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==Review process== | ==Review process== | ||
- | Simply because data is made available does not mean that it will be included in GPMDB. The data must | + | Simply because data is made available does not mean that it will be included in GPMDB. The data must be approved our quality control AI for its initial acceptance and it may be rejected subsequently because of either quality or originality concerns. |
+ | |||
+ | <b>CAUTION</b>: Many papers contain serious errors in their Methods sections. When using data from the literature, it is important to be skeptical of any experimental parameter (cell line, tissue type, modification reagents, quantitation methoods, etc.) that may impact on your use of the data. We have tried to correct any obvious errors, but there is no way to guarantee that we found them all. When attempting to analyze or reproduce results, keep in mind the likelyhood that even key parts of the experiment methods may have been recorded incorrectly in the associated manuscript, as methods are rarely reviewed properly in the current journal publication process. | ||
==Data from publications== | ==Data from publications== | ||
- | The following is a list of data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list was current, as of | + | The following is a list of data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list was current, as of Jan. 22, 2018. |
#Lipton MS, Pasa-Tolic' L, Anderson GA, Anderson DJ, Auberry DL, Battista JR, Daly MJ, Fredrickson J, Hixson KK, Kostandarithes H, Masselon C, Markillie LM, Moore RJ, Romine MF, Shen Y, Stritmatter E, Tolic' N, Udseth HR, Venkateswaran A, Wong KK, Zhao R, Smith RD, (2002) "Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags." <i>Proc Natl Acad Sci U S A</i> <b>99</b>(17):11049–54; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/12177431 12177431]; doi: [https://dx.doi.org/10.1073/pnas.172170199 10.1073/pnas.172170199]; GPMDB: [http://gpmdb.org/data/keyword/12177431 498]. | #Lipton MS, Pasa-Tolic' L, Anderson GA, Anderson DJ, Auberry DL, Battista JR, Daly MJ, Fredrickson J, Hixson KK, Kostandarithes H, Masselon C, Markillie LM, Moore RJ, Romine MF, Shen Y, Stritmatter E, Tolic' N, Udseth HR, Venkateswaran A, Wong KK, Zhao R, Smith RD, (2002) "Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags." <i>Proc Natl Acad Sci U S A</i> <b>99</b>(17):11049–54; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/12177431 12177431]; doi: [https://dx.doi.org/10.1073/pnas.172170199 10.1073/pnas.172170199]; GPMDB: [http://gpmdb.org/data/keyword/12177431 498]. | ||
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#Sprung RW Jr, Brock JW, Tanksley JP, Li M, Washington MK, Slebos RJ, Liebler DC, (2009) "Equivalence of protein inventories obtained from formalin-fixed paraffin-embedded and frozen tissue in multidimensional liquid chromatography-tandem mass spectrometry shotgun proteomic analysis." <i>Mol Cell Proteomics</i> <b>8</b>(8):1988–98; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19467989 19467989]; doi: [https://dx.doi.org/10.1074/mcp.M800518-MCP200 10.1074/mcp.M800518-MCP200]; GPMDB: [http://gpmdb.org/data/keyword/19467989 230]. | #Sprung RW Jr, Brock JW, Tanksley JP, Li M, Washington MK, Slebos RJ, Liebler DC, (2009) "Equivalence of protein inventories obtained from formalin-fixed paraffin-embedded and frozen tissue in multidimensional liquid chromatography-tandem mass spectrometry shotgun proteomic analysis." <i>Mol Cell Proteomics</i> <b>8</b>(8):1988–98; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19467989 19467989]; doi: [https://dx.doi.org/10.1074/mcp.M800518-MCP200 10.1074/mcp.M800518-MCP200]; GPMDB: [http://gpmdb.org/data/keyword/19467989 230]. | ||
#Burkard ME, Maciejowski J, Rodriguez-Bravo V, Repka M, Lowery DM, Clauser KR, Zhang C, Shokat KM, Carr SA, Yaffe MB, Jallepalli PV, (2009) "Plk1 self-organization and priming phosphorylation of HsCYK-4 at the spindle midzone regulate the onset of division in human cells." <i>PLoS Biol</i> <b>7</b>(5):e1000111; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19468302 19468302]; doi: [https://dx.doi.org/10.1371/journal.pbio.1000111 10.1371/journal.pbio.1000111]; GPMDB: [http://gpmdb.org/data/keyword/19468302 1]. | #Burkard ME, Maciejowski J, Rodriguez-Bravo V, Repka M, Lowery DM, Clauser KR, Zhang C, Shokat KM, Carr SA, Yaffe MB, Jallepalli PV, (2009) "Plk1 self-organization and priming phosphorylation of HsCYK-4 at the spindle midzone regulate the onset of division in human cells." <i>PLoS Biol</i> <b>7</b>(5):e1000111; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19468302 19468302]; doi: [https://dx.doi.org/10.1371/journal.pbio.1000111 10.1371/journal.pbio.1000111]; GPMDB: [http://gpmdb.org/data/keyword/19468302 1]. | ||
- | # () "" <i></i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/ ]; GPMDB: [http://gpmdb.org/data/keyword/ | + | #Samaee SM, Lahnsteiner F, Giménez G, Estévez A, Sarg B, Lindner H, (2009) "Quantitative composition of vitellogenin-derived yolk proteins and their effects on viability of embryos and larvae of common dentex (Dentex dentex), a marine pelagophil teleost." <i>J Exp Zool A Ecol Genet Physiol</i> <b>311</b>(7):504–20; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19492308 19492308]; doi: [https://dx.doi.org/10.1002/jez.548 10.1002/jez.548]; GPMDB: [http://gpmdb.org/data/keyword/19492308 4]. |
#Ma ZQ, Dasari S, Chambers MC, Litton MD, Sobecki SM, Zimmerman LJ, Halvey PJ, Schilling B, Drake PM, Gibson BW, Tabb DL, (2009) "IDPicker 2.0: Improved protein assembly with high discrimination peptide identification filtering." <i>J Proteome Res</i> <b>8</b>(8):3872–81; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19522537 19522537]; doi: [https://dx.doi.org/10.1021/pr900360j 10.1021/pr900360j]; GPMDB: [http://gpmdb.org/data/keyword/19522537 18]. | #Ma ZQ, Dasari S, Chambers MC, Litton MD, Sobecki SM, Zimmerman LJ, Halvey PJ, Schilling B, Drake PM, Gibson BW, Tabb DL, (2009) "IDPicker 2.0: Improved protein assembly with high discrimination peptide identification filtering." <i>J Proteome Res</i> <b>8</b>(8):3872–81; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19522537 19522537]; doi: [https://dx.doi.org/10.1021/pr900360j 10.1021/pr900360j]; GPMDB: [http://gpmdb.org/data/keyword/19522537 18]. | ||
#Shi L, Chowdhury SM, Smallwood HS, Yoon H, Mottaz-Brewer HM, Norbeck AD, McDermott JE, Clauss TR, Heffron F, Smith RD, Adkins JN, (2009) "Proteomic investigation of the time course responses of RAW 264.7 macrophages to infection with Salmonella enterica." <i>Infect Immun</i> <b>77</b>(8):3227–33; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19528222 19528222]; doi: [https://dx.doi.org/10.1128/IAI.00063-09 10.1128/IAI.00063-09]; GPMDB: [http://gpmdb.org/data/keyword/19528222 29]. | #Shi L, Chowdhury SM, Smallwood HS, Yoon H, Mottaz-Brewer HM, Norbeck AD, McDermott JE, Clauss TR, Heffron F, Smith RD, Adkins JN, (2009) "Proteomic investigation of the time course responses of RAW 264.7 macrophages to infection with Salmonella enterica." <i>Infect Immun</i> <b>77</b>(8):3227–33; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19528222 19528222]; doi: [https://dx.doi.org/10.1128/IAI.00063-09 10.1128/IAI.00063-09]; GPMDB: [http://gpmdb.org/data/keyword/19528222 29]. | ||
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#Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villén J, Haas W, Sowa ME, Gygi SP, (2010) "A tissue-specific atlas of mouse protein phosphorylation and expression." <i>Cell</i> <b>143</b>(7):1174–89; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21183079 21183079]; doi: [https://dx.doi.org/10.1016/j.cell.2010.12.001 10.1016/j.cell.2010.12.001]; GPMDB: [http://gpmdb.org/data/keyword/21183079 313]. | #Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villén J, Haas W, Sowa ME, Gygi SP, (2010) "A tissue-specific atlas of mouse protein phosphorylation and expression." <i>Cell</i> <b>143</b>(7):1174–89; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21183079 21183079]; doi: [https://dx.doi.org/10.1016/j.cell.2010.12.001 10.1016/j.cell.2010.12.001]; GPMDB: [http://gpmdb.org/data/keyword/21183079 313]. | ||
#Brockmeyer C, Paster W, Pepper D, Tan CP, Trudgian DC, McGowan S, Fu G, Gascoigne NR, Acuto O, Salek M, (2011) "T cell receptor (TCR)-induced tyrosine phosphorylation dynamics identifies THEMIS as a new TCR signalosome component." <i>J Biol Chem</i> <b>286</b>(9):7535–47; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21189249 21189249]; doi: [https://dx.doi.org/10.1074/jbc.M110.201236 10.1074/jbc.M110.201236]; GPMDB: [http://gpmdb.org/data/keyword/21189249 4]. | #Brockmeyer C, Paster W, Pepper D, Tan CP, Trudgian DC, McGowan S, Fu G, Gascoigne NR, Acuto O, Salek M, (2011) "T cell receptor (TCR)-induced tyrosine phosphorylation dynamics identifies THEMIS as a new TCR signalosome component." <i>J Biol Chem</i> <b>286</b>(9):7535–47; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21189249 21189249]; doi: [https://dx.doi.org/10.1074/jbc.M110.201236 10.1074/jbc.M110.201236]; GPMDB: [http://gpmdb.org/data/keyword/21189249 4]. | ||
- | #Manes NP, Dong L, Zhou W, Du X, Reghu N, Kool AC, Choi D, Bailey CL, Petricoin EF 3rd, Liotta LA, Popov SG, (2011) "Discovery of mouse spleen signaling responses to anthrax using label-free quantitative phosphoproteomics via mass spectrometry." <i>Mol Cell Proteomics</i> <b>10</b>(3):M110.000927; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21189417 21189417]; doi: [https://dx.doi.org/10.1074/mcp.M110.000927 10.1074/mcp.M110.000927]; GPMDB: [http://gpmdb.org/data/keyword/21189417 | + | #Manes NP, Dong L, Zhou W, Du X, Reghu N, Kool AC, Choi D, Bailey CL, Petricoin EF 3rd, Liotta LA, Popov SG, (2011) "Discovery of mouse spleen signaling responses to anthrax using label-free quantitative phosphoproteomics via mass spectrometry." <i>Mol Cell Proteomics</i> <b>10</b>(3):M110.000927; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21189417 21189417]; doi: [https://dx.doi.org/10.1074/mcp.M110.000927 10.1074/mcp.M110.000927]; GPMDB: [http://gpmdb.org/data/keyword/21189417 133]. |
#Hansson J, Panchaud A, Favre L, Bosco N, Mansourian R, Benyacoub J, Blum S, Jensen ON, Kussmann M, (2011) "Time-resolved quantitative proteome analysis of in vivo intestinal development." <i>Mol Cell Proteomics</i> <b>10</b>(3):M110.005231; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21191033 21191033]; doi: [https://dx.doi.org/10.1074/mcp.M110.005231 10.1074/mcp.M110.005231]; GPMDB: [http://gpmdb.org/data/keyword/21191033 48]. | #Hansson J, Panchaud A, Favre L, Bosco N, Mansourian R, Benyacoub J, Blum S, Jensen ON, Kussmann M, (2011) "Time-resolved quantitative proteome analysis of in vivo intestinal development." <i>Mol Cell Proteomics</i> <b>10</b>(3):M110.005231; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21191033 21191033]; doi: [https://dx.doi.org/10.1074/mcp.M110.005231 10.1074/mcp.M110.005231]; GPMDB: [http://gpmdb.org/data/keyword/21191033 48]. | ||
#Singh SK, Lakshmi MG, Saxena S, Swamy CV, Idris MM, (2011) "Proteome profile of zebrafish caudal fin based on one-dimensional gel electrophoresis LCMS/MS and two-dimensional gel electrophoresis MALDI MS/MS analysis." <i>J Sep Sci</i> <b>34</b>(2):225–32; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21246729 21246729]; doi: [https://dx.doi.org/10.1002/jssc.201000626 10.1002/jssc.201000626]; GPMDB: [http://gpmdb.org/data/keyword/21246729 17]. | #Singh SK, Lakshmi MG, Saxena S, Swamy CV, Idris MM, (2011) "Proteome profile of zebrafish caudal fin based on one-dimensional gel electrophoresis LCMS/MS and two-dimensional gel electrophoresis MALDI MS/MS analysis." <i>J Sep Sci</i> <b>34</b>(2):225–32; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21246729 21246729]; doi: [https://dx.doi.org/10.1002/jssc.201000626 10.1002/jssc.201000626]; GPMDB: [http://gpmdb.org/data/keyword/21246729 17]. | ||
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#Nishtala K, Phong TQ, Steil L, Sauter M, Salazar MG, Kandolf R, Kroemer HK, Felix SB, Völker U, Klingel K, Hammer E, (2011) "Virus-induced dilated cardiomyopathy is characterized by increased levels of fibrotic extracellular matrix proteins and reduced amounts of energy-producing enzymes." <i>Proteomics</i> <b>11</b>(22):4310–20; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21954127 21954127]; doi: [https://dx.doi.org/10.1002/pmic.201100229 10.1002/pmic.201100229]; GPMDB: [http://gpmdb.org/data/keyword/21954127 91]. | #Nishtala K, Phong TQ, Steil L, Sauter M, Salazar MG, Kandolf R, Kroemer HK, Felix SB, Völker U, Klingel K, Hammer E, (2011) "Virus-induced dilated cardiomyopathy is characterized by increased levels of fibrotic extracellular matrix proteins and reduced amounts of energy-producing enzymes." <i>Proteomics</i> <b>11</b>(22):4310–20; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21954127 21954127]; doi: [https://dx.doi.org/10.1002/pmic.201100229 10.1002/pmic.201100229]; GPMDB: [http://gpmdb.org/data/keyword/21954127 91]. | ||
#Zeiler M, Straube WL, Lundberg E, Uhlen M, Mann M, (2012) "A Protein Epitope Signature Tag (PrEST) library allows SILAC-based absolute quantification and multiplexed determination of protein copy numbers in cell lines." <i>Mol Cell Proteomics</i> <b>11</b>(3):O111.009613; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21964433 21964433]; doi: [https://dx.doi.org/10.1074/mcp.O111.009613 10.1074/mcp.O111.009613]; GPMDB: [http://gpmdb.org/data/keyword/21964433 138]. | #Zeiler M, Straube WL, Lundberg E, Uhlen M, Mann M, (2012) "A Protein Epitope Signature Tag (PrEST) library allows SILAC-based absolute quantification and multiplexed determination of protein copy numbers in cell lines." <i>Mol Cell Proteomics</i> <b>11</b>(3):O111.009613; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21964433 21964433]; doi: [https://dx.doi.org/10.1074/mcp.O111.009613 10.1074/mcp.O111.009613]; GPMDB: [http://gpmdb.org/data/keyword/21964433 138]. | ||
- | # () "" <i></i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/ ]; GPMDB: [http://gpmdb.org/data/keyword/ | + | #Kelkar DS, Kumar D, Kumar P, Balakrishnan L, Muthusamy B, Yadav AK, Shrivastava P, Marimuthu A, Anand S, Sundaram H, Kingsbury R, Harsha HC, Nair B, Prasad TS, Chauhan DS, Katoch K, Katoch VM, Kumar P, Chaerkady R, Ramachandran S, Dash D, Pandey A, (2011) "Proteogenomic analysis of Mycobacterium tuberculosis by high resolution mass spectrometry." <i>Mol Cell Proteomics</i> <b>10</b>(12):M111.011627; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21969609 21969609]; doi: [https://dx.doi.org/10.1074/mcp.M111.011445 10.1074/mcp.M111.011445]; GPMDB: [http://gpmdb.org/data/keyword/21969609 52]. |
#Burgener A, Rahman S, Ahmad R, Lajoie J, Ramdahin S, Mesa C, Brunet S, Wachihi C, Kimani J, Fowke K, Carr S, Plummer F, Ball TB, (2011) "Comprehensive proteomic study identifies serpin and cystatin antiproteases as novel correlates of HIV-1 resistance in the cervicovaginal mucosa of female sex workers." <i>J Proteome Res</i> <b>10</b>(11):5139–49; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21973077 21973077]; doi: [https://dx.doi.org/10.1021/pr200596r 10.1021/pr200596r]; GPMDB: [http://gpmdb.org/data/keyword/21973077 6]. | #Burgener A, Rahman S, Ahmad R, Lajoie J, Ramdahin S, Mesa C, Brunet S, Wachihi C, Kimani J, Fowke K, Carr S, Plummer F, Ball TB, (2011) "Comprehensive proteomic study identifies serpin and cystatin antiproteases as novel correlates of HIV-1 resistance in the cervicovaginal mucosa of female sex workers." <i>J Proteome Res</i> <b>10</b>(11):5139–49; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21973077 21973077]; doi: [https://dx.doi.org/10.1021/pr200596r 10.1021/pr200596r]; GPMDB: [http://gpmdb.org/data/keyword/21973077 6]. | ||
#Phanstiel DH, Brumbaugh J, Wenger CD, Tian S, Probasco MD, Bailey DJ, Swaney DL, Tervo MA, Bolin JM, Ruotti V, Stewart R, Thomson JA, Coon JJ, (2011) "Proteomic and phosphoproteomic comparison of human ES and iPS cells." <i>Nat Methods</i> <b>8</b>(10):821–7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21983960 21983960]; doi: [https://dx.doi.org/10.1038/nmeth.1699 10.1038/nmeth.1699]; GPMDB: [http://gpmdb.org/data/keyword/21983960 88]. | #Phanstiel DH, Brumbaugh J, Wenger CD, Tian S, Probasco MD, Bailey DJ, Swaney DL, Tervo MA, Bolin JM, Ruotti V, Stewart R, Thomson JA, Coon JJ, (2011) "Proteomic and phosphoproteomic comparison of human ES and iPS cells." <i>Nat Methods</i> <b>8</b>(10):821–7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21983960 21983960]; doi: [https://dx.doi.org/10.1038/nmeth.1699 10.1038/nmeth.1699]; GPMDB: [http://gpmdb.org/data/keyword/21983960 88]. | ||
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#Thomae AW, Schade GO, Padeken J, Borath M, Vetter I, Kremmer E, Heun P, Imhof A, (2013) "A pair of centromeric proteins mediates reproductive isolation in Drosophila species." <i>Dev Cell</i> <b>27</b>(4):412–24; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24239514 24239514]; doi: [https://dx.doi.org/10.1016/j.devcel.2013.10.001 10.1016/j.devcel.2013.10.001]; GPMDB: [http://gpmdb.org/data/keyword/24239514 51]. | #Thomae AW, Schade GO, Padeken J, Borath M, Vetter I, Kremmer E, Heun P, Imhof A, (2013) "A pair of centromeric proteins mediates reproductive isolation in Drosophila species." <i>Dev Cell</i> <b>27</b>(4):412–24; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24239514 24239514]; doi: [https://dx.doi.org/10.1016/j.devcel.2013.10.001 10.1016/j.devcel.2013.10.001]; GPMDB: [http://gpmdb.org/data/keyword/24239514 51]. | ||
#Branca RM, Orre LM, Johansson HJ, Granholm V, Huss M, Pérez-Bercoff Å, Forshed J, Käll L, Lehtiö J, (2014) "HiRIEF LC-MS enables deep proteome coverage and unbiased proteogenomics." <i>Nat Methods</i> <b>11</b>(1):59–62; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24240322 24240322]; doi: [https://dx.doi.org/10.1038/nmeth.2732 10.1038/nmeth.2732]; GPMDB: [http://gpmdb.org/data/keyword/24240322 2592]. | #Branca RM, Orre LM, Johansson HJ, Granholm V, Huss M, Pérez-Bercoff Å, Forshed J, Käll L, Lehtiö J, (2014) "HiRIEF LC-MS enables deep proteome coverage and unbiased proteogenomics." <i>Nat Methods</i> <b>11</b>(1):59–62; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24240322 24240322]; doi: [https://dx.doi.org/10.1038/nmeth.2732 10.1038/nmeth.2732]; GPMDB: [http://gpmdb.org/data/keyword/24240322 2592]. | ||
+ | #Schaab C, Oppermann FS, Klammer M, Pfeifer H, Tebbe A, Oellerich T, Krauter J, Levis M, Perl AE, Daub H, Steffen B, Godl K, Serve H, (2014) "Global phosphoproteome analysis of human bone marrow reveals predictive phosphorylation markers for the treatment of acute myeloid leukemia with quizartinib." <i>Leukemia</i> <b>28</b>(3):716–9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24247654 24247654]; doi: [https://dx.doi.org/10.1038/leu.2013.347 10.1038/leu.2013.347]; GPMDB: [http://gpmdb.org/data/keyword/24247654 22]. | ||
#Drake JM, Graham NA, Lee JK, Stoyanova T, Faltermeier CM, Sud S, Titz B, Huang J, Pienta KJ, Graeber TG, Witte ON, (2013) "Metastatic castration-resistant prostate cancer reveals intrapatient similarity and interpatient heterogeneity of therapeutic kinase targets." <i>Proc Natl Acad Sci U S A</i> <b>110</b>(49):E4762–9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24248375 24248375]; doi: [https://dx.doi.org/10.1073/pnas.1319948110 10.1073/pnas.1319948110]; GPMDB: [http://gpmdb.org/data/keyword/24248375 87]. | #Drake JM, Graham NA, Lee JK, Stoyanova T, Faltermeier CM, Sud S, Titz B, Huang J, Pienta KJ, Graeber TG, Witte ON, (2013) "Metastatic castration-resistant prostate cancer reveals intrapatient similarity and interpatient heterogeneity of therapeutic kinase targets." <i>Proc Natl Acad Sci U S A</i> <b>110</b>(49):E4762–9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24248375 24248375]; doi: [https://dx.doi.org/10.1073/pnas.1319948110 10.1073/pnas.1319948110]; GPMDB: [http://gpmdb.org/data/keyword/24248375 87]. | ||
#Chang C, Li L, Zhang C, Wu S, Guo K, Zi J, Chen Z, Jiang J, Ma J, Yu Q, Fan F, Qin P, Han M, Su N, Chen T, Wang K, Zhai L, Zhang T, Ying W, Xu Z, Zhang Y, Liu Y, Liu X, Zhong F, Shen H, Wang Q, Hou G, Zhao H, Li G, Liu S, Gu W, Wang G, Wang T, Zhang G, Qian X, Li N, He QY, Lin L, Yang P, Zhu Y, He F, Xu P, (2014) "Systematic analyses of the transcriptome, translatome, and proteome provide a global view and potential strategy for the C-HPP." <i>J Proteome Res</i> <b>13</b>(1):38–49; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24256510 24256510]; doi: [https://dx.doi.org/10.1021/pr4009018 10.1021/pr4009018]; GPMDB: [http://gpmdb.org/data/keyword/24256510 216]. | #Chang C, Li L, Zhang C, Wu S, Guo K, Zi J, Chen Z, Jiang J, Ma J, Yu Q, Fan F, Qin P, Han M, Su N, Chen T, Wang K, Zhai L, Zhang T, Ying W, Xu Z, Zhang Y, Liu Y, Liu X, Zhong F, Shen H, Wang Q, Hou G, Zhao H, Li G, Liu S, Gu W, Wang G, Wang T, Zhang G, Qian X, Li N, He QY, Lin L, Yang P, Zhu Y, He F, Xu P, (2014) "Systematic analyses of the transcriptome, translatome, and proteome provide a global view and potential strategy for the C-HPP." <i>J Proteome Res</i> <b>13</b>(1):38–49; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24256510 24256510]; doi: [https://dx.doi.org/10.1021/pr4009018 10.1021/pr4009018]; GPMDB: [http://gpmdb.org/data/keyword/24256510 216]. | ||
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#Farrelly LA, Dicker P, Wynne K, English J, Cagney G, Föcking M, Cotter DR, (2014) "Adolescent Risperidone treatment alters protein expression associated with protein trafficking and cellular metabolism in the adult rat prefrontal cortex." <i>Proteomics</i> <b>14</b>(12):1574–8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24733778 24733778]; doi: [https://dx.doi.org/10.1002/pmic.201300466 10.1002/pmic.201300466]; GPMDB: [http://gpmdb.org/data/keyword/24733778 30]. | #Farrelly LA, Dicker P, Wynne K, English J, Cagney G, Föcking M, Cotter DR, (2014) "Adolescent Risperidone treatment alters protein expression associated with protein trafficking and cellular metabolism in the adult rat prefrontal cortex." <i>Proteomics</i> <b>14</b>(12):1574–8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24733778 24733778]; doi: [https://dx.doi.org/10.1002/pmic.201300466 10.1002/pmic.201300466]; GPMDB: [http://gpmdb.org/data/keyword/24733778 30]. | ||
#Tran DT, Adhikari J, Fitzgerald MC, (2014) "StableIsotope Labeling with Amino Acids in Cell Culture (SILAC)-based strategy for proteome-wide thermodynamic analysis of protein-ligand binding interactions." <i>Mol Cell Proteomics</i> <b>13</b>(7):1800–13; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24741112 24741112]; doi: [https://dx.doi.org/10.1074/mcp.M113.034702 10.1074/mcp.M113.034702]; GPMDB: [http://gpmdb.org/data/keyword/24741112 27]. | #Tran DT, Adhikari J, Fitzgerald MC, (2014) "StableIsotope Labeling with Amino Acids in Cell Culture (SILAC)-based strategy for proteome-wide thermodynamic analysis of protein-ligand binding interactions." <i>Mol Cell Proteomics</i> <b>13</b>(7):1800–13; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24741112 24741112]; doi: [https://dx.doi.org/10.1074/mcp.M113.034702 10.1074/mcp.M113.034702]; GPMDB: [http://gpmdb.org/data/keyword/24741112 27]. | ||
+ | #Kuhlmann K, Tschapek A, Wiese H, Eisenacher M, Meyer HE, Hatt HH, Oeljeklaus S, Warscheid B, (2014) "The membrane proteome of sensory cilia to the depth of olfactory receptors." <i>Mol Cell Proteomics</i> <b>13</b>(7):1828–43; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24748648 24748648]; doi: [https://dx.doi.org/10.1074/mcp.M113.035378 10.1074/mcp.M113.035378]; GPMDB: [http://gpmdb.org/data/keyword/24748648 91]. | ||
#Sansoni V, Casas-Delucchi CS, Rajan M, Schmidt A, Bönisch C, Thomae AW, Staege MS, Hake SB, Cardoso MC, Imhof A, (2014) "The histone variant H2A.Bbd is enriched at sites of DNA synthesis." <i>Nucleic Acids Res</i> <b>42</b>(10):6405–20; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24753410 24753410]; doi: [https://dx.doi.org/10.1093/nar/gku303 10.1093/nar/gku303]; GPMDB: [http://gpmdb.org/data/keyword/24753410 96]. | #Sansoni V, Casas-Delucchi CS, Rajan M, Schmidt A, Bönisch C, Thomae AW, Staege MS, Hake SB, Cardoso MC, Imhof A, (2014) "The histone variant H2A.Bbd is enriched at sites of DNA synthesis." <i>Nucleic Acids Res</i> <b>42</b>(10):6405–20; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24753410 24753410]; doi: [https://dx.doi.org/10.1093/nar/gku303 10.1093/nar/gku303]; GPMDB: [http://gpmdb.org/data/keyword/24753410 96]. | ||
#Han D, Jin J, Woo J, Min H, Kim Y, (2014) "Proteomic analysis of mouse astrocytes and their secretome by a combination of FASP and StageTip-based, high pH, reversed-phase fractionation." <i>Proteomics</i> <b>14</b>(13-14):1604–9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24753479 24753479]; doi: [https://dx.doi.org/10.1002/pmic.201300495 10.1002/pmic.201300495]; GPMDB: [http://gpmdb.org/data/keyword/24753479 107]. | #Han D, Jin J, Woo J, Min H, Kim Y, (2014) "Proteomic analysis of mouse astrocytes and their secretome by a combination of FASP and StageTip-based, high pH, reversed-phase fractionation." <i>Proteomics</i> <b>14</b>(13-14):1604–9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24753479 24753479]; doi: [https://dx.doi.org/10.1002/pmic.201300495 10.1002/pmic.201300495]; GPMDB: [http://gpmdb.org/data/keyword/24753479 107]. | ||
