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==Data from publications== | ==Data from publications== | ||
- | The following is a list of data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list was current, as of | + | The following is a list of data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list was current, as of February 3, 2018. |
#Lipton MS, Pasa-Tolic' L, Anderson GA, Anderson DJ, Auberry DL, Battista JR, Daly MJ, Fredrickson J, Hixson KK, Kostandarithes H, Masselon C, Markillie LM, Moore RJ, Romine MF, Shen Y, Stritmatter E, Tolic' N, Udseth HR, Venkateswaran A, Wong KK, Zhao R, Smith RD, (2002) "Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags." <i>Proc Natl Acad Sci U S A</i> <b>99</b>(17):11049–54; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/12177431 12177431]; doi: [https://dx.doi.org/10.1073/pnas.172170199 10.1073/pnas.172170199]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/12177431 498]. | #Lipton MS, Pasa-Tolic' L, Anderson GA, Anderson DJ, Auberry DL, Battista JR, Daly MJ, Fredrickson J, Hixson KK, Kostandarithes H, Masselon C, Markillie LM, Moore RJ, Romine MF, Shen Y, Stritmatter E, Tolic' N, Udseth HR, Venkateswaran A, Wong KK, Zhao R, Smith RD, (2002) "Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags." <i>Proc Natl Acad Sci U S A</i> <b>99</b>(17):11049–54; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/12177431 12177431]; doi: [https://dx.doi.org/10.1073/pnas.172170199 10.1073/pnas.172170199]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/12177431 498]. | ||
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#Lardi M, Aguilar C, Pedrioli A, Omasits U, Suppiger A, Cárcamo-Oyarce G, Schmid N, Ahrens CH, Eberl L, Pessi G, (2015) "σ54-Dependent Response to Nitrogen Limitation and Virulence in Burkholderia cenocepacia Strain H111." <i>Appl Environ Microbiol</i> <b>81</b>(12):4077–89; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25841012 25841012]; doi: [https://dx.doi.org/10.1128/AEM.00694-15 10.1128/AEM.00694-15]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25841012 40]. | #Lardi M, Aguilar C, Pedrioli A, Omasits U, Suppiger A, Cárcamo-Oyarce G, Schmid N, Ahrens CH, Eberl L, Pessi G, (2015) "σ54-Dependent Response to Nitrogen Limitation and Virulence in Burkholderia cenocepacia Strain H111." <i>Appl Environ Microbiol</i> <b>81</b>(12):4077–89; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25841012 25841012]; doi: [https://dx.doi.org/10.1128/AEM.00694-15 10.1128/AEM.00694-15]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25841012 40]. | ||
#Piersma SR, Knol JC, de Reus I, Labots M, Sampadi BK, Pham TV, Ishihama Y, Verheul HM, Jimenez CR, (2015) "Feasibility of label-free phosphoproteomics and application to base-line signaling of colorectal cancer cell lines." <i>J Proteomics</i> <b>127</b>(Pt B):247–58; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25841592 25841592]; doi: [https://dx.doi.org/10.1016/j.jprot.2015.03.019 10.1016/j.jprot.2015.03.019]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25841592 31]. | #Piersma SR, Knol JC, de Reus I, Labots M, Sampadi BK, Pham TV, Ishihama Y, Verheul HM, Jimenez CR, (2015) "Feasibility of label-free phosphoproteomics and application to base-line signaling of colorectal cancer cell lines." <i>J Proteomics</i> <b>127</b>(Pt B):247–58; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25841592 25841592]; doi: [https://dx.doi.org/10.1016/j.jprot.2015.03.019 10.1016/j.jprot.2015.03.019]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25841592 31]. | ||
