Line 1,324: | Line 1,330: | ||
#Mauri M, Kirchner M, Aharoni R, Ciolli Mattioli C, van den Bruck D, Gutkovitch N, Modepalli V, Selbach M, Moran Y, Chekulaeva M, (2016) "Conservation of miRNA-mediated silencing mechanisms across 600 million years of animal evolution." <i>Nucleic Acids Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27604873 27604873]; doi: [https://dx.doi.org/10.1093/nar/gkw792 10.1093/nar/gkw792]; GPMDB: [http://gpmdb.org/data/keyword/27604873 35]. | #Mauri M, Kirchner M, Aharoni R, Ciolli Mattioli C, van den Bruck D, Gutkovitch N, Modepalli V, Selbach M, Moran Y, Chekulaeva M, (2016) "Conservation of miRNA-mediated silencing mechanisms across 600 million years of animal evolution." <i>Nucleic Acids Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27604873 27604873]; doi: [https://dx.doi.org/10.1093/nar/gkw792 10.1093/nar/gkw792]; GPMDB: [http://gpmdb.org/data/keyword/27604873 35]. | ||
#Lee J, McKinney KQ, Pavlopoulos AJ, Han MH, Kim SH, Kim HJ, Hwang S, (2016) "Exosomal proteome analysis of cerebrospinal fluid detects biosignatures of neuromyelitis optica and multiple sclerosis." <i>Clin Chim Acta</i> <b>462</b>:118–126; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27609124 27609124]; doi: [https://dx.doi.org/10.1016/j.cca.2016.09.001 10.1016/j.cca.2016.09.001]; GPMDB: [http://gpmdb.org/data/keyword/27609124 24]. | #Lee J, McKinney KQ, Pavlopoulos AJ, Han MH, Kim SH, Kim HJ, Hwang S, (2016) "Exosomal proteome analysis of cerebrospinal fluid detects biosignatures of neuromyelitis optica and multiple sclerosis." <i>Clin Chim Acta</i> <b>462</b>:118–126; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27609124 27609124]; doi: [https://dx.doi.org/10.1016/j.cca.2016.09.001 10.1016/j.cca.2016.09.001]; GPMDB: [http://gpmdb.org/data/keyword/27609124 24]. | ||
+ | #Mulvaney KM, Matson JP, Siesser PF, Tamir TY, Goldfarb D, Jacobs TM, Cloer EW, Harrison JS, Vaziri C, Cook JG, Major MB, (2016) "Identification and Characterization of MCM3 as a Kelch-like ECH-associated Protein 1 (KEAP1) Substrate." <i>J Biol Chem</i> <b>291</b>(45):23719–23733; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27621311 27621311]; doi: [https://dx.doi.org/10.1074/jbc.M116.729418 10.1074/jbc.M116.729418]; GPMDB: [http://gpmdb.org/data/keyword/27621311 22]. | ||
#Subramanian S, Souleimanov A, Smith DL, (2016) "Proteomic Studies on the Effects of Lipo-Chitooligosaccharide and Thuricin 17 under Unstressed and Salt Stressed Conditions in Arabidopsis thaliana." <i>Front Plant Sci</i> <b>7</b>:1314; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27625672 27625672]; doi: [https://dx.doi.org/10.3389/fpls.2016.01314 10.3389/fpls.2016.01314]; GPMDB: [http://gpmdb.org/data/keyword/27625672 36]. | #Subramanian S, Souleimanov A, Smith DL, (2016) "Proteomic Studies on the Effects of Lipo-Chitooligosaccharide and Thuricin 17 under Unstressed and Salt Stressed Conditions in Arabidopsis thaliana." <i>Front Plant Sci</i> <b>7</b>:1314; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27625672 27625672]; doi: [https://dx.doi.org/10.3389/fpls.2016.01314 10.3389/fpls.2016.01314]; GPMDB: [http://gpmdb.org/data/keyword/27625672 36]. | ||
#Stroud DA, Surgenor EE, Formosa LE, Reljic B, Frazier AE, Dibley MG, Osellame LD, Stait T, Beilharz TH, Thorburn DR, Salim A, Ryan MT, (2016) "Accessory subunits are integral for assembly and function of human mitochondrial complex I." <i>Nature</i> <b>538</b>(7623):123–126; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27626371 27626371]; doi: [https://dx.doi.org/10.1038/nature19754 10.1038/nature19754]; GPMDB: [http://gpmdb.org/data/keyword/27626371 10]. | #Stroud DA, Surgenor EE, Formosa LE, Reljic B, Frazier AE, Dibley MG, Osellame LD, Stait T, Beilharz TH, Thorburn DR, Salim A, Ryan MT, (2016) "Accessory subunits are integral for assembly and function of human mitochondrial complex I." <i>Nature</i> <b>538</b>(7623):123–126; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27626371 27626371]; doi: [https://dx.doi.org/10.1038/nature19754 10.1038/nature19754]; GPMDB: [http://gpmdb.org/data/keyword/27626371 10]. | ||
Line 1,341: | Line 1,348: | ||
#Dörfel MJ, Fang H, Crain J, Klingener M, Weiser J, Lyon GJ, (2016) "Proteomic and genomic characterization of a yeast model for Ogden syndrome." <i>Yeast</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27668839 27668839]; doi: [https://dx.doi.org/10.1002/yea.3211 10.1002/yea.3211]; GPMDB: [http://gpmdb.org/data/keyword/27668839 1]. | #Dörfel MJ, Fang H, Crain J, Klingener M, Weiser J, Lyon GJ, (2016) "Proteomic and genomic characterization of a yeast model for Ogden syndrome." <i>Yeast</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27668839 27668839]; doi: [https://dx.doi.org/10.1002/yea.3211 10.1002/yea.3211]; GPMDB: [http://gpmdb.org/data/keyword/27668839 1]. | ||
#Lee A, Miller D, Henry R, Paruchuri VD, O'Meally RN, Boronina T, Cole RN, Zachara NE, (2016) "Combined Antibody/Lectin Enrichment Identifies Extensive Changes in the O-GlcNAc Sub-proteome upon Oxidative Stress." <i>J Proteome Res</i> <b>15</b>(12):4318–4336; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27669760 27669760]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00369 10.1021/acs.jproteome.6b00369]; GPMDB: [http://gpmdb.org/data/keyword/27669760 14]. | #Lee A, Miller D, Henry R, Paruchuri VD, O'Meally RN, Boronina T, Cole RN, Zachara NE, (2016) "Combined Antibody/Lectin Enrichment Identifies Extensive Changes in the O-GlcNAc Sub-proteome upon Oxidative Stress." <i>J Proteome Res</i> <b>15</b>(12):4318–4336; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27669760 27669760]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00369 10.1021/acs.jproteome.6b00369]; GPMDB: [http://gpmdb.org/data/keyword/27669760 14]. | ||
+ | #Smirnov A, Förstner KU, Holmqvist E, Otto A, Günster R, Becher D, Reinhardt R, Vogel J, (2016) "Grad-seq guides the discovery of ProQ as a major small RNA-binding protein." <i>Proc Natl Acad Sci U S A</i> <b>113</b>(41):11591–11596; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27671629 27671629]; doi: [https://dx.doi.org/10.1073/pnas.1609981113 10.1073/pnas.1609981113]; GPMDB: [http://gpmdb.org/data/keyword/27671629 200]. | ||
#Lyon SM, Mayampurath A, Rogers MR, Wolfgeher DJ, Fisher SM, Volchenboum SL, He TC, Reid RR, (2016) "A method for whole protein isolation from human cranial bone." <i>Anal Biochem</i> <b>515</b>:33–39; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27677936 27677936]; doi: [https://dx.doi.org/10.1016/j.ab.2016.09.021 10.1016/j.ab.2016.09.021]; GPMDB: [http://gpmdb.org/data/keyword/27677936 10]. | #Lyon SM, Mayampurath A, Rogers MR, Wolfgeher DJ, Fisher SM, Volchenboum SL, He TC, Reid RR, (2016) "A method for whole protein isolation from human cranial bone." <i>Anal Biochem</i> <b>515</b>:33–39; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27677936 27677936]; doi: [https://dx.doi.org/10.1016/j.ab.2016.09.021 10.1016/j.ab.2016.09.021]; GPMDB: [http://gpmdb.org/data/keyword/27677936 10]. | ||
#Larkin SE, Johnston HE, Jackson TR, Jamieson DG, Roumeliotis TI, Mockridge CI, Michael A, Manousopoulou A, Papachristou EK, Brown MD, Clarke NW, Pandha H, Aukim-Hastie CL, Cragg MS, Garbis SD, Townsend PA, (2016) "Detection of candidate biomarkers of prostate cancer progression in serum: a depletion-free 3D LC/MS quantitative proteomics pilot study." <i>Br J Cancer</i> <b>115</b>(9):1078–1086; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27685442 27685442]; doi: [https://dx.doi.org/10.1038/bjc.2016.291 10.1038/bjc.2016.291]; GPMDB: [http://gpmdb.org/data/keyword/27685442 8]. | #Larkin SE, Johnston HE, Jackson TR, Jamieson DG, Roumeliotis TI, Mockridge CI, Michael A, Manousopoulou A, Papachristou EK, Brown MD, Clarke NW, Pandha H, Aukim-Hastie CL, Cragg MS, Garbis SD, Townsend PA, (2016) "Detection of candidate biomarkers of prostate cancer progression in serum: a depletion-free 3D LC/MS quantitative proteomics pilot study." <i>Br J Cancer</i> <b>115</b>(9):1078–1086; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27685442 27685442]; doi: [https://dx.doi.org/10.1038/bjc.2016.291 10.1038/bjc.2016.291]; GPMDB: [http://gpmdb.org/data/keyword/27685442 8]. | ||
#Martello R, Leutert M, Jungmichel S, Bilan V, Larsen SC, Young C, Hottiger MO, Nielsen ML, (2016) "Proteome-wide identification of the endogenous ADP-ribosylome of mammalian cells and tissue." <i>Nat Commun</i> <b>7</b>:12917; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27686526 27686526]; doi: [https://dx.doi.org/10.1038/ncomms12917 10.1038/ncomms12917]; GPMDB: [http://gpmdb.org/data/keyword/27686526 15]. | #Martello R, Leutert M, Jungmichel S, Bilan V, Larsen SC, Young C, Hottiger MO, Nielsen ML, (2016) "Proteome-wide identification of the endogenous ADP-ribosylome of mammalian cells and tissue." <i>Nat Commun</i> <b>7</b>:12917; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27686526 27686526]; doi: [https://dx.doi.org/10.1038/ncomms12917 10.1038/ncomms12917]; GPMDB: [http://gpmdb.org/data/keyword/27686526 15]. | ||
+ | #Mathieu AA, Ohl-Séguy E, Dubois ML, Jean D, Jones C, Boudreau F, Boisvert FM, (2016) "Subcellular proteomics analysis of different stages of colorectal cancer cell lines." <i>Proteomics</i> <b>16</b>(23):3009–3018; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27689624 27689624]; doi: [https://dx.doi.org/10.1002/pmic.201600314 10.1002/pmic.201600314]; GPMDB: [http://gpmdb.org/data/keyword/27689624 52]. | ||
#Greenwood EJ, Matheson NJ, Wals K, van den Boomen DJ, Antrobus R, Williamson JC, Lehner PJ, (2016) "Temporal proteomic analysis of HIV infection reveals remodelling of the host phosphoproteome by lentiviral Vif variants." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27690223 27690223]; doi: [https://dx.doi.org/10.7554/eLife.18296 10.7554/eLife.18296]; GPMDB: [http://gpmdb.org/data/keyword/27690223 10]. | #Greenwood EJ, Matheson NJ, Wals K, van den Boomen DJ, Antrobus R, Williamson JC, Lehner PJ, (2016) "Temporal proteomic analysis of HIV infection reveals remodelling of the host phosphoproteome by lentiviral Vif variants." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27690223 27690223]; doi: [https://dx.doi.org/10.7554/eLife.18296 10.7554/eLife.18296]; GPMDB: [http://gpmdb.org/data/keyword/27690223 10]. | ||
#Gautier V, Cayrol C, Farache D, Roga S, Monsarrat B, Burlet-Schiltz O, Gonzalez de Peredo A, Girard JP, (2016) "Extracellular IL-33 cytokine, but not endogenous nuclear IL-33, regulates protein expression in endothelial cells." <i>Sci Rep</i> <b>6</b>:34255; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27694941 27694941]; doi: [https://dx.doi.org/10.1038/srep34255 10.1038/srep34255]; GPMDB: [http://gpmdb.org/data/keyword/27694941 252]. | #Gautier V, Cayrol C, Farache D, Roga S, Monsarrat B, Burlet-Schiltz O, Gonzalez de Peredo A, Girard JP, (2016) "Extracellular IL-33 cytokine, but not endogenous nuclear IL-33, regulates protein expression in endothelial cells." <i>Sci Rep</i> <b>6</b>:34255; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27694941 27694941]; doi: [https://dx.doi.org/10.1038/srep34255 10.1038/srep34255]; GPMDB: [http://gpmdb.org/data/keyword/27694941 252]. | ||
Line 1,367: | Line 1,376: | ||
#Assoni A, Coatti G, Valadares MC, Beccari M, Gomes J, Pelatti M, Mitne-Neto M, Carvalho VM, Zatz M, (2016) "Different Donors Mesenchymal Stromal Cells Secretomes Reveal Heterogeneous Profile of Relevance for Therapeutic Use." <i>Stem Cells Dev</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27762666 27762666]; doi: [https://dx.doi.org/10.1089/scd.2016.0218 10.1089/scd.2016.0218]; GPMDB: [http://gpmdb.org/data/keyword/27762666 48]. | #Assoni A, Coatti G, Valadares MC, Beccari M, Gomes J, Pelatti M, Mitne-Neto M, Carvalho VM, Zatz M, (2016) "Different Donors Mesenchymal Stromal Cells Secretomes Reveal Heterogeneous Profile of Relevance for Therapeutic Use." <i>Stem Cells Dev</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27762666 27762666]; doi: [https://dx.doi.org/10.1089/scd.2016.0218 10.1089/scd.2016.0218]; GPMDB: [http://gpmdb.org/data/keyword/27762666 48]. | ||
#Schanzenbächer CT, Sambandan S, Langer JD, Schuman EM, (2016) "Nascent Proteome Remodeling following Homeostatic Scaling at Hippocampal Synapses." <i>Neuron</i> <b>92</b>(2):358–371; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27764671 27764671]; doi: [https://dx.doi.org/10.1016/j.neuron.2016.09.058 10.1016/j.neuron.2016.09.058]; GPMDB: [http://gpmdb.org/data/keyword/27764671 80]. | #Schanzenbächer CT, Sambandan S, Langer JD, Schuman EM, (2016) "Nascent Proteome Remodeling following Homeostatic Scaling at Hippocampal Synapses." <i>Neuron</i> <b>92</b>(2):358–371; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27764671 27764671]; doi: [https://dx.doi.org/10.1016/j.neuron.2016.09.058 10.1016/j.neuron.2016.09.058]; GPMDB: [http://gpmdb.org/data/keyword/27764671 80]. | ||
+ | #Yu P, Hahne H, Wilhelm M, Kuster B, (2017) "Ethylene glycol improves electrospray ionization efficiency in bottom-up proteomics." <i>Anal Bioanal Chem</i> <b>409</b>(4):1049–1057; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27766361 27766361]; doi: [https://dx.doi.org/10.1007/s00216-016-0023-x 10.1007/s00216-016-0023-x]; GPMDB: [http://gpmdb.org/data/keyword/27766361 147]. | ||
+ | #Isogai T, van der Kammen R, Bleijerveld OB, Goerdayal SS, Argenzio E, Altelaar AF, Innocenti M, (2016) "Quantitative Proteomics Illuminates a Functional Interaction between mDia2 and the Proteasome." <i>J Proteome Res</i> <b>15</b>(12):4624–4637; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27769112 27769112]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00718 10.1021/acs.jproteome.6b00718]; GPMDB: [http://gpmdb.org/data/keyword/27769112 44]. | ||
#Peng J, Cao J, Ng FM, Hill J, (2016) "Pseudomonas aeruginosa develops Ciprofloxacin resistance from low to high level with distinctive proteome changes." <i>J Proteomics</i> <b>152</b>:75–87; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27771372 27771372]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.10.005 10.1016/j.jprot.2016.10.005]; GPMDB: [http://gpmdb.org/data/keyword/27771372 25]. | #Peng J, Cao J, Ng FM, Hill J, (2016) "Pseudomonas aeruginosa develops Ciprofloxacin resistance from low to high level with distinctive proteome changes." <i>J Proteomics</i> <b>152</b>:75–87; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27771372 27771372]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.10.005 10.1016/j.jprot.2016.10.005]; GPMDB: [http://gpmdb.org/data/keyword/27771372 25]. | ||