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#de Graaf EL, Kaplon J, Zhou H, Heck AJ, Peeper DS, Altelaar AF, (2014) "Phosphoproteome dynamics in onset and maintenance of oncogene-induced senescence." <i>Mol Cell Proteomics</i> <b>13</b>(8):2089–100; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24961811 24961811]; doi: [https://dx.doi.org/10.1074/mcp.M113.035436 10.1074/mcp.M113.035436]; GPMDB: [http://gpmdb.org/data/keyword/24961811 223]. | #de Graaf EL, Kaplon J, Zhou H, Heck AJ, Peeper DS, Altelaar AF, (2014) "Phosphoproteome dynamics in onset and maintenance of oncogene-induced senescence." <i>Mol Cell Proteomics</i> <b>13</b>(8):2089–100; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24961811 24961811]; doi: [https://dx.doi.org/10.1074/mcp.M113.035436 10.1074/mcp.M113.035436]; GPMDB: [http://gpmdb.org/data/keyword/24961811 223]. | ||
#Iesmantavicius V, Weinert BT, Choudhary C, (2014) "Convergence of ubiquitylation and phosphorylation signaling in rapamycin-treated yeast cells." <i>Mol Cell Proteomics</i> <b>13</b>(8):1979–92; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24961812 24961812]; doi: [https://dx.doi.org/10.1074/mcp.O113.035683 10.1074/mcp.O113.035683]; GPMDB: [http://gpmdb.org/data/keyword/24961812 71]. | #Iesmantavicius V, Weinert BT, Choudhary C, (2014) "Convergence of ubiquitylation and phosphorylation signaling in rapamycin-treated yeast cells." <i>Mol Cell Proteomics</i> <b>13</b>(8):1979–92; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24961812 24961812]; doi: [https://dx.doi.org/10.1074/mcp.O113.035683 10.1074/mcp.O113.035683]; GPMDB: [http://gpmdb.org/data/keyword/24961812 71]. | ||
+ | #Jefferson M, Donaszi-Ivanov A, Pollen S, Dalmay T, Saalbach G, Powell PP, (2014) "Host factors that interact with the pestivirus N-terminal protease, Npro, are components of the ribonucleoprotein complex." <i>J Virol</i> <b>88</b>(18):10340–53; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24965446 24965446]; doi: [https://dx.doi.org/10.1128/JVI.00984-14 10.1128/JVI.00984-14]; GPMDB: [http://gpmdb.org/data/keyword/24965446 30]. | ||
#Milbradt J, Kraut A, Hutterer C, Sonntag E, Schmeiser C, Ferro M, Wagner S, Lenac T, Claus C, Pinkert S, Hamilton ST, Rawlinson WD, Sticht H, Couté Y, Marschall M, (2014) "Proteomic analysis of the multimeric nuclear egress complex of human cytomegalovirus." <i>Mol Cell Proteomics</i> <b>13</b>(8):2132–46; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24969177 24969177]; doi: [https://dx.doi.org/10.1074/mcp.M113.035782 10.1074/mcp.M113.035782]; GPMDB: [http://gpmdb.org/data/keyword/24969177 24]. | #Milbradt J, Kraut A, Hutterer C, Sonntag E, Schmeiser C, Ferro M, Wagner S, Lenac T, Claus C, Pinkert S, Hamilton ST, Rawlinson WD, Sticht H, Couté Y, Marschall M, (2014) "Proteomic analysis of the multimeric nuclear egress complex of human cytomegalovirus." <i>Mol Cell Proteomics</i> <b>13</b>(8):2132–46; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24969177 24969177]; doi: [https://dx.doi.org/10.1074/mcp.M113.035782 10.1074/mcp.M113.035782]; GPMDB: [http://gpmdb.org/data/keyword/24969177 24]. | ||
#Fischer MG, Kelly I, Foster LJ, Suttle CA, (2014) "The virion of Cafeteria roenbergensis virus (CroV) contains a complex suite of proteins for transcription and DNA repair." <i>Virology</i> <b>466-467</b>:82–94; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24973308 24973308]; doi: [https://dx.doi.org/10.1016/j.virol.2014.05.029 10.1016/j.virol.2014.05.029]; GPMDB: [http://gpmdb.org/data/keyword/24973308 10]. | #Fischer MG, Kelly I, Foster LJ, Suttle CA, (2014) "The virion of Cafeteria roenbergensis virus (CroV) contains a complex suite of proteins for transcription and DNA repair." <i>Virology</i> <b>466-467</b>:82–94; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24973308 24973308]; doi: [https://dx.doi.org/10.1016/j.virol.2014.05.029 10.1016/j.virol.2014.05.029]; GPMDB: [http://gpmdb.org/data/keyword/24973308 10]. | ||
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#Carvalho AS, Ribeiro H, Voabil P, Penque D, Jensen ON, Molina H, Matthiesen R, (2014) "Global mass spectrometry and transcriptomics array based drug profiling provides novel insight into glucosamine induced endoplasmic reticulum stress." <i>Mol Cell Proteomics</i> <b>13</b>(12):3294–307; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25128556 25128556]; doi: [https://dx.doi.org/10.1074/mcp.M113.034363 10.1074/mcp.M113.034363]; GPMDB: [http://gpmdb.org/data/keyword/25128556 18]. | #Carvalho AS, Ribeiro H, Voabil P, Penque D, Jensen ON, Molina H, Matthiesen R, (2014) "Global mass spectrometry and transcriptomics array based drug profiling provides novel insight into glucosamine induced endoplasmic reticulum stress." <i>Mol Cell Proteomics</i> <b>13</b>(12):3294–307; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25128556 25128556]; doi: [https://dx.doi.org/10.1074/mcp.M113.034363 10.1074/mcp.M113.034363]; GPMDB: [http://gpmdb.org/data/keyword/25128556 18]. | ||
#Surmann K, Michalik S, Hildebrandt P, Gierok P, Depke M, Brinkmann L, Bernhardt J, Salazar MG, Sun Z, Shteynberg D, Kusebauch U, Moritz RL, Wollscheid B, Lalk M, Völker U, Schmidt F, (2014) "Comparative proteome analysis reveals conserved and specific adaptation patterns of Staphylococcus aureus after internalization by different types of human non-professional phagocytic host cells." <i>Front Microbiol</i> <b>5</b>:392; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25136337 25136337]; doi: [https://dx.doi.org/10.3389/fmicb.2014.00392 10.3389/fmicb.2014.00392]; GPMDB: [http://gpmdb.org/data/keyword/25136337 71]. | #Surmann K, Michalik S, Hildebrandt P, Gierok P, Depke M, Brinkmann L, Bernhardt J, Salazar MG, Sun Z, Shteynberg D, Kusebauch U, Moritz RL, Wollscheid B, Lalk M, Völker U, Schmidt F, (2014) "Comparative proteome analysis reveals conserved and specific adaptation patterns of Staphylococcus aureus after internalization by different types of human non-professional phagocytic host cells." <i>Front Microbiol</i> <b>5</b>:392; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25136337 25136337]; doi: [https://dx.doi.org/10.3389/fmicb.2014.00392 10.3389/fmicb.2014.00392]; GPMDB: [http://gpmdb.org/data/keyword/25136337 71]. | ||
+ | #Worboys JD, Sinclair J, Yuan Y, Jørgensen C, (2014) "Systematic evaluation of quantotypic peptides for targeted analysis of the human kinome." <i>Nat Methods</i> <b>11</b>(10):1041–4; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25152083 25152083]; doi: [https://dx.doi.org/10.1038/nmeth.3072 10.1038/nmeth.3072]; GPMDB: [http://gpmdb.org/data/keyword/25152083 12]. | ||
#Moczulska KE, Pichler P, Schutzbier M, Schleiffer A, Rumpel S, Mechtler K, (2014) "Deep and precise quantification of the mouse synaptosomal proteome reveals substantial remodeling during postnatal maturation." <i>J Proteome Res</i> <b>13</b>(10):4310–24; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25157418 25157418]; doi: [https://dx.doi.org/10.1021/pr500456t 10.1021/pr500456t]; GPMDB: [http://gpmdb.org/data/keyword/25157418 100]. | #Moczulska KE, Pichler P, Schutzbier M, Schleiffer A, Rumpel S, Mechtler K, (2014) "Deep and precise quantification of the mouse synaptosomal proteome reveals substantial remodeling during postnatal maturation." <i>J Proteome Res</i> <b>13</b>(10):4310–24; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25157418 25157418]; doi: [https://dx.doi.org/10.1021/pr500456t 10.1021/pr500456t]; GPMDB: [http://gpmdb.org/data/keyword/25157418 100]. | ||
#Han D, Jin J, Yu J, Kim K, Kim Y, (2015) "Integrated approach using multistep enzyme digestion, TiO2 enrichment, and database search for in-depth phosphoproteomic profiling." <i>Proteomics</i> <b>15</b>(2-3):618–23; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25159016 25159016]; doi: [https://dx.doi.org/10.1002/pmic.201400102 10.1002/pmic.201400102]; GPMDB: [http://gpmdb.org/data/keyword/25159016 36]. | #Han D, Jin J, Yu J, Kim K, Kim Y, (2015) "Integrated approach using multistep enzyme digestion, TiO2 enrichment, and database search for in-depth phosphoproteomic profiling." <i>Proteomics</i> <b>15</b>(2-3):618–23; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25159016 25159016]; doi: [https://dx.doi.org/10.1002/pmic.201400102 10.1002/pmic.201400102]; GPMDB: [http://gpmdb.org/data/keyword/25159016 36]. | ||
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#Zappacosta F, Scott GF, Huddleston MJ, Annan RS, (2015) "An optimized platform for hydrophilic interaction chromatography-immobilized metal affinity chromatography enables deep coverage of the rat liver phosphoproteome." <i>J Proteome Res</i> <b>14</b>(2):997–1009; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25575281 25575281]; doi: [https://dx.doi.org/10.1021/pr501025e 10.1021/pr501025e]; GPMDB: [http://gpmdb.org/data/keyword/25575281 42]. | #Zappacosta F, Scott GF, Huddleston MJ, Annan RS, (2015) "An optimized platform for hydrophilic interaction chromatography-immobilized metal affinity chromatography enables deep coverage of the rat liver phosphoproteome." <i>J Proteome Res</i> <b>14</b>(2):997–1009; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25575281 25575281]; doi: [https://dx.doi.org/10.1021/pr501025e 10.1021/pr501025e]; GPMDB: [http://gpmdb.org/data/keyword/25575281 42]. | ||
#Bassani-Sternberg M, Pletscher-Frankild S, Jensen LJ, Mann M, (2015) "Mass spectrometry of human leukocyte antigen class I peptidomes reveals strong effects of protein abundance and turnover on antigen presentation." <i>Mol Cell Proteomics</i> <b>14</b>(3):658–73; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25576301 25576301]; doi: [https://dx.doi.org/10.1074/mcp.M114.042812 10.1074/mcp.M114.042812]; GPMDB: [http://gpmdb.org/data/keyword/25576301 40]. | #Bassani-Sternberg M, Pletscher-Frankild S, Jensen LJ, Mann M, (2015) "Mass spectrometry of human leukocyte antigen class I peptidomes reveals strong effects of protein abundance and turnover on antigen presentation." <i>Mol Cell Proteomics</i> <b>14</b>(3):658–73; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25576301 25576301]; doi: [https://dx.doi.org/10.1074/mcp.M114.042812 10.1074/mcp.M114.042812]; GPMDB: [http://gpmdb.org/data/keyword/25576301 40]. | ||
+ | #Hong JH, Kaustov L, Coyaud E, Srikumar T, Wan J, Arrowsmith C, Raught B, (2015) "KCMF1 (potassium channel modulatory factor 1) Links RAD6 to UBR4 (ubiquitin N-recognin domain-containing E3 ligase 4) and lysosome-mediated degradation." <i>Mol Cell Proteomics</i> <b>14</b>(3):674–85; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25582440 25582440]; doi: [https://dx.doi.org/10.1074/mcp.M114.042168 10.1074/mcp.M114.042168]; GPMDB: [http://gpmdb.org/data/keyword/25582440 58]. | ||
#Chiang DY, Lebesgue N, Beavers DL, Alsina KM, Damen JM, Voigt N, Dobrev D, Wehrens XH, Scholten A, (2015) "Alterations in the interactome of serine/threonine protein phosphatase type-1 in atrial fibrillation patients." <i>J Am Coll Cardiol</i> <b>65</b>(2):163–73; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25593058 25593058]; doi: [https://dx.doi.org/10.1016/j.jacc.2014.10.042 10.1016/j.jacc.2014.10.042]; GPMDB: [http://gpmdb.org/data/keyword/25593058 22]. | #Chiang DY, Lebesgue N, Beavers DL, Alsina KM, Damen JM, Voigt N, Dobrev D, Wehrens XH, Scholten A, (2015) "Alterations in the interactome of serine/threonine protein phosphatase type-1 in atrial fibrillation patients." <i>J Am Coll Cardiol</i> <b>65</b>(2):163–73; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25593058 25593058]; doi: [https://dx.doi.org/10.1016/j.jacc.2014.10.042 10.1016/j.jacc.2014.10.042]; GPMDB: [http://gpmdb.org/data/keyword/25593058 22]. | ||
#Kasvandik S, Sillaste G, Velthut-Meikas A, Mikelsaar AV, Hallap T, Padrik P, Tenson T, Jaakma Ü, Kõks S, Salumets A, (2015) "Bovine sperm plasma membrane proteomics through biotinylation and subcellular enrichment." <i>Proteomics</i> <b>15</b>(11):1906–20; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25603787 25603787]; doi: [https://dx.doi.org/10.1002/pmic.201400297 10.1002/pmic.201400297]; GPMDB: [http://gpmdb.org/data/keyword/25603787 16]. | #Kasvandik S, Sillaste G, Velthut-Meikas A, Mikelsaar AV, Hallap T, Padrik P, Tenson T, Jaakma Ü, Kõks S, Salumets A, (2015) "Bovine sperm plasma membrane proteomics through biotinylation and subcellular enrichment." <i>Proteomics</i> <b>15</b>(11):1906–20; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25603787 25603787]; doi: [https://dx.doi.org/10.1002/pmic.201400297 10.1002/pmic.201400297]; GPMDB: [http://gpmdb.org/data/keyword/25603787 16]. | ||
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#Krisp C, Yang H, van Soest R, Molloy MP, (2015) "Online Peptide fractionation using a multiphasic microfluidic liquid chromatography chip improves reproducibility and detection limits for quantitation in discovery and targeted proteomics." <i>Mol Cell Proteomics</i> <b>14</b>(6):1708–19; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25850434 25850434]; doi: [https://dx.doi.org/10.1074/mcp.M114.046425 10.1074/mcp.M114.046425]; GPMDB: [http://gpmdb.org/data/keyword/25850434 12]. | #Krisp C, Yang H, van Soest R, Molloy MP, (2015) "Online Peptide fractionation using a multiphasic microfluidic liquid chromatography chip improves reproducibility and detection limits for quantitation in discovery and targeted proteomics." <i>Mol Cell Proteomics</i> <b>14</b>(6):1708–19; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25850434 25850434]; doi: [https://dx.doi.org/10.1074/mcp.M114.046425 10.1074/mcp.M114.046425]; GPMDB: [http://gpmdb.org/data/keyword/25850434 12]. | ||
#Stuart SA, Houel S, Lee T, Wang N, Old WM, Ahn NG, (2015) "A Phosphoproteomic Comparison of B-RAFV600E and MKK1/2 Inhibitors in Melanoma Cells." <i>Mol Cell Proteomics</i> <b>14</b>(6):1599–615; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25850435 25850435]; doi: [https://dx.doi.org/10.1074/mcp.M114.047233 10.1074/mcp.M114.047233]; GPMDB: [http://gpmdb.org/data/keyword/25850435 255]. | #Stuart SA, Houel S, Lee T, Wang N, Old WM, Ahn NG, (2015) "A Phosphoproteomic Comparison of B-RAFV600E and MKK1/2 Inhibitors in Melanoma Cells." <i>Mol Cell Proteomics</i> <b>14</b>(6):1599–615; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25850435 25850435]; doi: [https://dx.doi.org/10.1074/mcp.M114.047233 10.1074/mcp.M114.047233]; GPMDB: [http://gpmdb.org/data/keyword/25850435 255]. | ||
+ | #Bergner SV, Scholz M, Trompelt K, Barth J, Gäbelein P, Steinbeck J, Xue H, Clowez S, Fucile G, Goldschmidt-Clermont M, Fufezan C, Hippler M, (2015) "STATE TRANSITION7-Dependent Phosphorylation Is Modulated by Changing Environmental Conditions, and Its Absence Triggers Remodeling of Photosynthetic Protein Complexes." <i>Plant Physiol</i> <b>168</b>(2):615–34; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25858915 25858915]; doi: [https://dx.doi.org/10.1104/pp.15.00072 10.1104/pp.15.00072]; GPMDB: [http://gpmdb.org/data/keyword/25858915 72]. | ||
#Oberstein A, Perlman DH, Shenk T, Terry LJ, (2015) "Human cytomegalovirus pUL97 kinase induces global changes in the infected cell phosphoproteome." <i>Proteomics</i> <b>15</b>(12):2006–22; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25867546 25867546]; doi: [https://dx.doi.org/10.1002/pmic.201400607 10.1002/pmic.201400607]; GPMDB: [http://gpmdb.org/data/keyword/25867546 8]. | #Oberstein A, Perlman DH, Shenk T, Terry LJ, (2015) "Human cytomegalovirus pUL97 kinase induces global changes in the infected cell phosphoproteome." <i>Proteomics</i> <b>15</b>(12):2006–22; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25867546 25867546]; doi: [https://dx.doi.org/10.1002/pmic.201400607 10.1002/pmic.201400607]; GPMDB: [http://gpmdb.org/data/keyword/25867546 8]. | ||
#Papadopoulos P, Gutiérrez L, Demmers J, Scheer E, Pourfarzad F, Papageorgiou DN, Karkoulia E, Strouboulis J, van de Werken HJ, van der Linden R, Vandenberghe P, Dekkers DH, Philipsen S, Grosveld F, Tora L, (2015) "TAF10 Interacts with the GATA1 Transcription Factor and Controls Mouse Erythropoiesis." <i>Mol Cell Biol</i> <b>35</b>(12):2103–18; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25870109 25870109]; doi: [https://dx.doi.org/10.1128/MCB.01370-14 10.1128/MCB.01370-14]; GPMDB: [http://gpmdb.org/data/keyword/25870109 4]. | #Papadopoulos P, Gutiérrez L, Demmers J, Scheer E, Pourfarzad F, Papageorgiou DN, Karkoulia E, Strouboulis J, van de Werken HJ, van der Linden R, Vandenberghe P, Dekkers DH, Philipsen S, Grosveld F, Tora L, (2015) "TAF10 Interacts with the GATA1 Transcription Factor and Controls Mouse Erythropoiesis." <i>Mol Cell Biol</i> <b>35</b>(12):2103–18; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25870109 25870109]; doi: [https://dx.doi.org/10.1128/MCB.01370-14 10.1128/MCB.01370-14]; GPMDB: [http://gpmdb.org/data/keyword/25870109 4]. | ||
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#Räschle M, Smeenk G, Hansen RK, Temu T, Oka Y, Hein MY, Nagaraj N, Long DT, Walter JC, Hofmann K, Storchova Z, Cox J, Bekker-Jensen S, Mailand N, Mann M, (2015) "DNA repair. Proteomics reveals dynamic assembly of repair complexes during bypass of DNA cross-links." <i>Science</i> <b>348</b>(6234):1253671; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25931565 25931565]; doi: [https://dx.doi.org/10.1126/science.1253671 10.1126/science.1253671]; GPMDB: [http://gpmdb.org/data/keyword/25931565 21]. | #Räschle M, Smeenk G, Hansen RK, Temu T, Oka Y, Hein MY, Nagaraj N, Long DT, Walter JC, Hofmann K, Storchova Z, Cox J, Bekker-Jensen S, Mailand N, Mann M, (2015) "DNA repair. Proteomics reveals dynamic assembly of repair complexes during bypass of DNA cross-links." <i>Science</i> <b>348</b>(6234):1253671; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25931565 25931565]; doi: [https://dx.doi.org/10.1126/science.1253671 10.1126/science.1253671]; GPMDB: [http://gpmdb.org/data/keyword/25931565 21]. | ||
#Penzo M, Rocchi L, Brugiere S, Carnicelli D, Onofrillo C, Couté Y, Brigotti M, Montanaro L, (2015) "Human ribosomes from cells with reduced dyskerin levels are intrinsically altered in translation." <i>FASEB J</i> <b>29</b>(8):3472–82; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25934701 25934701]; doi: [https://dx.doi.org/10.1096/fj.15-270991 10.1096/fj.15-270991]; GPMDB: [http://gpmdb.org/data/keyword/25934701 20]. | #Penzo M, Rocchi L, Brugiere S, Carnicelli D, Onofrillo C, Couté Y, Brigotti M, Montanaro L, (2015) "Human ribosomes from cells with reduced dyskerin levels are intrinsically altered in translation." <i>FASEB J</i> <b>29</b>(8):3472–82; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25934701 25934701]; doi: [https://dx.doi.org/10.1096/fj.15-270991 10.1096/fj.15-270991]; GPMDB: [http://gpmdb.org/data/keyword/25934701 20]. | ||
+ | #Böhm G, Prefot P, Jung S, Selzer S, Mitra V, Britton D, Kuhn K, Pike I, Thompson AH, (2015) "Low-pH Solid-Phase Amino Labeling of Complex Peptide Digests with TMTs Improves Peptide Identification Rates for Multiplexed Global Phosphopeptide Analysis." <i>J Proteome Res</i> <b>14</b>(6):2500–10; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25939058 25939058]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00072 10.1021/acs.jproteome.5b00072]; GPMDB: [http://gpmdb.org/data/keyword/25939058 18]. | ||
#Sjöström M, Ossola R, Breslin T, Rinner O, Malmström L, Schmidt A, Aebersold R, Malmström J, Niméus E, (2015) "A Combined Shotgun and Targeted Mass Spectrometry Strategy for Breast Cancer Biomarker Discovery." <i>J Proteome Res</i> <b>14</b>(7):2807–18; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25944384 25944384]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00315 10.1021/acs.jproteome.5b00315]; GPMDB: [http://gpmdb.org/data/keyword/25944384 238]. | #Sjöström M, Ossola R, Breslin T, Rinner O, Malmström L, Schmidt A, Aebersold R, Malmström J, Niméus E, (2015) "A Combined Shotgun and Targeted Mass Spectrometry Strategy for Breast Cancer Biomarker Discovery." <i>J Proteome Res</i> <b>14</b>(7):2807–18; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25944384 25944384]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00315 10.1021/acs.jproteome.5b00315]; GPMDB: [http://gpmdb.org/data/keyword/25944384 238]. | ||
#Svinkina T, Gu H, Silva JC, Mertins P, Qiao J, Fereshetian S, Jaffe JD, Kuhn E, Udeshi ND, Carr SA, (2015) "Deep, Quantitative Coverage of the Lysine Acetylome Using Novel Anti-acetyl-lysine Antibodies and an Optimized Proteomic Workflow." <i>Mol Cell Proteomics</i> <b>14</b>(9):2429–40; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25953088 25953088]; doi: [https://dx.doi.org/10.1074/mcp.O114.047555 10.1074/mcp.O114.047555]; GPMDB: [http://gpmdb.org/data/keyword/25953088 30]. | #Svinkina T, Gu H, Silva JC, Mertins P, Qiao J, Fereshetian S, Jaffe JD, Kuhn E, Udeshi ND, Carr SA, (2015) "Deep, Quantitative Coverage of the Lysine Acetylome Using Novel Anti-acetyl-lysine Antibodies and an Optimized Proteomic Workflow." <i>Mol Cell Proteomics</i> <b>14</b>(9):2429–40; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25953088 25953088]; doi: [https://dx.doi.org/10.1074/mcp.O114.047555 10.1074/mcp.O114.047555]; GPMDB: [http://gpmdb.org/data/keyword/25953088 30]. | ||
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#Hosp F, Vossfeldt H, Heinig M, Vasiljevic D, Arumughan A, Wyler E, Genetic and Environmental Risk for Alzheimer’s Disease GERAD1 Consortium., Landthaler M, Hubner N, Wanker EE, Lannfelt L, Ingelsson M, Lalowski M, Voigt A, Selbach M, (2015) "Quantitative interaction proteomics of neurodegenerative disease proteins." <i>Cell Rep</i> <b>11</b>(7):1134–46; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25959826 25959826]; doi: [https://dx.doi.org/10.1016/j.celrep.2015.04.030 10.1016/j.celrep.2015.04.030]; GPMDB: [http://gpmdb.org/data/keyword/25959826 122]. | #Hosp F, Vossfeldt H, Heinig M, Vasiljevic D, Arumughan A, Wyler E, Genetic and Environmental Risk for Alzheimer’s Disease GERAD1 Consortium., Landthaler M, Hubner N, Wanker EE, Lannfelt L, Ingelsson M, Lalowski M, Voigt A, Selbach M, (2015) "Quantitative interaction proteomics of neurodegenerative disease proteins." <i>Cell Rep</i> <b>11</b>(7):1134–46; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25959826 25959826]; doi: [https://dx.doi.org/10.1016/j.celrep.2015.04.030 10.1016/j.celrep.2015.04.030]; GPMDB: [http://gpmdb.org/data/keyword/25959826 122]. | ||
#Tay AP, Pang CN, Twine NA, Hart-Smith G, Harkness L, Kassem M, Wilkins MR, (2015) "Proteomic Validation of Transcript Isoforms, Including Those Assembled from RNA-Seq Data." <i>J Proteome Res</i> <b>14</b>(9):3541–54; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25961807 25961807]; doi: [https://dx.doi.org/10.1021/pr5011394 10.1021/pr5011394]; GPMDB: [http://gpmdb.org/data/keyword/25961807 77]. | #Tay AP, Pang CN, Twine NA, Hart-Smith G, Harkness L, Kassem M, Wilkins MR, (2015) "Proteomic Validation of Transcript Isoforms, Including Those Assembled from RNA-Seq Data." <i>J Proteome Res</i> <b>14</b>(9):3541–54; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25961807 25961807]; doi: [https://dx.doi.org/10.1021/pr5011394 10.1021/pr5011394]; GPMDB: [http://gpmdb.org/data/keyword/25961807 77]. | ||
+ | #Drissi R, Dubois ML, Douziech M, Boisvert FM, (2015) "Quantitative Proteomics Reveals Dynamic Interactions of the Minichromosome Maintenance Complex (MCM) in the Cellular Response to Etoposide Induced DNA Damage." <i>Mol Cell Proteomics</i> <b>14</b>(7):2002–13; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25963833 25963833]; doi: [https://dx.doi.org/10.1074/mcp.M115.048991 10.1074/mcp.M115.048991]; GPMDB: [http://gpmdb.org/data/keyword/25963833 48]. | ||
#Koch H, Busto ME, Kramer K, Médard G, Kuster B, (2015) "Chemical Proteomics Uncovers EPHA2 as a Mechanism of Acquired Resistance to Small Molecule EGFR Kinase Inhibition." <i>J Proteome Res</i> <b>14</b>(6):2617–25; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25963923 25963923]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00161 10.1021/acs.jproteome.5b00161]; GPMDB: [http://gpmdb.org/data/keyword/25963923 18]. | #Koch H, Busto ME, Kramer K, Médard G, Kuster B, (2015) "Chemical Proteomics Uncovers EPHA2 as a Mechanism of Acquired Resistance to Small Molecule EGFR Kinase Inhibition." <i>J Proteome Res</i> <b>14</b>(6):2617–25; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25963923 25963923]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00161 10.1021/acs.jproteome.5b00161]; GPMDB: [http://gpmdb.org/data/keyword/25963923 18]. | ||