- | #Krishnan RK, Nolte H, Sun T, Kaur H, Sreenivasan K, Looso M, Offermanns S, Krüger M, Swiercz JM, (2015) "Quantitative analysis of the TNF-α-induced phosphoproteome reveals AEG-1/MTDH/LYRIC as an IKKβ substrate." <i>Nat Commun</i> <b>6</b>:6658; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25849741 25849741]; doi: [https://dx.doi.org/10.1038/ncomms7658 10.1038/ncomms7658]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25849741 | + | #Krishnan RK, Nolte H, Sun T, Kaur H, Sreenivasan K, Looso M, Offermanns S, Krüger M, Swiercz JM, (2015) "Quantitative analysis of the TNF-α-induced phosphoproteome reveals AEG-1/MTDH/LYRIC as an IKKβ substrate." <i>Nat Commun</i> <b>6</b>:6658; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25849741 25849741]; doi: [https://dx.doi.org/10.1038/ncomms7658 10.1038/ncomms7658]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25849741 53]. |
#Krisp C, Yang H, van Soest R, Molloy MP, (2015) "Online Peptide fractionation using a multiphasic microfluidic liquid chromatography chip improves reproducibility and detection limits for quantitation in discovery and targeted proteomics." <i>Mol Cell Proteomics</i> <b>14</b>(6):1708–19; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25850434 25850434]; doi: [https://dx.doi.org/10.1074/mcp.M114.046425 10.1074/mcp.M114.046425]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25850434 12]. | #Krisp C, Yang H, van Soest R, Molloy MP, (2015) "Online Peptide fractionation using a multiphasic microfluidic liquid chromatography chip improves reproducibility and detection limits for quantitation in discovery and targeted proteomics." <i>Mol Cell Proteomics</i> <b>14</b>(6):1708–19; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25850434 25850434]; doi: [https://dx.doi.org/10.1074/mcp.M114.046425 10.1074/mcp.M114.046425]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25850434 12]. | ||
#Stuart SA, Houel S, Lee T, Wang N, Old WM, Ahn NG, (2015) "A Phosphoproteomic Comparison of B-RAFV600E and MKK1/2 Inhibitors in Melanoma Cells." <i>Mol Cell Proteomics</i> <b>14</b>(6):1599–615; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25850435 25850435]; doi: [https://dx.doi.org/10.1074/mcp.M114.047233 10.1074/mcp.M114.047233]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25850435 255]. | #Stuart SA, Houel S, Lee T, Wang N, Old WM, Ahn NG, (2015) "A Phosphoproteomic Comparison of B-RAFV600E and MKK1/2 Inhibitors in Melanoma Cells." <i>Mol Cell Proteomics</i> <b>14</b>(6):1599–615; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25850435 25850435]; doi: [https://dx.doi.org/10.1074/mcp.M114.047233 10.1074/mcp.M114.047233]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25850435 255]. | ||
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#Bullen JW, Tchernyshyov I, Holewinski RJ, DeVine L, Wu F, Venkatraman V, Kass DL, Cole RN, Van Eyk J, Semenza GL, (2016) "Protein kinase A-dependent phosphorylation stimulates the transcriptional activity of hypoxia-inducible factor 1." <i>Sci Signal</i> <b>9</b>(430):ra56; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27245613 27245613]; doi: [https://dx.doi.org/10.1126/scisignal.aaf0583 10.1126/scisignal.aaf0583]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27245613 14]. | #Bullen JW, Tchernyshyov I, Holewinski RJ, DeVine L, Wu F, Venkatraman V, Kass DL, Cole RN, Van Eyk J, Semenza GL, (2016) "Protein kinase A-dependent phosphorylation stimulates the transcriptional activity of hypoxia-inducible factor 1." <i>Sci Signal</i> <b>9</b>(430):ra56; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27245613 27245613]; doi: [https://dx.doi.org/10.1126/scisignal.aaf0583 10.1126/scisignal.aaf0583]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27245613 14]. | ||