#Rafiee MR, Girardot C, Sigismondo G, Krijgsveld J, (2016) "Expanding the Circuitry of Pluripotency by Selective Isolation of Chromatin-Associated Proteins." <i>Mol Cell</i> <b>64</b>(3):624–635; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27773674 27773674]; doi: [https://dx.doi.org/10.1016/j.molcel.2016.09.019 10.1016/j.molcel.2016.09.019]; GPMDB: [http://gpmdb.org/data/keyword/27773674 13]. | #Rafiee MR, Girardot C, Sigismondo G, Krijgsveld J, (2016) "Expanding the Circuitry of Pluripotency by Selective Isolation of Chromatin-Associated Proteins." <i>Mol Cell</i> <b>64</b>(3):624–635; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27773674 27773674]; doi: [https://dx.doi.org/10.1016/j.molcel.2016.09.019 10.1016/j.molcel.2016.09.019]; GPMDB: [http://gpmdb.org/data/keyword/27773674 13]. | ||
Line 1,409: | Line 1,420: | ||
#Sheppard C, Blombach F, Belsom A, Schulz S, Daviter T, Smollett K, Mahieu E, Erdmann S, Tinnefeld P, Garrett R, Grohmann D, Rappsilber J, Werner F, (2016) "Repression of RNA polymerase by the archaeo-viral regulator ORF145/RIP." <i>Nat Commun</i> <b>7</b>:13595; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27882920 27882920]; doi: [https://dx.doi.org/10.1038/ncomms13595 10.1038/ncomms13595]; GPMDB: [http://gpmdb.org/data/keyword/27882920 9]. | #Sheppard C, Blombach F, Belsom A, Schulz S, Daviter T, Smollett K, Mahieu E, Erdmann S, Tinnefeld P, Garrett R, Grohmann D, Rappsilber J, Werner F, (2016) "Repression of RNA polymerase by the archaeo-viral regulator ORF145/RIP." <i>Nat Commun</i> <b>7</b>:13595; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27882920 27882920]; doi: [https://dx.doi.org/10.1038/ncomms13595 10.1038/ncomms13595]; GPMDB: [http://gpmdb.org/data/keyword/27882920 9]. | ||
#Hurwitz SN, Rider MA, Bundy JL, Liu X, Singh RK, Meckes DG Jr, (2016) "Proteomic profiling of NCI-60 extracellular vesicles uncovers common protein cargo and cancer type-specific biomarkers." <i>Oncotarget</i> <b>7</b>(52):86999–87015; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27894104 27894104]; doi: [https://dx.doi.org/10.18632/oncotarget.13569 10.18632/oncotarget.13569]; GPMDB: [http://gpmdb.org/data/keyword/27894104 898]. | #Hurwitz SN, Rider MA, Bundy JL, Liu X, Singh RK, Meckes DG Jr, (2016) "Proteomic profiling of NCI-60 extracellular vesicles uncovers common protein cargo and cancer type-specific biomarkers." <i>Oncotarget</i> <b>7</b>(52):86999–87015; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27894104 27894104]; doi: [https://dx.doi.org/10.18632/oncotarget.13569 10.18632/oncotarget.13569]; GPMDB: [http://gpmdb.org/data/keyword/27894104 898]. | ||
+ | #Gonneaud A, Jones C, Turgeon N, Lévesque D, Asselin C, Boudreau F, Boisvert FM, (2016) "A SILAC-Based Method for Quantitative Proteomic Analysis of Intestinal Organoids." <i>Sci Rep</i> <b>6</b>:38195; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27901089 27901089]; doi: [https://dx.doi.org/10.1038/srep38195 10.1038/srep38195]; GPMDB: [http://gpmdb.org/data/keyword/27901089 38]. | ||
#Sundberg M, Strage EM, Bergquist J, Holst BS, Ramström M, (2016) "Quantitative and Selective Analysis of Feline Growth Related Proteins Using Parallel Reaction Monitoring High Resolution Mass Spectrometry." <i>PLoS One</i> <b>11</b>(12):e0167138; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27907059 27907059]; doi: [https://dx.doi.org/10.1371/journal.pone.0167138 10.1371/journal.pone.0167138]; GPMDB: [http://gpmdb.org/data/keyword/27907059 3]. | #Sundberg M, Strage EM, Bergquist J, Holst BS, Ramström M, (2016) "Quantitative and Selective Analysis of Feline Growth Related Proteins Using Parallel Reaction Monitoring High Resolution Mass Spectrometry." <i>PLoS One</i> <b>11</b>(12):e0167138; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27907059 27907059]; doi: [https://dx.doi.org/10.1371/journal.pone.0167138 10.1371/journal.pone.0167138]; GPMDB: [http://gpmdb.org/data/keyword/27907059 3]. | ||
#Tatham MH, Cole C, Scullion P, Wilkie R, Westwood NJ, Stark LA, Hay RT, (2016) "A proteomic approach to analyse the aspirin-mediated lysine acetylome." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27913581 27913581]; doi: [https://dx.doi.org/10.1074/mcp.O116.065219 10.1074/mcp.O116.065219]; GPMDB: [http://gpmdb.org/data/keyword/27913581 40]. | #Tatham MH, Cole C, Scullion P, Wilkie R, Westwood NJ, Stark LA, Hay RT, (2016) "A proteomic approach to analyse the aspirin-mediated lysine acetylome." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27913581 27913581]; doi: [https://dx.doi.org/10.1074/mcp.O116.065219 10.1074/mcp.O116.065219]; GPMDB: [http://gpmdb.org/data/keyword/27913581 40]. | ||
Line 1,443: | Line 1,455: | ||
#Emmott E, Sorgeloos F, Caddy SL, Vashist S, Sosnovtsev S, Lloyd R, Heesom K, Locker N, Goodfellow I, (2017) "Norovirus-mediated modification of the translational landscape via virus and host-induced cleavage of translation initiation factors." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28087593 28087593]; doi: [https://dx.doi.org/10.1074/mcp.M116.062448 10.1074/mcp.M116.062448]; GPMDB: [http://gpmdb.org/data/keyword/28087593 3]. | #Emmott E, Sorgeloos F, Caddy SL, Vashist S, Sosnovtsev S, Lloyd R, Heesom K, Locker N, Goodfellow I, (2017) "Norovirus-mediated modification of the translational landscape via virus and host-induced cleavage of translation initiation factors." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28087593 28087593]; doi: [https://dx.doi.org/10.1074/mcp.M116.062448 10.1074/mcp.M116.062448]; GPMDB: [http://gpmdb.org/data/keyword/28087593 3]. | ||
#Niklasson M, Maddalo G, Sramkova Z, Mutlu E, Wee S, Sekyrova P, Schmidt L, Fritz N, Dehnisch I, Kyriatzis G, Krafcikova M, Carson BB, Feenstra J, Marinescu VD, Segerman A, Haraldsson M, Gustavsson AL, Hammarström LG, Jenmalm-Jensen A, Uhrbom L, Altelaar AF, Linnarsson S, Uhlén P, Trantirek L, Vincent CT, Nelander S, Enger PØ, Andäng M, (2017) "Membrane-depolarizing channel blockers induce selective glioma cell death by impairing nutrient transport and unfolded protein/amino acid responses." <i>Cancer Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28087597 28087597]; doi: [https://dx.doi.org/10.1158/0008-5472.CAN-16-2274 10.1158/0008-5472.CAN-16-2274]; GPMDB: [http://gpmdb.org/data/keyword/28087597 6]. | #Niklasson M, Maddalo G, Sramkova Z, Mutlu E, Wee S, Sekyrova P, Schmidt L, Fritz N, Dehnisch I, Kyriatzis G, Krafcikova M, Carson BB, Feenstra J, Marinescu VD, Segerman A, Haraldsson M, Gustavsson AL, Hammarström LG, Jenmalm-Jensen A, Uhrbom L, Altelaar AF, Linnarsson S, Uhlén P, Trantirek L, Vincent CT, Nelander S, Enger PØ, Andäng M, (2017) "Membrane-depolarizing channel blockers induce selective glioma cell death by impairing nutrient transport and unfolded protein/amino acid responses." <i>Cancer Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28087597 28087597]; doi: [https://dx.doi.org/10.1158/0008-5472.CAN-16-2274 10.1158/0008-5472.CAN-16-2274]; GPMDB: [http://gpmdb.org/data/keyword/28087597 6]. | ||
+ | #Gao Y, Chen Y, Zhan S, Zhang W, Xiong F, Ge W, (2017) "Comprehensive proteome analysis of lysosomes reveals the diverse function of macrophages in immune responses." <i>Oncotarget</i> <b>8</b>(5):7420–7440; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28088779 28088779]; doi: [https://dx.doi.org/10.18632/oncotarget.14558 10.18632/oncotarget.14558]; GPMDB: [http://gpmdb.org/data/keyword/28088779 2]. | ||
#Riesner K, Shi Y, Jacobi A, Kraeter M, Kalupa M, McGearey A, Mertlitz S, Cordes S, Schrezenmeier JF, Mengwasser J, Westphal S, Perez-Hernandez D, Schmitt C, Dittmar G, Guck J, Penack O, (2017) "Initiation of acute graft-versus-host disease by angiogenesis." <i>Blood</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28096092 28096092]; doi: [https://dx.doi.org/10.1182/blood-2016-08-736314 10.1182/blood-2016-08-736314]; GPMDB: [http://gpmdb.org/data/keyword/28096092 1]. | #Riesner K, Shi Y, Jacobi A, Kraeter M, Kalupa M, McGearey A, Mertlitz S, Cordes S, Schrezenmeier JF, Mengwasser J, Westphal S, Perez-Hernandez D, Schmitt C, Dittmar G, Guck J, Penack O, (2017) "Initiation of acute graft-versus-host disease by angiogenesis." <i>Blood</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28096092 28096092]; doi: [https://dx.doi.org/10.1182/blood-2016-08-736314 10.1182/blood-2016-08-736314]; GPMDB: [http://gpmdb.org/data/keyword/28096092 1]. | ||
#Princz LN, Wild P, Bittmann J, Aguado FJ, Blanco MG, Matos J, Pfander B, (2017) "Dbf4-dependent kinase and the Rtt107 scaffold promote Mus81-Mms4 resolvase activation during mitosis." <i>EMBO J</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28096179 28096179]; doi: [https://dx.doi.org/10.15252/embj.201694831 10.15252/embj.201694831]; GPMDB: [http://gpmdb.org/data/keyword/28096179 130]. | #Princz LN, Wild P, Bittmann J, Aguado FJ, Blanco MG, Matos J, Pfander B, (2017) "Dbf4-dependent kinase and the Rtt107 scaffold promote Mus81-Mms4 resolvase activation during mitosis." <i>EMBO J</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28096179 28096179]; doi: [https://dx.doi.org/10.15252/embj.201694831 10.15252/embj.201694831]; GPMDB: [http://gpmdb.org/data/keyword/28096179 130]. | ||
Line 1,455: | Line 1,468: | ||
#Godfrey M, Touati SA, Kataria M, Jones A, Snijders AP, Uhlmann F, (2017) "PP2A<sup>Cdc55</sup> Phosphatase Imposes Ordered Cell-Cycle Phosphorylation by Opposing Threonine Phosphorylation." <i>Mol Cell</i> <b>65</b>(3):393–402.e3; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28132839 28132839]; doi: [https://dx.doi.org/10.1016/j.molcel.2016.12.018 10.1016/j.molcel.2016.12.018]; GPMDB: [http://gpmdb.org/data/keyword/28132839 120]. | #Godfrey M, Touati SA, Kataria M, Jones A, Snijders AP, Uhlmann F, (2017) "PP2A<sup>Cdc55</sup> Phosphatase Imposes Ordered Cell-Cycle Phosphorylation by Opposing Threonine Phosphorylation." <i>Mol Cell</i> <b>65</b>(3):393–402.e3; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28132839 28132839]; doi: [https://dx.doi.org/10.1016/j.molcel.2016.12.018 10.1016/j.molcel.2016.12.018]; GPMDB: [http://gpmdb.org/data/keyword/28132839 120]. | ||
#Zolg DP, Wilhelm M, Schnatbaum K, Zerweck J, Knaute T, Delanghe B, Bailey DJ, Gessulat S, Ehrlich HC, Weininger M, Yu P, Schlegl J, Kramer K, Schmidt T, Kusebauch U, Deutsch EW, Aebersold R, Moritz RL, Wenschuh H, Moehring T, Aiche S, Huhmer A, Reimer U, Kuster B, (2017) "Building ProteomeTools based on a complete synthetic human proteome." <i>Nat Methods</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28135259 28135259]; doi: [https://dx.doi.org/10.1038/nmeth.4153 10.1038/nmeth.4153]; GPMDB: [http://gpmdb.org/data/keyword/28135259 1095]. | #Zolg DP, Wilhelm M, Schnatbaum K, Zerweck J, Knaute T, Delanghe B, Bailey DJ, Gessulat S, Ehrlich HC, Weininger M, Yu P, Schlegl J, Kramer K, Schmidt T, Kusebauch U, Deutsch EW, Aebersold R, Moritz RL, Wenschuh H, Moehring T, Aiche S, Huhmer A, Reimer U, Kuster B, (2017) "Building ProteomeTools based on a complete synthetic human proteome." <i>Nat Methods</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28135259 28135259]; doi: [https://dx.doi.org/10.1038/nmeth.4153 10.1038/nmeth.4153]; GPMDB: [http://gpmdb.org/data/keyword/28135259 1095]. | ||
+ | #Abe Y, Nagano M, Tada A, Adachi J, Tomonaga T, (2017) "Deep Phosphotyrosine Proteomics by Optimization of Phosphotyrosine Enrichment and MS/MS Parameters." <i>J Proteome Res</i> <b>16</b>(2):1077–1086; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28152594 28152594]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00576 10.1021/acs.jproteome.6b00576]; GPMDB: [http://gpmdb.org/data/keyword/28152594 41]. | ||
#Jung SY, Choi JM, Rousseaux MW, Malovannaya A, Kim JJ, Kutzera J, Wang Y, Huang Y, Zhu W, Maity S, Zoghbi HY, Qin J, (2017) "An anatomically resolved mouse brain proteome reveals Parkinson disease-relevant pathways." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28153913 28153913]; doi: [https://dx.doi.org/10.1074/mcp.M116.061440 10.1074/mcp.M116.061440]; GPMDB: [http://gpmdb.org/data/keyword/28153913 610]. | #Jung SY, Choi JM, Rousseaux MW, Malovannaya A, Kim JJ, Kutzera J, Wang Y, Huang Y, Zhu W, Maity S, Zoghbi HY, Qin J, (2017) "An anatomically resolved mouse brain proteome reveals Parkinson disease-relevant pathways." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28153913 28153913]; doi: [https://dx.doi.org/10.1074/mcp.M116.061440 10.1074/mcp.M116.061440]; GPMDB: [http://gpmdb.org/data/keyword/28153913 610]. | ||
#Diering GH, Nirujogi RS, Roth RH, Worley PF, Pandey A, Huganir RL, (2017) "Homer1a drives homeostatic scaling-down of excitatory synapses during sleep." <i>Science</i> <b>355</b>(6324):511–515; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28154077 28154077]; doi: [https://dx.doi.org/10.1126/science.aai8355 10.1126/science.aai8355]; GPMDB: [http://gpmdb.org/data/keyword/28154077 25]. | #Diering GH, Nirujogi RS, Roth RH, Worley PF, Pandey A, Huganir RL, (2017) "Homer1a drives homeostatic scaling-down of excitatory synapses during sleep." <i>Science</i> <b>355</b>(6324):511–515; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28154077 28154077]; doi: [https://dx.doi.org/10.1126/science.aai8355 10.1126/science.aai8355]; GPMDB: [http://gpmdb.org/data/keyword/28154077 25]. | ||
Line 1,501: | Line 1,515: | ||
#Bundy JL, Vied C, Nowakowski RS, (2017) "Sex differences in the molecular signature of the developing mouse hippocampus." <i>BMC Genomics</i> <b>18</b>(1):237; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28302071 28302071]; doi: [https://dx.doi.org/10.1186/s12864-017-3608-7 10.1186/s12864-017-3608-7]; GPMDB: [http://gpmdb.org/data/keyword/28302071 51]. | #Bundy JL, Vied C, Nowakowski RS, (2017) "Sex differences in the molecular signature of the developing mouse hippocampus." <i>BMC Genomics</i> <b>18</b>(1):237; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28302071 28302071]; doi: [https://dx.doi.org/10.1186/s12864-017-3608-7 10.1186/s12864-017-3608-7]; GPMDB: [http://gpmdb.org/data/keyword/28302071 51]. | ||
#Winter M, Dokic I, Schlegel J, Warnken U, Debus J, Abdollahi A, Schnölzer M, (2017) "Deciphering the acute cellular phosphoproteome response to irradiation with X-rays, protons and carbon ions." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28302921 28302921]; doi: [https://dx.doi.org/10.1074/mcp.M116.066597 10.1074/mcp.M116.066597]; GPMDB: [http://gpmdb.org/data/keyword/28302921 269]. | #Winter M, Dokic I, Schlegel J, Warnken U, Debus J, Abdollahi A, Schnölzer M, (2017) "Deciphering the acute cellular phosphoproteome response to irradiation with X-rays, protons and carbon ions." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28302921 28302921]; doi: [https://dx.doi.org/10.1074/mcp.M116.066597 10.1074/mcp.M116.066597]; GPMDB: [http://gpmdb.org/data/keyword/28302921 269]. | ||