#Watanabe S, Tan D, Lakshminarasimhan M, Washburn MP, Hong EJ, Walz T, Peterson CL, (2015) "Structural analyses of the chromatin remodelling enzymes INO80-C and SWR-C." <i>Nat Commun</i> <b>6</b>:7108; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25964121 25964121]; doi: [https://dx.doi.org/10.1038/ncomms8108 10.1038/ncomms8108]; GPMDB: [http://gpmdb.org/data/keyword/25964121 2]. | #Watanabe S, Tan D, Lakshminarasimhan M, Washburn MP, Hong EJ, Walz T, Peterson CL, (2015) "Structural analyses of the chromatin remodelling enzymes INO80-C and SWR-C." <i>Nat Commun</i> <b>6</b>:7108; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25964121 25964121]; doi: [https://dx.doi.org/10.1038/ncomms8108 10.1038/ncomms8108]; GPMDB: [http://gpmdb.org/data/keyword/25964121 2]. | ||
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#Higgins R, Gendron JM, Rising L, Mak R, Webb K, Kaiser SE, Zuzow N, Riviere P, Yang B, Fenech E, Tang X, Lindsay SA, Christianson JC, Hampton RY, Wasserman SA, Bennett EJ, (2015) "The Unfolded Protein Response Triggers Site-Specific Regulatory Ubiquitylation of 40S Ribosomal Proteins." <i>Mol Cell</i> <b>59</b>(1):35–49; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26051182 26051182]; doi: [https://dx.doi.org/10.1016/j.molcel.2015.04.026 10.1016/j.molcel.2015.04.026]; GPMDB: [http://gpmdb.org/data/keyword/26051182 54]. | #Higgins R, Gendron JM, Rising L, Mak R, Webb K, Kaiser SE, Zuzow N, Riviere P, Yang B, Fenech E, Tang X, Lindsay SA, Christianson JC, Hampton RY, Wasserman SA, Bennett EJ, (2015) "The Unfolded Protein Response Triggers Site-Specific Regulatory Ubiquitylation of 40S Ribosomal Proteins." <i>Mol Cell</i> <b>59</b>(1):35–49; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26051182 26051182]; doi: [https://dx.doi.org/10.1016/j.molcel.2015.04.026 10.1016/j.molcel.2015.04.026]; GPMDB: [http://gpmdb.org/data/keyword/26051182 54]. | ||
#Sethi MK, Thaysen-Andersen M, Kim H, Park CK, Baker MS, Packer NH, Paik YK, Hancock WS, Fanayan S, (2015) "Quantitative proteomic analysis of paired colorectal cancer and non-tumorigenic tissues reveals signature proteins and perturbed pathways involved in CRC progression and metastasis." <i>J Proteomics</i> <b>126</b>:54–67; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26054784 26054784]; doi: [https://dx.doi.org/10.1016/j.jprot.2015.05.037 10.1016/j.jprot.2015.05.037]; GPMDB: [http://gpmdb.org/data/keyword/26054784 15]. | #Sethi MK, Thaysen-Andersen M, Kim H, Park CK, Baker MS, Packer NH, Paik YK, Hancock WS, Fanayan S, (2015) "Quantitative proteomic analysis of paired colorectal cancer and non-tumorigenic tissues reveals signature proteins and perturbed pathways involved in CRC progression and metastasis." <i>J Proteomics</i> <b>126</b>:54–67; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26054784 26054784]; doi: [https://dx.doi.org/10.1016/j.jprot.2015.05.037 10.1016/j.jprot.2015.05.037]; GPMDB: [http://gpmdb.org/data/keyword/26054784 15]. | ||
- | #Cifani P, Kirik U, Waldemarson S, James P, (2015) "Molecular Portrait of Breast-Cancer-Derived Cell Lines Reveals Poor Similarity with Tumors." <i>J Proteome Res</i> <b>14</b>(7):2819–27; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26055192 26055192]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00375 10.1021/acs.jproteome.5b00375]; GPMDB: [http://gpmdb.org/data/keyword/26055192 | + | #Cifani P, Kirik U, Waldemarson S, James P, (2015) "Molecular Portrait of Breast-Cancer-Derived Cell Lines Reveals Poor Similarity with Tumors." <i>J Proteome Res</i> <b>14</b>(7):2819–27; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26055192 26055192]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00375 10.1021/acs.jproteome.5b00375]; GPMDB: [http://gpmdb.org/data/keyword/26055192 439]. |
#McCloy RA, Parker BL, Rogers S, Chaudhuri R, Gayevskiy V, Hoffman NJ, Ali N, Watkins DN, Daly RJ, James DE, Lorca T, Castro A, Burgess A, (2015) "Global Phosphoproteomic Mapping of Early Mitotic Exit in Human Cells Identifies Novel Substrate Dephosphorylation Motifs." <i>Mol Cell Proteomics</i> <b>14</b>(8):2194–212; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26055452 26055452]; doi: [https://dx.doi.org/10.1074/mcp.M114.046938 10.1074/mcp.M114.046938]; GPMDB: [http://gpmdb.org/data/keyword/26055452 29]. | #McCloy RA, Parker BL, Rogers S, Chaudhuri R, Gayevskiy V, Hoffman NJ, Ali N, Watkins DN, Daly RJ, James DE, Lorca T, Castro A, Burgess A, (2015) "Global Phosphoproteomic Mapping of Early Mitotic Exit in Human Cells Identifies Novel Substrate Dephosphorylation Motifs." <i>Mol Cell Proteomics</i> <b>14</b>(8):2194–212; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26055452 26055452]; doi: [https://dx.doi.org/10.1074/mcp.M114.046938 10.1074/mcp.M114.046938]; GPMDB: [http://gpmdb.org/data/keyword/26055452 29]. | ||
#Mulvey CM, Schröter C, Gatto L, Dikicioglu D, Fidaner IB, Christoforou A, Deery MJ, Cho LT, Niakan KK, Martinez-Arias A, Lilley KS, (2015) "Dynamic Proteomic Profiling of Extra-Embryonic Endoderm Differentiation in Mouse Embryonic Stem Cells." <i>Stem Cells</i> <b>33</b>(9):2712–25; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26059426 26059426]; doi: [https://dx.doi.org/10.1002/stem.2067 10.1002/stem.2067]; GPMDB: [http://gpmdb.org/data/keyword/26059426 7]. | #Mulvey CM, Schröter C, Gatto L, Dikicioglu D, Fidaner IB, Christoforou A, Deery MJ, Cho LT, Niakan KK, Martinez-Arias A, Lilley KS, (2015) "Dynamic Proteomic Profiling of Extra-Embryonic Endoderm Differentiation in Mouse Embryonic Stem Cells." <i>Stem Cells</i> <b>33</b>(9):2712–25; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26059426 26059426]; doi: [https://dx.doi.org/10.1002/stem.2067 10.1002/stem.2067]; GPMDB: [http://gpmdb.org/data/keyword/26059426 7]. | ||
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#Murphy JP, Stepanova E, Everley RA, Paulo JA, Gygi SP, (2015) "Comprehensive Temporal Protein Dynamics during the Diauxic Shift in Saccharomyces cerevisiae." <i>Mol Cell Proteomics</i> <b>14</b>(9):2454–65; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26077900 26077900]; doi: [https://dx.doi.org/10.1074/mcp.M114.045849 10.1074/mcp.M114.045849]; GPMDB: [http://gpmdb.org/data/keyword/26077900 66]. | #Murphy JP, Stepanova E, Everley RA, Paulo JA, Gygi SP, (2015) "Comprehensive Temporal Protein Dynamics during the Diauxic Shift in Saccharomyces cerevisiae." <i>Mol Cell Proteomics</i> <b>14</b>(9):2454–65; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26077900 26077900]; doi: [https://dx.doi.org/10.1074/mcp.M114.045849 10.1074/mcp.M114.045849]; GPMDB: [http://gpmdb.org/data/keyword/26077900 66]. | ||
#Wiśniewski JR, Gizak A, Rakus D, (2015) "Integrating Proteomics and Enzyme Kinetics Reveals Tissue-Specific Types of the Glycolytic and Gluconeogenic Pathways." <i>J Proteome Res</i> <b>14</b>(8):3263–73; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26080680 26080680]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00276 10.1021/acs.jproteome.5b00276]; GPMDB: [http://gpmdb.org/data/keyword/26080680 18]. | #Wiśniewski JR, Gizak A, Rakus D, (2015) "Integrating Proteomics and Enzyme Kinetics Reveals Tissue-Specific Types of the Glycolytic and Gluconeogenic Pathways." <i>J Proteome Res</i> <b>14</b>(8):3263–73; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26080680 26080680]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00276 10.1021/acs.jproteome.5b00276]; GPMDB: [http://gpmdb.org/data/keyword/26080680 18]. | ||
+ | #Yagoub D, Hart-Smith G, Moecking J, Erce MA, Wilkins MR, (2015) "Yeast proteins Gar1p, Nop1p, Npl3p, Nsr1p, and Rps2p are natively methylated and are substrates of the arginine methyltransferase Hmt1p." <i>Proteomics</i> <b>15</b>(18):3209–18; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26081071 26081071]; doi: [https://dx.doi.org/10.1002/pmic.201500075 10.1002/pmic.201500075]; GPMDB: [http://gpmdb.org/data/keyword/26081071 7]. | ||
#Mui MZ, Zhou Y, Blanchette P, Chughtai N, Knight JF, Gruosso T, Papadakis AI, Huang S, Park M, Gingras AC, Branton PE, (2015) "The Human Adenovirus Type 5 E4orf4 Protein Targets Two Phosphatase Regulators of the Hippo Signaling Pathway." <i>J Virol</i> <b>89</b>(17):8855–70; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26085163 26085163]; doi: [https://dx.doi.org/10.1128/JVI.03710-14 10.1128/JVI.03710-14]; GPMDB: [http://gpmdb.org/data/keyword/26085163 16]. | #Mui MZ, Zhou Y, Blanchette P, Chughtai N, Knight JF, Gruosso T, Papadakis AI, Huang S, Park M, Gingras AC, Branton PE, (2015) "The Human Adenovirus Type 5 E4orf4 Protein Targets Two Phosphatase Regulators of the Hippo Signaling Pathway." <i>J Virol</i> <b>89</b>(17):8855–70; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26085163 26085163]; doi: [https://dx.doi.org/10.1128/JVI.03710-14 10.1128/JVI.03710-14]; GPMDB: [http://gpmdb.org/data/keyword/26085163 16]. | ||
#Cehofski LJ, Kruse A, Kjærgaard B, Stensballe A, Honoré B, Vorum H, (2015) "Proteins involved in focal adhesion signaling pathways are differentially regulated in experimental branch retinal vein occlusion." <i>Exp Eye Res</i> <b>138</b>:87–95; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26086079 26086079]; doi: [https://dx.doi.org/10.1016/j.exer.2015.06.011 10.1016/j.exer.2015.06.011]; GPMDB: [http://gpmdb.org/data/keyword/26086079 48]. | #Cehofski LJ, Kruse A, Kjærgaard B, Stensballe A, Honoré B, Vorum H, (2015) "Proteins involved in focal adhesion signaling pathways are differentially regulated in experimental branch retinal vein occlusion." <i>Exp Eye Res</i> <b>138</b>:87–95; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26086079 26086079]; doi: [https://dx.doi.org/10.1016/j.exer.2015.06.011 10.1016/j.exer.2015.06.011]; GPMDB: [http://gpmdb.org/data/keyword/26086079 48]. | ||
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#Moche M, Schlüter R, Bernhardt J, Plate K, Riedel K, Hecker M, Becher D, (2015) "Time-Resolved Analysis of Cytosolic and Surface-Associated Proteins of Staphylococcus aureus HG001 under Planktonic and Biofilm Conditions." <i>J Proteome Res</i> <b>14</b>(9):3804–22; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26152824 26152824]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00148 10.1021/acs.jproteome.5b00148]; GPMDB: [http://gpmdb.org/data/keyword/26152824 924]. | #Moche M, Schlüter R, Bernhardt J, Plate K, Riedel K, Hecker M, Becher D, (2015) "Time-Resolved Analysis of Cytosolic and Surface-Associated Proteins of Staphylococcus aureus HG001 under Planktonic and Biofilm Conditions." <i>J Proteome Res</i> <b>14</b>(9):3804–22; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26152824 26152824]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00148 10.1021/acs.jproteome.5b00148]; GPMDB: [http://gpmdb.org/data/keyword/26152824 924]. | ||
#Caron E, Espona L, Kowalewski DJ, Schuster H, Ternette N, Alpízar A, Schittenhelm RB, Ramarathinam SH, Lindestam Arlehamn CS, Chiek Koh C, Gillet LC, Rabsteyn A, Navarro P, Kim S, Lam H, Sturm T, Marcilla M, Sette A, Campbell DS, Deutsch EW, Moritz RL, Purcell AW, Rammensee HG, Stevanovic S, Aebersold R, (2015) "An open-source computational and data resource to analyze digital maps of immunopeptidomes." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26154972 26154972]; doi: [https://dx.doi.org/10.7554/eLife.07661 10.7554/eLife.07661]; GPMDB: [http://gpmdb.org/data/keyword/26154972 70]. | #Caron E, Espona L, Kowalewski DJ, Schuster H, Ternette N, Alpízar A, Schittenhelm RB, Ramarathinam SH, Lindestam Arlehamn CS, Chiek Koh C, Gillet LC, Rabsteyn A, Navarro P, Kim S, Lam H, Sturm T, Marcilla M, Sette A, Campbell DS, Deutsch EW, Moritz RL, Purcell AW, Rammensee HG, Stevanovic S, Aebersold R, (2015) "An open-source computational and data resource to analyze digital maps of immunopeptidomes." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26154972 26154972]; doi: [https://dx.doi.org/10.7554/eLife.07661 10.7554/eLife.07661]; GPMDB: [http://gpmdb.org/data/keyword/26154972 70]. | ||
+ | #Madsen CT, Sylvestersen KB, Young C, Larsen SC, Poulsen JW, Andersen MA, Palmqvist EA, Hey-Mogensen M, Jensen PB, Treebak JT, Lisby M, Nielsen ML, (2015) "Biotin starvation causes mitochondrial protein hyperacetylation and partial rescue by the SIRT3-like deacetylase Hst4p." <i>Nat Commun</i> <b>6</b>:7726; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26158509 26158509]; doi: [https://dx.doi.org/10.1038/ncomms8726 10.1038/ncomms8726]; GPMDB: [http://gpmdb.org/data/keyword/26158509 47]. | ||
#Stroud DA, Maher MJ, Lindau C, Vögtle FN, Frazier AE, Surgenor E, Mountford H, Singh AP, Bonas M, Oeljeklaus S, Warscheid B, Meisinger C, Thorburn DR, Ryan MT, (2015) "COA6 is a mitochondrial complex IV assembly factor critical for biogenesis of mtDNA-encoded COX2." <i>Hum Mol Genet</i> <b>24</b>(19):5404–15; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26160915 26160915]; doi: [https://dx.doi.org/10.1093/hmg/ddv265 10.1093/hmg/ddv265]; GPMDB: [http://gpmdb.org/data/keyword/26160915 14]. | #Stroud DA, Maher MJ, Lindau C, Vögtle FN, Frazier AE, Surgenor E, Mountford H, Singh AP, Bonas M, Oeljeklaus S, Warscheid B, Meisinger C, Thorburn DR, Ryan MT, (2015) "COA6 is a mitochondrial complex IV assembly factor critical for biogenesis of mtDNA-encoded COX2." <i>Hum Mol Genet</i> <b>24</b>(19):5404–15; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26160915 26160915]; doi: [https://dx.doi.org/10.1093/hmg/ddv265 10.1093/hmg/ddv265]; GPMDB: [http://gpmdb.org/data/keyword/26160915 14]. | ||
#Jumeau F, Com E, Lane L, Duek P, Lagarrigue M, Lavigne R, Guillot L, Rondel K, Gateau A, Melaine N, Guével B, Sergeant N, Mitchell V, Pineau C, (2015) "Human Spermatozoa as a Model for Detecting Missing Proteins in the Context of the Chromosome-Centric Human Proteome Project." <i>J Proteome Res</i> <b>14</b>(9):3606–20; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26168773 26168773]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00170 10.1021/acs.jproteome.5b00170]; GPMDB: [http://gpmdb.org/data/keyword/26168773 63]. | #Jumeau F, Com E, Lane L, Duek P, Lagarrigue M, Lavigne R, Guillot L, Rondel K, Gateau A, Melaine N, Guével B, Sergeant N, Mitchell V, Pineau C, (2015) "Human Spermatozoa as a Model for Detecting Missing Proteins in the Context of the Chromosome-Centric Human Proteome Project." <i>J Proteome Res</i> <b>14</b>(9):3606–20; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26168773 26168773]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00170 10.1021/acs.jproteome.5b00170]; GPMDB: [http://gpmdb.org/data/keyword/26168773 63]. | ||
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#Wu X, Zahari MS, Renuse S, Nirujogi RS, Kim MS, Manda SS, Stearns V, Gabrielson E, Sukumar S, Pandey A, (2015) "Phosphoproteomic Analysis Identifies Focal Adhesion Kinase 2 (FAK2) as a Potential Therapeutic Target for Tamoxifen Resistance in Breast Cancer." <i>Mol Cell Proteomics</i> <b>14</b>(11):2887–900; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26330541 26330541]; doi: [https://dx.doi.org/10.1074/mcp.M115.050484 10.1074/mcp.M115.050484]; GPMDB: [http://gpmdb.org/data/keyword/26330541 29]. | #Wu X, Zahari MS, Renuse S, Nirujogi RS, Kim MS, Manda SS, Stearns V, Gabrielson E, Sukumar S, Pandey A, (2015) "Phosphoproteomic Analysis Identifies Focal Adhesion Kinase 2 (FAK2) as a Potential Therapeutic Target for Tamoxifen Resistance in Breast Cancer." <i>Mol Cell Proteomics</i> <b>14</b>(11):2887–900; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26330541 26330541]; doi: [https://dx.doi.org/10.1074/mcp.M115.050484 10.1074/mcp.M115.050484]; GPMDB: [http://gpmdb.org/data/keyword/26330541 29]. | ||
#Duhamel M, Rodet F, Delhem N, Vanden Abeele F, Kobeissy F, Nataf S, Pays L, Desjardins R, Gagnon H, Wisztorski M, Fournier I, Day R, Salzet M, (2015) "Molecular Consequences of Proprotein Convertase 1/3 (PC1/3) Inhibition in Macrophages for Application to Cancer Immunotherapy: A Proteomic Study." <i>Mol Cell Proteomics</i> <b>14</b>(11):2857–77; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26330543 26330543]; doi: [https://dx.doi.org/10.1074/mcp.M115.052480 10.1074/mcp.M115.052480]; GPMDB: [http://gpmdb.org/data/keyword/26330543 18]. | #Duhamel M, Rodet F, Delhem N, Vanden Abeele F, Kobeissy F, Nataf S, Pays L, Desjardins R, Gagnon H, Wisztorski M, Fournier I, Day R, Salzet M, (2015) "Molecular Consequences of Proprotein Convertase 1/3 (PC1/3) Inhibition in Macrophages for Application to Cancer Immunotherapy: A Proteomic Study." <i>Mol Cell Proteomics</i> <b>14</b>(11):2857–77; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26330543 26330543]; doi: [https://dx.doi.org/10.1074/mcp.M115.052480 10.1074/mcp.M115.052480]; GPMDB: [http://gpmdb.org/data/keyword/26330543 18]. | ||
+ | #Liebensteiner MG, Pinkse MW, Nijsse B, Verhaert PD, Tsesmetzis N, Stams AJ, Lomans BP, (2015) "Perchlorate and chlorate reduction by the Crenarchaeon Aeropyrum pernix and two thermophilic Firmicutes." <i>Environ Microbiol Rep</i> <b>7</b>(6):936–45; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26332065 26332065]; doi: [https://dx.doi.org/10.1111/1758-2229.12335 10.1111/1758-2229.12335]; GPMDB: [http://gpmdb.org/data/keyword/26332065 12]. | ||
#Lluch-Senar M, Cozzuto L, Cano J, Delgado J, Llórens-Rico V, Pereyre S, Bebear C, Serrano L, (2015) "Comparative "-omics" in Mycoplasma pneumoniae Clinical Isolates Reveals Key Virulence Factors." <i>PLoS One</i> <b>10</b>(9):e0137354; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26335586 26335586]; doi: [https://dx.doi.org/10.1371/journal.pone.0137354 10.1371/journal.pone.0137354]; GPMDB: [http://gpmdb.org/data/keyword/26335586 25]. | #Lluch-Senar M, Cozzuto L, Cano J, Delgado J, Llórens-Rico V, Pereyre S, Bebear C, Serrano L, (2015) "Comparative "-omics" in Mycoplasma pneumoniae Clinical Isolates Reveals Key Virulence Factors." <i>PLoS One</i> <b>10</b>(9):e0137354; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26335586 26335586]; doi: [https://dx.doi.org/10.1371/journal.pone.0137354 10.1371/journal.pone.0137354]; GPMDB: [http://gpmdb.org/data/keyword/26335586 25]. | ||
#White CH, Johnston HE, Moesker B, Manousopoulou A, Margolis DM, Richman DD, Spina CA, Garbis SD, Woelk CH, Beliakova-Bethell N, (2015) "Mixed effects of suberoylanilide hydroxamic acid (SAHA) on the host transcriptome and proteome and their implications for HIV reactivation from latency." <i>Antiviral Res</i> <b>123</b>:78–85; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26343910 26343910]; doi: [https://dx.doi.org/10.1016/j.antiviral.2015.09.002 10.1016/j.antiviral.2015.09.002]; GPMDB: [http://gpmdb.org/data/keyword/26343910 172]. | #White CH, Johnston HE, Moesker B, Manousopoulou A, Margolis DM, Richman DD, Spina CA, Garbis SD, Woelk CH, Beliakova-Bethell N, (2015) "Mixed effects of suberoylanilide hydroxamic acid (SAHA) on the host transcriptome and proteome and their implications for HIV reactivation from latency." <i>Antiviral Res</i> <b>123</b>:78–85; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26343910 26343910]; doi: [https://dx.doi.org/10.1016/j.antiviral.2015.09.002 10.1016/j.antiviral.2015.09.002]; GPMDB: [http://gpmdb.org/data/keyword/26343910 172]. | ||
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#Weinert BT, Moustafa T, Iesmantavicius V, Zechner R, Choudhary C, (2015) "Analysis of acetylation stoichiometry suggests that SIRT3 repairs nonenzymatic acetylation lesions." <i>EMBO J</i> <b>34</b>(21):2620–32; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26358839 26358839]; doi: [https://dx.doi.org/10.15252/embj.201591271 10.15252/embj.201591271]; GPMDB: [http://gpmdb.org/data/keyword/26358839 142]. | #Weinert BT, Moustafa T, Iesmantavicius V, Zechner R, Choudhary C, (2015) "Analysis of acetylation stoichiometry suggests that SIRT3 repairs nonenzymatic acetylation lesions." <i>EMBO J</i> <b>34</b>(21):2620–32; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26358839 26358839]; doi: [https://dx.doi.org/10.15252/embj.201591271 10.15252/embj.201591271]; GPMDB: [http://gpmdb.org/data/keyword/26358839 142]. | ||
#Grundner-Culemann K, Dybowski JN, Klammer M, Tebbe A, Schaab C, Daub H, (2016) "Comparative proteome analysis across non-small cell lung cancer cell lines." <i>J Proteomics</i> <b>130</b>:1–10; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26361996 26361996]; doi: [https://dx.doi.org/10.1016/j.jprot.2015.09.003 10.1016/j.jprot.2015.09.003]; GPMDB: [http://gpmdb.org/data/keyword/26361996 23]. | #Grundner-Culemann K, Dybowski JN, Klammer M, Tebbe A, Schaab C, Daub H, (2016) "Comparative proteome analysis across non-small cell lung cancer cell lines." <i>J Proteomics</i> <b>130</b>:1–10; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26361996 26361996]; doi: [https://dx.doi.org/10.1016/j.jprot.2015.09.003 10.1016/j.jprot.2015.09.003]; GPMDB: [http://gpmdb.org/data/keyword/26361996 23]. | ||
+ | #Mackowiak SD, Zauber H, Bielow C, Thiel D, Kutz K, Calviello L, Mastrobuoni G, Rajewsky N, Kempa S, Selbach M, Obermayer B, (2015) "Extensive identification and analysis of conserved small ORFs in animals." <i>Genome Biol</i> <b>16</b>:179; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26364619 26364619]; doi: [https://dx.doi.org/10.1186/s13059-015-0742-x 10.1186/s13059-015-0742-x]; GPMDB: [http://gpmdb.org/data/keyword/26364619 19]. | ||
+ | #Preil SA, Kristensen LP, Beck HC, Jensen PS, Nielsen PS, Steiniche T, Bjørling-Poulsen M, Larsen MR, Hansen ML, Rasmussen LM, (2015) "Quantitative Proteome Analysis Reveals Increased Content of Basement Membrane Proteins in Arteries From Patients With Type 2 Diabetes Mellitus and Lower Levels Among Metformin Users." <i>Circ Cardiovasc Genet</i> <b>8</b>(5):727–35; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26371159 26371159]; doi: [https://dx.doi.org/10.1161/CIRCGENETICS.115.001165 10.1161/CIRCGENETICS.115.001165]; GPMDB: [http://gpmdb.org/data/keyword/26371159 19]. | ||
#Lin MH, Sugiyama N, Ishihama Y, (2015) "Systematic profiling of the bacterial phosphoproteome reveals bacterium-specific features of phosphorylation." <i>Sci Signal</i> <b>8</b>(394):rs10; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26373674 26373674]; doi: [https://dx.doi.org/10.1126/scisignal.aaa3117 10.1126/scisignal.aaa3117]; GPMDB: [http://gpmdb.org/data/keyword/26373674 73]. | #Lin MH, Sugiyama N, Ishihama Y, (2015) "Systematic profiling of the bacterial phosphoproteome reveals bacterium-specific features of phosphorylation." <i>Sci Signal</i> <b>8</b>(394):rs10; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26373674 26373674]; doi: [https://dx.doi.org/10.1126/scisignal.aaa3117 10.1126/scisignal.aaa3117]; GPMDB: [http://gpmdb.org/data/keyword/26373674 73]. | ||
#Park AJ, Murphy K, Surette MD, Bandoro C, Krieger JR, Taylor P, Khursigara CM, (2015) "Tracking the Dynamic Relationship between Cellular Systems and Extracellular Subproteomes in Pseudomonas aeruginosa Biofilms." <i>J Proteome Res</i> <b>14</b>(11):4524–37; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26378716 26378716]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00262 10.1021/acs.jproteome.5b00262]; GPMDB: [http://gpmdb.org/data/keyword/26378716 34]. | #Park AJ, Murphy K, Surette MD, Bandoro C, Krieger JR, Taylor P, Khursigara CM, (2015) "Tracking the Dynamic Relationship between Cellular Systems and Extracellular Subproteomes in Pseudomonas aeruginosa Biofilms." <i>J Proteome Res</i> <b>14</b>(11):4524–37; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26378716 26378716]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00262 10.1021/acs.jproteome.5b00262]; GPMDB: [http://gpmdb.org/data/keyword/26378716 34]. | ||
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#Liu T, Tian CF, Chen WX, (2015) "Site-Specific Ser/Thr/Tyr Phosphoproteome of Sinorhizobium meliloti at Stationary Phase." <i>PLoS One</i> <b>10</b>(9):e0139143; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26401955 26401955]; doi: [https://dx.doi.org/10.1371/journal.pone.0139143 10.1371/journal.pone.0139143]; GPMDB: [http://gpmdb.org/data/keyword/26401955 2]. | #Liu T, Tian CF, Chen WX, (2015) "Site-Specific Ser/Thr/Tyr Phosphoproteome of Sinorhizobium meliloti at Stationary Phase." <i>PLoS One</i> <b>10</b>(9):e0139143; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26401955 26401955]; doi: [https://dx.doi.org/10.1371/journal.pone.0139143 10.1371/journal.pone.0139143]; GPMDB: [http://gpmdb.org/data/keyword/26401955 2]. | ||
#Li S, Dislich B, Brakebusch CH, Lichtenthaler SF, Brocker T, (2015) "Control of Homeostasis and Dendritic Cell Survival by the GTPase RhoA." <i>J Immunol</i> <b>195</b>(9):4244–56; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26408665 26408665]; doi: [https://dx.doi.org/10.4049/jimmunol.1500676 10.4049/jimmunol.1500676]; GPMDB: [http://gpmdb.org/data/keyword/26408665 60]. | #Li S, Dislich B, Brakebusch CH, Lichtenthaler SF, Brocker T, (2015) "Control of Homeostasis and Dendritic Cell Survival by the GTPase RhoA." <i>J Immunol</i> <b>195</b>(9):4244–56; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26408665 26408665]; doi: [https://dx.doi.org/10.4049/jimmunol.1500676 10.4049/jimmunol.1500676]; GPMDB: [http://gpmdb.org/data/keyword/26408665 60]. | ||
- | #Glatter T, Ahrné E, Schmidt A, (2015) "Comparison of Different Sample Preparation Protocols Reveals Lysis Buffer-Specific Extraction Biases in Gram-Negative Bacteria and Human Cells." <i>J Proteome Res</i> <b>14</b>(11):4472–85; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26412744 26412744]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00654 10.1021/acs.jproteome.5b00654]; GPMDB: [http://gpmdb.org/data/keyword/26412744 | + | #Beckley JR, Chen JS, Yang Y, Peng J, Gould KL, (2015) "A Degenerate Cohort of Yeast Membrane Trafficking DUBs Mediates Cell Polarity and Survival." <i>Mol Cell Proteomics</i> <b>14</b>(12):3132–41; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26412298 26412298]; doi: [https://dx.doi.org/10.1074/mcp.M115.050039 10.1074/mcp.M115.050039]; GPMDB: [http://gpmdb.org/data/keyword/26412298 246]. |
+ | #Glatter T, Ahrné E, Schmidt A, (2015) "Comparison of Different Sample Preparation Protocols Reveals Lysis Buffer-Specific Extraction Biases in Gram-Negative Bacteria and Human Cells." <i>J Proteome Res</i> <b>14</b>(11):4472–85; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26412744 26412744]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00654 10.1021/acs.jproteome.5b00654]; GPMDB: [http://gpmdb.org/data/keyword/26412744 901]. | ||
#Hadley KC, Rakhit R, Guo H, Sun Y, Jonkman JE, McLaurin J, Hazrati LN, Emili A, Chakrabartty A, (2015) "Determining composition of micron-scale protein deposits in neurodegenerative disease by spatially targeted optical microproteomics." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26418743 26418743]; doi: [https://dx.doi.org/10.7554/eLife.09579 10.7554/eLife.09579]; GPMDB: [http://gpmdb.org/data/keyword/26418743 12]. | #Hadley KC, Rakhit R, Guo H, Sun Y, Jonkman JE, McLaurin J, Hazrati LN, Emili A, Chakrabartty A, (2015) "Determining composition of micron-scale protein deposits in neurodegenerative disease by spatially targeted optical microproteomics." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26418743 26418743]; doi: [https://dx.doi.org/10.7554/eLife.09579 10.7554/eLife.09579]; GPMDB: [http://gpmdb.org/data/keyword/26418743 12]. | ||
#Gallart-Palau X, Serra A, Wong AS, Sandin S, Lai MK, Chen CP, Kon OL, Sze SK, (2015) "Extracellular vesicles are rapidly purified from human plasma by PRotein Organic Solvent PRecipitation (PROSPR)." <i>Sci Rep</i> <b>5</b>:14664; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26419333 26419333]; doi: [https://dx.doi.org/10.1038/srep14664 10.1038/srep14664]; GPMDB: [http://gpmdb.org/data/keyword/26419333 172]. | #Gallart-Palau X, Serra A, Wong AS, Sandin S, Lai MK, Chen CP, Kon OL, Sze SK, (2015) "Extracellular vesicles are rapidly purified from human plasma by PRotein Organic Solvent PRecipitation (PROSPR)." <i>Sci Rep</i> <b>5</b>:14664; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26419333 26419333]; doi: [https://dx.doi.org/10.1038/srep14664 10.1038/srep14664]; GPMDB: [http://gpmdb.org/data/keyword/26419333 172]. | ||
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#Geddes JM, Croll D, Caza M, Stoynov N, Foster LJ, Kronstad JW, (2015) "Secretome profiling of Cryptococcus neoformans reveals regulation of a subset of virulence-associated proteins and potential biomarkers by protein kinase A." <i>BMC Microbiol</i> <b>15</b>:206; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26453029 26453029]; doi: [https://dx.doi.org/10.1186/s12866-015-0532-3 10.1186/s12866-015-0532-3]; GPMDB: [http://gpmdb.org/data/keyword/26453029 48]. | #Geddes JM, Croll D, Caza M, Stoynov N, Foster LJ, Kronstad JW, (2015) "Secretome profiling of Cryptococcus neoformans reveals regulation of a subset of virulence-associated proteins and potential biomarkers by protein kinase A." <i>BMC Microbiol</i> <b>15</b>:206; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26453029 26453029]; doi: [https://dx.doi.org/10.1186/s12866-015-0532-3 10.1186/s12866-015-0532-3]; GPMDB: [http://gpmdb.org/data/keyword/26453029 48]. | ||
#Gomez-Auli A, Hillebrand LE, Biniossek ML, Peters C, Reinheckel T, Schilling O, (2016) "Impact of cathepsin B on the interstitial fluid proteome of murine breast cancers." <i>Biochimie</i> <b>122</b>:88–98; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26455267 26455267]; doi: [https://dx.doi.org/10.1016/j.biochi.2015.10.009 10.1016/j.biochi.2015.10.009]; GPMDB: [http://gpmdb.org/data/keyword/26455267 1]. | #Gomez-Auli A, Hillebrand LE, Biniossek ML, Peters C, Reinheckel T, Schilling O, (2016) "Impact of cathepsin B on the interstitial fluid proteome of murine breast cancers." <i>Biochimie</i> <b>122</b>:88–98; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26455267 26455267]; doi: [https://dx.doi.org/10.1016/j.biochi.2015.10.009 10.1016/j.biochi.2015.10.009]; GPMDB: [http://gpmdb.org/data/keyword/26455267 1]. | ||
+ | #Roos A, Kollipara L, Buchkremer S, Labisch T, Brauers E, Gatz C, Lentz C, Gerardo-Nava J, Weis J, Zahedi RP, (2016) "Cellular Signature of SIL1 Depletion: Disease Pathogenesis due to Alterations in Protein Composition Beyond the ER Machinery." <i>Mol Neurobiol</i> <b>53</b>(8):5527–41; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26468156 26468156]; doi: [https://dx.doi.org/10.1007/s12035-015-9456-z 10.1007/s12035-015-9456-z]; GPMDB: [http://gpmdb.org/data/keyword/26468156 18]. | ||
#Poli M, Ori A, Child T, Jaroudi S, Spath K, Beck M, Wells D, (2015) "Characterization and quantification of proteins secreted by single human embryos prior to implantation." <i>EMBO Mol Med</i> <b>7</b>(11):1465–79; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26471863 26471863]; doi: [https://dx.doi.org/10.15252/emmm.201505344 10.15252/emmm.201505344]; GPMDB: [http://gpmdb.org/data/keyword/26471863 11]. | #Poli M, Ori A, Child T, Jaroudi S, Spath K, Beck M, Wells D, (2015) "Characterization and quantification of proteins secreted by single human embryos prior to implantation." <i>EMBO Mol Med</i> <b>7</b>(11):1465–79; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26471863 26471863]; doi: [https://dx.doi.org/10.15252/emmm.201505344 10.15252/emmm.201505344]; GPMDB: [http://gpmdb.org/data/keyword/26471863 11]. | ||
#Schlage P, Kockmann T, Sabino F, Kizhakkedathu JN, Auf dem Keller U, (2015) "Matrix Metalloproteinase 10 Degradomics in Keratinocytes and Epidermal Tissue Identifies Bioactive Substrates With Pleiotropic Functions." <i>Mol Cell Proteomics</i> <b>14</b>(12):3234–46; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26475864 26475864]; doi: [https://dx.doi.org/10.1074/mcp.M115.053520 10.1074/mcp.M115.053520]; GPMDB: [http://gpmdb.org/data/keyword/26475864 25]. | #Schlage P, Kockmann T, Sabino F, Kizhakkedathu JN, Auf dem Keller U, (2015) "Matrix Metalloproteinase 10 Degradomics in Keratinocytes and Epidermal Tissue Identifies Bioactive Substrates With Pleiotropic Functions." <i>Mol Cell Proteomics</i> <b>14</b>(12):3234–46; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26475864 26475864]; doi: [https://dx.doi.org/10.1074/mcp.M115.053520 10.1074/mcp.M115.053520]; GPMDB: [http://gpmdb.org/data/keyword/26475864 25]. | ||
#Horton ER, Byron A, Askari JA, Ng DH, Millon-Frémillon A, Robertson J, Koper EJ, Paul NR, Warwood S, Knight D, Humphries JD, Humphries MJ, (2015) "Definition of a consensus integrin adhesome and its dynamics during adhesion complex assembly and disassembly." <i>Nat Cell Biol</i> <b>17</b>(12):1577–87; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26479319 26479319]; doi: [https://dx.doi.org/10.1038/ncb3257 10.1038/ncb3257]; GPMDB: [http://gpmdb.org/data/keyword/26479319 100]. | #Horton ER, Byron A, Askari JA, Ng DH, Millon-Frémillon A, Robertson J, Koper EJ, Paul NR, Warwood S, Knight D, Humphries JD, Humphries MJ, (2015) "Definition of a consensus integrin adhesome and its dynamics during adhesion complex assembly and disassembly." <i>Nat Cell Biol</i> <b>17</b>(12):1577–87; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26479319 26479319]; doi: [https://dx.doi.org/10.1038/ncb3257 10.1038/ncb3257]; GPMDB: [http://gpmdb.org/data/keyword/26479319 100]. | ||
#Hein MY, Hubner NC, Poser I, Cox J, Nagaraj N, Toyoda Y, Gak IA, Weisswange I, Mansfeld J, Buchholz F, Hyman AA, Mann M, (2015) "A human interactome in three quantitative dimensions organized by stoichiometries and abundances." <i>Cell</i> <b>163</b>(3):712–23; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26496610 26496610]; doi: [https://dx.doi.org/10.1016/j.cell.2015.09.053 10.1016/j.cell.2015.09.053]; GPMDB: [http://gpmdb.org/data/keyword/26496610 4296]. | #Hein MY, Hubner NC, Poser I, Cox J, Nagaraj N, Toyoda Y, Gak IA, Weisswange I, Mansfeld J, Buchholz F, Hyman AA, Mann M, (2015) "A human interactome in three quantitative dimensions organized by stoichiometries and abundances." <i>Cell</i> <b>163</b>(3):712–23; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26496610 26496610]; doi: [https://dx.doi.org/10.1016/j.cell.2015.09.053 10.1016/j.cell.2015.09.053]; GPMDB: [http://gpmdb.org/data/keyword/26496610 4296]. | ||
+ | #Isasa M, Rose CM, Elsasser S, Navarrete-Perea J, Paulo JA, Finley DJ, Gygi SP, (2015) "Multiplexed, Proteome-Wide Protein Expression Profiling: Yeast Deubiquitylating Enzyme Knockout Strains." <i>J Proteome Res</i> <b>14</b>(12):5306–17; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26503604 26503604]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00802 10.1021/acs.jproteome.5b00802]; GPMDB: [http://gpmdb.org/data/keyword/26503604 4]. | ||
#Hu CW, Hsu CL, Wang YC, Ishihama Y, Ku WC, Huang HC, Juan HF, (2015) "Temporal Phosphoproteome Dynamics Induced by an ATP Synthase Inhibitor Citreoviridin." <i>Mol Cell Proteomics</i> <b>14</b>(12):3284–98; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26503892 26503892]; doi: [https://dx.doi.org/10.1074/mcp.M115.051383 10.1074/mcp.M115.051383]; GPMDB: [http://gpmdb.org/data/keyword/26503892 48]. | #Hu CW, Hsu CL, Wang YC, Ishihama Y, Ku WC, Huang HC, Juan HF, (2015) "Temporal Phosphoproteome Dynamics Induced by an ATP Synthase Inhibitor Citreoviridin." <i>Mol Cell Proteomics</i> <b>14</b>(12):3284–98; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26503892 26503892]; doi: [https://dx.doi.org/10.1074/mcp.M115.051383 10.1074/mcp.M115.051383]; GPMDB: [http://gpmdb.org/data/keyword/26503892 48]. | ||
#O'Connor HF, Lyon N, Leung JW, Agarwal P, Swaim CD, Miller KM, Huibregtse JM, (2015) "Ubiquitin-Activated Interaction Traps (UBAITs) identify E3 ligase binding partners." <i>EMBO Rep</i> <b>16</b>(12):1699–712; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26508657 26508657]; doi: [https://dx.doi.org/10.15252/embr.201540620 10.15252/embr.201540620]; GPMDB: [http://gpmdb.org/data/keyword/26508657 74]. | #O'Connor HF, Lyon N, Leung JW, Agarwal P, Swaim CD, Miller KM, Huibregtse JM, (2015) "Ubiquitin-Activated Interaction Traps (UBAITs) identify E3 ligase binding partners." <i>EMBO Rep</i> <b>16</b>(12):1699–712; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26508657 26508657]; doi: [https://dx.doi.org/10.15252/embr.201540620 10.15252/embr.201540620]; GPMDB: [http://gpmdb.org/data/keyword/26508657 74]. | ||
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#Zhao Y, Valbuena G, Walker DH, Gazi M, Hidalgo M, DeSousa R, Oteo JA, Goez Y, Brasier AR, (2016) "Endothelial Cell Proteomic Response to Rickettsia conorii Infection Reveals Activation of the Janus Kinase (JAK)-Signal Transducer and Activator of Transcription (STAT)-Inferferon Stimulated Gene (ISG)15 Pathway and Reprogramming Plasma Membrane Integrin/Cadherin Signaling." <i>Mol Cell Proteomics</i> <b>15</b>(1):289–304; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26560068 26560068]; doi: [https://dx.doi.org/10.1074/mcp.M115.054361 10.1074/mcp.M115.054361]; GPMDB: [http://gpmdb.org/data/keyword/26560068 7]. | #Zhao Y, Valbuena G, Walker DH, Gazi M, Hidalgo M, DeSousa R, Oteo JA, Goez Y, Brasier AR, (2016) "Endothelial Cell Proteomic Response to Rickettsia conorii Infection Reveals Activation of the Janus Kinase (JAK)-Signal Transducer and Activator of Transcription (STAT)-Inferferon Stimulated Gene (ISG)15 Pathway and Reprogramming Plasma Membrane Integrin/Cadherin Signaling." <i>Mol Cell Proteomics</i> <b>15</b>(1):289–304; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26560068 26560068]; doi: [https://dx.doi.org/10.1074/mcp.M115.054361 10.1074/mcp.M115.054361]; GPMDB: [http://gpmdb.org/data/keyword/26560068 7]. | ||
#Tutakhel OA, Jeleń S, Valdez-Flores M, Dimke H, Piersma SR, Jimenez CR, Deinum J, Lenders JW, Hoenderop JG, Bindels RJ, (2016) "Alternative splice variant of the thiazide-sensitive NaCl cotransporter: a novel player in renal salt handling." <i>Am J Physiol Renal Physiol</i> <b>310</b>(3):F204–16; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26561651 26561651]; doi: [https://dx.doi.org/10.1152/ajprenal.00429.2015 10.1152/ajprenal.00429.2015]; GPMDB: [http://gpmdb.org/data/keyword/26561651 2]. | #Tutakhel OA, Jeleń S, Valdez-Flores M, Dimke H, Piersma SR, Jimenez CR, Deinum J, Lenders JW, Hoenderop JG, Bindels RJ, (2016) "Alternative splice variant of the thiazide-sensitive NaCl cotransporter: a novel player in renal salt handling." <i>Am J Physiol Renal Physiol</i> <b>310</b>(3):F204–16; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26561651 26561651]; doi: [https://dx.doi.org/10.1152/ajprenal.00429.2015 10.1152/ajprenal.00429.2015]; GPMDB: [http://gpmdb.org/data/keyword/26561651 2]. | ||
+ | #Slavov N, Semrau S, Airoldi E, Budnik B, van Oudenaarden A, (2015) "Differential Stoichiometry among Core Ribosomal Proteins." <i>Cell Rep</i> <b>13</b>(5):865–73; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26565899 26565899]; doi: [https://dx.doi.org/10.1016/j.celrep.2015.09.056 10.1016/j.celrep.2015.09.056]; GPMDB: [http://gpmdb.org/data/keyword/26565899 16]. | ||
#Sun S, Shah P, Eshghi ST, Yang W, Trikannad N, Yang S, Chen L, Aiyetan P, Höti N, Zhang Z, Chan DW, Zhang H, (2016) "Comprehensive analysis of protein glycosylation by solid-phase extraction of N-linked glycans and glycosite-containing peptides." <i>Nat Biotechnol</i> <b>34</b>(1):84–8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26571101 26571101]; doi: [https://dx.doi.org/10.1038/nbt.3403 10.1038/nbt.3403]; GPMDB: [http://gpmdb.org/data/keyword/26571101 55]. | #Sun S, Shah P, Eshghi ST, Yang W, Trikannad N, Yang S, Chen L, Aiyetan P, Höti N, Zhang Z, Chan DW, Zhang H, (2016) "Comprehensive analysis of protein glycosylation by solid-phase extraction of N-linked glycans and glycosite-containing peptides." <i>Nat Biotechnol</i> <b>34</b>(1):84–8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26571101 26571101]; doi: [https://dx.doi.org/10.1038/nbt.3403 10.1038/nbt.3403]; GPMDB: [http://gpmdb.org/data/keyword/26571101 55]. | ||
#Wagner SA, Oehler H, Voigt A, Dalic D, Freiwald A, Serve H, Beli P, (2016) "ATR inhibition rewires cellular signaling networks induced by replication stress." <i>Proteomics</i> <b>16</b>(3):402–16; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26572502 26572502]; doi: [https://dx.doi.org/10.1002/pmic.201500172 10.1002/pmic.201500172]; GPMDB: [http://gpmdb.org/data/keyword/26572502 20]. | #Wagner SA, Oehler H, Voigt A, Dalic D, Freiwald A, Serve H, Beli P, (2016) "ATR inhibition rewires cellular signaling networks induced by replication stress." <i>Proteomics</i> <b>16</b>(3):402–16; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26572502 26572502]; doi: [https://dx.doi.org/10.1002/pmic.201500172 10.1002/pmic.201500172]; GPMDB: [http://gpmdb.org/data/keyword/26572502 20]. | ||
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#Lluch-Senar M, Mancuso FM, Climente-González H, Peña-Paz MI, Sabido E, Serrano L, (2016) "Rescuing discarded spectra: Full comprehensive analysis of a minimal proteome." <i>Proteomics</i> <b>16</b>(4):554–63; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26702875 26702875]; doi: [https://dx.doi.org/10.1002/pmic.201500187 10.1002/pmic.201500187]; GPMDB: [http://gpmdb.org/data/keyword/26702875 2]. | #Lluch-Senar M, Mancuso FM, Climente-González H, Peña-Paz MI, Sabido E, Serrano L, (2016) "Rescuing discarded spectra: Full comprehensive analysis of a minimal proteome." <i>Proteomics</i> <b>16</b>(4):554–63; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26702875 26702875]; doi: [https://dx.doi.org/10.1002/pmic.201500187 10.1002/pmic.201500187]; GPMDB: [http://gpmdb.org/data/keyword/26702875 2]. | ||
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#Bode D, Yu L, Tate P, Pardo M, Choudhary J, (2016) "Characterization of Two Distinct Nucleosome Remodeling and Deacetylase (NuRD) Complex Assemblies in Embryonic Stem Cells." <i>Mol Cell Proteomics</i> <b>15</b>(3):878–91; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26714524 26714524]; doi: [https://dx.doi.org/10.1074/mcp.M115.053207 10.1074/mcp.M115.053207]; GPMDB: [http://gpmdb.org/data/keyword/26714524 179]. | #Bode D, Yu L, Tate P, Pardo M, Choudhary J, (2016) "Characterization of Two Distinct Nucleosome Remodeling and Deacetylase (NuRD) Complex Assemblies in Embryonic Stem Cells." <i>Mol Cell Proteomics</i> <b>15</b>(3):878–91; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26714524 26714524]; doi: [https://dx.doi.org/10.1074/mcp.M115.053207 10.1074/mcp.M115.053207]; GPMDB: [http://gpmdb.org/data/keyword/26714524 179]. | ||
#McAfee A, Harpur BA, Michaud S, Beavis RC, Kent CF, Zayed A, Foster LJ, (2016) "Toward an Upgraded Honey Bee (Apis mellifera L.) Genome Annotation Using Proteogenomics." <i>J Proteome Res</i> <b>15</b>(2):411–21; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26718741 26718741]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00589 10.1021/acs.jproteome.5b00589]; GPMDB: [http://gpmdb.org/data/keyword/26718741 27]. | #McAfee A, Harpur BA, Michaud S, Beavis RC, Kent CF, Zayed A, Foster LJ, (2016) "Toward an Upgraded Honey Bee (Apis mellifera L.) Genome Annotation Using Proteogenomics." <i>J Proteome Res</i> <b>15</b>(2):411–21; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26718741 26718741]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00589 10.1021/acs.jproteome.5b00589]; GPMDB: [http://gpmdb.org/data/keyword/26718741 27]. | ||
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#Kristensen TN, Kjeldal H, Schou MF, Nielsen JL, (2016) "Proteomic data reveal a physiological basis for costs and benefits associated with thermal acclimation." <i>J Exp Biol</i> <b>219</b>(Pt 7):969–76; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26823104 26823104]; doi: [https://dx.doi.org/10.1242/jeb.132696 10.1242/jeb.132696]; GPMDB: [http://gpmdb.org/data/keyword/26823104 9]. | #Kristensen TN, Kjeldal H, Schou MF, Nielsen JL, (2016) "Proteomic data reveal a physiological basis for costs and benefits associated with thermal acclimation." <i>J Exp Biol</i> <b>219</b>(Pt 7):969–76; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26823104 26823104]; doi: [https://dx.doi.org/10.1242/jeb.132696 10.1242/jeb.132696]; GPMDB: [http://gpmdb.org/data/keyword/26823104 9]. | ||
#Steger M, Tonelli F, Ito G, Davies P, Trost M, Vetter M, Wachter S, Lorentzen E, Duddy G, Wilson S, Baptista MA, Fiske BK, Fell MJ, Morrow JA, Reith AD, Alessi DR, Mann M, (2016) "Phosphoproteomics reveals that Parkinson's disease kinase LRRK2 regulates a subset of Rab GTPases." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26824392 26824392]; doi: [https://dx.doi.org/10.7554/eLife.12813 10.7554/eLife.12813]; GPMDB: [http://gpmdb.org/data/keyword/26824392 216]. | #Steger M, Tonelli F, Ito G, Davies P, Trost M, Vetter M, Wachter S, Lorentzen E, Duddy G, Wilson S, Baptista MA, Fiske BK, Fell MJ, Morrow JA, Reith AD, Alessi DR, Mann M, (2016) "Phosphoproteomics reveals that Parkinson's disease kinase LRRK2 regulates a subset of Rab GTPases." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26824392 26824392]; doi: [https://dx.doi.org/10.7554/eLife.12813 10.7554/eLife.12813]; GPMDB: [http://gpmdb.org/data/keyword/26824392 216]. | ||
- | # () "" <i></i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/ ]; GPMDB: [http://gpmdb.org/data/keyword/ | + | #Wiśniewski JR, Vildhede A, Norén A, Artursson P, (2016) "In-depth quantitative analysis and comparison of the human hepatocyte and hepatoma cell line HepG2 proteomes." <i>J Proteomics</i> <b>136</b>:234–47; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26825538 26825538]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.01.016 10.1016/j.jprot.2016.01.016]; GPMDB: [http://gpmdb.org/data/keyword/26825538 122]. |
#Lichtman JS, Ferreyra JA, Ng KM, Smits SA, Sonnenburg JL, Elias JE, (2016) "Host-Microbiota Interactions in the Pathogenesis of Antibiotic-Associated Diseases." <i>Cell Rep</i> <b>14</b>(5):1049–61; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26832403 26832403]; doi: [https://dx.doi.org/10.1016/j.celrep.2016.01.009 10.1016/j.celrep.2016.01.009]; GPMDB: [http://gpmdb.org/data/keyword/26832403 486]. | #Lichtman JS, Ferreyra JA, Ng KM, Smits SA, Sonnenburg JL, Elias JE, (2016) "Host-Microbiota Interactions in the Pathogenesis of Antibiotic-Associated Diseases." <i>Cell Rep</i> <b>14</b>(5):1049–61; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26832403 26832403]; doi: [https://dx.doi.org/10.1016/j.celrep.2016.01.009 10.1016/j.celrep.2016.01.009]; GPMDB: [http://gpmdb.org/data/keyword/26832403 486]. | ||
#Lechman ER, Gentner B, Ng SW, Schoof EM, van Galen P, Kennedy JA, Nucera S, Ciceri F, Kaufmann KB, Takayama N, Dobson SM, Trotman-Grant A, Krivdova G, Elzinga J, Mitchell A, Nilsson B, Hermans KG, Eppert K, Marke R, Isserlin R, Voisin V, Bader GD, Zandstra PW, Golub TR, Ebert BL, Lu J, Minden M, Wang JC, Naldini L, Dick JE, (2016) "miR-126 Regulates Distinct Self-Renewal Outcomes in Normal and Malignant Hematopoietic Stem Cells." <i>Cancer Cell</i> <b>29</b>(2):214–28; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26832662 26832662]; doi: [https://dx.doi.org/10.1016/j.ccell.2015.12.011 10.1016/j.ccell.2015.12.011]; GPMDB: [http://gpmdb.org/data/keyword/26832662 72]. | #Lechman ER, Gentner B, Ng SW, Schoof EM, van Galen P, Kennedy JA, Nucera S, Ciceri F, Kaufmann KB, Takayama N, Dobson SM, Trotman-Grant A, Krivdova G, Elzinga J, Mitchell A, Nilsson B, Hermans KG, Eppert K, Marke R, Isserlin R, Voisin V, Bader GD, Zandstra PW, Golub TR, Ebert BL, Lu J, Minden M, Wang JC, Naldini L, Dick JE, (2016) "miR-126 Regulates Distinct Self-Renewal Outcomes in Normal and Malignant Hematopoietic Stem Cells." <i>Cancer Cell</i> <b>29</b>(2):214–28; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26832662 26832662]; doi: [https://dx.doi.org/10.1016/j.ccell.2015.12.011 10.1016/j.ccell.2015.12.011]; GPMDB: [http://gpmdb.org/data/keyword/26832662 72]. | ||
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#Kowal J, Arras G, Colombo M, Jouve M, Morath JP, Primdal-Bengtson B, Dingli F, Loew D, Tkach M, Théry C, (2016) "Proteomic comparison defines novel markers to characterize heterogeneous populations of extracellular vesicle subtypes." <i>Proc Natl Acad Sci U S A</i> <b>113</b>(8):E968–77; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26858453 26858453]; doi: [https://dx.doi.org/10.1073/pnas.1521230113 10.1073/pnas.1521230113]; GPMDB: [http://gpmdb.org/data/keyword/26858453 56]. | #Kowal J, Arras G, Colombo M, Jouve M, Morath JP, Primdal-Bengtson B, Dingli F, Loew D, Tkach M, Théry C, (2016) "Proteomic comparison defines novel markers to characterize heterogeneous populations of extracellular vesicle subtypes." <i>Proc Natl Acad Sci U S A</i> <b>113</b>(8):E968–77; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26858453 26858453]; doi: [https://dx.doi.org/10.1073/pnas.1521230113 10.1073/pnas.1521230113]; GPMDB: [http://gpmdb.org/data/keyword/26858453 56]. | ||
#Locard-Paulet M, Lim L, Veluscek G, McMahon K, Sinclair J, van Weverwijk A, Worboys JD, Yuan Y, Isacke CM, Jørgensen C, (2016) "Phosphoproteomic analysis of interacting tumor and endothelial cells identifies regulatory mechanisms of transendothelial migration." <i>Sci Signal</i> <b>9</b>(414):ra15; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26861043 26861043]; doi: [https://dx.doi.org/10.1126/scisignal.aac5820 10.1126/scisignal.aac5820]; GPMDB: [http://gpmdb.org/data/keyword/26861043 76]. | #Locard-Paulet M, Lim L, Veluscek G, McMahon K, Sinclair J, van Weverwijk A, Worboys JD, Yuan Y, Isacke CM, Jørgensen C, (2016) "Phosphoproteomic analysis of interacting tumor and endothelial cells identifies regulatory mechanisms of transendothelial migration." <i>Sci Signal</i> <b>9</b>(414):ra15; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26861043 26861043]; doi: [https://dx.doi.org/10.1126/scisignal.aac5820 10.1126/scisignal.aac5820]; GPMDB: [http://gpmdb.org/data/keyword/26861043 76]. | ||
- | #Prior KK, Wittig I, Leisegang MS, Groenendyk J, Weissmann N, Michalak M, Jansen-Dürr P, Shah AM, Brandes RP, (2016) "The Endoplasmic Reticulum Chaperone Calnexin Is a NADPH Oxidase NOX4 Interacting Protein." <i>J Biol Chem</i> <b>291</b>(13):7045–59; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26861875 26861875]; doi: [https://dx.doi.org/10.1074/jbc.M115.710772 10.1074/jbc.M115.710772]; GPMDB: [http://gpmdb.org/data/keyword/26861875 | + | #Prior KK, Wittig I, Leisegang MS, Groenendyk J, Weissmann N, Michalak M, Jansen-Dürr P, Shah AM, Brandes RP, (2016) "The Endoplasmic Reticulum Chaperone Calnexin Is a NADPH Oxidase NOX4 Interacting Protein." <i>J Biol Chem</i> <b>291</b>(13):7045–59; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26861875 26861875]; doi: [https://dx.doi.org/10.1074/jbc.M115.710772 10.1074/jbc.M115.710772]; GPMDB: [http://gpmdb.org/data/keyword/26861875 120]. |