+ | #Langley SR, Willeit K, Didangelos A, Matic LP, Skroblin P, Barallobre-Barreiro J, Lengquist M, Rungger G, Kapustin A, Kedenko L, Molenaar C, Lu R, Barwari T, Suna G, Yin X, Iglseder B, Paulweber B, Willeit P, Shalhoub J, Pasterkamp G, Davies AH, Monaco C, Hedin U, Shanahan CM, Willeit J, Kiechl S, Mayr M, (2017) "Extracellular matrix proteomics identifies molecular signature of symptomatic carotid plaques." <i>J Clin Invest</i> <b>127</b>(4):1546–1560; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28319050 28319050]; doi: [https://dx.doi.org/10.1172/JCI86924 10.1172/JCI86924]; GPMDB: [http://gpmdb.org/data/keyword/28319050 936]. | ||
#Kliza K, Taumer C, Pinzuti I, Franz-Wachtel M, Kunzelmann S, Stieglitz B, Macek B, Husnjak K, (2017) "Internally tagged ubiquitin: a tool to identify linear polyubiquitin-modified proteins by mass spectrometry." <i>Nat Methods</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28319114 28319114]; doi: [https://dx.doi.org/10.1038/nmeth.4228 10.1038/nmeth.4228]; GPMDB: [http://gpmdb.org/data/keyword/28319114 32]. | #Kliza K, Taumer C, Pinzuti I, Franz-Wachtel M, Kunzelmann S, Stieglitz B, Macek B, Husnjak K, (2017) "Internally tagged ubiquitin: a tool to identify linear polyubiquitin-modified proteins by mass spectrometry." <i>Nat Methods</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28319114 28319114]; doi: [https://dx.doi.org/10.1038/nmeth.4228 10.1038/nmeth.4228]; GPMDB: [http://gpmdb.org/data/keyword/28319114 32]. | ||
+ | #Khodadoust MS, Olsson N, Wagar LE, Haabeth OA, Chen B, Swaminathan K, Rawson K, Liu CL, Steiner D, Lund P, Rao S, Zhang L, Marceau C, Stehr H, Newman AM, Czerwinski DK, Carlton VE, Moorhead M, Faham M, Kohrt HE, Carette J, Green MR, Davis MM, Levy R, Elias JE, Alizadeh AA, (2017) "Antigen presentation profiling reveals recognition of lymphoma immunoglobulin neoantigens." <i>Nature</i> <b>543</b>(7647):723–727; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28329770 28329770]; doi: [https://dx.doi.org/10.1038/nature21433 10.1038/nature21433]; GPMDB: [http://gpmdb.org/data/keyword/28329770 147]. | ||
+ | #Zhang X, Maity T, Kashyap MK, Bansal M, Venugopalan A, Singh S, Awasthi S, Marimuthu A, Jacob HK, Belkina N, Pitts S, Cultraro CM, Gao S, Kirkali F, Biswas R, Chaerkady R, Califano A, Pandey A, Guha U, (2017) "Quantitative tyrosine phosphoproteomics of EGFR tyrosine kinase inhibitor-treated lung adenocarcinoma cells reveals potential novel biomarkers of therapeutic response." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28331001 28331001]; doi: [https://dx.doi.org/10.1074/mcp.M117.067439 10.1074/mcp.M117.067439]; GPMDB: [http://gpmdb.org/data/keyword/28331001 41]. | ||
+ | #Nathan A, Reinhardt P, Kruspe D, Jörß T, Groth M, Nolte H, Habenicht A, Herrmann J, Holschbach V, Toth B, Krüger M, Wang ZQ, Platzer M, Englert C, (2017) "The Wilms tumor protein Wt1 contributes to female fertility by regulating oviductal proteostasis." <i>Hum Mol Genet</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28334862 28334862]; doi: [https://dx.doi.org/10.1093/hmg/ddx075 10.1093/hmg/ddx075]; GPMDB: [http://gpmdb.org/data/keyword/28334862 48]. | ||
#Tien JF, Mazloomian A, Cheng SG, Hughes CS, Chow CC, Canapi LT, Oloumi A, Trigo-Gonzalez G, Bashashati A, Xu J, Chang VC, Shah SP, Aparicio S, Morin GB, (2017) "CDK12 regulates alternative last exon mRNA splicing and promotes breast cancer cell invasion." <i>Nucleic Acids Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28334900 28334900]; doi: [https://dx.doi.org/10.1093/nar/gkx187 10.1093/nar/gkx187]; GPMDB: [http://gpmdb.org/data/keyword/28334900 11]. | #Tien JF, Mazloomian A, Cheng SG, Hughes CS, Chow CC, Canapi LT, Oloumi A, Trigo-Gonzalez G, Bashashati A, Xu J, Chang VC, Shah SP, Aparicio S, Morin GB, (2017) "CDK12 regulates alternative last exon mRNA splicing and promotes breast cancer cell invasion." <i>Nucleic Acids Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28334900 28334900]; doi: [https://dx.doi.org/10.1093/nar/gkx187 10.1093/nar/gkx187]; GPMDB: [http://gpmdb.org/data/keyword/28334900 11]. | ||
#O'Neill JR, Pak HS, Pairo-Castineira E, Save V, Paterson-Brown S, Nenutil R, Vojtěšek B, Overton I, Scherl A, Hupp TR, (2017) "Quantitative shotgun proteomics unveils candidate novel oesophageal adenocarcinoma-specific proteins." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28336725 28336725]; doi: [https://dx.doi.org/10.1074/mcp.M116.065078 10.1074/mcp.M116.065078]; GPMDB: [http://gpmdb.org/data/keyword/28336725 7]. | #O'Neill JR, Pak HS, Pairo-Castineira E, Save V, Paterson-Brown S, Nenutil R, Vojtěšek B, Overton I, Scherl A, Hupp TR, (2017) "Quantitative shotgun proteomics unveils candidate novel oesophageal adenocarcinoma-specific proteins." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28336725 28336725]; doi: [https://dx.doi.org/10.1074/mcp.M116.065078 10.1074/mcp.M116.065078]; GPMDB: [http://gpmdb.org/data/keyword/28336725 7]. | ||
- | #Francavilla C, Lupia M, Tsafou K, Villa A, Kowalczyk K, Rakownikow Jersie-Christensen R, Bertalot G, Confalonieri S, Brunak S, Jensen LJ, Cavallaro U, Olsen JV, (2017) "Phosphoproteomics of Primary Cells Reveals Druggable Kinase Signatures in Ovarian Cancer." <i>Cell Rep</i> <b>18</b>(13):3242–3256; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28355574 28355574]; doi: [https://dx.doi.org/10.1016/j.celrep.2017.03.015 10.1016/j.celrep.2017.03.015]; GPMDB: [http://gpmdb.org/data/keyword/28355574 | + | #Francavilla C, Lupia M, Tsafou K, Villa A, Kowalczyk K, Rakownikow Jersie-Christensen R, Bertalot G, Confalonieri S, Brunak S, Jensen LJ, Cavallaro U, Olsen JV, (2017) "Phosphoproteomics of Primary Cells Reveals Druggable Kinase Signatures in Ovarian Cancer." <i>Cell Rep</i> <b>18</b>(13):3242–3256; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28355574 28355574]; doi: [https://dx.doi.org/10.1016/j.celrep.2017.03.015 10.1016/j.celrep.2017.03.015]; GPMDB: [http://gpmdb.org/data/keyword/28355574 59]. |
+ | #Casanova R, Xia D, Rulle U, Nanni P, Grossmann J, Vrugt B, Wettstein R, Ballester R, Astolfo A, Weder W, Moch H, Stampanoni M, Beck AH, Soltermann A, (2017) "Morphoproteomic Characterization of Lung Squamous Cell Carcinoma Fragmentation, a Histological Marker of Increased Tumor Invasiveness." <i>Cancer Res</i> <b>77</b>(10):2585–2593; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28364001 28364001]; doi: [https://dx.doi.org/10.1158/0008-5472.CAN-16-2363 10.1158/0008-5472.CAN-16-2363]; GPMDB: [http://gpmdb.org/data/keyword/28364001 49]. | ||
+ | #Chatzinikolaou G, Apostolou Z, Aid-Pavlidis T, Ioannidou A, Karakasilioti I, Papadopoulos GL, Aivaliotis M, Tsekrekou M, Strouboulis J, Kosteas T, Garinis GA, (2017) "ERCC1-XPF cooperates with CTCF and cohesin to facilitate the developmental silencing of imprinted genes." <i>Nat Cell Biol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28368372 28368372]; doi: [https://dx.doi.org/10.1038/ncb3499 10.1038/ncb3499]; GPMDB: [http://gpmdb.org/data/keyword/28368372 146]. | ||
+ | #Schaible B, Rodriguez J, Garcia A, von Kriegsheim A, McClean S, Hickey C, Keogh CE, Brown E, Schaffer K, Broquet A, Taylor CT, (2017) "Hypoxia Reduces the Pathogenicity of Pseudomonas aeruginosa by Decreasing the Expression of Multiple Virulence Factors." <i>J Infect Dis</i> <b>215</b>(9):1459–1467; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28368464 28368464]; doi: [https://dx.doi.org/10.1093/infdis/jix139 10.1093/infdis/jix139]; GPMDB: [http://gpmdb.org/data/keyword/28368464 18]. | ||
+ | #Duguet F, Locard-Paulet M, Marcellin M, Chaoui K, Bernard I, Andreoletti O, Lesourne R, Burlet-Schiltz O, Gonzalez de Peredo A, Saoudi A, (2017) "Proteomic analysis of regulatory T cells reveals the importance of Themis1 in the control of their suppressive function." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28373295 28373295]; doi: [https://dx.doi.org/10.1074/mcp.M116.062745 10.1074/mcp.M116.062745]; GPMDB: [http://gpmdb.org/data/keyword/28373295 26]. | ||
+ | #Namuduri AV, Heras G, Mi J, Cacciani N, Hörnaeus K, Konzer A, Bergström Lind S, Larsson L, Gastaldello S, (2017) "A proteomic approach to identify alterations in the SUMO network during controlled mechanical ventilation in rat diaphragm muscle." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28373296 28373296]; doi: [https://dx.doi.org/10.1074/mcp.M116.066159 10.1074/mcp.M116.066159]; GPMDB: [http://gpmdb.org/data/keyword/28373296 80]. | ||
+ | #Anderson KA, Huynh FK, Fisher-Wellman K, Stuart JD, Peterson BS, Douros JD, Wagner GR, Thompson JW, Madsen AS, Green MF, Sivley RM, Ilkayeva OR, Stevens RD, Backos DS, Capra JA, Olsen CA, Campbell JE, Muoio DM, Grimsrud PA, Hirschey MD, (2017) "SIRT4 Is a Lysine Deacylase that Controls Leucine Metabolism and Insulin Secretion." <i>Cell Metab</i> <b>25</b>(4):838–855.e15; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28380376 28380376]; doi: [https://dx.doi.org/10.1016/j.cmet.2017.03.003 10.1016/j.cmet.2017.03.003]; GPMDB: [http://gpmdb.org/data/keyword/28380376 4]. | ||
+ | #Casas-Vila N, Bluhm A, Sayols S, Dinges N, Dejung M, Altenhein T, Kappei D, Altenhein B, Roignant JY, Butter F, (2017) "The developmental proteome of <i>Drosophila melanogaster</i>." <i>Genome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28381612 28381612]; doi: [https://dx.doi.org/10.1101/gr.213694.116 10.1101/gr.213694.116]; GPMDB: [http://gpmdb.org/data/keyword/28381612 124]. | ||
+ | #Chiang CK, Xu B, Mehta N, Mayne J, Sun WY, Cheng K, Ning Z, Dong J, Zou H, Cheng HM, Figeys D, (2017) "Phosphoproteome Profiling Reveals Circadian Clock Regulation of Posttranslational Modifications in the Murine Hippocampus." <i>Front Neurol</i> <b>8</b>:110; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28382018 28382018]; doi: [https://dx.doi.org/10.3389/fneur.2017.00110 10.3389/fneur.2017.00110]; GPMDB: [http://gpmdb.org/data/keyword/28382018 299]. | ||
+ | #Young C, Podtelejnikov AV, Nielsen ML, (2017) "Improved Reversed Phase Chromatography of Hydrophilic Peptides from Spatial and Temporal Changes in Column Temperature." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28387123 28387123]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b01055 10.1021/acs.jproteome.6b01055]; GPMDB: [http://gpmdb.org/data/keyword/28387123 12]. | ||
+ | #Beach RR, Ricci-Tam C, Brennan CM, Moomau CA, Hsu PH, Hua B, Silberman RE, Springer M, Amon A, (2017) "Aneuploidy Causes Non-genetic Individuality." <i>Cell</i> <b>169</b>(2):229–242.e21; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28388408 28388408]; doi: [https://dx.doi.org/10.1016/j.cell.2017.03.021 10.1016/j.cell.2017.03.021]; GPMDB: [http://gpmdb.org/data/keyword/28388408 3]. | ||
+ | #Worst TS, von Hardenberg J, Gross JC, Erben P, Schnoelzer M, Hausser I, Bugert P, Michel MS, Boutros M, (2017) "A database-augmented, exosome-based mass spectrometry approach exemplarily identifies circulating claudin 3 as biomarker in prostate cancer." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28396511 28396511]; doi: [https://dx.doi.org/10.1074/mcp.M117.068577 10.1074/mcp.M117.068577]; GPMDB: [http://gpmdb.org/data/keyword/28396511 17]. | ||
+ | #Mohr S, Doebele C, Comoglio F, Berg T, Beck J, Bohnenberger H, Alexe G, Corso J, Ströbel P, Wachter A, Beissbarth T, Schnütgen F, Cremer A, Haetscher N, Göllner S, Rouhi A, Palmqvist L, Rieger MA, Schroeder T, Bönig H, Müller-Tidow C, Kuchenbauer F, Schütz E, Green AR, Urlaub H, Stegmaier K, Humphries RK, Serve H, Oellerich T, (2017) "Hoxa9 and Meis1 Cooperatively Induce Addiction to Syk Signaling by Suppressing miR-146a in Acute Myeloid Leukemia." <i>Cancer Cell</i> <b>31</b>(4):549–562.e11; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28399410 28399410]; doi: [https://dx.doi.org/10.1016/j.ccell.2017.03.001 10.1016/j.ccell.2017.03.001]; GPMDB: [http://gpmdb.org/data/keyword/28399410 30]. | ||
+ | #Rinschen MM, Grahammer F, Hoppe AK, Kohli P, Hagmann H, Kretz O, Bertsch S, Höhne M, Göbel H, Bartram MP, Gandhirajan RK, Krüger M, Brinkkoetter PT, Huber TB, Kann M, Wickström SA, Benzing T, Schermer B, (2017) "YAP-mediated mechanotransduction determines the podocyte's response to damage." <i>Sci Signal</i> <b>10</b>(474):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28400537 28400537]; doi: [https://dx.doi.org/10.1126/scisignal.aaf8165 10.1126/scisignal.aaf8165]; GPMDB: [http://gpmdb.org/data/keyword/28400537 23]. | ||
+ | #Müller MM, Lehmann R, Klassert TE, Reifenstein S, Conrad T, Moore C, Kuhn A, Behnert A, Guthke R, Driesch D, Slevogt H, (2017) "Global analysis of glycoproteins identifies markers of endotoxin tolerant monocytes and GPR84 as a modulator of TNFα expression." <i>Sci Rep</i> <b>7</b>(1):838; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28404994 28404994]; doi: [https://dx.doi.org/10.1038/s41598-017-00828-y 10.1038/s41598-017-00828-y]; GPMDB: [http://gpmdb.org/data/keyword/28404994 138]. | ||
+ | #Wang M, Guo Y, Wang M, Zhou T, Xue Y, Du G, Wei X, Wang J, Qi L, Zhang H, Li L, Ye L, Guo X, Wu X, (2017) "The GDNF-responsive Phosphoprotein Landscape Identifies Raptor Phosphorylation Required for Spermatogonial Progenitor Cell Proliferation." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28408662 28408662]; doi: [https://dx.doi.org/10.1074/mcp.M116.065797 10.1074/mcp.M116.065797]; GPMDB: [http://gpmdb.org/data/keyword/28408662 21]. | ||
+ | #Shen X, Shen S, Li J, Hu Q, Nie L, Tu C, Wang X, Orsburn B, Wang J, Qu J, (2017) "An IonStar experimental strategy for MS1 ion current-based quantification using ultra-high-field Orbitrap: reproducible, in-depth and accurate protein measurement in larger cohorts." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28412812 28412812]; doi: [https://dx.doi.org/10.1021/acs.jproteome.7b00061 10.1021/acs.jproteome.7b00061]; GPMDB: [http://gpmdb.org/data/keyword/28412812 20]. | ||
+ | #Kathiriya JJ, Nakra N, Nixon J, Patel PS, Vaghasiya V, Alhassani A, Tian Z, Allen-Gipson D, Davé V, (2017) "Galectin-1 inhibition attenuates profibrotic signaling in hypoxia-induced pulmonary fibrosis." <i>Cell Death Discov</i> <b>3</b>:17010; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28417017 28417017]; doi: [https://dx.doi.org/10.1038/cddiscovery.2017.10 10.1038/cddiscovery.2017.10]; GPMDB: [http://gpmdb.org/data/keyword/28417017 3]. | ||