#Ramus C, Hovasse A, Marcellin M, Hesse AM, Mouton-Barbosa E, Bouyssié D, Vaca S, Carapito C, Chaoui K, Bruley C, Garin J, Cianférani S, Ferro M, Dorssaeler AV, Burlet-Schiltz O, Schaeffer C, Couté Y, Gonzalez de Peredo A, (2015) "Spiked proteomic standard dataset for testing label-free quantitative software and statistical methods." <i>Data Brief</i> <b>6</b>:286–94; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26862574 26862574]; doi: [https://dx.doi.org/10.1016/j.dib.2015.11.063 10.1016/j.dib.2015.11.063]; GPMDB: [http://gpmdb.org/data/keyword/26862574 27]. | #Ramus C, Hovasse A, Marcellin M, Hesse AM, Mouton-Barbosa E, Bouyssié D, Vaca S, Carapito C, Chaoui K, Bruley C, Garin J, Cianférani S, Ferro M, Dorssaeler AV, Burlet-Schiltz O, Schaeffer C, Couté Y, Gonzalez de Peredo A, (2015) "Spiked proteomic standard dataset for testing label-free quantitative software and statistical methods." <i>Data Brief</i> <b>6</b>:286–94; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26862574 26862574]; doi: [https://dx.doi.org/10.1016/j.dib.2015.11.063 10.1016/j.dib.2015.11.063]; GPMDB: [http://gpmdb.org/data/keyword/26862574 27]. | ||
#Sahebekhtiari N, Thomsen MM, Sloth JJ, Stenbroen V, Zeviani M, Gregersen N, Viscomi C, Palmfeldt J, (2016) "Quantitative proteomics suggests metabolic reprogramming during ETHE1 deficiency." <i>Proteomics</i> <b>16</b>(7):1166–76; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26867521 26867521]; doi: [https://dx.doi.org/10.1002/pmic.201500336 10.1002/pmic.201500336]; GPMDB: [http://gpmdb.org/data/keyword/26867521 50]. | #Sahebekhtiari N, Thomsen MM, Sloth JJ, Stenbroen V, Zeviani M, Gregersen N, Viscomi C, Palmfeldt J, (2016) "Quantitative proteomics suggests metabolic reprogramming during ETHE1 deficiency." <i>Proteomics</i> <b>16</b>(7):1166–76; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26867521 26867521]; doi: [https://dx.doi.org/10.1002/pmic.201500336 10.1002/pmic.201500336]; GPMDB: [http://gpmdb.org/data/keyword/26867521 50]. | ||
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#Xu B, Gao Y, Zhan S, Xiong F, Qiu W, Qian X, Wang T, Wang N, Zhang D, Yang Q, Wang R, Bao X, Dou W, Tian R, Meng S, Gai WP, Huang Y, Yan XX, Ge W, Ma C, (2016) "Quantitative protein profiling of hippocampus during human aging." <i>Neurobiol Aging</i> <b>39</b>:46–56; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26923401 26923401]; doi: [https://dx.doi.org/10.1016/j.neurobiolaging.2015.11.029 10.1016/j.neurobiolaging.2015.11.029]; GPMDB: [http://gpmdb.org/data/keyword/26923401 20]. | #Xu B, Gao Y, Zhan S, Xiong F, Qiu W, Qian X, Wang T, Wang N, Zhang D, Yang Q, Wang R, Bao X, Dou W, Tian R, Meng S, Gai WP, Huang Y, Yan XX, Ge W, Ma C, (2016) "Quantitative protein profiling of hippocampus during human aging." <i>Neurobiol Aging</i> <b>39</b>:46–56; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26923401 26923401]; doi: [https://dx.doi.org/10.1016/j.neurobiolaging.2015.11.029 10.1016/j.neurobiolaging.2015.11.029]; GPMDB: [http://gpmdb.org/data/keyword/26923401 20]. | ||
#Reddy RJ, Gajadhar AS, Swenson EJ, Rothenberg DA, Curran TG, White FM, (2016) "Early signaling dynamics of the epidermal growth factor receptor." <i>Proc Natl Acad Sci U S A</i> <b>113</b>(11):3114–9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26929352 26929352]; doi: [https://dx.doi.org/10.1073/pnas.1521288113 10.1073/pnas.1521288113]; GPMDB: [http://gpmdb.org/data/keyword/26929352 30]. | #Reddy RJ, Gajadhar AS, Swenson EJ, Rothenberg DA, Curran TG, White FM, (2016) "Early signaling dynamics of the epidermal growth factor receptor." <i>Proc Natl Acad Sci U S A</i> <b>113</b>(11):3114–9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26929352 26929352]; doi: [https://dx.doi.org/10.1073/pnas.1521288113 10.1073/pnas.1521288113]; GPMDB: [http://gpmdb.org/data/keyword/26929352 30]. | ||
+ | #Bigenzahn JW, Fauster A, Rebsamen M, Kandasamy RK, Scorzoni S, Vladimer GI, Müller AC, Gstaiger M, Zuber J, Bennett KL, Superti-Furga G, (2016) "An Inducible Retroviral Expression System for Tandem Affinity Purification Mass-Spectrometry-Based Proteomics Identifies Mixed Lineage Kinase Domain-like Protein (MLKL) as an Heat Shock Protein 90 (HSP90) Client." <i>Mol Cell Proteomics</i> <b>15</b>(3):1139–50; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26933192 26933192]; doi: [https://dx.doi.org/10.1074/mcp.O115.055350 10.1074/mcp.O115.055350 ]; GPMDB: [http://gpmdb.org/data/keyword/26933192 16]. | ||
#de Torre-Minguela C, Barberà-Cremades M, Gómez AI, Martín-Sánchez F, Pelegrín P, (2016) "Macrophage activation and polarization modify P2X7 receptor secretome influencing the inflammatory process." <i>Sci Rep</i> <b>6</b>:22586; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26935289 26935289]; doi: [https://dx.doi.org/10.1038/srep22586 10.1038/srep22586]; GPMDB: [http://gpmdb.org/data/keyword/26935289 118]. | #de Torre-Minguela C, Barberà-Cremades M, Gómez AI, Martín-Sánchez F, Pelegrín P, (2016) "Macrophage activation and polarization modify P2X7 receptor secretome influencing the inflammatory process." <i>Sci Rep</i> <b>6</b>:22586; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26935289 26935289]; doi: [https://dx.doi.org/10.1038/srep22586 10.1038/srep22586]; GPMDB: [http://gpmdb.org/data/keyword/26935289 118]. | ||
#Ly A, Merl-Pham J, Priller M, Gruhn F, Senninger N, Ueffing M, Hauck SM, (2016) "Proteomic Profiling Suggests Central Role Of STAT Signaling during Retinal Degeneration in the rd10 Mouse Model." <i>J Proteome Res</i> <b>15</b>(4):1350–9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26939627 26939627]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00111 10.1021/acs.jproteome.6b00111]; GPMDB: [http://gpmdb.org/data/keyword/26939627 24]. | #Ly A, Merl-Pham J, Priller M, Gruhn F, Senninger N, Ueffing M, Hauck SM, (2016) "Proteomic Profiling Suggests Central Role Of STAT Signaling during Retinal Degeneration in the rd10 Mouse Model." <i>J Proteome Res</i> <b>15</b>(4):1350–9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26939627 26939627]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00111 10.1021/acs.jproteome.6b00111]; GPMDB: [http://gpmdb.org/data/keyword/26939627 24]. | ||
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#Osinalde N, Sánchez-Quiles V, Blagoev B, Kratchmarova I, (2016) "Changes in Gab2 phosphorylation and interaction partners in response to interleukin (IL)-2 stimulation in T-lymphocytes." <i>Sci Rep</i> <b>6</b>:23530; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27025927 27025927]; doi: [https://dx.doi.org/10.1038/srep23530 10.1038/srep23530]; GPMDB: [http://gpmdb.org/data/keyword/27025927 22]. | #Osinalde N, Sánchez-Quiles V, Blagoev B, Kratchmarova I, (2016) "Changes in Gab2 phosphorylation and interaction partners in response to interleukin (IL)-2 stimulation in T-lymphocytes." <i>Sci Rep</i> <b>6</b>:23530; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27025927 27025927]; doi: [https://dx.doi.org/10.1038/srep23530 10.1038/srep23530]; GPMDB: [http://gpmdb.org/data/keyword/27025927 22]. | ||
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+ | #Lo Sasso G, Titz B, Nury C, Boué S, Phillips B, Belcastro V, Schneider T, Dijon S, Baumer K, Peric D, Dulize R, Elamin A, Guedj E, Buettner A, Leroy P, Kleinhans S, Vuillaume G, Veljkovic E, Ivanov NV, Martin F, Vanscheeuwijck P, Peitsch MC, Hoeng J, (2016) "Effects of cigarette smoke, cessation and switching to a candidate modified risk tobacco product on the liver in Apoe -/- mice--a systems toxicology analysis." <i>Inhal Toxicol</i> <b>28</b>(5):226–40; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27027324 27027324]; doi: [https://dx.doi.org/10.3109/08958378.2016.1150368 10.3109/08958378.2016.1150368]; GPMDB: [http://gpmdb.org/data/keyword/27027324 80]. | ||
+ | #Chen Z, Tran M, Tang M, Wang W, Gong Z, Chen J, (2016) "Proteomic Analysis Reveals a Novel Mutator S (MutS) Partner Involved in Mismatch Repair Pathway." <i>Mol Cell Proteomics</i> <b>15</b>(4):1299–308; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27037360 27037360]; doi: [https://dx.doi.org/10.1074/mcp.M115.056093 10.1074/mcp.M115.056093 ]; GPMDB: [http://gpmdb.org/data/keyword/27037360 22]. | ||
#Goldman-Pinkovich A, Balno C, Strasser R, Zeituni-Molad M, Bendelak K, Rentsch D, Ephros M, Wiese M, Jardim A, Myler PJ, Zilberstein D, (2016) "An Arginine Deprivation Response Pathway Is Induced in Leishmania during Macrophage Invasion." <i>PLoS Pathog</i> <b>12</b>(4):e1005494; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27043018 27043018]; doi: [https://dx.doi.org/10.1371/journal.ppat.1005494 10.1371/journal.ppat.1005494]; GPMDB: [http://gpmdb.org/data/keyword/27043018 8]. | #Goldman-Pinkovich A, Balno C, Strasser R, Zeituni-Molad M, Bendelak K, Rentsch D, Ephros M, Wiese M, Jardim A, Myler PJ, Zilberstein D, (2016) "An Arginine Deprivation Response Pathway Is Induced in Leishmania during Macrophage Invasion." <i>PLoS Pathog</i> <b>12</b>(4):e1005494; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27043018 27043018]; doi: [https://dx.doi.org/10.1371/journal.ppat.1005494 10.1371/journal.ppat.1005494]; GPMDB: [http://gpmdb.org/data/keyword/27043018 8]. | ||
#Salvetti A, Couté Y, Epstein A, Arata L, Kraut A, Navratil V, Bouvet P, Greco A, (2016) "Nuclear Functions of Nucleolin through Global Proteomics and Interactomic Approaches." <i>J Proteome Res</i> <b>15</b>(5):1659–69; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27049334 27049334]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00126 10.1021/acs.jproteome.6b00126]; GPMDB: [http://gpmdb.org/data/keyword/27049334 7]. | #Salvetti A, Couté Y, Epstein A, Arata L, Kraut A, Navratil V, Bouvet P, Greco A, (2016) "Nuclear Functions of Nucleolin through Global Proteomics and Interactomic Approaches." <i>J Proteome Res</i> <b>15</b>(5):1659–69; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27049334 27049334]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00126 10.1021/acs.jproteome.6b00126]; GPMDB: [http://gpmdb.org/data/keyword/27049334 7]. | ||
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#Tape CJ, Ling S, Dimitriadi M, McMahon KM, Worboys JD, Leong HS, Norrie IC, Miller CJ, Poulogiannis G, Lauffenburger DA, Jørgensen C, (2016) "Oncogenic KRAS Regulates Tumor Cell Signaling via Stromal Reciprocation." <i>Cell</i> <b>165</b>(4):910–20; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27087446 27087446]; doi: [https://dx.doi.org/10.1016/j.cell.2016.03.029 10.1016/j.cell.2016.03.029]; GPMDB: [http://gpmdb.org/data/keyword/27087446 374]. | #Tape CJ, Ling S, Dimitriadi M, McMahon KM, Worboys JD, Leong HS, Norrie IC, Miller CJ, Poulogiannis G, Lauffenburger DA, Jørgensen C, (2016) "Oncogenic KRAS Regulates Tumor Cell Signaling via Stromal Reciprocation." <i>Cell</i> <b>165</b>(4):910–20; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27087446 27087446]; doi: [https://dx.doi.org/10.1016/j.cell.2016.03.029 10.1016/j.cell.2016.03.029]; GPMDB: [http://gpmdb.org/data/keyword/27087446 374]. | ||
#Stoehr A, Yang Y, Patel S, Evangelista AM, Aponte A, Wang G, Liu P, Boylston J, Kloner PH, Lin Y, Gucek M, Zhu J, Murphy E, (2016) "Prolyl hydroxylation regulates protein degradation, synthesis, and splicing in human induced pluripotent stem cell-derived cardiomyocytes." <i>Cardiovasc Res</i> <b>110</b>(3):346–58; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27095734 27095734]; doi: [https://dx.doi.org/10.1093/cvr/cvw081 10.1093/cvr/cvw081]; GPMDB: [http://gpmdb.org/data/keyword/27095734 12]. | #Stoehr A, Yang Y, Patel S, Evangelista AM, Aponte A, Wang G, Liu P, Boylston J, Kloner PH, Lin Y, Gucek M, Zhu J, Murphy E, (2016) "Prolyl hydroxylation regulates protein degradation, synthesis, and splicing in human induced pluripotent stem cell-derived cardiomyocytes." <i>Cardiovasc Res</i> <b>110</b>(3):346–58; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27095734 27095734]; doi: [https://dx.doi.org/10.1093/cvr/cvw081 10.1093/cvr/cvw081]; GPMDB: [http://gpmdb.org/data/keyword/27095734 12]. | ||
+ | #Grassl N, Kulak NA, Pichler G, Geyer PE, Jung J, Schubert S, Sinitcyn P, Cox J, Mann M, (2016) "Ultra-deep and quantitative saliva proteome reveals dynamics of the oral microbiome." <i>Genome Med</i> <b>8</b>(1):44; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27102203 27102203]; doi: [https://dx.doi.org/10.1186/s13073-016-0293-0 10.1186/s13073-016-0293-0]; GPMDB: [http://gpmdb.org/data/keyword/27102203 89]. | ||
#Aasebø E, Mjaavatten O, Vaudel M, Farag Y, Selheim F, Berven F, Bruserud Ø, Hernandez-Valladares M, (2016) "Freezing effects on the acute myeloid leukemia cell proteome and phosphoproteome revealed using optimal quantitative workflows." <i>J Proteomics</i> <b>145</b>:214–25; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27107777 27107777]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.03.049 10.1016/j.jprot.2016.03.049]; GPMDB: [http://gpmdb.org/data/keyword/27107777 163]. | #Aasebø E, Mjaavatten O, Vaudel M, Farag Y, Selheim F, Berven F, Bruserud Ø, Hernandez-Valladares M, (2016) "Freezing effects on the acute myeloid leukemia cell proteome and phosphoproteome revealed using optimal quantitative workflows." <i>J Proteomics</i> <b>145</b>:214–25; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27107777 27107777]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.03.049 10.1016/j.jprot.2016.03.049]; GPMDB: [http://gpmdb.org/data/keyword/27107777 163]. | ||
#Larance M, Kirkwood KJ, Tinti M, Brenes Murillo A, Ferguson MA, Lamond AI, (2016) "Global Membrane Protein Interactome Analysis using In vivo Crosslinking and Mass Spectrometry-based Protein Correlation Profiling." <i>Mol Cell Proteomics</i> <b>15</b>(7):2476–90; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27114452 27114452]; doi: [https://dx.doi.org/10.1074/mcp.O115.055467 10.1074/mcp.O115.055467]; GPMDB: [http://gpmdb.org/data/keyword/27114452 396]. | #Larance M, Kirkwood KJ, Tinti M, Brenes Murillo A, Ferguson MA, Lamond AI, (2016) "Global Membrane Protein Interactome Analysis using In vivo Crosslinking and Mass Spectrometry-based Protein Correlation Profiling." <i>Mol Cell Proteomics</i> <b>15</b>(7):2476–90; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27114452 27114452]; doi: [https://dx.doi.org/10.1074/mcp.O115.055467 10.1074/mcp.O115.055467]; GPMDB: [http://gpmdb.org/data/keyword/27114452 396]. | ||
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#Ono M, Yamada K, Bensaddek D, Afzal V, Biddlestone J, Ortmann B, Mudie S, Boivin V, Scott MS, Rocha S, Lamond AI, (2016) "Enhanced snoMEN Vectors Facilitate Establishment of GFP-HIF-1α Protein Replacement Human Cell Lines." <i>PLoS One</i> <b>11</b>(4):e0154759; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27128805 27128805]; doi: [https://dx.doi.org/10.1371/journal.pone.0154759 10.1371/journal.pone.0154759]; GPMDB: [http://gpmdb.org/data/keyword/27128805 72]. | #Ono M, Yamada K, Bensaddek D, Afzal V, Biddlestone J, Ortmann B, Mudie S, Boivin V, Scott MS, Rocha S, Lamond AI, (2016) "Enhanced snoMEN Vectors Facilitate Establishment of GFP-HIF-1α Protein Replacement Human Cell Lines." <i>PLoS One</i> <b>11</b>(4):e0154759; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27128805 27128805]; doi: [https://dx.doi.org/10.1371/journal.pone.0154759 10.1371/journal.pone.0154759]; GPMDB: [http://gpmdb.org/data/keyword/27128805 72]. | ||
#Petrone A, Adamo ME, Cheng C, Kettenbach AN, (2016) "Identification of Candidate Cyclin-dependent kinase 1 (Cdk1) Substrates in Mitosis by Quantitative Phosphoproteomics." <i>Mol Cell Proteomics</i> <b>15</b>(7):2448–61; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27134283 27134283]; doi: [https://dx.doi.org/10.1074/mcp.M116.059394 10.1074/mcp.M116.059394]; GPMDB: [http://gpmdb.org/data/keyword/27134283 90]. | #Petrone A, Adamo ME, Cheng C, Kettenbach AN, (2016) "Identification of Candidate Cyclin-dependent kinase 1 (Cdk1) Substrates in Mitosis by Quantitative Phosphoproteomics." <i>Mol Cell Proteomics</i> <b>15</b>(7):2448–61; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27134283 27134283]; doi: [https://dx.doi.org/10.1074/mcp.M116.059394 10.1074/mcp.M116.059394]; GPMDB: [http://gpmdb.org/data/keyword/27134283 90]. | ||
+ | #Pozniak Y, Balint-Lahat N, Rudolph JD, Lindskog C, Katzir R, Avivi C, Pontén F, Ruppin E, Barshack I, Geiger T, (2016) "System-wide Clinical Proteomics of Breast Cancer Reveals Global Remodeling of Tissue Homeostasis." <i>Cell Syst</i> <b>2</b>(3):172–84; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27135363 27135363]; doi: [https://dx.doi.org/10.1016/j.cels.2016.02.001 10.1016/j.cels.2016.02.001]; GPMDB: [http://gpmdb.org/data/keyword/27135363 126]. | ||
#Ori A, Toyama BH, Harris MS, Bock T, Iskar M, Bork P, Ingolia NT, Hetzer MW, Beck M, (2015) "Integrated Transcriptome and Proteome Analyses Reveal Organ-Specific Proteome Deterioration in Old Rats." <i>Cell Syst</i> <b>1</b>(3):224–37; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27135913 27135913]; doi: [https://dx.doi.org/10.1016/j.cels.2015.08.012 10.1016/j.cels.2015.08.012]; GPMDB: [http://gpmdb.org/data/keyword/27135913 190]. | #Ori A, Toyama BH, Harris MS, Bock T, Iskar M, Bork P, Ingolia NT, Hetzer MW, Beck M, (2015) "Integrated Transcriptome and Proteome Analyses Reveal Organ-Specific Proteome Deterioration in Old Rats." <i>Cell Syst</i> <b>1</b>(3):224–37; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27135913 27135913]; doi: [https://dx.doi.org/10.1016/j.cels.2015.08.012 10.1016/j.cels.2015.08.012]; GPMDB: [http://gpmdb.org/data/keyword/27135913 190]. | ||
#Francavilla C, Papetti M, Rigbolt KT, Pedersen AK, Sigurdsson JO, Cazzamali G, Karemore G, Blagoev B, Olsen JV, (2016) "Multilayered proteomics reveals molecular switches dictating ligand-dependent EGFR trafficking." <i>Nat Struct Mol Biol</i> <b>23</b>(6):608–18; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27136326 27136326]; doi: [https://dx.doi.org/10.1038/nsmb.3218 10.1038/nsmb.3218]; GPMDB: [http://gpmdb.org/data/keyword/27136326 19]. | #Francavilla C, Papetti M, Rigbolt KT, Pedersen AK, Sigurdsson JO, Cazzamali G, Karemore G, Blagoev B, Olsen JV, (2016) "Multilayered proteomics reveals molecular switches dictating ligand-dependent EGFR trafficking." <i>Nat Struct Mol Biol</i> <b>23</b>(6):608–18; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27136326 27136326]; doi: [https://dx.doi.org/10.1038/nsmb.3218 10.1038/nsmb.3218]; GPMDB: [http://gpmdb.org/data/keyword/27136326 19]. | ||
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#Kempf SJ, Metaxas A, Ibáñez-Vea M, Darvesh S, Finsen B, Larsen MR, (2016) "An integrated proteomics approach shows synaptic plasticity changes in an APP/PS1 Alzheimer's mouse model." <i>Oncotarget</i> <b>7</b>(23):33627–48; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27144524 27144524]; doi: [https://dx.doi.org/10.18632/oncotarget.9092 10.18632/oncotarget.9092]; GPMDB: [http://gpmdb.org/data/keyword/27144524 104]. | #Kempf SJ, Metaxas A, Ibáñez-Vea M, Darvesh S, Finsen B, Larsen MR, (2016) "An integrated proteomics approach shows synaptic plasticity changes in an APP/PS1 Alzheimer's mouse model." <i>Oncotarget</i> <b>7</b>(23):33627–48; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27144524 27144524]; doi: [https://dx.doi.org/10.18632/oncotarget.9092 10.18632/oncotarget.9092]; GPMDB: [http://gpmdb.org/data/keyword/27144524 104]. | ||
#Dørum S, Steinsbø Ø, Bergseng E, Arntzen MØ, de Souza GA, Sollid LM, (2016) "Gluten-specific antibodies of celiac disease gut plasma cells recognize long proteolytic fragments that typically harbor T-cell epitopes." <i>Sci Rep</i> <b>6</b>:25565; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27146306 27146306]; doi: [https://dx.doi.org/10.1038/srep25565 10.1038/srep25565]; GPMDB: [http://gpmdb.org/data/keyword/27146306 27]. | #Dørum S, Steinsbø Ø, Bergseng E, Arntzen MØ, de Souza GA, Sollid LM, (2016) "Gluten-specific antibodies of celiac disease gut plasma cells recognize long proteolytic fragments that typically harbor T-cell epitopes." <i>Sci Rep</i> <b>6</b>:25565; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27146306 27146306]; doi: [https://dx.doi.org/10.1038/srep25565 10.1038/srep25565]; GPMDB: [http://gpmdb.org/data/keyword/27146306 27]. | ||
+ | #Chen R, Zou H, Figeys D, (2016) "Detergent-Assisted Glycoprotein Capture: A Versatile Tool for In-Depth N-Glycoproteome Analysis." <i>J Proteome Res</i> <b>15</b>(6):2080–6; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27147131 27147131]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00056 10.1021/acs.jproteome.6b00056]; GPMDB: [http://gpmdb.org/data/keyword/27147131 36]. | ||
#Packialakshmi B, Liyanage R, Lay JO Jr, Okimoto R, Rath NC, (2016) "Proteomic Changes in the Plasma of Broiler Chickens with Femoral Head Necrosis." <i>Biomark Insights</i> <b>11</b>:55–62; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27147818 27147818]; doi: [https://dx.doi.org/10.4137/BMI.S38291 10.4137/BMI.S38291]; GPMDB: [http://gpmdb.org/data/keyword/27147818 6]. | #Packialakshmi B, Liyanage R, Lay JO Jr, Okimoto R, Rath NC, (2016) "Proteomic Changes in the Plasma of Broiler Chickens with Femoral Head Necrosis." <i>Biomark Insights</i> <b>11</b>:55–62; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27147818 27147818]; doi: [https://dx.doi.org/10.4137/BMI.S38291 10.4137/BMI.S38291]; GPMDB: [http://gpmdb.org/data/keyword/27147818 6]. | ||
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#Rao SR, Flores-Rodriguez N, Page SL, Wong C, Robinson PJ, Chircop M, (2016) "The Clathrin-dependent Spindle Proteome." <i>Mol Cell Proteomics</i> <b>15</b>(8):2537–53; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27174698 27174698]; doi: [https://dx.doi.org/10.1074/mcp.M115.054809 10.1074/mcp.M115.054809]; GPMDB: [http://gpmdb.org/data/keyword/27174698 130]. | #Rao SR, Flores-Rodriguez N, Page SL, Wong C, Robinson PJ, Chircop M, (2016) "The Clathrin-dependent Spindle Proteome." <i>Mol Cell Proteomics</i> <b>15</b>(8):2537–53; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27174698 27174698]; doi: [https://dx.doi.org/10.1074/mcp.M115.054809 10.1074/mcp.M115.054809]; GPMDB: [http://gpmdb.org/data/keyword/27174698 130]. | ||
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#Mertins P, Mani DR, Ruggles KV, Gillette MA, Clauser KR, Wang P, Wang X, Qiao JW, Cao S, Petralia F, Kawaler E, Mundt F, Krug K, Tu Z, Lei JT, Gatza ML, Wilkerson M, Perou CM, Yellapantula V, Huang KL, Lin C, McLellan MD, Yan P, Davies SR, Townsend RR, Skates SJ, Wang J, Zhang B, Kinsinger CR, Mesri M, Rodriguez H, Ding L, Paulovich AG, Fenyö D, Ellis MJ, Carr SA, NCI CPTAC., (2016) "Proteogenomics connects somatic mutations to signalling in breast cancer." <i>Nature</i> <b>534</b>(7605):55–62; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27251275 27251275]; doi: [https://dx.doi.org/10.1038/nature18003 10.1038/nature18003]; GPMDB: [http://gpmdb.org/data/keyword/27251275 1265]. | #Mertins P, Mani DR, Ruggles KV, Gillette MA, Clauser KR, Wang P, Wang X, Qiao JW, Cao S, Petralia F, Kawaler E, Mundt F, Krug K, Tu Z, Lei JT, Gatza ML, Wilkerson M, Perou CM, Yellapantula V, Huang KL, Lin C, McLellan MD, Yan P, Davies SR, Townsend RR, Skates SJ, Wang J, Zhang B, Kinsinger CR, Mesri M, Rodriguez H, Ding L, Paulovich AG, Fenyö D, Ellis MJ, Carr SA, NCI CPTAC., (2016) "Proteogenomics connects somatic mutations to signalling in breast cancer." <i>Nature</i> <b>534</b>(7605):55–62; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27251275 27251275]; doi: [https://dx.doi.org/10.1038/nature18003 10.1038/nature18003]; GPMDB: [http://gpmdb.org/data/keyword/27251275 1265]. | ||
#Humphrey ES, Su SP, Nagrial AM, Hochgräfe F, Pajic M, Lehrbach GM, Parton RG, Yap AS, Horvath LG, Chang DK, Biankin AV, Wu J, Daly RJ, (2016) "Resolution of Novel Pancreatic Ductal Adenocarcinoma Subtypes by Global Phosphotyrosine Profiling." <i>Mol Cell Proteomics</i> <b>15</b>(8):2671–85; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27259358 27259358]; doi: [https://dx.doi.org/10.1074/mcp.M116.058313 10.1074/mcp.M116.058313]; GPMDB: [http://gpmdb.org/data/keyword/27259358 112]. | #Humphrey ES, Su SP, Nagrial AM, Hochgräfe F, Pajic M, Lehrbach GM, Parton RG, Yap AS, Horvath LG, Chang DK, Biankin AV, Wu J, Daly RJ, (2016) "Resolution of Novel Pancreatic Ductal Adenocarcinoma Subtypes by Global Phosphotyrosine Profiling." <i>Mol Cell Proteomics</i> <b>15</b>(8):2671–85; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27259358 27259358]; doi: [https://dx.doi.org/10.1074/mcp.M116.058313 10.1074/mcp.M116.058313]; GPMDB: [http://gpmdb.org/data/keyword/27259358 112]. | ||
+ | #Hintermair C, Voß K, Forné I, Heidemann M, Flatley A, Kremmer E, Imhof A, Eick D, (2016) "Specific threonine-4 phosphorylation and function of RNA polymerase II CTD during M phase progression." <i>Sci Rep</i> <b>6</b>:27401; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27264542 27264542]; doi: [https://dx.doi.org/10.1038/srep27401 10.1038/srep27401]; GPMDB: [http://gpmdb.org/data/keyword/27264542 63]. | ||
#Xu L, Gao Y, Chen Y, Xiao Y, He Q, Qiu H, Ge W, (2016) "Quantitative proteomics reveals that distant recurrence-associated protein R-Ras and Transgelin predict post-surgical survival in patients with Stage III colorectal cancer." <i>Oncotarget</i> <b>7</b>(28):43868–43893; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27270312 27270312]; doi: [https://dx.doi.org/10.18632/oncotarget.9701 10.18632/oncotarget.9701]; GPMDB: [http://gpmdb.org/data/keyword/27270312 2]. | #Xu L, Gao Y, Chen Y, Xiao Y, He Q, Qiu H, Ge W, (2016) "Quantitative proteomics reveals that distant recurrence-associated protein R-Ras and Transgelin predict post-surgical survival in patients with Stage III colorectal cancer." <i>Oncotarget</i> <b>7</b>(28):43868–43893; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27270312 27270312]; doi: [https://dx.doi.org/10.18632/oncotarget.9701 10.18632/oncotarget.9701]; GPMDB: [http://gpmdb.org/data/keyword/27270312 2]. | ||
#Gnad F, Doll S, Song K, Stokes MP, Moffat J, Liu B, Arnott D, Wallin J, Friedman LS, Hatzivassiliou G, Belvin M, (2016) "Phosphoproteome analysis of the MAPK pathway reveals previously undetected feedback mechanisms." <i>Proteomics</i> <b>16</b>(14):1998–2004; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27273156 27273156]; doi: [https://dx.doi.org/10.1002/pmic.201600119 10.1002/pmic.201600119]; GPMDB: [http://gpmdb.org/data/keyword/27273156 56]. | #Gnad F, Doll S, Song K, Stokes MP, Moffat J, Liu B, Arnott D, Wallin J, Friedman LS, Hatzivassiliou G, Belvin M, (2016) "Phosphoproteome analysis of the MAPK pathway reveals previously undetected feedback mechanisms." <i>Proteomics</i> <b>16</b>(14):1998–2004; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27273156 27273156]; doi: [https://dx.doi.org/10.1002/pmic.201600119 10.1002/pmic.201600119]; GPMDB: [http://gpmdb.org/data/keyword/27273156 56]. | ||
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#Ahrné E, Glatter T, Viganò C, Schubert Cv, Nigg EA, Schmidt A, (2016) "Evaluation and Improvement of Quantification Accuracy in Isobaric Mass Tag-Based Protein Quantification Experiments." <i>J Proteome Res</i> <b>15</b>(8):2537–47; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27345528 27345528]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00066 10.1021/acs.jproteome.6b00066]; GPMDB: [http://gpmdb.org/data/keyword/27345528 41]. | #Ahrné E, Glatter T, Viganò C, Schubert Cv, Nigg EA, Schmidt A, (2016) "Evaluation and Improvement of Quantification Accuracy in Isobaric Mass Tag-Based Protein Quantification Experiments." <i>J Proteome Res</i> <b>15</b>(8):2537–47; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27345528 27345528]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00066 10.1021/acs.jproteome.6b00066]; GPMDB: [http://gpmdb.org/data/keyword/27345528 41]. | ||
#Chaubey PM, Hofstetter L, Roschitzki B, Stieger B, (2016) "Proteomic Analysis of the Rat Canalicular Membrane Reveals Expression of a Complex System of P4-ATPases in Liver." <i>PLoS One</i> <b>11</b>(6):e0158033; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27347675 27347675]; doi: [https://dx.doi.org/10.1371/journal.pone.0158033 10.1371/journal.pone.0158033]; GPMDB: [http://gpmdb.org/data/keyword/27347675 60]. | #Chaubey PM, Hofstetter L, Roschitzki B, Stieger B, (2016) "Proteomic Analysis of the Rat Canalicular Membrane Reveals Expression of a Complex System of P4-ATPases in Liver." <i>PLoS One</i> <b>11</b>(6):e0158033; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27347675 27347675]; doi: [https://dx.doi.org/10.1371/journal.pone.0158033 10.1371/journal.pone.0158033]; GPMDB: [http://gpmdb.org/data/keyword/27347675 60]. | ||
+ | #Bespyatykh J, Shitikov E, Butenko I, Altukhov I, Alexeev D, Mokrousov I, Dogonadze M, Zhuravlev V, Yablonsky P, Ilina E, Govorun V, (2016) "Proteome analysis of the Mycobacterium tuberculosis Beijing B0/W148 cluster." <i>Sci Rep</i> <b>6</b>:28985; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27356881 27356881]; doi: [https://dx.doi.org/10.1038/srep28985 10.1038/srep28985]; GPMDB: [http://gpmdb.org/data/keyword/27356881 23]. | ||
+ | #Monks J, Dzieciatkowska M, Bales ES, Orlicky DJ, Wright RM, McManaman JL, (2016) "Xanthine oxidoreductase mediates membrane docking of milk-fat droplets but is not essential for apocrine lipid secretion." <i>J Physiol</i> <b>594</b>(20):5899–5921; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27357166 27357166]; doi: [https://dx.doi.org/10.1113/JP272390 10.1113/JP272390]; GPMDB: [http://gpmdb.org/data/keyword/27357166 16]. | ||
#Rinschen MM, Schroeter CB, Koehler S, Ising C, Schermer B, Kann M, Benzing T, Brinkkoetter PT, (2016) "Quantitative deep mapping of the cultured podocyte proteome uncovers shifts in proteostatic mechanisms during differentiation." <i>Am J Physiol Cell Physiol</i> <b>311</b>(3):C404–17; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27357545 27357545]; doi: [https://dx.doi.org/10.1152/ajpcell.00121.2016 10.1152/ajpcell.00121.2016]; GPMDB: [http://gpmdb.org/data/keyword/27357545 3]. | #Rinschen MM, Schroeter CB, Koehler S, Ising C, Schermer B, Kann M, Benzing T, Brinkkoetter PT, (2016) "Quantitative deep mapping of the cultured podocyte proteome uncovers shifts in proteostatic mechanisms during differentiation." <i>Am J Physiol Cell Physiol</i> <b>311</b>(3):C404–17; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27357545 27357545]; doi: [https://dx.doi.org/10.1152/ajpcell.00121.2016 10.1152/ajpcell.00121.2016]; GPMDB: [http://gpmdb.org/data/keyword/27357545 3]. | ||
#Dudekula K, Le Bihan T, (2016) "Data from quantitative label free proteomics analysis of rat spleen." <i>Data Brief</i> <b>8</b>:494–500; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27358910 27358910]; doi: [https://dx.doi.org/10.1016/j.dib.2016.05.058 10.1016/j.dib.2016.05.058]; GPMDB: [http://gpmdb.org/data/keyword/27358910 17]. | #Dudekula K, Le Bihan T, (2016) "Data from quantitative label free proteomics analysis of rat spleen." <i>Data Brief</i> <b>8</b>:494–500; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27358910 27358910]; doi: [https://dx.doi.org/10.1016/j.dib.2016.05.058 10.1016/j.dib.2016.05.058]; GPMDB: [http://gpmdb.org/data/keyword/27358910 17]. | ||
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#Shraibman B, Kadosh DM, Barnea E, Admon A, (2016) "Human Leukocyte Antigen (HLA) Peptides Derived from Tumor Antigens Induced by Inhibition of DNA Methylation for Development of Drug-facilitated Immunotherapy." <i>Mol Cell Proteomics</i> <b>15</b>(9):3058–70; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27412690 27412690]; doi: [https://dx.doi.org/10.1074/mcp.M116.060350 10.1074/mcp.M116.060350]; GPMDB: [http://gpmdb.org/data/keyword/27412690 60]. | #Shraibman B, Kadosh DM, Barnea E, Admon A, (2016) "Human Leukocyte Antigen (HLA) Peptides Derived from Tumor Antigens Induced by Inhibition of DNA Methylation for Development of Drug-facilitated Immunotherapy." <i>Mol Cell Proteomics</i> <b>15</b>(9):3058–70; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27412690 27412690]; doi: [https://dx.doi.org/10.1074/mcp.M116.060350 10.1074/mcp.M116.060350]; GPMDB: [http://gpmdb.org/data/keyword/27412690 60]. | ||
#Müller S, Balaz M, Stefanicka P, Varga L, Amri EZ, Ukropec J, Wollscheid B, Wolfrum C, (2016) "Proteomic Analysis of Human Brown Adipose Tissue Reveals Utilization of Coupled and Uncoupled Energy Expenditure Pathways." <i>Sci Rep</i> <b>6</b>:30030; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27418403 27418403]; doi: [https://dx.doi.org/10.1038/srep30030 10.1038/srep30030]; GPMDB: [http://gpmdb.org/data/keyword/27418403 32]. | #Müller S, Balaz M, Stefanicka P, Varga L, Amri EZ, Ukropec J, Wollscheid B, Wolfrum C, (2016) "Proteomic Analysis of Human Brown Adipose Tissue Reveals Utilization of Coupled and Uncoupled Energy Expenditure Pathways." <i>Sci Rep</i> <b>6</b>:30030; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27418403 27418403]; doi: [https://dx.doi.org/10.1038/srep30030 10.1038/srep30030]; GPMDB: [http://gpmdb.org/data/keyword/27418403 32]. | ||
+ | #Rice RH, Durbin-Johnson BP, Ishitsuka Y, Salemi M, Phinney BS, Rocke DM, Roop DR, (2016) "Proteomic Analysis of Loricrin Knockout Mouse Epidermis." <i>J Proteome Res</i> <b>15</b>(8):2560–6; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27418529 27418529]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00108 10.1021/acs.jproteome.6b00108]; GPMDB: [http://gpmdb.org/data/keyword/27418529 42]. | ||
+ | #Wojtowicz EE, Lechman ER, Hermans KG, Schoof EM, Wienholds E, Isserlin R, van Veelen PA, Broekhuis MJ, Janssen GM, Trotman-Grant A, Dobson SM, Krivdova G, Elzinga J, Kennedy J, Gan OI, Sinha A, Ignatchenko V, Kislinger T, Dethmers-Ausema B, Weersing E, Alemdehy MF, de Looper HW, Bader GD, Ritsema M, Erkeland SJ, Bystrykh LV, Dick JE, de Haan G, (2016) "Ectopic miR-125a Expression Induces Long-Term Repopulating Stem Cell Capacity in Mouse and Human Hematopoietic Progenitors." <i>Cell Stem Cell</i> <b>19</b>(3):383–96; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27424784 27424784]; doi: [https://dx.doi.org/10.1016/j.stem.2016.06.008 10.1016/j.stem.2016.06.008]; GPMDB: [http://gpmdb.org/data/keyword/27424784 36]. | ||
#Petrera A, Kern U, Linz D, Gomez-Auli A, Hohl M, Gassenhuber J, Sadowski T, Schilling O, (2016) "Proteomic Profiling of Cardiomyocyte-Specific Cathepsin A Overexpression Links Cathepsin A to the Oxidative Stress Response." <i>J Proteome Res</i> <b>15</b>(9):3188–95; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27432266 27432266]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00413 10.1021/acs.jproteome.6b00413]; GPMDB: [http://gpmdb.org/data/keyword/27432266 3]. | #Petrera A, Kern U, Linz D, Gomez-Auli A, Hohl M, Gassenhuber J, Sadowski T, Schilling O, (2016) "Proteomic Profiling of Cardiomyocyte-Specific Cathepsin A Overexpression Links Cathepsin A to the Oxidative Stress Response." <i>J Proteome Res</i> <b>15</b>(9):3188–95; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27432266 27432266]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00413 10.1021/acs.jproteome.6b00413]; GPMDB: [http://gpmdb.org/data/keyword/27432266 3]. | ||
#Zhou Y, Xiong L, Zhang Y, Yu R, Jiang X, Xu G, (2016) "Quantitative proteomics identifies myoferlin as a novel regulator of A Disintegrin and Metalloproteinase 12 in HeLa cells." <i>J Proteomics</i> <b>148</b>:94–104; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27432471 27432471]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.07.015 10.1016/j.jprot.2016.07.015]; GPMDB: [http://gpmdb.org/data/keyword/27432471 14]. | #Zhou Y, Xiong L, Zhang Y, Yu R, Jiang X, Xu G, (2016) "Quantitative proteomics identifies myoferlin as a novel regulator of A Disintegrin and Metalloproteinase 12 in HeLa cells." <i>J Proteomics</i> <b>148</b>:94–104; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27432471 27432471]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.07.015 10.1016/j.jprot.2016.07.015]; GPMDB: [http://gpmdb.org/data/keyword/27432471 14]. | ||
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#Osinalde N, Sanchez-Quiles V, Akimov V, Aloria K, Arizmendi JM, Blagoev B, Kratchmarova I, (2016) "Characterization of Receptor-Associated Protein Complex Assembly in Interleukin (IL)-2- and IL-15-Activated T-Cell Lines." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27463037 27463037]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00233 10.1021/acs.jproteome.6b00233]; GPMDB: [http://gpmdb.org/data/keyword/27463037 55]. | #Osinalde N, Sanchez-Quiles V, Akimov V, Aloria K, Arizmendi JM, Blagoev B, Kratchmarova I, (2016) "Characterization of Receptor-Associated Protein Complex Assembly in Interleukin (IL)-2- and IL-15-Activated T-Cell Lines." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27463037 27463037]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00233 10.1021/acs.jproteome.6b00233]; GPMDB: [http://gpmdb.org/data/keyword/27463037 55]. | ||
#Liu Z, Wang F, Chen J, Zhou Y, Zou H, (2016) "Modulating the selectivity of affinity absorbents to multi-phosphopeptides by a competitive substitution strategy." <i>J Chromatogr A</i> <b>1461</b>:35–41; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27470094 27470094]; doi: [https://dx.doi.org/10.1016/j.chroma.2016.07.042 10.1016/j.chroma.2016.07.042]; GPMDB: [http://gpmdb.org/data/keyword/27470094 9]. | #Liu Z, Wang F, Chen J, Zhou Y, Zou H, (2016) "Modulating the selectivity of affinity absorbents to multi-phosphopeptides by a competitive substitution strategy." <i>J Chromatogr A</i> <b>1461</b>:35–41; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27470094 27470094]; doi: [https://dx.doi.org/10.1016/j.chroma.2016.07.042 10.1016/j.chroma.2016.07.042]; GPMDB: [http://gpmdb.org/data/keyword/27470094 9]. | ||
+ | #Voisinne G, García-Blesa A, Chaoui K, Fiore F, Bergot E, Girard L, Malissen M, Burlet-Schiltz O, Gonzalez de Peredo A, Malissen B, Roncagalli R, (2016) "Co-recruitment analysis of the CBL and CBLB signalosomes in primary T cells identifies CD5 as a key regulator of TCR-induced ubiquitylation." <i>Mol Syst Biol</i> <b>12</b>(7):876; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27474268 27474268]; GPMDB: [http://gpmdb.org/data/keyword/27474268 178]. | ||
#Uyy E, Suica VI, Boteanu RM, Manda D, Baciu AE, Badiu C, Antohe F, (2016) "Endoplasmic Reticulum Chaperones Are Potential Active Factors in Thyroid Tumorigenesis." <i>J Proteome Res</i> <b>15</b>(9):3377–87; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27480176 27480176]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00567 10.1021/acs.jproteome.6b00567]; GPMDB: [http://gpmdb.org/data/keyword/27480176 100]. | #Uyy E, Suica VI, Boteanu RM, Manda D, Baciu AE, Badiu C, Antohe F, (2016) "Endoplasmic Reticulum Chaperones Are Potential Active Factors in Thyroid Tumorigenesis." <i>J Proteome Res</i> <b>15</b>(9):3377–87; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27480176 27480176]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00567 10.1021/acs.jproteome.6b00567]; GPMDB: [http://gpmdb.org/data/keyword/27480176 100]. | ||
#Söderholm S, Kainov DE, Öhman T, Denisova OV, Schepens B, Kulesskiy E, Imanishi SY, Corthals G, Hintsanen P, Aittokallio T, Saelens X, Matikainen S, Nyman TA, (2016) "Phosphoproteomics to Characterize Host Response During Influenza A Virus Infection of Human Macrophages." <i>Mol Cell Proteomics</i> <b>15</b>(10):3203–3219; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27486199 27486199]; doi: [https://dx.doi.org/10.1074/mcp.M116.057984 10.1074/mcp.M116.057984]; GPMDB: [http://gpmdb.org/data/keyword/27486199 20]. | #Söderholm S, Kainov DE, Öhman T, Denisova OV, Schepens B, Kulesskiy E, Imanishi SY, Corthals G, Hintsanen P, Aittokallio T, Saelens X, Matikainen S, Nyman TA, (2016) "Phosphoproteomics to Characterize Host Response During Influenza A Virus Infection of Human Macrophages." <i>Mol Cell Proteomics</i> <b>15</b>(10):3203–3219; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27486199 27486199]; doi: [https://dx.doi.org/10.1074/mcp.M116.057984 10.1074/mcp.M116.057984]; GPMDB: [http://gpmdb.org/data/keyword/27486199 20]. | ||
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#Marino F, Mommen GP, Jeko A, Meiring HD, van Gaans-van den Brink JA, Scheltema RA, van Els CA, Heck AJ, (2016) "Arginine (Di)methylated Human Leukocyte Antigen Class I Peptides Are Favorably Presented by HLA-B*07." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27503676 27503676]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00528 10.1021/acs.jproteome.6b00528]; GPMDB: [http://gpmdb.org/data/keyword/27503676 31]. | #Marino F, Mommen GP, Jeko A, Meiring HD, van Gaans-van den Brink JA, Scheltema RA, van Els CA, Heck AJ, (2016) "Arginine (Di)methylated Human Leukocyte Antigen Class I Peptides Are Favorably Presented by HLA-B*07." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27503676 27503676]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00528 10.1021/acs.jproteome.6b00528]; GPMDB: [http://gpmdb.org/data/keyword/27503676 31]. | ||
#Budayeva HG, Cristea IM, (2016) "Human Sirtuin 2 Localization, Transient Interactions, and Impact on the Proteome Point to Its Role in Intracellular Trafficking." <i>Mol Cell Proteomics</i> <b>15</b>(10):3107–3125; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27503897 27503897]; doi: [https://dx.doi.org/10.1074/mcp.M116.061333 10.1074/mcp.M116.061333]; GPMDB: [http://gpmdb.org/data/keyword/27503897 15]. | #Budayeva HG, Cristea IM, (2016) "Human Sirtuin 2 Localization, Transient Interactions, and Impact on the Proteome Point to Its Role in Intracellular Trafficking." <i>Mol Cell Proteomics</i> <b>15</b>(10):3107–3125; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27503897 27503897]; doi: [https://dx.doi.org/10.1074/mcp.M116.061333 10.1074/mcp.M116.061333]; GPMDB: [http://gpmdb.org/data/keyword/27503897 15]. | ||
+ | #Gat-Yablonski G, Finka A, Pinto G, Quadroni M, Shtaif B, Goloubinoff P, (2016) "Quantitative proteomics of rat livers shows that unrestricted feeding is stressful for proteostasis with implications on life span." <i>Aging (Albany NY)</i> <b>8</b>(8):1735–58; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27508340 27508340]; doi: [https://dx.doi.org/10.18632/aging.101009 10.18632/aging.101009]; GPMDB: [http://gpmdb.org/data/keyword/27508340 18]. | ||
#Swenson JM, Colmenares SU, Strom AR, Costes SV, Karpen GH, (2016) "The composition and organization of Drosophila heterochromatin are heterogeneous and dynamic." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27514026 27514026]; doi: [https://dx.doi.org/10.7554/eLife.16096 10.7554/eLife.16096]; GPMDB: [http://gpmdb.org/data/keyword/27514026 4]. | #Swenson JM, Colmenares SU, Strom AR, Costes SV, Karpen GH, (2016) "The composition and organization of Drosophila heterochromatin are heterogeneous and dynamic." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27514026 27514026]; doi: [https://dx.doi.org/10.7554/eLife.16096 10.7554/eLife.16096]; GPMDB: [http://gpmdb.org/data/keyword/27514026 4]. | ||
#Naboulsi W, Bracht T, Megger DA, Reis H, Ahrens M, Turewicz M, Eisenacher M, Tautges S, Canbay AE, Meyer HE, Weber F, Baba HA, Sitek B, (2016) "Quantitative proteome analysis reveals the correlation between endocytosis-associated proteins and hepatocellular carcinoma dedifferentiation." <i>Biochim Biophys Acta</i> <b>1864</b>(11):1579–85; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27519163 27519163]; doi: [https://dx.doi.org/10.1016/j.bbapap.2016.08.005 10.1016/j.bbapap.2016.08.005]; GPMDB: [http://gpmdb.org/data/keyword/27519163 36]. | #Naboulsi W, Bracht T, Megger DA, Reis H, Ahrens M, Turewicz M, Eisenacher M, Tautges S, Canbay AE, Meyer HE, Weber F, Baba HA, Sitek B, (2016) "Quantitative proteome analysis reveals the correlation between endocytosis-associated proteins and hepatocellular carcinoma dedifferentiation." <i>Biochim Biophys Acta</i> <b>1864</b>(11):1579–85; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27519163 27519163]; doi: [https://dx.doi.org/10.1016/j.bbapap.2016.08.005 10.1016/j.bbapap.2016.08.005]; GPMDB: [http://gpmdb.org/data/keyword/27519163 36]. | ||
#Rasmussen MH, Lyskjær I, Jersie-Christensen RR, Tarpgaard LS, Primdal-Bengtson B, Nielsen MM, Pedersen JS, Hansen TP, Hansen F, Olsen JV, Pfeiffer P, Ørntoft TF, Andersen CL, (2016) "miR-625-3p regulates oxaliplatin resistance by targeting MAP2K6-p38 signalling in human colorectal adenocarcinoma cells." <i>Nat Commun</i> <b>7</b>:12436; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27526785 27526785]; doi: [https://dx.doi.org/10.1038/ncomms12436 10.1038/ncomms12436]; GPMDB: [http://gpmdb.org/data/keyword/27526785 24]. | #Rasmussen MH, Lyskjær I, Jersie-Christensen RR, Tarpgaard LS, Primdal-Bengtson B, Nielsen MM, Pedersen JS, Hansen TP, Hansen F, Olsen JV, Pfeiffer P, Ørntoft TF, Andersen CL, (2016) "miR-625-3p regulates oxaliplatin resistance by targeting MAP2K6-p38 signalling in human colorectal adenocarcinoma cells." <i>Nat Commun</i> <b>7</b>:12436; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27526785 27526785]; doi: [https://dx.doi.org/10.1038/ncomms12436 10.1038/ncomms12436]; GPMDB: [http://gpmdb.org/data/keyword/27526785 24]. | ||
+ | #Chatterjee S, Stupp GS, Park SK, Ducom JC, Yates JR 3rd, Su AI, Wolan DW, (2016) "A comprehensive and scalable database search system for metaproteomics." <i>BMC Genomics</i> <b>17</b>(1):642; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27528457 27528457]; doi: [https://dx.doi.org/10.1186/s12864-016-2855-3 10.1186/s12864-016-2855-3]; GPMDB: [http://gpmdb.org/data/keyword/27528457 28]. | ||
#Liu L, Phua YW, Lee RS, Ma X, Jenkins Y, Novy K, Humphrey ES, Chan H, Shearer R, Ong PC, Dai W, Saunders DN, Lucet IS, Daly RJ, (2016) "Homo- and Heterotypic Association Regulates Signaling by the SgK269/PEAK1 and SgK223 Pseudokinases." <i>J Biol Chem</i> <b>291</b>(41):21571–21583; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27531744 27531744]; doi: [https://dx.doi.org/10.1074/jbc.M116.748897 10.1074/jbc.M116.748897]; GPMDB: [http://gpmdb.org/data/keyword/27531744 6]. | #Liu L, Phua YW, Lee RS, Ma X, Jenkins Y, Novy K, Humphrey ES, Chan H, Shearer R, Ong PC, Dai W, Saunders DN, Lucet IS, Daly RJ, (2016) "Homo- and Heterotypic Association Regulates Signaling by the SgK269/PEAK1 and SgK223 Pseudokinases." <i>J Biol Chem</i> <b>291</b>(41):21571–21583; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27531744 27531744]; doi: [https://dx.doi.org/10.1074/jbc.M116.748897 10.1074/jbc.M116.748897]; GPMDB: [http://gpmdb.org/data/keyword/27531744 6]. | ||
#Mattei B, Spinelli F, Pontiggia D, De Lorenzo G, (2016) "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana." <i>Front Plant Sci</i> <b>7</b>:1107; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27532006 27532006]; doi: [https://dx.doi.org/10.3389/fpls.2016.01107 10.3389/fpls.2016.01107]; GPMDB: [http://gpmdb.org/data/keyword/27532006 12]. | #Mattei B, Spinelli F, Pontiggia D, De Lorenzo G, (2016) "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana." <i>Front Plant Sci</i> <b>7</b>:1107; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27532006 27532006]; doi: [https://dx.doi.org/10.3389/fpls.2016.01107 10.3389/fpls.2016.01107]; GPMDB: [http://gpmdb.org/data/keyword/27532006 12]. | ||
#Solari FA, Mattheij NJ, Burkhart JM, Swieringa F, Collins PW, Cosemans JM, Sickmann A, Heemskerk JW, Zahedi RP, (2016) "Combined Quantification of the Global Proteome, Phosphoproteome, and Proteolytic Cleavage to Characterize Altered Platelet Functions in the Human Scott Syndrome." <i>Mol Cell Proteomics</i> <b>15</b>(10):3154–3169; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27535140 27535140]; doi: [https://dx.doi.org/10.1074/mcp.M116.060368 10.1074/mcp.M116.060368]; GPMDB: [http://gpmdb.org/data/keyword/27535140 23]. | #Solari FA, Mattheij NJ, Burkhart JM, Swieringa F, Collins PW, Cosemans JM, Sickmann A, Heemskerk JW, Zahedi RP, (2016) "Combined Quantification of the Global Proteome, Phosphoproteome, and Proteolytic Cleavage to Characterize Altered Platelet Functions in the Human Scott Syndrome." <i>Mol Cell Proteomics</i> <b>15</b>(10):3154–3169; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27535140 27535140]; doi: [https://dx.doi.org/10.1074/mcp.M116.060368 10.1074/mcp.M116.060368]; GPMDB: [http://gpmdb.org/data/keyword/27535140 23]. | ||
+ | #Wei W, Luo W, Wu F, Peng X, Zhang Y, Zhang M, Zhao Y, Su N, Qi Y, Chen L, Zhang Y, Wen B, He F, Xu P, (2016) "Deep Coverage Proteomics Identifies More Low-Abundance Missing Proteins in Human Testis Tissue with Q-Exactive HF Mass Spectrometer." <i>J Proteome Res</i> <b>15</b>(11):3988–3997; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27535590 27535590]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00390 10.1021/acs.jproteome.6b00390]; GPMDB: [http://gpmdb.org/data/keyword/27535590 150]. | ||
#Dobó J, Szakács D, Oroszlán G, Kortvely E, Kiss B, Boros E, Szász R, Závodszky P, Gál P, Pál G, (2016) "MASP-3 is the exclusive pro-factor D activator in resting blood: the lectin and the alternative complement pathways are fundamentally linked." <i>Sci Rep</i> <b>6</b>:31877; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27535802 27535802]; doi: [https://dx.doi.org/10.1038/srep31877 10.1038/srep31877]; GPMDB: [http://gpmdb.org/data/keyword/27535802 6]. | #Dobó J, Szakács D, Oroszlán G, Kortvely E, Kiss B, Boros E, Szász R, Závodszky P, Gál P, Pál G, (2016) "MASP-3 is the exclusive pro-factor D activator in resting blood: the lectin and the alternative complement pathways are fundamentally linked." <i>Sci Rep</i> <b>6</b>:31877; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27535802 27535802]; doi: [https://dx.doi.org/10.1038/srep31877 10.1038/srep31877]; GPMDB: [http://gpmdb.org/data/keyword/27535802 6]. | ||