+ | #Perl K, Ushakov K, Pozniak Y, Yizhar-Barnea O, Bhonker Y, Shivatzki S, Geiger T, Avraham KB, Shamir R, (2017) "Reduced changes in protein compared to mRNA levels across non-proliferating tissues." <i>BMC Genomics</i> <b>18</b>(1):305; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28420336 28420336]; doi: [https://dx.doi.org/10.1186/s12864-017-3683-9 10.1186/s12864-017-3683-9]; GPMDB: [http://gpmdb.org/data/keyword/28420336 6]. | ||
+ | #Mendoza-Viveros L, Chiang CK, Ong JLK, Hegazi S, Cheng AH, Bouchard-Cannon P, Fana M, Lowden C, Zhang P, Bothorel B, Michniewicz MG, Magill ST, Holmes MM, Goodman RH, Simonneaux V, Figeys D, Cheng HM, (2017) "miR-132/212 Modulates Seasonal Adaptation and Dendritic Morphology of the Central Circadian Clock." <i>Cell Rep</i> <b>19</b>(3):505–520; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28423315 28423315]; doi: [https://dx.doi.org/10.1016/j.celrep.2017.03.057 10.1016/j.celrep.2017.03.057]; GPMDB: [http://gpmdb.org/data/keyword/28423315 128]. | ||
+ | #Treiber T, Treiber N, Plessmann U, Harlander S, Daiß JL, Eichner N, Lehmann G, Schall K, Urlaub H, Meister G, (2017) "A Compendium of RNA-Binding Proteins that Regulate MicroRNA Biogenesis." <i>Mol Cell</i> <b>66</b>(2):270–284.e13; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28431233 28431233]; doi: [https://dx.doi.org/10.1016/j.molcel.2017.03.014 10.1016/j.molcel.2017.03.014]; GPMDB: [http://gpmdb.org/data/keyword/28431233 3033]. | ||
+ | #Beyene GT, Kalayou S, Riaz T, Tonjum T, (2017) "Comparative proteomic analysis of Neisseria meningitidis wildtype and dprA null mutant strains links DNA processing to pilus biogenesis." <i>BMC Microbiol</i> <b>17</b>(1):96; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28431522 28431522]; doi: [https://dx.doi.org/10.1186/s12866-017-1004-8 10.1186/s12866-017-1004-8]; GPMDB: [http://gpmdb.org/data/keyword/28431522 108]. | ||
+ | #Xu B, Gao Y, Zhan S, Ge W, (2017) "Quantitative proteomic profiling for clarification of the crucial roles of lysosomes in microbial infections." <i>Mol Immunol</i> <b>87</b>:122–131; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28433889 28433889]; doi: [https://dx.doi.org/10.1016/j.molimm.2017.04.002 10.1016/j.molimm.2017.04.002]; GPMDB: [http://gpmdb.org/data/keyword/28433889 2]. | ||
+ | #Clulow JA, Storck EM, Lanyon-Hogg T, Kalesh KA, Jones LH, Tate EW, (2017) "Competition-based, quantitative chemical proteomics in breast cancer cells identifies new target profiles for sulforaphane." <i>Chem Commun (Camb)</i> <b>53</b>(37):5182–5185; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28439590 28439590]; doi: [https://dx.doi.org/10.1039/c6cc08797c 10.1039/c6cc08797c]; GPMDB: [http://gpmdb.org/data/keyword/28439590 32]. | ||
+ | #Arntzen MØ, Várnai A, Mackie RI, Eijsink VGH, Pope PB, (2017) "Outer membrane vesicles from Fibrobacter succinogenes S85 contain an array of carbohydrate-active enzymes with versatile polysaccharide-degrading capacity." <i>Environ Microbiol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28447389 28447389]; doi: [https://dx.doi.org/10.1111/1462-2920.13770 10.1111/1462-2920.13770]; GPMDB: [http://gpmdb.org/data/keyword/28447389 20]. | ||
+ | #Nguyen EV, Huhtinen K, Goo YA, Kaipio K, Andersson N, Rantanen V, Hynninen J, Lahesmaa R, Carpen O, Goodlett DR, (2017) "Hyper-phosphorylation of Sequestosome-1 distinguishes resistance to cisplatin in patient derived high grade serous ovarian cancer cells." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28455291 28455291]; doi: [https://dx.doi.org/10.1074/mcp.M116.058321 10.1074/mcp.M116.058321]; GPMDB: [http://gpmdb.org/data/keyword/28455291 60]. | ||
+ | #Aviner R, Hofmann S, Elman T, Shenoy A, Geiger T, Elkon R, Ehrlich M, Elroy-Stein O, (2017) "Proteomic analysis of polyribosomes identifies splicing factors as potential regulators of translation during mitosis." <i>Nucleic Acids Res</i> <b>45</b>(10):5945–5957; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28460002 28460002]; doi: [https://dx.doi.org/10.1093/nar/gkx326 10.1093/nar/gkx326]; GPMDB: [http://gpmdb.org/data/keyword/28460002 15]. | ||
+ | #Tran TT, Strozynski M, Thiede B, (2017) "Quantitative phosphoproteome analysis of cisplatin-induced apoptosis in Jurkat T cells." <i>Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28464451 28464451]; doi: [https://dx.doi.org/10.1002/pmic.201600470 10.1002/pmic.201600470]; GPMDB: [http://gpmdb.org/data/keyword/28464451 32]. | ||
+ | #Ooi JD, Petersen J, Tan YH, Huynh M, Willett ZJ, Ramarathinam SH, Eggenhuizen PJ, Loh KL, Watson KA, Gan PY, Alikhan MA, Dudek NL, Handel A, Hudson BG, Fugger L, Power DA, Holt SG, Coates PT, Gregersen JW, Purcell AW, Holdsworth SR, La Gruta NL, Reid HH, Rossjohn J, Kitching AR, (2017) "Dominant protection from HLA-linked autoimmunity by antigen-specific regulatory T cells." <i>Nature</i> <b>545</b>(7653):243–247; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28467828 28467828]; doi: [https://dx.doi.org/10.1038/nature22329 10.1038/nature22329]; GPMDB: [http://gpmdb.org/data/keyword/28467828 30]. | ||
+ | #van Aalderen MC, van den Biggelaar M, Remmerswaal EBM, van Alphen FPJ, Meijer AB, Ten Berge IJM, van Lier RAW, (2017) "Label-free Analysis of CD8<sup>+</sup> T Cell Subset Proteomes Supports a Progressive Differentiation Model of Human-Virus-Specific T Cells." <i>Cell Rep</i> <b>19</b>(5):1068–1079; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28467900 28467900]; doi: [https://dx.doi.org/10.1016/j.celrep.2017.04.014 10.1016/j.celrep.2017.04.014]; GPMDB: [http://gpmdb.org/data/keyword/28467900 84]. | ||
+ | #Tello-Lafoz M, Martínez-Martínez G, Rodríguez-Rodríguez C, Albar JP, Huse M, Gharbi S, Merida I, (2017) "SNX27 interactome in T lymphocytes identifies ZO-2 dynamic redistribution at the immune synapse." <i>Traffic</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28477369 28477369]; doi: [https://dx.doi.org/10.1111/tra.12492 10.1111/tra.12492]; GPMDB: [http://gpmdb.org/data/keyword/28477369 57]. | ||
+ | #Ozdian T, Holub D, Maceckova Z, Varanasi L, Rylova G, Rehulka J, Vaclavkova J, Slavik H, Moudry P, Znojek P, Stankova J, de Sanctis JB, Hajduch M, Dzubak P, (2017) "Proteomic profiling reveals DNA damage, nucleolar and ribosomal stress are the main responses to oxaliplatin treatment in cancer cells." <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28478306 28478306]; doi: [https://dx.doi.org/10.1016/j.jprot.2017.05.005 10.1016/j.jprot.2017.05.005]; GPMDB: [http://gpmdb.org/data/keyword/28478306 63]. | ||
+ | #Murr A, Pink C, Hammer E, Michalik S, Dhople VM, Holtfreter B, Völker U, Kocher T, Gesell Salazar M, (2017) "Cross-Sectional Association of Salivary Proteins with Age, Sex, Body Mass Index, Smoking, and Education." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28481548 28481548]; doi: [https://dx.doi.org/10.1021/acs.jproteome.7b00133 10.1021/acs.jproteome.7b00133]; GPMDB: [http://gpmdb.org/data/keyword/28481548 209]. | ||
+ | #Kilpinen H, Goncalves A, Leha A, Afzal V, Alasoo K, Ashford S, Bala S, Bensaddek D, Casale FP, Culley OJ, Danecek P, Faulconbridge A, Harrison PW, Kathuria A, McCarthy D, McCarthy SA, Meleckyte R, Memari Y, Moens N, Soares F, Mann A, Streeter I, Agu CA, Alderton A, Nelson R, Harper S, Patel M, White A, Patel SR, Clarke L, Halai R, Kirton CM, Kolb-Kokocinski A, Beales P, Birney E, Danovi D, Lamond AI, Ouwehand WH, Vallier L, Watt FM, Durbin R, Stegle O, Gaffney DJ, (2017) "Common genetic variation drives molecular heterogeneity in human iPSCs." <i>Nature</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28489815 28489815]; doi: [https://dx.doi.org/10.1038/nature22403 10.1038/nature22403]; GPMDB: [http://gpmdb.org/data/keyword/28489815 72]. | ||
+ | #Jahn A, Rane G, Paszkowski-Rogacz M, Sayols S, Bluhm A, Han CT, Draškovič I, Londoño-Vallejo JA, Kumar AP, Buchholz F, Butter F, Kappei D, (2017) "ZBTB48 is both a vertebrate telomere-binding protein and a transcriptional activator." <i>EMBO Rep</i> <b>18</b>(6):929–946; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28500257 28500257]; doi: [https://dx.doi.org/10.15252/embr.201744095 10.15252/embr.201744095]; GPMDB: [http://gpmdb.org/data/keyword/28500257 35]. | ||
+ | #Kramer DA, Eldeeb MA, Wuest M, Mercer J, Fahlman RP, (2017) "Proteomic characterization of EL4 lymphoma derived tumors upon chemotherapy treatment reveals potential roles for lysosomes and caspase-6 during tumor cell death in vivo." <i>Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28508578 28508578]; doi: [https://dx.doi.org/10.1002/pmic.201700060 10.1002/pmic.201700060]; GPMDB: [http://gpmdb.org/data/keyword/28508578 150]. | ||
+ | #Peng W, Zhang Y, Zhu R, Mechref Y, (2017) "Comparative Membrane Proteomics Analyses of Breast Cancer Cell Lines to Understand the Molecular Mechanism of Breast Cancer Brain Metastasis." <i>Electrophoresis</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28523741 28523741]; doi: [https://dx.doi.org/10.1002/elps.201700027 10.1002/elps.201700027]; GPMDB: [http://gpmdb.org/data/keyword/28523741 18]. | ||
+ | #Zai X, Yang Q, Liu K, Li R, Qian M, Zhao T, Li Y, Yin Y, Dong D, Fu L, Li S, Xu J, Chen W, (2017) "A comprehensive proteogenomic study of the human Brucella vaccine strain 104 M." <i>BMC Genomics</i> <b>18</b>(1):402; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28535754 28535754]; doi: [https://dx.doi.org/10.1186/s12864-017-3800-9 10.1186/s12864-017-3800-9]; GPMDB: [http://gpmdb.org/data/keyword/28535754 90]. | ||
+ | #Yimer SA, Birhanu AG, Kalayou S, Riaz T, Zegeye ED, Beyene GT, Holm-Hansen C, Norheim G, Abebe M, Aseffa A, Tønjum T, (2017) "Comparative Proteomic Analysis of <i>Mycobacterium tuberculosis</i> Lineage 7 and Lineage 4 Strains Reveals Differentially Abundant Proteins Linked to Slow Growth and Virulence." <i>Front Microbiol</i> <b>8</b>:795; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28536560 28536560]; doi: [https://dx.doi.org/10.3389/fmicb.2017.00795 10.3389/fmicb.2017.00795]; GPMDB: [http://gpmdb.org/data/keyword/28536560 158]. | ||
+ | #Smallwood HS, Duan S, Morfouace M, Rezinciuc S, Shulkin BL, Shelat A, Zink EE, Milasta S, Bajracharya R, Oluwaseum AJ, Roussel MF, Green DR, Pasa-Tolic L, Thomas PG, (2017) "Targeting Metabolic Reprogramming by Influenza Infection for Therapeutic Intervention." <i>Cell Rep</i> <b>19</b>(8):1640–1653; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28538182 28538182]; doi: [https://dx.doi.org/10.1016/j.celrep.2017.04.039 10.1016/j.celrep.2017.04.039]; GPMDB: [http://gpmdb.org/data/keyword/28538182 11]. | ||
+ | #Elmasri WA, Zhu R, Peng W, Al-Hariri M, Kobeissy F, Tran P, Hamood AN, Hegazy MF, Paré PW, Mechref Y, (2017) "Multitargeted Flavonoid Inhibition of the Pathogenic Bacterium Staphylococcus aureus: A Proteomic Characterization." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28541047 28541047]; doi: [https://dx.doi.org/10.1021/acs.jproteome.7b00137 10.1021/acs.jproteome.7b00137]; GPMDB: [http://gpmdb.org/data/keyword/28541047 12]. | ||
+ | #Fijalkowska D, Verbruggen S, Ndah E, Jonckheere V, Menschaert G, Van Damme P, (2017) "eIF1 modulates the recognition of suboptimal translation initiation sites and steers gene expression via uORFs." <i>Nucleic Acids Res</i> <b>45</b>(13):7997–8013; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28541577 28541577]; doi: [https://dx.doi.org/10.1093/nar/gkx469 10.1093/nar/gkx469]; GPMDB: [http://gpmdb.org/data/keyword/28541577 19]. | ||
+ | #Kume K, Cantwell H, Neumann FR, Jones AW, Snijders AP, Nurse P, (2017) "A systematic genomic screen implicates nucleocytoplasmic transport and membrane growth in nuclear size control." <i>PLoS Genet</i> <b>13</b>(5):e1006767; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28545058 28545058]; doi: [https://dx.doi.org/10.1371/journal.pgen.1006767 10.1371/journal.pgen.1006767]; GPMDB: [http://gpmdb.org/data/keyword/28545058 192]. | ||
+ | #Meier SM, Kreutz D, Winter L, Klose MHM, Cseh K, Weiss T, Bileck A, Alte B, Mader JC, Jana S, Chatterjee A, Bhattacharyya A, Hejl M, Jakupec MA, Heffeter P, Berger W, Hartinger CG, Keppler BK, Wiche G, Gerner C, (2017) "An Organoruthenium Anticancer Agent Shows Unexpected Target Selectivity For Plectin." <i>Angew Chem Int Ed Engl</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28547791 28547791]; doi: [https://dx.doi.org/10.1002/anie.201702242 10.1002/anie.201702242]; GPMDB: [http://gpmdb.org/data/keyword/28547791 4]. | ||
+ | #Hou J, Li Z, Zhong W, Hao Q, Lei L, Wang L, Zhao D, Xu P, Zhou Y, Wang Y, Xu T, (2017) "Temporal Transcriptomic and Proteomic Landscapes of Deteriorating Pancreatic Islets in Type 2 Diabetic Rats." <i>Diabetes</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28559245 28559245]; doi: [https://dx.doi.org/10.2337/db16-1305 10.2337/db16-1305]; GPMDB: [http://gpmdb.org/data/keyword/28559245 12]. | ||
+ | #Sanchez-Quiles V, Akimov V, Osinalde N, Francavilla C, Puglia M, Barrio-Hernandez I, Kratchmarova I, Olsen JV, Blagoev B, (2017) "CYLD deubiquitinase is necessary for proper ubiquitination and degradation of the epidermal growth factor receptor." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28572092 28572092]; doi: [https://dx.doi.org/10.1074/mcp.M116.066423 10.1074/mcp.M116.066423]; GPMDB: [http://gpmdb.org/data/keyword/28572092 108]. | ||
+ | #Obermann J, Priglinger CS, Merl-Pham J, Geerlof A, Priglinger S, Götz M, Hauck SM, (2017) "Proteome-wide identification of glycosylation-dependent interactors of Galectin-1 and Galectin-3 on mesenchymal retinal pigment epithelial cells." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28576849 28576849]; doi: [https://dx.doi.org/10.1074/mcp.M116.066381 10.1074/mcp.M116.066381]; GPMDB: [http://gpmdb.org/data/keyword/28576849 193]. | ||
+ | #Sun C, De Mello V, Mohamed A, Ortuste Quiroga HP, Garcia-Munoz A, Al Bloshi A, Tremblay AM, von Kriegsheim A, Collie-Duguid E, Vargesson N, Matallanas D, Wackerhage H, Zammit PS, (2017) "Common and Distinctive Functions of the Hippo Effectors Taz and Yap in Skeletal Muscle Stem Cell Function." <i>Stem Cells</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28589555 28589555]; doi: [https://dx.doi.org/10.1002/stem.2652 10.1002/stem.2652]; GPMDB: [http://gpmdb.org/data/keyword/28589555 36]. | ||
+ | #Zhang J, Lu S, Zhou Y, Meng K, Chen Z, Cui Y, Shi Y, Wang T, He QY, (2017) "Motile hepatocellular carcinoma cells preferentially secret sugar metabolism regulatory proteins via exosomes." <i>Proteomics</i> <b>17</b>(13-14):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28590090 28590090]; doi: [https://dx.doi.org/10.1002/pmic.201700103 10.1002/pmic.201700103]; GPMDB: [http://gpmdb.org/data/keyword/28590090 6]. | ||