#Zhang P, Karani R, Turner RL, Dufresne C, Ferri S, Van Eyk JE, Semba RD, (2016) "The proteome of normal human retrobulbar optic nerve and sclera." <i>Proteomics</i> <b>16</b>(19):2592–2596; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27538499 27538499]; doi: [https://dx.doi.org/10.1002/pmic.201600229 10.1002/pmic.201600229]; GPMDB: [http://gpmdb.org/data/keyword/27538499 60]. | #Zhang P, Karani R, Turner RL, Dufresne C, Ferri S, Van Eyk JE, Semba RD, (2016) "The proteome of normal human retrobulbar optic nerve and sclera." <i>Proteomics</i> <b>16</b>(19):2592–2596; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27538499 27538499]; doi: [https://dx.doi.org/10.1002/pmic.201600229 10.1002/pmic.201600229]; GPMDB: [http://gpmdb.org/data/keyword/27538499 60]. | ||
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#Häupl B, Ihling CH, Sinz A, (2016) "Protein Interaction Network of Human Protein Kinase D2 Revealed by Chemical Cross-Linking/Mass Spectrometry." <i>J Proteome Res</i> <b>15</b>(10):3686–3699; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27559607 27559607]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00513 10.1021/acs.jproteome.6b00513]; GPMDB: [http://gpmdb.org/data/keyword/27559607 81]. | #Häupl B, Ihling CH, Sinz A, (2016) "Protein Interaction Network of Human Protein Kinase D2 Revealed by Chemical Cross-Linking/Mass Spectrometry." <i>J Proteome Res</i> <b>15</b>(10):3686–3699; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27559607 27559607]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00513 10.1021/acs.jproteome.6b00513]; GPMDB: [http://gpmdb.org/data/keyword/27559607 81]. | ||
#Jiang Y, Lee J, Lee JH, Lee JW, Kim JH, Choi WH, Yoo YD, Cha-Molstad H, Kim BY, Kwon YT, Noh SA, Kim KP, Lee MJ, (2016) "The arginylation branch of the N-end rule pathway positively regulates cellular autophagic flux and clearance of proteotoxic proteins." <i>Autophagy</i> <b>12</b>(11):2197–2212; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27560450 27560450]; doi: [https://dx.doi.org/10.1080/15548627.2016.1222991 10.1080/15548627.2016.1222991]; GPMDB: [http://gpmdb.org/data/keyword/27560450 2]. | #Jiang Y, Lee J, Lee JH, Lee JW, Kim JH, Choi WH, Yoo YD, Cha-Molstad H, Kim BY, Kwon YT, Noh SA, Kim KP, Lee MJ, (2016) "The arginylation branch of the N-end rule pathway positively regulates cellular autophagic flux and clearance of proteotoxic proteins." <i>Autophagy</i> <b>12</b>(11):2197–2212; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27560450 27560450]; doi: [https://dx.doi.org/10.1080/15548627.2016.1222991 10.1080/15548627.2016.1222991]; GPMDB: [http://gpmdb.org/data/keyword/27560450 2]. | ||
+ | #Hesse AM, Dupierris V, Adam C, Court M, Barthe D, Emadali A, Masselon C, Ferro M, Bruley C, (2016) "hEIDI: An Intuitive Application Tool To Organize and Treat Large-Scale Proteomics Data." <i>J Proteome Res</i> <b>15</b>(10):3896–3903; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27560970 27560970]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00853 10.1021/acs.jproteome.5b00853]; GPMDB: [http://gpmdb.org/data/keyword/27560970 142]. | ||
#Ross SH, Rollings C, Anderson KE, Hawkins PT, Stephens LR, Cantrell DA, (2016) "Phosphoproteomic Analyses of Interleukin 2 Signaling Reveal Integrated JAK Kinase-Dependent and -Independent Networks in CD8(+) T Cells." <i>Immunity</i> <b>45</b>(3):685–700; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27566939 27566939]; doi: [https://dx.doi.org/10.1016/j.immuni.2016.07.022 10.1016/j.immuni.2016.07.022]; GPMDB: [http://gpmdb.org/data/keyword/27566939 208]. | #Ross SH, Rollings C, Anderson KE, Hawkins PT, Stephens LR, Cantrell DA, (2016) "Phosphoproteomic Analyses of Interleukin 2 Signaling Reveal Integrated JAK Kinase-Dependent and -Independent Networks in CD8(+) T Cells." <i>Immunity</i> <b>45</b>(3):685–700; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27566939 27566939]; doi: [https://dx.doi.org/10.1016/j.immuni.2016.07.022 10.1016/j.immuni.2016.07.022]; GPMDB: [http://gpmdb.org/data/keyword/27566939 208]. | ||
#Larsen SC, Sylvestersen KB, Mund A, Lyon D, Mullari M, Madsen MV, Daniel JA, Jensen LJ, Nielsen ML, (2016) "Proteome-wide analysis of arginine monomethylation reveals widespread occurrence in human cells." <i>Sci Signal</i> <b>9</b>(443):rs9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27577262 27577262]; doi: [https://dx.doi.org/10.1126/scisignal.aaf7329 10.1126/scisignal.aaf7329]; GPMDB: [http://gpmdb.org/data/keyword/27577262 10]. | #Larsen SC, Sylvestersen KB, Mund A, Lyon D, Mullari M, Madsen MV, Daniel JA, Jensen LJ, Nielsen ML, (2016) "Proteome-wide analysis of arginine monomethylation reveals widespread occurrence in human cells." <i>Sci Signal</i> <b>9</b>(443):rs9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27577262 27577262]; doi: [https://dx.doi.org/10.1126/scisignal.aaf7329 10.1126/scisignal.aaf7329]; GPMDB: [http://gpmdb.org/data/keyword/27577262 10]. | ||
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#Mauri M, Kirchner M, Aharoni R, Ciolli Mattioli C, van den Bruck D, Gutkovitch N, Modepalli V, Selbach M, Moran Y, Chekulaeva M, (2016) "Conservation of miRNA-mediated silencing mechanisms across 600 million years of animal evolution." <i>Nucleic Acids Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27604873 27604873]; doi: [https://dx.doi.org/10.1093/nar/gkw792 10.1093/nar/gkw792]; GPMDB: [http://gpmdb.org/data/keyword/27604873 35]. | #Mauri M, Kirchner M, Aharoni R, Ciolli Mattioli C, van den Bruck D, Gutkovitch N, Modepalli V, Selbach M, Moran Y, Chekulaeva M, (2016) "Conservation of miRNA-mediated silencing mechanisms across 600 million years of animal evolution." <i>Nucleic Acids Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27604873 27604873]; doi: [https://dx.doi.org/10.1093/nar/gkw792 10.1093/nar/gkw792]; GPMDB: [http://gpmdb.org/data/keyword/27604873 35]. | ||
#Lee J, McKinney KQ, Pavlopoulos AJ, Han MH, Kim SH, Kim HJ, Hwang S, (2016) "Exosomal proteome analysis of cerebrospinal fluid detects biosignatures of neuromyelitis optica and multiple sclerosis." <i>Clin Chim Acta</i> <b>462</b>:118–126; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27609124 27609124]; doi: [https://dx.doi.org/10.1016/j.cca.2016.09.001 10.1016/j.cca.2016.09.001]; GPMDB: [http://gpmdb.org/data/keyword/27609124 24]. | #Lee J, McKinney KQ, Pavlopoulos AJ, Han MH, Kim SH, Kim HJ, Hwang S, (2016) "Exosomal proteome analysis of cerebrospinal fluid detects biosignatures of neuromyelitis optica and multiple sclerosis." <i>Clin Chim Acta</i> <b>462</b>:118–126; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27609124 27609124]; doi: [https://dx.doi.org/10.1016/j.cca.2016.09.001 10.1016/j.cca.2016.09.001]; GPMDB: [http://gpmdb.org/data/keyword/27609124 24]. | ||
+ | #Mulvaney KM, Matson JP, Siesser PF, Tamir TY, Goldfarb D, Jacobs TM, Cloer EW, Harrison JS, Vaziri C, Cook JG, Major MB, (2016) "Identification and Characterization of MCM3 as a Kelch-like ECH-associated Protein 1 (KEAP1) Substrate." <i>J Biol Chem</i> <b>291</b>(45):23719–23733; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27621311 27621311]; doi: [https://dx.doi.org/10.1074/jbc.M116.729418 10.1074/jbc.M116.729418]; GPMDB: [http://gpmdb.org/data/keyword/27621311 22]. | ||
#Subramanian S, Souleimanov A, Smith DL, (2016) "Proteomic Studies on the Effects of Lipo-Chitooligosaccharide and Thuricin 17 under Unstressed and Salt Stressed Conditions in Arabidopsis thaliana." <i>Front Plant Sci</i> <b>7</b>:1314; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27625672 27625672]; doi: [https://dx.doi.org/10.3389/fpls.2016.01314 10.3389/fpls.2016.01314]; GPMDB: [http://gpmdb.org/data/keyword/27625672 36]. | #Subramanian S, Souleimanov A, Smith DL, (2016) "Proteomic Studies on the Effects of Lipo-Chitooligosaccharide and Thuricin 17 under Unstressed and Salt Stressed Conditions in Arabidopsis thaliana." <i>Front Plant Sci</i> <b>7</b>:1314; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27625672 27625672]; doi: [https://dx.doi.org/10.3389/fpls.2016.01314 10.3389/fpls.2016.01314]; GPMDB: [http://gpmdb.org/data/keyword/27625672 36]. | ||
#Stroud DA, Surgenor EE, Formosa LE, Reljic B, Frazier AE, Dibley MG, Osellame LD, Stait T, Beilharz TH, Thorburn DR, Salim A, Ryan MT, (2016) "Accessory subunits are integral for assembly and function of human mitochondrial complex I." <i>Nature</i> <b>538</b>(7623):123–126; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27626371 27626371]; doi: [https://dx.doi.org/10.1038/nature19754 10.1038/nature19754]; GPMDB: [http://gpmdb.org/data/keyword/27626371 10]. | #Stroud DA, Surgenor EE, Formosa LE, Reljic B, Frazier AE, Dibley MG, Osellame LD, Stait T, Beilharz TH, Thorburn DR, Salim A, Ryan MT, (2016) "Accessory subunits are integral for assembly and function of human mitochondrial complex I." <i>Nature</i> <b>538</b>(7623):123–126; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27626371 27626371]; doi: [https://dx.doi.org/10.1038/nature19754 10.1038/nature19754]; GPMDB: [http://gpmdb.org/data/keyword/27626371 10]. | ||
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#Athanason MG, Stevens SM Jr, Burkhardt BR, (2016) "Hepatic SILAC proteomic data from PANDER transgenic model." <i>Data Brief</i> <b>9</b>:159–62; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27642623 27642623]; doi: [https://dx.doi.org/10.1016/j.dib.2016.08.017 10.1016/j.dib.2016.08.017]; GPMDB: [http://gpmdb.org/data/keyword/27642623 18]. | #Athanason MG, Stevens SM Jr, Burkhardt BR, (2016) "Hepatic SILAC proteomic data from PANDER transgenic model." <i>Data Brief</i> <b>9</b>:159–62; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27642623 27642623]; doi: [https://dx.doi.org/10.1016/j.dib.2016.08.017 10.1016/j.dib.2016.08.017]; GPMDB: [http://gpmdb.org/data/keyword/27642623 18]. | ||
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#Radzikowski JL, Vedelaar S, Siegel D, Ortega ÁD, Schmidt A, Heinemann M, (2016) "Bacterial persistence is an active σS stress response to metabolic flux limitation." <i>Mol Syst Biol</i> <b>12</b>(9):882; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27655400 27655400]; GPMDB: [http://gpmdb.org/data/keyword/27655400 30]. | #Radzikowski JL, Vedelaar S, Siegel D, Ortega ÁD, Schmidt A, Heinemann M, (2016) "Bacterial persistence is an active σS stress response to metabolic flux limitation." <i>Mol Syst Biol</i> <b>12</b>(9):882; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27655400 27655400]; GPMDB: [http://gpmdb.org/data/keyword/27655400 30]. | ||
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#Dörfel MJ, Fang H, Crain J, Klingener M, Weiser J, Lyon GJ, (2016) "Proteomic and genomic characterization of a yeast model for Ogden syndrome." <i>Yeast</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27668839 27668839]; doi: [https://dx.doi.org/10.1002/yea.3211 10.1002/yea.3211]; GPMDB: [http://gpmdb.org/data/keyword/27668839 1]. | #Dörfel MJ, Fang H, Crain J, Klingener M, Weiser J, Lyon GJ, (2016) "Proteomic and genomic characterization of a yeast model for Ogden syndrome." <i>Yeast</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27668839 27668839]; doi: [https://dx.doi.org/10.1002/yea.3211 10.1002/yea.3211]; GPMDB: [http://gpmdb.org/data/keyword/27668839 1]. | ||
#Lee A, Miller D, Henry R, Paruchuri VD, O'Meally RN, Boronina T, Cole RN, Zachara NE, (2016) "Combined Antibody/Lectin Enrichment Identifies Extensive Changes in the O-GlcNAc Sub-proteome upon Oxidative Stress." <i>J Proteome Res</i> <b>15</b>(12):4318–4336; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27669760 27669760]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00369 10.1021/acs.jproteome.6b00369]; GPMDB: [http://gpmdb.org/data/keyword/27669760 14]. | #Lee A, Miller D, Henry R, Paruchuri VD, O'Meally RN, Boronina T, Cole RN, Zachara NE, (2016) "Combined Antibody/Lectin Enrichment Identifies Extensive Changes in the O-GlcNAc Sub-proteome upon Oxidative Stress." <i>J Proteome Res</i> <b>15</b>(12):4318–4336; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27669760 27669760]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00369 10.1021/acs.jproteome.6b00369]; GPMDB: [http://gpmdb.org/data/keyword/27669760 14]. | ||
+ | #Smirnov A, Förstner KU, Holmqvist E, Otto A, Günster R, Becher D, Reinhardt R, Vogel J, (2016) "Grad-seq guides the discovery of ProQ as a major small RNA-binding protein." <i>Proc Natl Acad Sci U S A</i> <b>113</b>(41):11591–11596; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27671629 27671629]; doi: [https://dx.doi.org/10.1073/pnas.1609981113 10.1073/pnas.1609981113]; GPMDB: [http://gpmdb.org/data/keyword/27671629 200]. | ||
#Lyon SM, Mayampurath A, Rogers MR, Wolfgeher DJ, Fisher SM, Volchenboum SL, He TC, Reid RR, (2016) "A method for whole protein isolation from human cranial bone." <i>Anal Biochem</i> <b>515</b>:33–39; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27677936 27677936]; doi: [https://dx.doi.org/10.1016/j.ab.2016.09.021 10.1016/j.ab.2016.09.021]; GPMDB: [http://gpmdb.org/data/keyword/27677936 10]. | #Lyon SM, Mayampurath A, Rogers MR, Wolfgeher DJ, Fisher SM, Volchenboum SL, He TC, Reid RR, (2016) "A method for whole protein isolation from human cranial bone." <i>Anal Biochem</i> <b>515</b>:33–39; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27677936 27677936]; doi: [https://dx.doi.org/10.1016/j.ab.2016.09.021 10.1016/j.ab.2016.09.021]; GPMDB: [http://gpmdb.org/data/keyword/27677936 10]. | ||
#Larkin SE, Johnston HE, Jackson TR, Jamieson DG, Roumeliotis TI, Mockridge CI, Michael A, Manousopoulou A, Papachristou EK, Brown MD, Clarke NW, Pandha H, Aukim-Hastie CL, Cragg MS, Garbis SD, Townsend PA, (2016) "Detection of candidate biomarkers of prostate cancer progression in serum: a depletion-free 3D LC/MS quantitative proteomics pilot study." <i>Br J Cancer</i> <b>115</b>(9):1078–1086; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27685442 27685442]; doi: [https://dx.doi.org/10.1038/bjc.2016.291 10.1038/bjc.2016.291]; GPMDB: [http://gpmdb.org/data/keyword/27685442 8]. | #Larkin SE, Johnston HE, Jackson TR, Jamieson DG, Roumeliotis TI, Mockridge CI, Michael A, Manousopoulou A, Papachristou EK, Brown MD, Clarke NW, Pandha H, Aukim-Hastie CL, Cragg MS, Garbis SD, Townsend PA, (2016) "Detection of candidate biomarkers of prostate cancer progression in serum: a depletion-free 3D LC/MS quantitative proteomics pilot study." <i>Br J Cancer</i> <b>115</b>(9):1078–1086; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27685442 27685442]; doi: [https://dx.doi.org/10.1038/bjc.2016.291 10.1038/bjc.2016.291]; GPMDB: [http://gpmdb.org/data/keyword/27685442 8]. | ||
#Martello R, Leutert M, Jungmichel S, Bilan V, Larsen SC, Young C, Hottiger MO, Nielsen ML, (2016) "Proteome-wide identification of the endogenous ADP-ribosylome of mammalian cells and tissue." <i>Nat Commun</i> <b>7</b>:12917; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27686526 27686526]; doi: [https://dx.doi.org/10.1038/ncomms12917 10.1038/ncomms12917]; GPMDB: [http://gpmdb.org/data/keyword/27686526 15]. | #Martello R, Leutert M, Jungmichel S, Bilan V, Larsen SC, Young C, Hottiger MO, Nielsen ML, (2016) "Proteome-wide identification of the endogenous ADP-ribosylome of mammalian cells and tissue." <i>Nat Commun</i> <b>7</b>:12917; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27686526 27686526]; doi: [https://dx.doi.org/10.1038/ncomms12917 10.1038/ncomms12917]; GPMDB: [http://gpmdb.org/data/keyword/27686526 15]. | ||
+ | #Mathieu AA, Ohl-Séguy E, Dubois ML, Jean D, Jones C, Boudreau F, Boisvert FM, (2016) "Subcellular proteomics analysis of different stages of colorectal cancer cell lines." <i>Proteomics</i> <b>16</b>(23):3009–3018; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27689624 27689624]; doi: [https://dx.doi.org/10.1002/pmic.201600314 10.1002/pmic.201600314]; GPMDB: [http://gpmdb.org/data/keyword/27689624 52]. | ||
#Greenwood EJ, Matheson NJ, Wals K, van den Boomen DJ, Antrobus R, Williamson JC, Lehner PJ, (2016) "Temporal proteomic analysis of HIV infection reveals remodelling of the host phosphoproteome by lentiviral Vif variants." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27690223 27690223]; doi: [https://dx.doi.org/10.7554/eLife.18296 10.7554/eLife.18296]; GPMDB: [http://gpmdb.org/data/keyword/27690223 10]. | #Greenwood EJ, Matheson NJ, Wals K, van den Boomen DJ, Antrobus R, Williamson JC, Lehner PJ, (2016) "Temporal proteomic analysis of HIV infection reveals remodelling of the host phosphoproteome by lentiviral Vif variants." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27690223 27690223]; doi: [https://dx.doi.org/10.7554/eLife.18296 10.7554/eLife.18296]; GPMDB: [http://gpmdb.org/data/keyword/27690223 10]. | ||
#Gautier V, Cayrol C, Farache D, Roga S, Monsarrat B, Burlet-Schiltz O, Gonzalez de Peredo A, Girard JP, (2016) "Extracellular IL-33 cytokine, but not endogenous nuclear IL-33, regulates protein expression in endothelial cells." <i>Sci Rep</i> <b>6</b>:34255; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27694941 27694941]; doi: [https://dx.doi.org/10.1038/srep34255 10.1038/srep34255]; GPMDB: [http://gpmdb.org/data/keyword/27694941 252]. | #Gautier V, Cayrol C, Farache D, Roga S, Monsarrat B, Burlet-Schiltz O, Gonzalez de Peredo A, Girard JP, (2016) "Extracellular IL-33 cytokine, but not endogenous nuclear IL-33, regulates protein expression in endothelial cells." <i>Sci Rep</i> <b>6</b>:34255; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27694941 27694941]; doi: [https://dx.doi.org/10.1038/srep34255 10.1038/srep34255]; GPMDB: [http://gpmdb.org/data/keyword/27694941 252]. | ||
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#Kroksveen AC, Guldbrandsen A, Vaudel M, Lereim RR, Barsnes H, Myhr KM, Torkildsen Ø, Berven FS, (2016) "In-depth cerebrospinal fluid quantitative proteome and deglycoproteome analysis; presenting a comprehensive picture of pathways and processes affected by multiple sclerosis." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27728768 27728768]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00659 10.1021/acs.jproteome.6b00659]; GPMDB: [http://gpmdb.org/data/keyword/27728768 26]. | #Kroksveen AC, Guldbrandsen A, Vaudel M, Lereim RR, Barsnes H, Myhr KM, Torkildsen Ø, Berven FS, (2016) "In-depth cerebrospinal fluid quantitative proteome and deglycoproteome analysis; presenting a comprehensive picture of pathways and processes affected by multiple sclerosis." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27728768 27728768]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00659 10.1021/acs.jproteome.6b00659]; GPMDB: [http://gpmdb.org/data/keyword/27728768 26]. | ||
#Streeter I, Harrison PW, Faulconbridge A, The HipSci Consortium., Flicek P, Parkinson H, Clarke L, (2016) "The human-induced pluripotent stem cell initiative-data resources for cellular genetics." <i>Nucleic Acids Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27733501 27733501]; doi: [https://dx.doi.org/10.1093/nar/gkw928 10.1093/nar/gkw928]; GPMDB: [http://gpmdb.org/data/keyword/27733501 20]. | #Streeter I, Harrison PW, Faulconbridge A, The HipSci Consortium., Flicek P, Parkinson H, Clarke L, (2016) "The human-induced pluripotent stem cell initiative-data resources for cellular genetics." <i>Nucleic Acids Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27733501 27733501]; doi: [https://dx.doi.org/10.1093/nar/gkw928 10.1093/nar/gkw928]; GPMDB: [http://gpmdb.org/data/keyword/27733501 20]. | ||
+ | #Kuzmanov U, Guo H, Buchsbaum D, Cosme J, Abbasi C, Isserlin R, Sharma P, Gramolini AO, Emili A, (2016) "Global phosphoproteomic profiling reveals perturbed signaling in a mouse model of dilated cardiomyopathy." <i>Proc Natl Acad Sci U S A</i> <b>113</b>(44):12592–12597; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27742792 27742792]; doi: [https://dx.doi.org/10.1073/pnas.1606444113 10.1073/pnas.1606444113]; GPMDB: [http://gpmdb.org/data/keyword/27742792 126]. | ||
+ | #Sebé-Pedrós A, Peña MI, Capella-Gutiérrez S, Antó M, Gabaldón T, Ruiz-Trillo I, Sabidó E, (2016) "High-Throughput Proteomics Reveals the Unicellular Roots of Animal Phosphosignaling and Cell Differentiation." <i>Dev Cell</i> <b>39</b>(2):186–197; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27746046 27746046]; doi: [https://dx.doi.org/10.1016/j.devcel.2016.09.019 10.1016/j.devcel.2016.09.019]; GPMDB: [http://gpmdb.org/data/keyword/27746046 30]. | ||
+ | #Varano M, Gaspari M, Quirino A, Cuda G, Liberto MC, Focà A, (2016) "Temperature-dependent regulation of the Ochrobactrum anthropi proteome." <i>Proteomics</i> <b>16</b>(23):3019–3024; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27753207 27753207]; doi: [https://dx.doi.org/10.1002/pmic.201600048 10.1002/pmic.201600048]; GPMDB: [http://gpmdb.org/data/keyword/27753207 12]. | ||
+ | #Liljedahl L, Pedersen MH, Norlin J, McGuire JN, James P, (2016) "N-glycosylation proteome enrichment analysis in kidney reveals differences between diabetic mouse models." <i>Clin Proteomics</i> <b>13</b>:22; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27757071 27757071]; doi: [https://dx.doi.org/10.1186/s12014-016-9123-z 10.1186/s12014-016-9123-z]; GPMDB: [http://gpmdb.org/data/keyword/27757071 48]. | ||
#Zammit CM, Weiland F, Brugger J, Wade B, Winderbaum LJ, Nies DH, Southam G, Hoffmann P, Reith F, (2016) "Proteomic responses to gold(iii)-toxicity in the bacterium Cupriavidus metallidurans CH34." <i>Metallomics</i> <b>8</b>(11):1204–1216; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27757465 27757465]; doi: [https://dx.doi.org/10.1039/c6mt00142d 10.1039/c6mt00142d]; GPMDB: [http://gpmdb.org/data/keyword/27757465 56]. | #Zammit CM, Weiland F, Brugger J, Wade B, Winderbaum LJ, Nies DH, Southam G, Hoffmann P, Reith F, (2016) "Proteomic responses to gold(iii)-toxicity in the bacterium Cupriavidus metallidurans CH34." <i>Metallomics</i> <b>8</b>(11):1204–1216; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27757465 27757465]; doi: [https://dx.doi.org/10.1039/c6mt00142d 10.1039/c6mt00142d]; GPMDB: [http://gpmdb.org/data/keyword/27757465 56]. | ||
+ | #Sialana FJ, Gulyassy P, Májek P, Sjöstedt E, Kis V, Müller AC, Rudashevskaya EL, Mulder J, Bennett KL, Lubec G, (2016) "Mass spectrometric analysis of synaptosomal membrane preparations for the determination of brain receptors, transporters and channels." <i>Proteomics</i> <b>16</b>(22):2911–2920; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27759936 27759936]; doi: [https://dx.doi.org/10.1002/pmic.201600234 10.1002/pmic.201600234]; GPMDB: [http://gpmdb.org/data/keyword/27759936 86]. | ||
+ | #Duteil D, Tosic M, Lausecker F, Nenseth HZ, Müller JM, Urban S, Willmann D, Petroll K, Messaddeq N, Arrigoni L, Manke T, Kornfeld JW, Brüning JC, Zagoriy V, Meret M, Dengjel J, Kanouni T, Schüle R, (2016) "Lsd1 Ablation Triggers Metabolic Reprogramming of Brown Adipose Tissue." <i>Cell Rep</i> <b>17</b>(4):1008–1021; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27760309 27760309]; doi: [https://dx.doi.org/10.1016/j.celrep.2016.09.053 10.1016/j.celrep.2016.09.053]; GPMDB: [http://gpmdb.org/data/keyword/27760309 142]. | ||
#Sarvaiya HA, Lazar IM, (2016) "Insulin stimulated MCF7 breast cancer cells: Proteome dataset." <i>Data Brief</i> <b>9</b>:579–584; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27761513 27761513]; doi: [https://dx.doi.org/10.1016/j.dib.2016.09.025 10.1016/j.dib.2016.09.025]; GPMDB: [http://gpmdb.org/data/keyword/27761513 1]. | #Sarvaiya HA, Lazar IM, (2016) "Insulin stimulated MCF7 breast cancer cells: Proteome dataset." <i>Data Brief</i> <b>9</b>:579–584; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27761513 27761513]; doi: [https://dx.doi.org/10.1016/j.dib.2016.09.025 10.1016/j.dib.2016.09.025]; GPMDB: [http://gpmdb.org/data/keyword/27761513 1]. | ||
+ | #Richter E, Harms M, Ventz K, Nölker R, Fraunholz MJ, Mostertz J, Hochgräfe F, (2016) "Quantitative Proteomics Reveals the Dynamics of Protein Phosphorylation in Human Bronchial Epithelial Cells during Internalization, Phagosomal Escape, and Intracellular Replication of Staphylococcus aureus." <i>J Proteome Res</i> <b>15</b>(12):4369–4386; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27762562 27762562]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00421 10.1021/acs.jproteome.6b00421]; GPMDB: [http://gpmdb.org/data/keyword/27762562 75]. | ||
+ | #Assoni A, Coatti G, Valadares MC, Beccari M, Gomes J, Pelatti M, Mitne-Neto M, Carvalho VM, Zatz M, (2016) "Different Donors Mesenchymal Stromal Cells Secretomes Reveal Heterogeneous Profile of Relevance for Therapeutic Use." <i>Stem Cells Dev</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27762666 27762666]; doi: [https://dx.doi.org/10.1089/scd.2016.0218 10.1089/scd.2016.0218]; GPMDB: [http://gpmdb.org/data/keyword/27762666 48]. | ||
+ | #Schanzenbächer CT, Sambandan S, Langer JD, Schuman EM, (2016) "Nascent Proteome Remodeling following Homeostatic Scaling at Hippocampal Synapses." <i>Neuron</i> <b>92</b>(2):358–371; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27764671 27764671]; doi: [https://dx.doi.org/10.1016/j.neuron.2016.09.058 10.1016/j.neuron.2016.09.058]; GPMDB: [http://gpmdb.org/data/keyword/27764671 80]. | ||
+ | #Yu P, Hahne H, Wilhelm M, Kuster B, (2017) "Ethylene glycol improves electrospray ionization efficiency in bottom-up proteomics." <i>Anal Bioanal Chem</i> <b>409</b>(4):1049–1057; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27766361 27766361]; doi: [https://dx.doi.org/10.1007/s00216-016-0023-x 10.1007/s00216-016-0023-x]; GPMDB: [http://gpmdb.org/data/keyword/27766361 147]. | ||
+ | #Isogai T, van der Kammen R, Bleijerveld OB, Goerdayal SS, Argenzio E, Altelaar AF, Innocenti M, (2016) "Quantitative Proteomics Illuminates a Functional Interaction between mDia2 and the Proteasome." <i>J Proteome Res</i> <b>15</b>(12):4624–4637; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27769112 27769112]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00718 10.1021/acs.jproteome.6b00718]; GPMDB: [http://gpmdb.org/data/keyword/27769112 44]. | ||
+ | #Peng J, Cao J, Ng FM, Hill J, (2016) "Pseudomonas aeruginosa develops Ciprofloxacin resistance from low to high level with distinctive proteome changes." <i>J Proteomics</i> <b>152</b>:75–87; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27771372 27771372]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.10.005 10.1016/j.jprot.2016.10.005]; GPMDB: [http://gpmdb.org/data/keyword/27771372 25]. | ||
+ | #Rafiee MR, Girardot C, Sigismondo G, Krijgsveld J, (2016) "Expanding the Circuitry of Pluripotency by Selective Isolation of Chromatin-Associated Proteins." <i>Mol Cell</i> <b>64</b>(3):624–635; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27773674 27773674]; doi: [https://dx.doi.org/10.1016/j.molcel.2016.09.019 10.1016/j.molcel.2016.09.019]; GPMDB: [http://gpmdb.org/data/keyword/27773674 13]. | ||
#Duncan O, Trösch J, Fenske R, Taylor NL, Millar AH, (2016) "Mapping the Triticum aestivum proteome." <i>Plant J</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27775198 27775198]; doi: [https://dx.doi.org/10.1111/tpj.13402 10.1111/tpj.13402]; GPMDB: [http://gpmdb.org/data/keyword/27775198 28]. | #Duncan O, Trösch J, Fenske R, Taylor NL, Millar AH, (2016) "Mapping the Triticum aestivum proteome." <i>Plant J</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27775198 27775198]; doi: [https://dx.doi.org/10.1111/tpj.13402 10.1111/tpj.13402]; GPMDB: [http://gpmdb.org/data/keyword/27775198 28]. | ||
+ | #Maleki S, Kjellqvist S, Paloschi V, Magné J, Branca RM, Du L, Hultenby K, Petrini J, Fuxe J, MIBAVA Leducq Consortium., Lehtiö J, Franco-Cereceda A, Eriksson P, Björck HM, (2016) "Mesenchymal state of intimal cells may explain higher propensity to ascending aortic aneurysm in bicuspid aortic valves." <i>Sci Rep</i> <b>6</b>:35712; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27779199 27779199]; doi: [https://dx.doi.org/10.1038/srep35712 10.1038/srep35712]; GPMDB: [http://gpmdb.org/data/keyword/27779199 6]. | ||
+ | #Ward JA, McLellan L, Stockley M, Gibson KR, Whitlock GA, Knights C, Harrigan JA, Jacq X, Tate EW, (2016) "Quantitative Chemical Proteomic Profiling of Ubiquitin Specific Proteases in Intact Cancer Cells." <i>ACS Chem Biol</i> <b>11</b>(12):3268–3272; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27779380 27779380]; doi: [https://dx.doi.org/10.1021/acschembio.6b00766 10.1021/acschembio.6b00766]; GPMDB: [http://gpmdb.org/data/keyword/27779380 18]. | ||
+ | #Cunsolo V, Fasoli E, Di Francesco A, Saletti R, Muccilli V, Gallina S, Righetti PG, Foti S, (2016) "Polyphemus, Odysseus and the ovine milk proteome." <i>J Proteomics</i> <b>152</b>:58–74; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27784645 27784645]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.10.007 10.1016/j.jprot.2016.10.007]; GPMDB: [http://gpmdb.org/data/keyword/27784645 40]. | ||
#Weisser H, Wright JC, Mudge JM, Gutenbrunner P, Choudhary JS, (2016) "Flexible Data Analysis Pipeline for High-Confidence Proteogenomics." <i>J Proteome Res</i> <b>15</b>(12):4686–4695; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27786492 27786492]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00765 10.1021/acs.jproteome.6b00765]; GPMDB: [http://gpmdb.org/data/keyword/27786492 35]. | #Weisser H, Wright JC, Mudge JM, Gutenbrunner P, Choudhary JS, (2016) "Flexible Data Analysis Pipeline for High-Confidence Proteogenomics." <i>J Proteome Res</i> <b>15</b>(12):4686–4695; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27786492 27786492]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00765 10.1021/acs.jproteome.6b00765]; GPMDB: [http://gpmdb.org/data/keyword/27786492 35]. | ||
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#Leach MD, Kim T, DiGregorio S, Collins C, Zhang Z, Duennwald ML, Cowen LE, (2016) "Candida albicans Is Resistant to Polyglutamine Aggregation and Toxicity." <i>G3 (Bethesda)</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27807047 27807047]; doi: [https://dx.doi.org/10.1534/g3.116.035675 10.1534/g3.116.035675]; GPMDB: [http://gpmdb.org/data/keyword/27807047 6]. | #Leach MD, Kim T, DiGregorio S, Collins C, Zhang Z, Duennwald ML, Cowen LE, (2016) "Candida albicans Is Resistant to Polyglutamine Aggregation and Toxicity." <i>G3 (Bethesda)</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27807047 27807047]; doi: [https://dx.doi.org/10.1534/g3.116.035675 10.1534/g3.116.035675]; GPMDB: [http://gpmdb.org/data/keyword/27807047 6]. | ||
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#Bassani-Sternberg M, Bräunlein E, Klar R, Engleitner T, Sinitcyn P, Audehm S, Straub M, Weber J, Slotta-Huspenina J, Specht K, Martignoni ME, Werner A, Hein R, H Busch D, Peschel C, Rad R, Cox J, Mann M, Krackhardt AM, (2016) "Direct identification of clinically relevant neoepitopes presented on native human melanoma tissue by mass spectrometry." <i>Nat Commun</i> <b>7</b>:13404; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27869121 27869121]; doi: [https://dx.doi.org/10.1038/ncomms13404 10.1038/ncomms13404]; GPMDB: [http://gpmdb.org/data/keyword/27869121 138]. | #Bassani-Sternberg M, Bräunlein E, Klar R, Engleitner T, Sinitcyn P, Audehm S, Straub M, Weber J, Slotta-Huspenina J, Specht K, Martignoni ME, Werner A, Hein R, H Busch D, Peschel C, Rad R, Cox J, Mann M, Krackhardt AM, (2016) "Direct identification of clinically relevant neoepitopes presented on native human melanoma tissue by mass spectrometry." <i>Nat Commun</i> <b>7</b>:13404; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27869121 27869121]; doi: [https://dx.doi.org/10.1038/ncomms13404 10.1038/ncomms13404]; GPMDB: [http://gpmdb.org/data/keyword/27869121 138]. | ||
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+ | #Malty RH, Aoki H, Kumar A, Phanse S, Amin S, Zhang Q, Minic Z, Goebels F, Musso G, Wu Z, Abou-Tok H, Meyer M, Deineko V, Kassir S, Sidhu V, Jessulat M, Scott NE, Xiong X, Vlasblom J, Prasad B, Foster LJ, Alberio T, Garavaglia B, Yu H, Bader GD, Nakamura K, Parkinson J, Babu M, (2017) "A Map of Human Mitochondrial Protein Interactions Linked to Neurodegeneration Reveals New Mechanisms of Redox Homeostasis and NF-κB Signaling." <i>Cell Syst</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29128334 29128334]; doi: [https://dx.doi.org/10.1016/j.cels.2017.10.010 10.1016/j.cels.2017.10.010]; GPMDB: [http://gpmdb.org/data/keyword/29128334 109]. | ||
+ | #García-Berrocoso T, Llombart V, Colàs-Campàs L, Hainard A, Licker V, Penalba A, Ramiro L, Simats A, Bustamante A, Martínez-Saez E, Canals F, Sanchez JC, Montaner J, (2017) "Single Cell Immuno-laser Microdissection Coupled to Label-free Proteomics to Reveal the Proteotypes of Human Brain Cells After Ischemia." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29133510 29133510]; doi: [https://dx.doi.org/10.1074/mcp.RA117.000419 10.1074/mcp.RA117.000419]; GPMDB: [http://gpmdb.org/data/keyword/29133510 102]. | ||
+ | #Negretti NM, Gourley CR, Clair G, Adkins JN, Konkel ME, (2017) "The food-borne pathogen Campylobacter jejuni responds to the bile salt deoxycholate with countermeasures to reactive oxygen species." <i>Sci Rep</i> <b>7</b>(1):15455; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29133896 29133896]; doi: [https://dx.doi.org/10.1038/s41598-017-15379-5 10.1038/s41598-017-15379-5]; GPMDB: [http://gpmdb.org/data/keyword/29133896 8]. | ||
+ | #Doll S, Dreßen M, Geyer PE, Itzhak DN, Braun C, Doppler SA, Meier F, Deutsch MA, Lahm H, Lange R, Krane M, Mann M, (2017) "Region and cell-type resolved quantitative proteomic map of the human heart." <i>Nat Commun</i> <b>8</b>(1):1469; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29133944 29133944]; doi: [https://dx.doi.org/10.1038/s41467-017-01747-2 10.1038/s41467-017-01747-2]; GPMDB: [http://gpmdb.org/data/keyword/29133944 159]. | ||
+ | #Anders F, Liu A, Mann C, Teister J, Lauzi J, Thanos S, Grus FH, Pfeiffer N, Prokosch V, (2017) "The Small Heat Shock Protein α-Crystallin B Shows Neuroprotective Properties in a Glaucoma Animal Model." <i>Int J Mol Sci</i> <b>18</b>(11):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29135941 29135941]; doi: [https://dx.doi.org/10.3390/ijms18112418 10.3390/ijms18112418]; GPMDB: [http://gpmdb.org/data/keyword/29135941 8]. | ||
+ | #Geis-Asteggiante L, Belew AT, Clements VK, Edwards NJ, Ostrand-Rosenberg S, El-Sayed NM, Fenselau C, (2017) "Differential content of proteins, mRNAs, and miRNAs suggests that MDSC and their exosomes may mediate distinct immune suppressive functions." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29139296 29139296]; doi: [https://dx.doi.org/10.1021/acs.jproteome.7b00646 10.1021/acs.jproteome.7b00646]; GPMDB: [http://gpmdb.org/data/keyword/29139296 60]. | ||
+ | #Worzfeld T, Finkernagel F, Reinartz S, Konzer A, Adhikary T, Nist A, Stiewe T, Wagner U, Looso M, Graumann J, Müller R, (2017) "Proteotranscriptomics Reveal Signaling Networks in the Ovarian Cancer Microenvironment." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29141914 29141914]; doi: [https://dx.doi.org/10.1074/mcp.RA117.000400 10.1074/mcp.RA117.000400]; GPMDB: [http://gpmdb.org/data/keyword/29141914 121]. | ||
+ | #Yilmaz O, Patinote A, Nguyen TV, Com E, Lavigne R, Pineau C, Sullivan CV, Bobe J, (2017) "Scrambled eggs: Proteomic portraits and novel biomarkers of egg quality in zebrafish (Danio rerio)." <i>PLoS One</i> <b>12</b>(11):e0188084; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29145436 29145436]; doi: [https://dx.doi.org/10.1371/journal.pone.0188084 10.1371/journal.pone.0188084]; GPMDB: [http://gpmdb.org/data/keyword/29145436 57]. | ||
+ | #Cherry JD, Zeineddin A, Dammer EB, Webster JA, Duong D, Seyfried NT, Levey AI, Alvarez VE, Huber BR, Stein TD, Kiernan PT, McKee AC, Lah JJ, Hales CM, (2017) "Characterization of Detergent Insoluble Proteome in Chronic Traumatic Encephalopathy." <i>J Neuropathol Exp Neurol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29145658 29145658]; doi: [https://dx.doi.org/10.1093/jnen/nlx100 10.1093/jnen/nlx100]; GPMDB: [http://gpmdb.org/data/keyword/29145658 4]. | ||
+ | #Korkmaz AG, Popov T, Peisl L, Codrea MC, Nahnsen S, Steimle A, Velic A, Macek B, von Bergen M, Bernhardt J, Frick JS, (2017) "Proteome and phosphoproteome analysis of commensally induced dendritic cell maturation states." <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29155090 29155090]; doi: [https://dx.doi.org/10.1016/j.jprot.2017.11.008 10.1016/j.jprot.2017.11.008]; GPMDB: [http://gpmdb.org/data/keyword/29155090 21]. | ||
+ | #Föll MC, Fahrner M, Gretzmeier C, Thoma K, Biniossek ML, Kiritsi D, Meiss F, Schilling O, Nyström A, Kern JS, (2017) "Identification of tissue damage, extracellular matrix remodeling and bacterial challenge as common mechanisms associated with high-risk cutaneous squamous cell carcinomas." <i>Matrix Biol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29158163 29158163]; doi: [https://dx.doi.org/10.1016/j.matbio.2017.11.004 10.1016/j.matbio.2017.11.004]; GPMDB: [http://gpmdb.org/data/keyword/29158163 24]. | ||
+ | #Hoffman MA, Fang B, Haura EB, Rix U, Koomen JM, (2017) "Comparison of Quantitative Mass Spectrometry Platforms for Monitoring Kinase ATP Probe Uptake in Lung Cancer." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29164889 29164889]; doi: [https://dx.doi.org/10.1021/acs.jproteome.7b00329 10.1021/acs.jproteome.7b00329]; GPMDB: [http://gpmdb.org/data/keyword/29164889 18]. | ||
+ | #Hosp F, Gutiérrez-Ángel S, Schaefer MH, Cox J, Meissner F, Hipp MS, Hartl FU, Klein R, Dudanova I, Mann M, (2017) "Spatiotemporal Proteomic Profiling of Huntington's Disease Inclusions Reveals Widespread Loss of Protein Function." <i>Cell Rep</i> <b>21</b>(8):2291–2303; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29166617 29166617]; doi: [https://dx.doi.org/10.1016/j.celrep.2017.10.097 10.1016/j.celrep.2017.10.097]; GPMDB: [http://gpmdb.org/data/keyword/29166617 196]. | ||
+ | #Babu M, Bundalovic-Torma C, Calmettes C, Phanse S, Zhang Q, Jiang Y, Minic Z, Kim S, Mehla J, Gagarinova A, Rodionova I, Kumar A, Guo H, Kagan O, Pogoutse O, Aoki H, Deineko V, Caufield JH, Holtzapple E, Zhang Z, Vastermark A, Pandya Y, Lai CC, El Bakkouri M, Hooda Y, Shah M, Burnside D, Hooshyar M, Vlasblom J, Rajagopala SV, Golshani A, Wuchty S, F Greenblatt J, Saier M, Uetz P, F Moraes T, Parkinson J, Emili A, (2017) "Global landscape of cell envelope protein complexes in Escherichia coli." <i>Nat Biotechnol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29176613 29176613]; doi: [https://dx.doi.org/10.1038/nbt.4024 10.1038/nbt.4024]; GPMDB: [http://gpmdb.org/data/keyword/29176613 2972]. | ||
+ | #Kelstrup CD, Bekker-Jensen DB, Arrey TN, Hogrebe A, Harder A, Olsen JV, (2018) "Performance Evaluation of the Q Exactive HF-X for Shotgun Proteomics." <i>J Proteome Res</i> <b>17</b>(1):727–738; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29183128 29183128]; doi: [https://dx.doi.org/10.1021/acs.jproteome.7b00602 10.1021/acs.jproteome.7b00602]; GPMDB: [http://gpmdb.org/data/keyword/29183128 107]. | ||
+ | #Winter DL, Hart-Smith G, Wilkins MR, (2018) "Characterization of Protein Methyltransferases Rkm1, Rkm4, Efm4, Efm7, Set5 and Hmt1 Reveals Extensive Post-Translational Modification." <i>J Mol Biol</i> <b>430</b>(1):102–118; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29183786 29183786]; doi: [https://dx.doi.org/10.1016/j.jmb.2017.11.009 10.1016/j.jmb.2017.11.009]; GPMDB: [http://gpmdb.org/data/keyword/29183786 18]. | ||
+ | #Lacombe M, Marie-Desvergne C, Combes F, Kraut A, Bruley C, Vandenbrouck Y, Chamel Mossuz V, Couté Y, Brun V, (2017) "Proteomic characterization of human exhaled breath condensate." <i>J Breath Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29189203 29189203]; doi: [https://dx.doi.org/10.1088/1752-7163/aa9e71 10.1088/1752-7163/aa9e71]; GPMDB: [http://gpmdb.org/data/keyword/29189203 4]. | ||
+ | #Klaeger S, Heinzlmeir S, Wilhelm M, Polzer H, Vick B, Koenig PA, Reinecke M, Ruprecht B, Petzoldt S, Meng C, Zecha J, Reiter K, Qiao H, Helm D, Koch H, Schoof M, Canevari G, Casale E, Depaolini SR, Feuchtinger A, Wu Z, Schmidt T, Rueckert L, Becker W, Huenges J, Garz AK, Gohlke BO, Zolg DP, Kayser G, Vooder T, Preissner R, Hahne H, Tõnisson N, Kramer K, Götze K, Bassermann F, Schlegl J, Ehrlich HC, Aiche S, Walch A, Greif PA, Schneider S, Felder ER, Ruland J, Médard G, Jeremias I, Spiekermann K, Kuster B, (2017) "The target landscape of clinical kinase drugs." <i>Science</i> <b>358</b>(6367):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29191878 29191878]; doi: [https://dx.doi.org/10.1126/science.aan4368 10.1126/science.aan4368]; GPMDB: [http://gpmdb.org/data/keyword/29191878 3032]. | ||
+ | #Smith MC, Timmins-Schiffman E, Coton M, Coton E, Hymery N, Nunn BL, Madec S, (2017) "Differential impacts of individual and combined exposures of deoxynivalenol and zearalenone on the HepaRG human hepatic cell proteome." <i>J Proteomics</i> <b>173</b>:89–98; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29208510 29208510]; doi: [https://dx.doi.org/10.1016/j.jprot.2017.11.025 10.1016/j.jprot.2017.11.025]; GPMDB: [http://gpmdb.org/data/keyword/29208510 72]. | ||
+ | #Herzog R, Boehm M, Unterwurzacher M, Wagner A, Parapatics K, Majek P, Mueller AC, Lichtenauer A, Bennett KL, Alper SL, Vychytil A, Aufricht C, Kratochwill K, (2017) "Effects of alanyl-glutamine treatment on the peritoneal dialysis effluent proteome reveal pathomechanism-associated molecular signatures." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29208752 29208752]; doi: [https://dx.doi.org/10.1074/mcp.RA117.000186 10.1074/mcp.RA117.000186]; GPMDB: [http://gpmdb.org/data/keyword/29208752 10]. | ||
+ | #Wierer M, Prestel M, Schiller H, Yan G, Schaab C, Azghandi S, Werner J, Kessler T, Malik R, Murgia M, Aherrahrou Z, Schunkert H, Dichgans M, Mann M, (2017) "Compartment-resolved Proteomic Analysis of Mouse Aorta during Atherosclerotic Plaque Formation Reveals Osteoclast-specific Protein Expression." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29208753 29208753]; doi: [https://dx.doi.org/10.1074/mcp.RA117.000315 10.1074/mcp.RA117.000315]; GPMDB: [http://gpmdb.org/data/keyword/29208753 156]. | ||
+ | #Stachowicz A, Siudut J, Suski M, Olszanecki R, Korbut R, Undas A, Wiśniewski JR, (2017) "Optimization of quantitative proteomic analysis of clots generated from plasma of patients with venous thromboembolism." <i>Clin Proteomics</i> <b>14</b>:38; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29209155 29209155]; doi: [https://dx.doi.org/10.1186/s12014-017-9173-x 10.1186/s12014-017-9173-x]; GPMDB: [http://gpmdb.org/data/keyword/29209155 36]. | ||
+ | #Muth T, Kohrs F, Heyer R, Benndorf D, Rapp E, Reichl U, Martens L, Renard BY, (2017) "MPA Portable: A Stand-Alone Software Package for Analyzing Metaproteome Samples on the Go." <i>Anal Chem</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29215871 29215871]; doi: [https://dx.doi.org/10.1021/acs.analchem.7b03544 10.1021/acs.analchem.7b03544]; GPMDB: [http://gpmdb.org/data/keyword/29215871 3]. | ||
+ | #Sobocińska J, Roszczenko-Jasińska P, Zaręba-Kozioł M, Hromada-Judycka A, Matveichuk OV, Traczyk G, Łukasiuk K, Kwiatkowska K, (2017) "LPS upregulates palmitoylated enzymes of the phosphatidylinositol cycle. An insight from proteomic studies." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29217618 29217618]; doi: [https://dx.doi.org/10.1074/mcp.RA117.000050 10.1074/mcp.RA117.000050]; GPMDB: [http://gpmdb.org/data/keyword/29217618 12]. | ||
+ | #Holthoff ER, Byrum SD, Mackintosh SG, Kelly T, Tackett AJ, Quick CM, Post SR, (2017) "Vulvar squamous cell carcinoma aggressiveness is associated with differential expression of collagen and STAT1." <i>Clin Proteomics</i> <b>14</b>:40; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29225558 29225558]; doi: [https://dx.doi.org/10.1186/s12014-017-9175-8 10.1186/s12014-017-9175-8]; GPMDB: [http://gpmdb.org/data/keyword/29225558 414]. | ||
+ | #Stewart NA, Gerlach RF, Gowland RL, Gron KJ, Montgomery J, (2017) "Sex determination of human remains from peptides in tooth enamel." <i>Proc Natl Acad Sci U S A</i> <b>114</b>(52):13649–13654; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29229823 29229823]; doi: [https://dx.doi.org/10.1073/pnas.1714926115 10.1073/pnas.1714926115]; GPMDB: [http://gpmdb.org/data/keyword/29229823 13]. | ||
+ | #Bizzotto S, Uzquiano A, Dingli F, Ershov D, Houllier A, Arras G, Richards M, Loew D, Minc N, Croquelois A, Houdusse A, Francis F, (2017) "Eml1 loss impairs apical progenitor spindle length and soma shape in the developing cerebral cortex." <i>Sci Rep</i> <b>7</b>(1):17308; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29229923 29229923]; doi: [https://dx.doi.org/10.1038/s41598-017-15253-4 10.1038/s41598-017-15253-4]; GPMDB: [http://gpmdb.org/data/keyword/29229923 28]. | ||
+ | #Alli-Shaik A, Wee S, Lim LHK, Gunaratne J, (2017) "Phosphoproteomics reveals network rewiring to a pro-adhesion state in annexin-1-deficient mammary epithelial cells." <i>Breast Cancer Res</i> <b>19</b>(1):132; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29233185 29233185]; doi: [https://dx.doi.org/10.1186/s13058-017-0924-4 10.1186/s13058-017-0924-4]; GPMDB: [http://gpmdb.org/data/keyword/29233185 263]. | ||
+ | #Chong C, Marino F, Pak HS, Racle J, Daniel RT, Müller M, Gfeller D, Coukos G, Bassani-Sternberg M, (2017) "High-throughput and sensitive immunopeptidomics platform reveals profound IFNγ-mediated remodeling of the HLA ligandome." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29242379 29242379]; doi: [https://dx.doi.org/10.1074/mcp.TIR117.000383 10.1074/mcp.TIR117.000383]; GPMDB: [http://gpmdb.org/data/keyword/29242379 121]. | ||
+ | #Müller AK, Föll M, Heckelmann B, Kiefer S, Werner M, Schilling O, Biniossek ML, Jilg CA, Drendel V, (2017) "Proteomic Characterization of Prostate Cancer to Distinguish Nonmetastasizing and Metastasizing Primary Tumors and Lymph Node Metastases." <i>Neoplasia</i> <b>20</b>(2):140–151; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29248718 29248718]; doi: [https://dx.doi.org/10.1016/j.neo.2017.10.009 10.1016/j.neo.2017.10.009]; GPMDB: [http://gpmdb.org/data/keyword/29248718 15]. | ||
+ | #Krogager TP, Ernst RJ, Elliott TS, Calo L, Beránek V, Ciabatti E, Spillantini MG, Tripodi M, Hastings MH, Chin JW, (2017) "Labeling and identifying cell-specific proteomes in the mouse brain." <i>Nat Biotechnol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29251727 29251727]; doi: [https://dx.doi.org/10.1038/nbt.4056 10.1038/nbt.4056]; GPMDB: [http://gpmdb.org/data/keyword/29251727 33]. | ||
+ | #Bielecka ZF, Malinowska A, Brodaczewska KK, Klemba A, Kieda C, Krasowski P, Grzesiuk E, Piwowarski J, Czarnecka AM, Szczylik C, (2017) "Hypoxic 3D in vitro culture models reveal distinct resistance processes to TKIs in renal cancer cells." <i>Cell Biosci</i> <b>7</b>:71; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29270287 29270287]; doi: [https://dx.doi.org/10.1186/s13578-017-0197-8 10.1186/s13578-017-0197-8]; GPMDB: [http://gpmdb.org/data/keyword/29270287 12]. | ||
+ | #Gao Y, Liu X, Tang B, Li C, Kou Z, Li L, Liu W, Wu Y, Kou X, Li J, Zhao Y, Yin J, Wang H, Chen S, Liao L, Gao S, (2017) "Protein Expression Landscape of Mouse Embryos during Pre-implantation Development." <i>Cell Rep</i> <b>21</b>(13):3957–3969; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29281840 29281840]; doi: [https://dx.doi.org/10.1016/j.celrep.2017.11.111 10.1016/j.celrep.2017.11.111]; GPMDB: [http://gpmdb.org/data/keyword/29281840 2]. | ||
+ | #Thriene K, Grüning BA, Bornert O, Erxleben A, Leppert J, Athanasiou I, Weber E, Kiritsi D, Nyström A, Reinheckel T, Backofen R, Has C, Bruckner-Tuderman L, Dengjel J, (2018) "Combinatorial omics analysis reveals perturbed lysosomal homeostasis in collagen VII-deficient keratinocytes." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29326176 29326176]; doi: [https://dx.doi.org/10.1074/mcp.RA117.000437 10.1074/mcp.RA117.000437]; GPMDB: [http://gpmdb.org/data/keyword/29326176 5]. |
GPMDB was originally constructed to serve as a reference work for all publicly available proteomics generated using tandem mass spectrometry. Public data is downloaded and reanalyzed using the current version of X! Tandem. The result files generated by the reanalysis and the relevant metadata are imported into the database and made available through the associated web site, ftp site and REST interfaces.
Contents |
The following public data repositories are checked daily for new suitable raw data for reanalysis:
Data made available from specific large projects, such as CPTAC or the Human Proteome Atlas, are also included when they are made available. Every effort is made so that reanalyzed results from all data sources are made available within 48 hours of their being released. In addition, data from lab web sites, ftp sites and direct contributions through the GPM sites made available to researchers are imported into GPMDB as part of a daily incremental update process.
GPMDB has been in operation since Jan. 1, 2004. Several large data source repositories have come into existence and ceased activity in the period since that time. All of the data from those repositories (e.g., TRANCHE, Peptidome) were reanalyzed and stored in GPMDB and they are still available even though the source repository sites are no longer active.
Simply because data is made available does not mean that it will be included in GPMDB. The data must be approved our quality control AI for its initial acceptance and it may be rejected subsequently because of either quality or originality concerns.
CAUTION: Many papers contain serious errors in their Methods sections. When using data from the literature, it is important to be skeptical of any experimental parameter (cell line, tissue type, modification reagents, quantitation methoods, etc.) that may impact on your use of the data. We have tried to correct any obvious errors, but there is no way to guarantee that we found them all. When attempting to analyze or reproduce results, keep in mind the likelyhood that even key parts of the experiment methods may have been recorded incorrectly in the associated manuscript, as methods are rarely reviewed properly in the current journal publication process.
The following is a list of data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list was current, as of Jan. 22, 2018.