+ | #Jensen SR, Schoof EM, Wheeler SE, Hvid H, Ahnfelt-Rønne J, Hansen BF, Nishimura E, Olsen GS, Kislinger T, Brubaker PL, (2017) "Quantitative Proteomics of Intestinal Mucosa From Male Mice Lacking Intestinal Epithelial Insulin Receptors." <i>Endocrinology</i> <b>158</b>(8):2470–2485; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28591806 28591806]; doi: [https://dx.doi.org/10.1210/en.2017-00194 10.1210/en.2017-00194]; GPMDB: [http://gpmdb.org/data/keyword/28591806 10]. | ||
+ | #Bekker-Jensen DB, Kelstrup CD, Batth TS, Larsen SC, Haldrup C, Bramsen JB, Sørensen KD, Høyer S, Ørntoft TF, Andersen CL, Nielsen ML, Olsen JV, (2017) "An Optimized Shotgun Strategy for the Rapid Generation of Comprehensive Human Proteomes." <i>Cell Syst</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28601559 28601559]; doi: [https://dx.doi.org/10.1016/j.cels.2017.05.009 10.1016/j.cels.2017.05.009]; GPMDB: [http://gpmdb.org/data/keyword/28601559 93]. | ||
+ | #Lapek JD Jr, Lewinski MK, Wozniak JM, Guatelli J, Gonzalez DJ, (2017) "Quantitative Temporal Viromics of an Inducible HIV-1 Model Yields Insight to Global Host Targets and Phospho-Dynamics Associated with Vpr." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28606917 28606917]; doi: [https://dx.doi.org/10.1074/mcp.M116.066019 10.1074/mcp.M116.066019]; GPMDB: [http://gpmdb.org/data/keyword/28606917 4]. | ||
+ | #Brocard L, Immel F, Coulon D, Esnay N, Tuphile K, Pascal S, Claverol S, Fouillen L, Bessoule JJ, Bréhélin C, (2017) "Proteomic Analysis of Lipid Droplets from Arabidopsis Aging Leaves Brings New Insight into Their Biogenesis and Functions." <i>Front Plant Sci</i> <b>8</b>:894; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28611809 28611809]; doi: [https://dx.doi.org/10.3389/fpls.2017.00894 10.3389/fpls.2017.00894]; GPMDB: [http://gpmdb.org/data/keyword/28611809 3]. | ||
+ | #Erdmann J, Junemann J, Schröder A, Just I, Gerhard R, Pich A, (2017) "Glucosyltransferase-dependent and -independent effects of TcdB on the proteome of HEp-2 cells." <i>Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28612519 28612519]; doi: [https://dx.doi.org/10.1002/pmic.201600435 10.1002/pmic.201600435]; GPMDB: [http://gpmdb.org/data/keyword/28612519 36]. | ||
+ | #Murgia M, Toniolo L, Nagaraj N, Ciciliot S, Vindigni V, Schiaffino S, Reggiani C, Mann M, (2017) "Single Muscle Fiber Proteomics Reveals Fiber-Type-Specific Features of Human Muscle Aging." <i>Cell Rep</i> <b>19</b>(11):2396–2409; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28614723 28614723]; doi: [https://dx.doi.org/10.1016/j.celrep.2017.05.054 10.1016/j.celrep.2017.05.054]; GPMDB: [http://gpmdb.org/data/keyword/28614723 174]. | ||
+ | #Plenker D, Riedel M, Brägelmann J, Dammert MA, Chauhan R, Knowles PP, Lorenz C, Keul M, Bührmann M, Pagel O, Tischler V, Scheel AH, Schütte D, Song Y, Stark J, Mrugalla F, Alber Y, Richters A, Engel J, Leenders F, Heuckmann JM, Wolf J, Diebold J, Pall G, Peifer M, Aerts M, Gevaert K, Zahedi RP, Buettner R, Shokat KM, McDonald NQ, Kast SM, Gautschi O, Thomas RK, Sos ML, (2017) "Drugging the catalytically inactive state of RET kinase in RET-rearranged tumors." <i>Sci Transl Med</i> <b>9</b>(394):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28615362 28615362]; doi: [https://dx.doi.org/10.1126/scitranslmed.aah6144 10.1126/scitranslmed.aah6144]; GPMDB: [http://gpmdb.org/data/keyword/28615362 17]. | ||
+ | #Marx H, Hahne H, Ulbrich SE, Schnieke A, Rottmann O, Frishman D, Kuster B, (2017) "Annotation of the Domestic Pig Genome by Quantitative Proteogenomics." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28625053 28625053]; doi: [https://dx.doi.org/10.1021/acs.jproteome.7b00184 10.1021/acs.jproteome.7b00184]; GPMDB: [http://gpmdb.org/data/keyword/28625053 181]. | ||
+ | #Wang J, Mouradov D, Wang X, Jorissen RN, Chambers MC, Zimmerman LJ, Vasaikar S, Love CG, Li S, Lowes K, Leuchowius KJ, Jousset H, Weinstock J, Yau C, Mariadason J, Shi Z, Ban Y, Chen X, Coffey RJC, Slebos RJC, Burgess AW, Liebler DC, Zhang B, Sieber OM, (2017) "Colorectal Cancer Cell Line Proteomes are Representative of Primary Tumors and Predict Drug Sensitivity." <i>Gastroenterology</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28625833 28625833]; doi: [https://dx.doi.org/10.1053/j.gastro.2017.06.008 10.1053/j.gastro.2017.06.008]; GPMDB: [http://gpmdb.org/data/keyword/28625833 44]. | ||
+ | #Taleb RSZ, Moez P, Younan D, Eisenacher M, Tenbusch M, Sitek B, Bracht T, (2017) "Quantitative proteome analysis of plasma microparticles for the characterization of HCV-induced hepatic cirrhosis and hepatocellular carcinoma." <i>Proteomics Clin Appl</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28626882 28626882]; doi: [https://dx.doi.org/10.1002/prca.201700014 10.1002/prca.201700014]; GPMDB: [http://gpmdb.org/data/keyword/28626882 56]. | ||
+ | #Qin G, Dang M, Gao H, Wang H, Luo F, Chen R, (2017) "Deciphering the protein-protein interaction network regulating hepatocellular carcinoma metastasis." <i>Biochim Biophys Acta</i> <b>1865</b>(9):1114–1122; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28627476 28627476]; doi: [https://dx.doi.org/10.1016/j.bbapap.2017.06.005 10.1016/j.bbapap.2017.06.005]; GPMDB: [http://gpmdb.org/data/keyword/28627476 6]. | ||
+ | #Sung E, Kwon OK, Lee JM, Lee S, (2017) "Proteomics approach to identify novel metastatic bone markers from the secretome of PC-3 prostate cancer cells." <i>Electrophoresis</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28627741 28627741]; doi: [https://dx.doi.org/10.1002/elps.201700052 10.1002/elps.201700052]; GPMDB: [http://gpmdb.org/data/keyword/28627741 2]. | ||
+ | #Loke I, Østergaard O, Heegaard NHH, Packer NH, Thaysen-Andersen M, (2017) "Paucimannose-Rich <i>N</i>-glycosylation of Spatiotemporally Regulated Human Neutrophil Elastase Modulates Its Immune Functions." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28630087 28630087]; doi: [https://dx.doi.org/10.1074/mcp.M116.066746 10.1074/mcp.M116.066746]; GPMDB: [http://gpmdb.org/data/keyword/28630087 118]. | ||
+ | #Feil G, Horres R, Schulte J, Mack AF, Petzoldt S, Arnold C, Meng C, Jost L, Boxleitner J, Kiessling-Wolf N, Serbest E, Helm D, Kuster B, Hartmann I, Korff T, Hahne H, (2017) "Bacterial cellulose shifts transcriptome and proteome of cultured endothelial cells towards native differentiation." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28637836 28637836]; doi: [https://dx.doi.org/10.1074/mcp.RA117.000001 10.1074/mcp.RA117.000001]; GPMDB: [http://gpmdb.org/data/keyword/28637836 2]. | ||
+ | #Cosme J, Guo H, Hadipour-Lakmehsari S, Emili A, Gramolini AO, (2017) "Hypoxia-Induced Changes in the Fibroblast Secretome, Exosome, and Whole-Cell Proteome Using Cultured, Cardiac-Derived Cells Isolated from Neonatal Mice." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28641008 28641008]; doi: [https://dx.doi.org/10.1021/acs.jproteome.7b00144 10.1021/acs.jproteome.7b00144]; GPMDB: [http://gpmdb.org/data/keyword/28641008 39]. | ||
+ | #Belmont J, Gu T, Mudd A, Salomon AR, (2017) "A PLC-γ1 Feedback Pathway Regulates Lck Substrate Phosphorylation at the T-Cell Receptor and SLP-76 Complex." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28644030 28644030]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b01026 10.1021/acs.jproteome.6b01026]; GPMDB: [http://gpmdb.org/data/keyword/28644030 60]. | ||
+ | #Gu Y, Albuquerque CP, Braas D, Zhang W, Villa GR, Bi J, Ikegami S, Masui K, Gini B, Yang H, Gahman TC, Shiau AK, Cloughesy TF, Christofk HR, Zhou H, Guan KL, Mischel PS, (2017) "mTORC2 Regulates Amino Acid Metabolism in Cancer by Phosphorylation of the Cystine-Glutamate Antiporter xCT." <i>Mol Cell</i> <b>67</b>(1):128–138.e7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28648777 28648777]; doi: [https://dx.doi.org/10.1016/j.molcel.2017.05.030 10.1016/j.molcel.2017.05.030]; GPMDB: [http://gpmdb.org/data/keyword/28648777 2]. | ||
+ | #Flury V, Georgescu PR, Iesmantavicius V, Shimada Y, Kuzdere T, Braun S, Bühler M, (2017) "The Histone Acetyltransferase Mst2 Protects Active Chromatin from Epigenetic Silencing by Acetylating the Ubiquitin Ligase Brl1." <i>Mol Cell</i> <b>67</b>(2):294–307.e9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28648780 28648780]; doi: [https://dx.doi.org/10.1016/j.molcel.2017.05.026 10.1016/j.molcel.2017.05.026]; GPMDB: [http://gpmdb.org/data/keyword/28648780 50]. | ||
+ | #Morgenstern M, Stiller SB, Lübbert P, Peikert CD, Dannenmaier S, Drepper F, Weill U, Höß P, Feuerstein R, Gebert M, Bohnert M, van der Laan M, Schuldiner M, Schütze C, Oeljeklaus S, Pfanner N, Wiedemann N, Warscheid B, (2017) "Definition of a High-Confidence Mitochondrial Proteome at Quantitative Scale." <i>Cell Rep</i> <b>19</b>(13):2836–2852; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28658629 28658629]; doi: [https://dx.doi.org/10.1016/j.celrep.2017.06.014 10.1016/j.celrep.2017.06.014]; GPMDB: [http://gpmdb.org/data/keyword/28658629 697]. | ||
+ | #Govaert E, Van Steendam K, Willems S, Vossaert L, Dhaenens M, Deforce D, (2017) "Comparison of fractionation proteomics for local SWATH library building." <i>Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28664598 28664598]; doi: [https://dx.doi.org/10.1002/pmic.201700052 10.1002/pmic.201700052]; GPMDB: [http://gpmdb.org/data/keyword/28664598 4]. | ||
+ | #Sap KA, Bezstarosti K, Dekkers DHW, Voets O, Demmers JAA, (2017) "Quantitative Proteomics Reveals Extensive Changes in the Ubiquitinome after Perturbation of the Proteasome by Targeted dsRNA-Mediated Subunit Knockdown in Drosophila." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28665616 28665616]; doi: [https://dx.doi.org/10.1021/acs.jproteome.7b00156 10.1021/acs.jproteome.7b00156]; GPMDB: [http://gpmdb.org/data/keyword/28665616 290]. | ||
+ | #Hulme CH, Wilson EL, Peffers MJ, Roberts S, Simpson DM, Richardson JB, Gallacher P, Wright KT, (2017) "Autologous chondrocyte implantation-derived synovial fluids display distinct responder and non-responder proteomic profiles." <i>Arthritis Res Ther</i> <b>19</b>(1):150; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28666451 28666451]; doi: [https://dx.doi.org/10.1186/s13075-017-1336-7 10.1186/s13075-017-1336-7]; GPMDB: [http://gpmdb.org/data/keyword/28666451 37]. | ||
+ | #Kim JH, Nam WS, Kim SJ, Kwon OK, Seung EJ, Jo JJ, Shresha R, Lee TH, Jeon TW, Ki SH, Lee HS, Lee S, (2017) "Mechanism Investigation of Rifampicin-Induced Liver Injury Using Comparative Toxicoproteomics in Mice." <i>Int J Mol Sci</i> <b>18</b>(7):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28671602 28671602]; doi: [https://dx.doi.org/10.3390/ijms18071417 10.3390/ijms18071417]; GPMDB: [http://gpmdb.org/data/keyword/28671602 10]. | ||
+ | #Liu F, Meng H, Fitzgerald MC, (2017) "Large-Scale Analysis of Breast Cancer-Related Conformational Changes in Proteins Using SILAC-SPROX." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28673085 28673085]; doi: [https://dx.doi.org/10.1021/acs.jproteome.7b00283 10.1021/acs.jproteome.7b00283]; GPMDB: [http://gpmdb.org/data/keyword/28673085 6]. | ||
+ | #Bleuyard JY, Fournier M, Nakato R, Couturier AM, Katou Y, Ralf C, Hester SS, Dominguez D, Rhodes D, Humphrey TC, Shirahige K, Esashi F, (2017) "MRG15-mediated tethering of PALB2 to unperturbed chromatin protects active genes from genotoxic stress." <i>Proc Natl Acad Sci U S A</i> <b>114</b>(29):7671–7676; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28673974 28673974]; doi: [https://dx.doi.org/10.1073/pnas.1620208114 10.1073/pnas.1620208114]; GPMDB: [http://gpmdb.org/data/keyword/28673974 6]. | ||
+ | #Panizza E, Branca RMM, Oliviusson P, Orre LM, Lehtiö J, (2017) "Isoelectric point-based fractionation by HiRIEF coupled to LC-MS allows for in-depth quantitative analysis of the phosphoproteome." <i>Sci Rep</i> <b>7</b>(1):4513; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28674419 28674419]; doi: [https://dx.doi.org/10.1038/s41598-017-04798-z 10.1038/s41598-017-04798-z]; GPMDB: [http://gpmdb.org/data/keyword/28674419 133]. | ||
+ | #Yang J, Yin L, Lessner FH, Nakayasu ES, Payne SH, Fixen KR, Gallagher L, Harwood CS, (2017) "Genes essential for phototrophic growth by a purple alphaproteobacterium." <i>Environ Microbiol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28677146 28677146]; doi: [https://dx.doi.org/10.1111/1462-2920.13852 10.1111/1462-2920.13852]; GPMDB: [http://gpmdb.org/data/keyword/28677146 6]. | ||
+ | #Miikkulainen P, Högel H, Rantanen K, Suomi T, Kouvonen P, Elo LL, Jaakkola PM, (2017) "HIF prolyl hydroxylase PHD3 regulates translational machinery and glucose metabolism in clear cell renal cell carcinoma." <i>Cancer Metab</i> <b>5</b>:5; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28680592 28680592]; doi: [https://dx.doi.org/10.1186/s40170-017-0167-y 10.1186/s40170-017-0167-y]; GPMDB: [http://gpmdb.org/data/keyword/28680592 12]. | ||
+ | #Zwittink RD, van Zoeren-Grobben D, Martin R, van Lingen RA, Groot Jebbink LJ, Boeren S, Renes IB, van Elburg RM, Belzer C, Knol J, (2017) "Metaproteomics reveals functional differences in intestinal microbiota development of preterm infants." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28684633 28684633]; doi: [https://dx.doi.org/10.1074/mcp.RA117.000102 10.1074/mcp.RA117.000102]; GPMDB: [http://gpmdb.org/data/keyword/28684633 65]. | ||
+ | #Djuric U, Rodrigues DC, Batruch I, Ellis J, Shannon P, Diamandis P, (2017) "Spatiotemporal proteomic profiling of human cerebral development." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28687556 28687556]; doi: [https://dx.doi.org/10.1074/mcp.M116.066274 10.1074/mcp.M116.066274]; GPMDB: [http://gpmdb.org/data/keyword/28687556 99]. | ||
+ | #Bryk AH, Wiśniewski JR, (2017) "Quantitative Analysis of Human Red Blood Cell Proteome." <i>J Proteome Res</i> <b>16</b>(8):2752–2761; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28689405 28689405]; doi: [https://dx.doi.org/10.1021/acs.jproteome.7b00025 10.1021/acs.jproteome.7b00025]; GPMDB: [http://gpmdb.org/data/keyword/28689405 96]. | ||
+ | #Reid SE, Kay EJ, Neilson LJ, Henze AT, Serneels J, McGhee EJ, Dhayade S, Nixon C, Mackey JB, Santi A, Swaminathan K, Athineos D, Papalazarou V, Patella F, Román-Fernández Á, ElMaghloob Y, Hernandez-Fernaud JR, Adams RH, Ismail S, Bryant DM, Salmeron-Sanchez M, Machesky LM, Carlin LM, Blyth K, Mazzone M, Zanivan S, (2017) "Tumor matrix stiffness promotes metastatic cancer cell interaction with the endothelium." <i>EMBO J</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28694244 28694244]; doi: [https://dx.doi.org/10.15252/embj.201694912 10.15252/embj.201694912]; GPMDB: [http://gpmdb.org/data/keyword/28694244 19]. | ||
+ | #Ovelleiro D, Blanco S, Hernández R, Peinado MÁ, (2017) "Comparative proteomic study of early hypoxic response in the cerebral cortex of rats submitted to two different hypoxic models." <i>Proteomics Clin Appl</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28697276 28697276]; doi: [https://dx.doi.org/10.1002/prca.201700058 10.1002/prca.201700058]; GPMDB: [http://gpmdb.org/data/keyword/28697276 19]. | ||
+ | #Zhang X, Li L, Mayne J, Ning Z, Stintzi A, Figeys D, (2017) "Assessing the impact of protein extraction methods for human gut metaproteomics." <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28705725 28705725]; doi: [https://dx.doi.org/10.1016/j.jprot.2017.07.001 10.1016/j.jprot.2017.07.001]; GPMDB: [http://gpmdb.org/data/keyword/28705725 30]. | ||
+ | #Kohli P, Höhne M, Jüngst C, Bertsch S, Ebert LK, Schauss AC, Benzing T, Rinschen MM, Schermer B, (2017) "The ciliary membrane-associated proteome reveals actin-binding proteins as key components of cilia." <i>EMBO Rep</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28710093 28710093]; doi: [https://dx.doi.org/10.15252/embr.201643846 10.15252/embr.201643846]; GPMDB: [http://gpmdb.org/data/keyword/28710093 20]. | ||
+ | #Hongliang L, Lei Z, Qing W, Zhaopeng S, Xiaoyan S, Juan D, Chenyang H, Yong Z, Zekun G, (2017) "Comprehensive Proteomic Analysis of PGC7-Interacting Proteins." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28712289 28712289]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00883 10.1021/acs.jproteome.6b00883]; GPMDB: [http://gpmdb.org/data/keyword/28712289 10]. | ||
+ | #Chai H, Diaz-Castro B, Shigetomi E, Monte E, Octeau JC, Yu X, Cohn W, Rajendran PS, Vondriska TM, Whitelegge JP, Coppola G, Khakh BS, (2017) "Neural Circuit-Specialized Astrocytes: Transcriptomic, Proteomic, Morphological, and Functional Evidence." <i>Neuron</i> <b>95</b>(3):531–549.e9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28712653 28712653]; doi: [https://dx.doi.org/10.1016/j.neuron.2017.06.029 10.1016/j.neuron.2017.06.029]; GPMDB: [http://gpmdb.org/data/keyword/28712653 4]. | ||
+ | #Vukotic M, Nolte H, König T, Saita S, Ananjew M, Krüger M, Tatsuta T, Langer T, (2017) "Acylglycerol Kinase Mutated in Sengers Syndrome Is a Subunit of the TIM22 Protein Translocase in Mitochondria." <i>Mol Cell</i> <b>67</b>(3):471–483.e7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28712724 28712724]; doi: [https://dx.doi.org/10.1016/j.molcel.2017.06.013 10.1016/j.molcel.2017.06.013]; GPMDB: [http://gpmdb.org/data/keyword/28712724 59]. | ||
+ | #Alfieri A, Sorokina O, Adrait A, Angelini C, Russo I, Morellato A, Matteoli M, Menna E, Boeri Erba E, McLean C, Armstrong JD, Ala U, Buxbaum JD, Brusco A, Couté Y, De Rubeis S, Turco E, Defilippi P, (2017) "Synaptic Interactome Mining Reveals p140Cap as a New Hub for PSD Proteins Involved in Psychiatric and Neurological Disorders." <i>Front Mol Neurosci</i> <b>10</b>:212; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28713243 28713243]; doi: [https://dx.doi.org/10.3389/fnmol.2017.00212 10.3389/fnmol.2017.00212]; GPMDB: [http://gpmdb.org/data/keyword/28713243 12]. | ||
+ | #Poppleton DI, Duchateau M, Hourdel V, Matondo M, Flechsler J, Klingl A, Beloin C, Gribaldo S, (2017) "Outer Membrane Proteome of <i>Veillonella parvula:</i> A Diderm Firmicute of the Human Microbiome." <i>Front Microbiol</i> <b>8</b>:1215; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28713344 28713344]; doi: [https://dx.doi.org/10.3389/fmicb.2017.01215 10.3389/fmicb.2017.01215]; GPMDB: [http://gpmdb.org/data/keyword/28713344 16]. | ||
+ | #Lee HJ, Jedrychowski MP, Vinayagam A, Wu N, Shyh-Chang N, Hu Y, Min-Wen C, Moore JK, Asara JM, Lyssiotis CA, Perrimon N, Gygi SP, Cantley LC, Kirschner MW, (2017) "Proteomic and Metabolomic Characterization of a Mammalian Cellular Transition from Quiescence to Proliferation." <i>Cell Rep</i> <b>20</b>(3):721–736; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28723573 28723573]; doi: [https://dx.doi.org/10.1016/j.celrep.2017.06.074 10.1016/j.celrep.2017.06.074]; GPMDB: [http://gpmdb.org/data/keyword/28723573 2]. | ||
+ | #La Barbera G, Capriotti AL, Michelini E, Piovesana S, Calabretta MM, Chiozzi RZ, Roda A, Laganà A, (2017) "Proteomic analysis and bioluminescent reporter gene assays to investigate effects of simulated microgravity on Caco-2 cells." <i>Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28727291 28727291]; doi: [https://dx.doi.org/10.1002/pmic.201700081 10.1002/pmic.201700081]; GPMDB: [http://gpmdb.org/data/keyword/28727291 13]. | ||
+ | #Mir SA, Renuse S, Sathe G, Khan AA, Patil AH, Nanjappa V, Bhat FA, Prasad TSK, Giri AK, Chatterjee A, Gowda H, (2017) "Altered signaling associated with chronic arsenic exposure in human skin keratinocytes." <i>Proteomics Clin Appl</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28731282 28731282]; doi: [https://dx.doi.org/10.1002/prca.201700004 10.1002/prca.201700004]; GPMDB: [http://gpmdb.org/data/keyword/28731282 2]. | ||
+ | #Maffioli E, Nonnis S, Angioni R, Santagata F, Calì B, Zanotti L, Negri A, Viola A, Tedeschi G, (2017) "Proteomic analysis of the secretome of human bone marrow-derived mesenchymal stem cells primed by pro-inflammatory cytokines." <i>J Proteomics</i> <b>166</b>:115–126; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28739509 28739509]; doi: [https://dx.doi.org/10.1016/j.jprot.2017.07.012 10.1016/j.jprot.2017.07.012]; GPMDB: [http://gpmdb.org/data/keyword/28739509 20]. | ||
+ | #Hau AC, Grebbin BM, Agoston Z, Anders-Maurer M, Müller T, Groß A, Kolb J, Langer JD, Döring C, Schulte D, (2017) "MEIS homeodomain proteins facilitate PARP1/ARTD1-mediated eviction of histone H1." <i>J Cell Biol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28739678 28739678]; doi: [https://dx.doi.org/10.1083/jcb.201701154 10.1083/jcb.201701154]; GPMDB: [http://gpmdb.org/data/keyword/28739678 6]. | ||
+ | #D'Angelo G, Chaerkady R, Yu W, Hizal DB, Hess S, Zhao W, Lekstrom K, Guo X, White WI, Roskos L, Bowen MA, Yang H, (2017) "Statistical models for the analysis of isobaric tags multiplexed quantitative proteomics." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28745510 28745510]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b01050 10.1021/acs.jproteome.6b01050]; GPMDB: [http://gpmdb.org/data/keyword/28745510 5]. | ||
+ | #Komor MA, Pham T, Hiemstra AC, Piersma SR, Bolijn AS, Schelfhorst T, Delis-van Diemen PM, Tijssen M, Sebra RP, Ashby M, Meijer GA, Jimenez CR, Fijneman RJA, (2017) "Identification of differentially expressed splice variants by the proteogenomic pipeline Splicify." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28747380 28747380]; doi: [https://dx.doi.org/10.1074/mcp.TIR117.000056 10.1074/mcp.TIR117.000056]; GPMDB: [http://gpmdb.org/data/keyword/28747380 14]. | ||
+ | #Zhang X, Chen W, Ning Z, Mayne J, Mack D, Stintzi A, Tian R, Figeys D, (2017) "Deep Metaproteomics Approach for the Study of Human Microbiomes." <i>Anal Chem</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28749657 28749657]; doi: [https://dx.doi.org/10.1021/acs.analchem.7b02224 10.1021/acs.analchem.7b02224]; GPMDB: [http://gpmdb.org/data/keyword/28749657 43]. | ||
+ | #Haderk F, Schulz R, Iskar M, Cid LL, Worst T, Willmund KV, Schulz A, Warnken U, Seiler J, Benner A, Nessling M, Zenz T, Göbel M, Dürig J, Diederichs S, Paggetti J, Moussay E, Stilgenbauer S, Zapatka M, Lichter P, Seiffert M, (2017) "Tumor-derived exosomes modulate PD-L1 expression in monocytes." <i>Sci Immunol</i> <b>2</b>(13):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28754746 28754746]; doi: [https://dx.doi.org/10.1126/sciimmunol.aah5509 10.1126/sciimmunol.aah5509]; GPMDB: [http://gpmdb.org/data/keyword/28754746 32]. | ||
+ | #Singh KD, Zheng X, Milstein S, Keller M, Roschitzki B, Grossmann J, Hengartner MO, (2017) "Differential regulation of germ line apoptosis and germ cell differentiation by CPEB family members in C. elegans." <i>PLoS One</i> <b>12</b>(7):e0182270; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28759574 28759574]; doi: [https://dx.doi.org/10.1371/journal.pone.0182270 10.1371/journal.pone.0182270]; GPMDB: [http://gpmdb.org/data/keyword/28759574 6]. | ||
+ | #Gómez-Baena G, Bennett RJ, Martínez-Rodríguez C, Wnęk M, Laing G, Hickey G, McLean L, Beynon RJ, Carrol ED, (2017) "Quantitative Proteomics of Cerebrospinal Fluid in Paediatric Pneumococcal Meningitis." <i>Sci Rep</i> <b>7</b>(1):7042; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28765563 28765563]; doi: [https://dx.doi.org/10.1038/s41598-017-07127-6 10.1038/s41598-017-07127-6]; GPMDB: [http://gpmdb.org/data/keyword/28765563 28]. | ||
+ | #Fabiani FD, Renault TT, Peters B, Dietsche T, Gálvez EJC, Guse A, Freier K, Charpentier E, Strowig T, Franz-Wachtel M, Macek B, Wagner S, Hensel M, Erhardt M, (2017) "A flagellum-specific chaperone facilitates assembly of the core type III export apparatus of the bacterial flagellum." <i>PLoS Biol</i> <b>15</b>(8):e2002267; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28771474 28771474]; doi: [https://dx.doi.org/10.1371/journal.pbio.2002267 10.1371/journal.pbio.2002267]; GPMDB: [http://gpmdb.org/data/keyword/28771474 26]. | ||
+ | #Nguyen AT, Prado MA, Schmidt PJ, Sendamarai AK, Wilson-Grady JT, Min M, Campagna DR, Tian G, Shi Y, Dederer V, Kawan M, Kuehnle N, Paulo JA, Yao Y, Weiss MJ, Justice MJ, Gygi SP, Fleming MD, Finley D, (2017) "UBE2O remodels the proteome during terminal erythroid differentiation." <i>Science</i> <b>357</b>(6350):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28774900 28774900]; doi: [https://dx.doi.org/10.1126/science.aan0218 10.1126/science.aan0218]; GPMDB: [http://gpmdb.org/data/keyword/28774900 13]. | ||
+ | #Khan MH, Salomaa SI, Jacquemet G, Butt U, Miihkinen M, Deguchi T, Kremneva E, Lappalainen P, Humphries MJ, Pouwels J, (2017) "The Sharpin interactome reveals a role for Sharpin in lamellipodium formation via the Arp2/3 complex." <i>J Cell Sci</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28775156 28775156]; doi: [https://dx.doi.org/10.1242/jcs.200329 10.1242/jcs.200329]; GPMDB: [http://gpmdb.org/data/keyword/28775156 51]. | ||
+ | #Woo J, Han D, Wang JI, Park J, Kim H, Kim Y, (2017) "Quantitative Proteomics Reveals Temporal Proteomic Changes in Signaling Pathways during BV2 Mouse Microglial Cell Activation." <i>J Proteome Res</i> <b>16</b>(9):3419–3432; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28777000 28777000]; doi: [https://dx.doi.org/10.1021/acs.jproteome.7b00445 10.1021/acs.jproteome.7b00445]; GPMDB: [http://gpmdb.org/data/keyword/28777000 18]. | ||
+ | #Danielsen HN, Hansen SH, Herbst FA, Kjeldal H, Stensballe A, Nielsen PH, Dueholm MS, (2017) "Direct Identification of Functional Amyloid Proteins by Label-Free Quantitative Mass Spectrometry." <i>Biomolecules</i> <b>7</b>(3):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28777328 28777328]; doi: [https://dx.doi.org/10.3390/biom7030058 10.3390/biom7030058]; GPMDB: [http://gpmdb.org/data/keyword/28777328 24]. | ||
+ | #Wang X, Mooradian AD, Erdmann-Gilmore P, Zhang Q, Viner R, Davies SR, Huang KL, Bomgarden R, Van Tine BA, Shao J, Ding L, Li S, Ellis MJ, Rogers JC, Townsend RR, Fenyö D, Held JM, (2017) "Breast tumors educate the proteome of stromal tissue in an individualized but coordinated manner." <i>Sci Signal</i> <b>10</b>(491):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28790197 28790197]; doi: [https://dx.doi.org/10.1126/scisignal.aam8065 10.1126/scisignal.aam8065]; GPMDB: [http://gpmdb.org/data/keyword/28790197 10]. | ||
+ | #Dong M, Bian Y, Wang Y, Dong J, Yao Y, Deng Z, Qin H, Zou H, Ye M, (2017) "Sensitive, Robust, and Cost-Effective Approach for Tyrosine Phosphoproteome Analysis." <i>Anal Chem</i> <b>89</b>(17):9307–9314; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28796482 28796482]; doi: [https://dx.doi.org/10.1021/acs.analchem.7b02078 10.1021/acs.analchem.7b02078]; GPMDB: [http://gpmdb.org/data/keyword/28796482 24]. | ||
+ | #Anselm V, Novikova S, Zgoda V, (2017) "Re-adaption on Earth after Spaceflights Affects the Mouse Liver Proteome." <i>Int J Mol Sci</i> <b>18</b>(8):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28805685 28805685]; doi: [https://dx.doi.org/10.3390/ijms18081763 10.3390/ijms18081763]; GPMDB: [http://gpmdb.org/data/keyword/28805685 28]. | ||
+ | #Barbé C, Bray F, Gueugneau M, Devassine S, Lause P, Tokarski C, Rolando C, Thissen JP, (2017) "Comparative Proteomic and Transcriptomic Analysis of Follistatin-Induced Skeletal Muscle Hypertrophy." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28810121 28810121]; doi: [https://dx.doi.org/10.1021/acs.jproteome.7b00069 10.1021/acs.jproteome.7b00069]; GPMDB: [http://gpmdb.org/data/keyword/28810121 72]. | ||
+ | #Cortes T, Schubert OT, Banaei-Esfahani A, Collins BC, Aebersold R, Young DB, (2017) "Delayed effects of transcriptional responses in Mycobacterium tuberculosis exposed to nitric oxide suggest other mechanisms involved in survival." <i>Sci Rep</i> <b>7</b>(1):8208; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28811595 28811595]; doi: [https://dx.doi.org/10.1038/s41598-017-08306-1 10.1038/s41598-017-08306-1]; GPMDB: [http://gpmdb.org/data/keyword/28811595 30]. | ||
+ | #Pardo M, Yu L, Shen S, Tate P, Bode D, Letney BL, Quelle DE, Skarnes W, Choudhary JS, (2017) "Myst2/Kat7 histone acetyltransferase interaction proteomics reveals tumour-suppressor Niam as a novel binding partner in embryonic stem cells." <i>Sci Rep</i> <b>7</b>(1):8157; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28811661 28811661]; doi: [https://dx.doi.org/10.1038/s41598-017-08456-2 10.1038/s41598-017-08456-2]; GPMDB: [http://gpmdb.org/data/keyword/28811661 236]. | ||
+ | #Park J, Han D, Do M, Woo J, Wang JI, Han Y, Kwon W, Kim SW, Jang JY, Kim Y, (2017) "Proteome Characterization of Human Pancreatic Cyst Fluid from Intraductal Papillary Mucinous Neoplasm by LC/MS/MS." <i>Rapid Commun Mass Spectrom</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28815810 28815810]; doi: [https://dx.doi.org/10.1002/rcm.7959 10.1002/rcm.7959]; GPMDB: [http://gpmdb.org/data/keyword/28815810 60]. | ||
+ | #Dammalli M, Dey G, Madugundu AK, Kumar M, Rodrigues B, Gowda H, Siddaiah BG, Mahadevan A, Shankar SK, Prasad TSK, (2017) "Proteomic Analysis of the Human Olfactory Bulb." <i>OMICS</i> <b>21</b>(8):440–453; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28816642 28816642]; doi: [https://dx.doi.org/10.1089/omi.2017.0084 10.1089/omi.2017.0084]; GPMDB: [http://gpmdb.org/data/keyword/28816642 2]. | ||
+ | #van den Eshof BL, Hoogendijk AJ, Simpson PJ, van Alphen FPJ, Zanivan S, Mertens K, Meijer AB, van den Biggelaar M, (2017) "Paradigm of Biased PAR1 (Protease-Activated Receptor-1) Activation and Inhibition in Endothelial Cells Dissected by Phosphoproteomics." <i>Arterioscler Thromb Vasc Biol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28818855 28818855]; doi: [https://dx.doi.org/10.1161/ATVBAHA.117.309926 10.1161/ATVBAHA.117.309926]; GPMDB: [http://gpmdb.org/data/keyword/28818855 57]. | ||
+ | #Ayre DC, Chute IC, Joy AP, Barnett DA, Hogan AM, Grüll MP, Peña-Castillo L, Lang AS, Lewis SM, Christian SL, (2017) "CD24 induces changes to the surface receptors of B cell microvesicles with variable effects on their RNA and protein cargo." <i>Sci Rep</i> <b>7</b>(1):8642; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28819186 28819186]; doi: [https://dx.doi.org/10.1038/s41598-017-08094-8 10.1038/s41598-017-08094-8]; GPMDB: [http://gpmdb.org/data/keyword/28819186 146]. | ||
+ | #Hung CL, Pan SH, Han CL, Chang CW, Hsu YL, Su CH, Shih SC, Lai YJ, Chiang Chiau JS, Yeh HI, Liu CY, Lee HC, Lam CSP, (2017) "Membrane Proteomics of Impaired Energetics and Cytoskeletal Disorganization in Elderly Diet-Induced Diabetic Mice." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28823169 28823169]; doi: [https://dx.doi.org/10.1021/acs.jproteome.7b00148 10.1021/acs.jproteome.7b00148]; GPMDB: [http://gpmdb.org/data/keyword/28823169 14]. | ||
+ | #Fu L, Liu KK, Sun MA, Tian CP, Sun R, Morales Betanzos C, Tallman KA, Porter NA, Yang Y, Guo DJ, Liebler DC, Yang J, (2017) "Systematic and quantitative assessment of hydrogen peroxide reactivity with cysteines across human proteomes." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28827280 28827280]; doi: [https://dx.doi.org/10.1074/mcp.RA117.000108 10.1074/mcp.RA117.000108]; GPMDB: [http://gpmdb.org/data/keyword/28827280 12]. | ||
+ | #Phillips TJ, Scott H, Menassa DA, Bignell AL, Sood A, Morton JS, Akagi T, Azuma K, Rogers MF, Gilmore CE, Inman GJ, Grant S, Chung Y, Aljunaidy MM, Cooke CL, Steinkraus BR, Pocklington A, Logan A, Collett GP, Kemp H, Holmans PA, Murphy MP, Fulga TA, Coney AM, Akashi M, Davidge ST, Case CP, (2017) "Treating the placenta to prevent adverse effects of gestational hypoxia on fetal brain development." <i>Sci Rep</i> <b>7</b>(1):9079; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28831049 28831049]; doi: [https://dx.doi.org/10.1038/s41598-017-06300-1 10.1038/s41598-017-06300-1]; GPMDB: [http://gpmdb.org/data/keyword/28831049 1]. | ||
+ | #Vyse S, McCarthy F, Broncel M, Paul A, Wong JP, Bhamra A, Huang PH, (2017) "Quantitative phosphoproteomic analysis of acquired cancer drug resistance to pazopanib and dasatinib." <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28842319 28842319]; doi: [https://dx.doi.org/10.1016/j.jprot.2017.08.015 10.1016/j.jprot.2017.08.015]; GPMDB: [http://gpmdb.org/data/keyword/28842319 42]. | ||
+ | #Wildburger NC, Esparza TJ, LeDuc RD, Fellers RT, Thomas PM, Cairns NJ, Kelleher NL, Bateman RJ, Brody DL, (2017) "Diversity of Amyloid-beta Proteoforms in the Alzheimer's Disease Brain." <i>Sci Rep</i> <b>7</b>(1):9520; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28842697 28842697]; doi: [https://dx.doi.org/10.1038/s41598-017-10422-x 10.1038/s41598-017-10422-x]; GPMDB: [http://gpmdb.org/data/keyword/28842697 22]. | ||
+ | #Andersen PR, Tirian L, Vunjak M, Brennecke J, (2017) "A heterochromatin-dependent transcription machinery drives piRNA expression." <i>Nature</i> <b>549</b>(7670):54–59; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28847004 28847004]; doi: [https://dx.doi.org/10.1038/nature23482 10.1038/nature23482]; GPMDB: [http://gpmdb.org/data/keyword/28847004 46]. | ||
+ | #Mohl BP, Emmott E, Roy P, (2017) "Phosphoproteomic analysis reveals the importance of kinase regulation during orbivirus infection." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28851738 28851738]; doi: [https://dx.doi.org/10.1074/mcp.M117.067355 10.1074/mcp.M117.067355]; GPMDB: [http://gpmdb.org/data/keyword/28851738 6]. | ||
+ | #Merkley ED, Sego LH, Lin A, Leiser OP, Kaiser BLD, Adkins JN, Keim PS, Wagner DM, Kreuzer HW, (2017) "Protein abundances can distinguish between naturally-occurring and laboratory strains of Yersinia pestis, the causative agent of plague." <i>PLoS One</i> <b>12</b>(8):e0183478; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28854255 28854255]; doi: [https://dx.doi.org/10.1371/journal.pone.0183478 10.1371/journal.pone.0183478]; GPMDB: [http://gpmdb.org/data/keyword/28854255 343]. | ||
+ | #Peng X, Xu F, Liu S, Li S, Huang Q, Chang L, Wang L, Ma X, He F, Xu P, (2017) "Identification of Missing Proteins in the Phosphoproteome of Kidney Cancer." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28857561 28857561]; doi: [https://dx.doi.org/10.1021/acs.jproteome.7b00332 10.1021/acs.jproteome.7b00332]; GPMDB: [http://gpmdb.org/data/keyword/28857561 17]. | ||
+ | #Subramanian K, Rauniyar N, Lavalleé-Adam M, Yates JR 3rd, Balch WE, (2017) "Quantitative Analysis of the Proteome Response to the Histone Deacetylase Inhibitor (HDACi) Vorinostat in Niemann-Pick Type C1 disease." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28860124 28860124]; doi: [https://dx.doi.org/10.1074/mcp.M116.064949 10.1074/mcp.M116.064949]; GPMDB: [http://gpmdb.org/data/keyword/28860124 7]. | ||
+ | #Rossello J, Lima A, Gil M, Rodríguez Duarte J, Correa A, Carvalho PC, Kierbel A, Durán R, (2017) "The EAL-domain protein FcsR regulates flagella, chemotaxis and type III secretion system in Pseudomonas aeruginosa by a phosphodiesterase independent mechanism." <i>Sci Rep</i> <b>7</b>(1):10281; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28860517 28860517]; doi: [https://dx.doi.org/10.1038/s41598-017-09926-3 10.1038/s41598-017-09926-3]; GPMDB: [http://gpmdb.org/data/keyword/28860517 21]. | ||
+ | #Mendes M, Peláez-García A, López-Lucendo M, Bartolomé RA, Calviño E, Barderas R, Casal JI, (2017) "Mapping the spatial proteome of metastatic cells in colorectal cancer." <i>Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28861940 28861940]; doi: [https://dx.doi.org/10.1002/pmic.201700094 10.1002/pmic.201700094]; GPMDB: [http://gpmdb.org/data/keyword/28861940 200]. | ||
+ | #Tanabe Y, Naito Y, Vasuta C, Lee AK, Soumounou Y, Linhoff MW, Takahashi H, (2017) "IgSF21 promotes differentiation of inhibitory synapses via binding to neurexin2α." <i>Nat Commun</i> <b>8</b>(1):408; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28864826 28864826]; doi: [https://dx.doi.org/10.1038/s41467-017-00333-w 10.1038/s41467-017-00333-w]; GPMDB: [http://gpmdb.org/data/keyword/28864826 32]. | ||
+ | #Kraner ME, Müller C, Sonnewald U, (2017) "Comparative proteomic profiling of the Choline transporter-like1 (CHER1) mutant provides insights into plasmodesmata composition of fully developed Arabidopsis thaliana leaves." <i>Plant J</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28865150 28865150]; doi: [https://dx.doi.org/10.1111/tpj.13702 10.1111/tpj.13702]; GPMDB: [http://gpmdb.org/data/keyword/28865150 1]. | ||
+ | #Edupuganti RR, Geiger S, Lindeboom RGH, Shi H, Hsu PJ, Lu Z, Wang SY, Baltissen MPA, Jansen PWTC, Rossa M, Müller M, Stunnenberg HG, He C, Carell T, Vermeulen M, (2017) "N<sup>6</sup>-methyladenosine (m<sup>6</sup>A) recruits and repels proteins to regulate mRNA homeostasis." <i>Nat Struct Mol Biol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28869609 28869609]; doi: [https://dx.doi.org/10.1038/nsmb.3462 10.1038/nsmb.3462]; GPMDB: [http://gpmdb.org/data/keyword/28869609 40]. | ||
+ | #Liu MQ, Zeng WF, Fang P, Cao WQ, Liu C, Yan GQ, Zhang Y, Peng C, Wu JQ, Zhang XJ, Tu HJ, Chi H, Sun RX, Cao Y, Dong MQ, Jiang BY, Huang JM, Shen HL, Wong CCL, He SM, Yang PY, (2017) "pGlyco 2.0 enables precision N-glycoproteomics with comprehensive quality control and one-step mass spectrometry for intact glycopeptide identification." <i>Nat Commun</i> <b>8</b>(1):438; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28874712 28874712]; doi: [https://dx.doi.org/10.1038/s41467-017-00535-2 10.1038/s41467-017-00535-2]; GPMDB: [http://gpmdb.org/data/keyword/28874712 4]. | ||
+ | #Dittus L, Werner T, Muelbaier M, Bantscheff M, (2017) "Differential Kinobeads Profiling for Target Identification of Irreversible Kinase Inhibitors." <i>ACS Chem Biol</i> <b>12</b>(10):2515–2521; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28876896 28876896]; doi: [https://dx.doi.org/10.1021/acschembio.7b00617 10.1021/acschembio.7b00617]; GPMDB: [http://gpmdb.org/data/keyword/28876896 154]. | ||
+ | #Kälin S, Becker M, Ott VB, Serr I, Hosp F, Mollah MMH, Keipert S, Lamp D, Rohner-Jeanrenaud F, Flynn VK, Scherm MG, Nascimento LFR, Gerlach K, Popp V, Dietzen S, Bopp T, Krishnamurthy P, Kaplan MH, Serrano M, Woods SC, Tripal P, Palmisano R, Jastroch M, Blüher M, Wolfrum C, Weigmann B, Ziegler AG, Mann M, Tschöp MH, Daniel C, (2017) "A Stat6/Pten Axis Links Regulatory T Cells with Adipose Tissue Function." <i>Cell Metab</i> <b>26</b>(3):475–492.e7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28877454 28877454]; doi: [https://dx.doi.org/10.1016/j.cmet.2017.08.008 10.1016/j.cmet.2017.08.008]; GPMDB: [http://gpmdb.org/data/keyword/28877454 31]. | ||
+ | #Chen TW, Lee CC, Liu H, Wu CS, Pickering CR, Huang PJ, Wang J, Chang IY, Yeh YM, Chen CD, Li HP, Luo JD, Tan BC, Chan TEH, Hsueh C, Chu LJ, Chen YT, Zhang B, Yang CY, Wu CC, Hsu CW, See LC, Tang P, Yu JS, Liao WC, Chiang WF, Rodriguez H, Myers JN, Chang KP, Chang YS, (2017) "APOBEC3A is an oral cancer prognostic biomarker in Taiwanese carriers of an APOBEC deletion polymorphism." <i>Nat Commun</i> <b>8</b>(1):465; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28878238 28878238]; doi: [https://dx.doi.org/10.1038/s41467-017-00493-9 10.1038/s41467-017-00493-9]; GPMDB: [http://gpmdb.org/data/keyword/28878238 1]. | ||
+ | #Han B, Fang Y, Feng M, Hu H, Hao Y, Ma C, Huo X, Meng L, Zhang X, Wu F, Li J, (2017) "Brain Membrane Proteome and Phosphoproteome Reveal Molecular Basis Associating with Nursing and Foraging Behaviors of Honeybee Workers." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28879772 28879772]; doi: [https://dx.doi.org/10.1021/acs.jproteome.7b00371 10.1021/acs.jproteome.7b00371]; GPMDB: [http://gpmdb.org/data/keyword/28879772 47]. | ||
+ | #Phillips B, Titz B, Kogel U, Sharma D, Leroy P, Xiang Y, Vuillaume G, Lebrun S, Sciuscio D, Ho J, Nury C, Guedj E, Elamin A, Esposito M, Krishnan S, Schlage WK, Veljkovic E, Ivanov NV, Martin F, Peitsch MC, Hoeng J, Vanscheeuwijck P, (2017) "Toxicity of the main electronic cigarette components, propylene glycol, glycerin, and nicotine, in Sprague-Dawley rats in a 90-day OECD inhalation study complemented by molecular endpoints." <i>Food Chem Toxicol</i> <b>109</b>(Pt 1):315–332; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28882640 28882640]; doi: [https://dx.doi.org/10.1016/j.fct.2017.09.001 10.1016/j.fct.2017.09.001]; GPMDB: [http://gpmdb.org/data/keyword/28882640 36]. | ||
+ | #Pawellek A, Ryder U, Tammsalu T, King LJ, Kreinin H, Ly T, Hay RT, Hartley RC, Lamond AI, (2017) "Characterisation of the biflavonoid hinokiflavone as a pre-mRNA splicing modulator that inhibits SENP." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28884683 28884683]; doi: [https://dx.doi.org/10.7554/eLife.27402 10.7554/eLife.27402]; GPMDB: [http://gpmdb.org/data/keyword/28884683 6]. | ||
+ | #Kishazi E, Dor M, Eperon S, Oberic A, Hamedani M, Turck N, (2017) "Thyroid-associated orbitopathy and tears: A proteomics study." <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28887209 28887209]; doi: [https://dx.doi.org/10.1016/j.jprot.2017.09.001 10.1016/j.jprot.2017.09.001]; GPMDB: [http://gpmdb.org/data/keyword/28887209 8]. | ||
+ | #Rijkers M, van den Eshof BL, van der Meer PF, van Alphen FPJ, de Korte D, Leebeek FWG, Meijer AB, Voorberg J, Jansen AJG, (2017) "Monitoring storage induced changes in the platelet proteome employing label free quantitative mass spectrometry." <i>Sci Rep</i> <b>7</b>(1):11045; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28887518 28887518]; doi: [https://dx.doi.org/10.1038/s41598-017-11643-w 10.1038/s41598-017-11643-w]; GPMDB: [http://gpmdb.org/data/keyword/28887518 21]. | ||
+ | #Bachofner M, Speicher T, Bogorad RL, Muzumdar S, Derrer CP, Hürlimann F, Böhm F, Nanni P, Kockmann T, Kachaylo E, Meyer M, Padrissa-Altés S, Graf R, Anderson DG, Koteliansky V, Auf dem Keller U, Werner S, (2017) "Large-Scale Quantitative Proteomics Identifies the Ubiquitin Ligase Nedd4-1 as an Essential Regulator of Liver Regeneration." <i>Dev Cell</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28890072 28890072]; doi: [https://dx.doi.org/10.1016/j.devcel.2017.07.025 10.1016/j.devcel.2017.07.025]; GPMDB: [http://gpmdb.org/data/keyword/28890072 20]. | ||
+ | #Lapek JD Jr, Greninger P, Morris R, Amzallag A, Pruteanu-Malinici I, Benes CH, Haas W, (2017) "Detection of dysregulated protein-association networks by high-throughput proteomics predicts cancer vulnerabilities." <i>Nat Biotechnol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28892078 28892078]; doi: [https://dx.doi.org/10.1038/nbt.3955 10.1038/nbt.3955]; GPMDB: [http://gpmdb.org/data/keyword/28892078 11]. | ||
+ | #Guccione EJ, Kendall JJ, Hitchcock A, Garg N, White MA, Mulholland F, Poole RK, Kelly DJ, (2017) "Transcriptome and proteome dynamics in chemostat culture reveal how Campylobacter jejuni modulates metabolism, stress responses and virulence factors upon changes in oxygen availability." <i>Environ Microbiol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28892295 28892295]; doi: [https://dx.doi.org/10.1111/1462-2920.13930 10.1111/1462-2920.13930]; GPMDB: [http://gpmdb.org/data/keyword/28892295 54]. | ||
+ | #Bardot P, Vincent SD, Fournier M, Hubaud A, Joint M, Tora L, Pourquié O, (2017) "The TAF10-containing TFIID and SAGA transcriptional complexes are dispensable for early somitogenesis in the mouse embryo." <i>Development</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28893950 28893950]; doi: [https://dx.doi.org/10.1242/dev.146902 10.1242/dev.146902]; GPMDB: [http://gpmdb.org/data/keyword/28893950 30]. | ||
+ | #Avenarius MR, Krey JF, Dumont RA, Morgan CP, Benson CB, Vijayakumar S, Cunningham CL, Scheffer DI, Corey DP, Müller U, Jones SM, Barr-Gillespie PG, (2017) "Heterodimeric capping protein is required for stereocilia length and width regulation." <i>J Cell Biol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28899994 28899994]; doi: [https://dx.doi.org/10.1083/jcb.201704171 10.1083/jcb.201704171]; GPMDB: [http://gpmdb.org/data/keyword/28899994 52]. | ||
+ | #Rowland EA, Greco TM, Snowden CK, McCabe AL, Silhavy TJ, Cristea IM, (2017) "Sirtuin Lipoamidase Activity Is Conserved in Bacteria as a Regulator of Metabolic Enzyme Complexes." <i>MBio</i> <b>8</b>(5):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28900027 28900027]; doi: [https://dx.doi.org/10.1128/mBio.01096-17 10.1128/mBio.01096-17]; GPMDB: [http://gpmdb.org/data/keyword/28900027 2]. | ||
+ | #Hospital MA, Jacquel A, Mazed F, Saland E, Larrue C, Mondesir J, Birsen R, Green AS, Lambert M, Sujobert P, Gautier EF, Salnot V, Le Gall M, Decroocq J, Poulain L, Jacque N, Fontenay M, Kosmider O, Récher C, Auberger P, Mayeux P, Bouscary D, Sarry JE, Tamburini J, (2017) "RSK2 is a new Pim2 target with pro-survival functions in FLT3-ITD-positive acute myeloid leukemia." <i>Leukemia</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28914261 28914261]; doi: [https://dx.doi.org/10.1038/leu.2017.284 10.1038/leu.2017.284]; GPMDB: [http://gpmdb.org/data/keyword/28914261 17]. | ||
+ | #Tain LS, Sehlke R, Jain C, Chokkalingam M, Nagaraj N, Essers P, Rassner M, Grönke S, Froelich J, Dieterich C, Mann M, Alic N, Beyer A, Partridge L, (2017) "A proteomic atlas of insulin signalling reveals tissue-specific mechanisms of longevity assurance." <i>Mol Syst Biol</i> <b>13</b>(9):939; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28916541 28916541]; GPMDB: [http://gpmdb.org/data/keyword/28916541 92]. | ||
+ | #Martin-Perez M, Villén J, (2017) "Determinants and Regulation of Protein Turnover in Yeast." <i>Cell Syst</i> <b>5</b>(3):283–294.e5; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28918244 28918244]; doi: [https://dx.doi.org/10.1016/j.cels.2017.08.008 10.1016/j.cels.2017.08.008]; GPMDB: [http://gpmdb.org/data/keyword/28918244 12]. | ||
+ | #Weber A, Elliott PR, Pinto-Fernandez A, Bonham S, Kessler BM, Komander D, El Oualid F, Krappmann D, (2017) "A Linear Diubiquitin-Based Probe for Efficient and Selective Detection of the Deubiquitinating Enzyme OTULIN." <i>Cell Chem Biol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28919039 28919039]; doi: [https://dx.doi.org/10.1016/j.chembiol.2017.08.006 10.1016/j.chembiol.2017.08.006]; GPMDB: [http://gpmdb.org/data/keyword/28919039 16]. | ||
+ | #Kuboniwa M, Houser JR, Hendrickson EL, Wang Q, Alghamdi SA, Sakanaka A, Miller DP, Hutcherson JA, Wang T, Beck DAC, Whiteley M, Amano A, Wang H, Marcotte EM, Hackett M, Lamont RJ, (2017) "Metabolic crosstalk regulates Porphyromonas gingivalis colonization and virulence during oral polymicrobial infection." <i>Nat Microbiol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28924191 28924191]; doi: [https://dx.doi.org/10.1038/s41564-017-0021-6 10.1038/s41564-017-0021-6]; GPMDB: [http://gpmdb.org/data/keyword/28924191 15]. | ||
+ | #Lum KM, Sato Y, Beyer BA, Plaisted WC, Anglin JL, Lairson LL, Cravatt BF, (2017) "Mapping Protein Targets of Bioactive Small Molecules Using Lipid-Based Chemical Proteomics." <i>ACS Chem Biol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28930429 28930429]; doi: [https://dx.doi.org/10.1021/acschembio.7b00581 10.1021/acschembio.7b00581]; GPMDB: [http://gpmdb.org/data/keyword/28930429 43]. | ||
+ | #Whiteley AM, Prado MA, Peng I, Abbas AR, Haley B, Paulo JA, Reichelt M, Katakam A, Sagolla M, Modrusan Z, Lee DY, Roose-Girma M, Kirkpatrick DS, McKenzie BS, Gygi SP, Finley D, Brown EJ, (2017) "Ubiquilin1 promotes antigen-receptor mediated proliferation by eliminating mislocalized mitochondrial proteins." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28933694 28933694]; doi: [https://dx.doi.org/10.7554/eLife.26435 10.7554/eLife.26435]; GPMDB: [http://gpmdb.org/data/keyword/28933694 4]. | ||
+ | #Velásquez E, Nogueira FCS, Velásquez I, Schmitt A, Falkai P, Domont GB, Martins de Souza D, (2017) "Synaptosomal proteome of the orbitofrontal cortex from schizophrenia patients using quantitative label-free and iTRAQ-based shotgun proteomics." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28949146 28949146]; doi: [https://dx.doi.org/10.1021/acs.jproteome.7b00422 10.1021/acs.jproteome.7b00422]; GPMDB: [http://gpmdb.org/data/keyword/28949146 3]. | ||
+ | #Cuijpers SAG, Willemstein E, Vertegaal ACO, (2017) "<b>Converging SUMO and ubiquitin signaling: improved methodology identifies co-modified target proteins</b>." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28951443 28951443]; doi: [https://dx.doi.org/10.1074/mcp.TIR117.000152 10.1074/mcp.TIR117.000152]; GPMDB: [http://gpmdb.org/data/keyword/28951443 102]. | ||
+ | #Seddigh P, Bracht T, Molinier-Frenkel V, Castellano F, Kniemeyer O, Schuster M, Weski J, Hasenberg A, Kraus A, Poschet G, Hager T, Theegarte D, Opitz C, Brakhage AA, Sitek B, Hasenberg M, Gunzer M, (2017) "Quantitative Analysis of Proteome Modulations in Alveolar Epithelial Type II Cells in Response to Pulmonary <i>Aspergillus fumigatus</i> Infection." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28951444 28951444]; doi: [https://dx.doi.org/10.1074/mcp.RA117.000072 10.1074/mcp.RA117.000072]; GPMDB: [http://gpmdb.org/data/keyword/28951444 18]. | ||
+ | #Wang Q, Lu Q, (2017) "Plasma membrane-derived extracellular microvesicles mediate non-canonical intercellular NOTCH signaling." <i>Nat Commun</i> <b>8</b>(1):709; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28955033 28955033]; doi: [https://dx.doi.org/10.1038/s41467-017-00767-2 10.1038/s41467-017-00767-2]; GPMDB: [http://gpmdb.org/data/keyword/28955033 2]. | ||
+ | #Triana S, de Cock H, Ohm RA, Danies G, Wösten HAB, Restrepo S, González Barrios AF, Celis A, (2017) "Lipid Metabolic Versatility in <i>Malassezia</i> spp. Yeasts Studied through Metabolic Modeling." <i>Front Microbiol</i> <b>8</b>:1772; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28959251 28959251]; doi: [https://dx.doi.org/10.3389/fmicb.2017.01772 10.3389/fmicb.2017.01772]; GPMDB: [http://gpmdb.org/data/keyword/28959251 37]. | ||
+ | #Wang Y, Chen Y, Zhang Y, Wei W, Li Y, Zhang T, He F, Gao Y, Xu P, (2017) "Multi-Protease Strategy Identifies Three PE2 Missing Proteins in Human Testis Tissue." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28959888 28959888]; doi: [https://dx.doi.org/10.1021/acs.jproteome.7b00340 10.1021/acs.jproteome.7b00340]; GPMDB: [http://gpmdb.org/data/keyword/28959888 63]. | ||
+ | #Stadlmann J, Taubenschmid J, Wenzel D, Gattinger A, Dürnberger G, Dusberger F, Elling U, Mach L, Mechtler K, Penninger JM, (2017) "Comparative glycoproteomics of stem cells identifies new players in ricin toxicity." <i>Nature</i> <b>549</b>(7673):538–542; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28959962 28959962]; doi: [https://dx.doi.org/10.1038/nature24015 10.1038/nature24015]; GPMDB: [http://gpmdb.org/data/keyword/28959962 1]. | ||
+ | #Li S, He Y, Lin Z, Xu S, Zhou R, Liang F, Wang J, Yang H, Liu S, Ren Y, (2017) "Digging more missing proteins using an enrichment approach with ProteoMiner™." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28960076 28960076]; doi: [https://dx.doi.org/10.1021/acs.jproteome.7b00353 10.1021/acs.jproteome.7b00353]; GPMDB: [http://gpmdb.org/data/keyword/28960076 199]. | ||
+ | #Hauser DN, Mamais A, Conti MM, Primiani CT, Kumaran R, Dillman AA, Langston RG, Beilina A, Garcia JH, Diaz-Ruiz A, Bernier M, Fiesel FC, Hou X, Springer W, Li Y, de Cabo R, Cookson MR, (2017) "Hexokinases link DJ-1 to the PINK1/parkin pathway." <i>Mol Neurodegener</i> <b>12</b>(1):70; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28962651 28962651]; doi: [https://dx.doi.org/10.1186/s13024-017-0212-x 10.1186/s13024-017-0212-x]; GPMDB: [http://gpmdb.org/data/keyword/28962651 6]. | ||
+ | #Zhang W, Chen X, Yan Z, Chen Y, Cui Y, Chen B, Huang C, Zhang W, Yin X, He QY, He F, Wang T, (2017) "Detergent-insoluble proteome analysis revealed aberrantly aggregated proteins in human preeclampsia placentas." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28965414 28965414]; doi: [https://dx.doi.org/10.1021/acs.jproteome.7b00352 10.1021/acs.jproteome.7b00352]; GPMDB: [http://gpmdb.org/data/keyword/28965414 4]. | ||
+ | #Reyes ED, Kulej K, Pancholi NJ, Akhtar LN, Avgousti DC, Kim ET, Bricker DK, Spruce LA, Koniski SA, Seeholzer SH, Isaacs SN, Garcia BA, Weitzman MD, (2017) "Identifying host factors associated with DNA replicated during virus infection." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28972080 28972080]; doi: [https://dx.doi.org/10.1074/mcp.M117.067116 10.1074/mcp.M117.067116]; GPMDB: [http://gpmdb.org/data/keyword/28972080 164]. | ||
+ | #Kollipara L, Buchkremer S, Coraspe JAG, Hathazi D, Senderek J, Weis J, Zahedi RP, Roos A, (2017) "In-depth phenotyping of lymphoblastoid cells suggests selective cellular vulnerability in Marinesco-Sjögren syndrome." <i>Oncotarget</i> <b>8</b>(40):68493–68516; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28978133 28978133]; doi: [https://dx.doi.org/10.18632/oncotarget.19663 10.18632/oncotarget.19663]; GPMDB: [http://gpmdb.org/data/keyword/28978133 23]. | ||
+ | #Opitz N, Schmitt K, Hofer-Pretz V, Neumann B, Krebber H, Braus GH, Valerius O, (2017) "Capturing the Asc1p/RACK1 microenvironment at the head region of the 40S ribosome with quantitative BioID in yeast." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28982715 28982715]; doi: [https://dx.doi.org/10.1074/mcp.M116.066654 10.1074/mcp.M116.066654]; GPMDB: [http://gpmdb.org/data/keyword/28982715 268]. | ||
+ | #Saravanan R, Adav SS, Choong YK, van der Plas MJA, Petrlova J, Kjellström S, Sze SK, Schmidtchen A, (2017) "Proteolytic signatures define unique thrombin-derived peptides present in human wound fluid in vivo." <i>Sci Rep</i> <b>7</b>(1):13136; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29030565 29030565]; doi: [https://dx.doi.org/10.1038/s41598-017-13197-3 10.1038/s41598-017-13197-3]; GPMDB: [http://gpmdb.org/data/keyword/29030565 43]. | ||
+ | #Grenga L, Chandra G, Saalbach G, Galmozzi CV, Kramer G, Malone JG, (2017) "Analyzing the Complex Regulatory Landscape of Hfq - an Integrative, Multi-Omics Approach." <i>Front Microbiol</i> <b>8</b>:1784; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29033902 29033902]; doi: [https://dx.doi.org/10.3389/fmicb.2017.01784 10.3389/fmicb.2017.01784]; GPMDB: [http://gpmdb.org/data/keyword/29033902 1]. | ||
+ | #Kugeratski FG, Batista M, Lima CVP, Neilson LJ, da Cunha ES, de Godoy LMF, Zanivan S, Krieger MA, Marchini FK, (2017) "The mitogen-activated protein kinase kinase 5 regulates the proliferation and biosynthetic processes in procyclic forms of Trypanosoma brucei." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29043805 29043805]; doi: [https://dx.doi.org/10.1021/acs.jproteome.7b00415 10.1021/acs.jproteome.7b00415]; GPMDB: [http://gpmdb.org/data/keyword/29043805 15]. | ||
+ | #Fabrik I, Link M, Putzova D, Plzakova L, Lubovska Z, Philimonenko V, Pavkova I, Rehulka P, Krocova Z, Hozak P, Santic M, Stulik J, (2017) "<b>The early dendritic cell signaling induced by virulent <i>Francisella</i><i>tularensis</i> strain occurs in phases and involves the activation of ERKs and p38 in the later stage.</b>" <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29046388 29046388]; doi: [https://dx.doi.org/10.1074/mcp.RA117.000160 10.1074/mcp.RA117.000160]; GPMDB: [http://gpmdb.org/data/keyword/29046388 358]. | ||
+ | #Raschdorf O, Bonn F, Zeytuni N, Zarivach R, Becher D, Schüler D, (2017) "A quantitative assessment of the membrane-integral sub-proteome of a bacterial magnetic organelle." <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29054541 29054541]; doi: [https://dx.doi.org/10.1016/j.jprot.2017.10.007 10.1016/j.jprot.2017.10.007]; GPMDB: [http://gpmdb.org/data/keyword/29054541 127]. | ||
+ | #Karg E, Smets M, Ryan J, Forné I, Qin W, Mulholland CB, Kalideris G, Imhof A, Bultmann S, Leonhardt H, (2017) "Ubiquitome analysis reveals PCNA-associated factor 15 (PAF15) as a specific ubiquitination target of UHRF1 in embryonic stem cells." <i>J Mol Biol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29055779 29055779]; doi: [https://dx.doi.org/10.1016/j.jmb.2017.10.014 10.1016/j.jmb.2017.10.014]; GPMDB: [http://gpmdb.org/data/keyword/29055779 32]. | ||
+ | #Hartl M, Füßl M, Boersema PJ, Jost JO, Kramer K, Bakirbas A, Sindlinger J, Plöchinger M, Leister D, Uhrig G, Moorhead GB, Cox J, Salvucci ME, Schwarzer D, Mann M, Finkemeier I, (2017) "Lysine acetylome profiling uncovers novel histone deacetylase substrate proteins in <i>Arabidopsis</i>." <i>Mol Syst Biol</i> <b>13</b>(10):949; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29061669 29061669]; GPMDB: [http://gpmdb.org/data/keyword/29061669 44]. |
GPMDB was originally constructed to serve as a reference work for all publicly available proteomics generated using tandem mass spectrometry. Public data is downloaded and reanalyzed using the current version of X! Tandem. The result files generated by the reanalysis and the relevant metadata are imported into the database and made available through the associated web site, ftp site and REST interfaces.
Contents |
The following public data repositories are checked daily for new suitable raw data for reanalysis:
Data made available from specific large projects, such as CPTAC or the Human Proteome Atlas, are also included when they are made available. Every effort is made so that reanalyzed results from all data sources are made available within 48 hours of their being released. In addition, data from lab web sites, ftp sites and direct contributions through the GPM sites made available to researchers are imported into GPMDB as part of a daily incremental update process.
GPMDB has been in operation since Jan. 1, 2004. Several large data source repositories have come into existence and ceased activity in the period since that time. All of the data from those repositories (e.g., TRANCHE, Peptidome) were reanalyzed and stored in GPMDB and they are still available even though the source repository sites are no longer active.
Simply because data is made available does not mean that it will be included in GPMDB. The data must be approved our quality control AI for its initial acceptance and it may be rejected subsequently because of either quality or originality concerns.
The following is a list of data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list was current, as of Nov. 5, 2017.