#Patella F, Neilson LJ, Athineos D, Erami Z, Anderson KI, Blyth K, Ryan KM, Zanivan S, (2016) "In-Depth Proteomics Identifies a Role for Autophagy in Controlling Reactive Oxygen Species Mediated Endothelial Permeability." <i>J Proteome Res</i> <b>15</b>(7):2187–97; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27246970 27246970]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00166 10.1021/acs.jproteome.6b00166]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27246970 25]. | #Patella F, Neilson LJ, Athineos D, Erami Z, Anderson KI, Blyth K, Ryan KM, Zanivan S, (2016) "In-Depth Proteomics Identifies a Role for Autophagy in Controlling Reactive Oxygen Species Mediated Endothelial Permeability." <i>J Proteome Res</i> <b>15</b>(7):2187–97; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27246970 27246970]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00166 10.1021/acs.jproteome.6b00166]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27246970 25]. | ||
+ | #Rai AN, Thornton JA, Stokes J, Sunesara I, Swiatlo E, Nanduri B, (2016) "Polyamine transporter in Streptococcus pneumoniae is essential for evading early innate immune responses in pneumococcal pneumonia." <i>Sci Rep</i> <b>6</b>:26964; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27247105 27247105]; doi: [https://dx.doi.org/10.1038/srep26964 10.1038/srep26964]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27247105 21]. | ||
#Mertins P, Mani DR, Ruggles KV, Gillette MA, Clauser KR, Wang P, Wang X, Qiao JW, Cao S, Petralia F, Kawaler E, Mundt F, Krug K, Tu Z, Lei JT, Gatza ML, Wilkerson M, Perou CM, Yellapantula V, Huang KL, Lin C, McLellan MD, Yan P, Davies SR, Townsend RR, Skates SJ, Wang J, Zhang B, Kinsinger CR, Mesri M, Rodriguez H, Ding L, Paulovich AG, Fenyö D, Ellis MJ, Carr SA, NCI CPTAC., (2016) "Proteogenomics connects somatic mutations to signalling in breast cancer." <i>Nature</i> <b>534</b>(7605):55–62; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27251275 27251275]; doi: [https://dx.doi.org/10.1038/nature18003 10.1038/nature18003]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27251275 1265]. | #Mertins P, Mani DR, Ruggles KV, Gillette MA, Clauser KR, Wang P, Wang X, Qiao JW, Cao S, Petralia F, Kawaler E, Mundt F, Krug K, Tu Z, Lei JT, Gatza ML, Wilkerson M, Perou CM, Yellapantula V, Huang KL, Lin C, McLellan MD, Yan P, Davies SR, Townsend RR, Skates SJ, Wang J, Zhang B, Kinsinger CR, Mesri M, Rodriguez H, Ding L, Paulovich AG, Fenyö D, Ellis MJ, Carr SA, NCI CPTAC., (2016) "Proteogenomics connects somatic mutations to signalling in breast cancer." <i>Nature</i> <b>534</b>(7605):55–62; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27251275 27251275]; doi: [https://dx.doi.org/10.1038/nature18003 10.1038/nature18003]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27251275 1265]. | ||
#Humphrey ES, Su SP, Nagrial AM, Hochgräfe F, Pajic M, Lehrbach GM, Parton RG, Yap AS, Horvath LG, Chang DK, Biankin AV, Wu J, Daly RJ, (2016) "Resolution of Novel Pancreatic Ductal Adenocarcinoma Subtypes by Global Phosphotyrosine Profiling." <i>Mol Cell Proteomics</i> <b>15</b>(8):2671–85; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27259358 27259358]; doi: [https://dx.doi.org/10.1074/mcp.M116.058313 10.1074/mcp.M116.058313]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27259358 112]. | #Humphrey ES, Su SP, Nagrial AM, Hochgräfe F, Pajic M, Lehrbach GM, Parton RG, Yap AS, Horvath LG, Chang DK, Biankin AV, Wu J, Daly RJ, (2016) "Resolution of Novel Pancreatic Ductal Adenocarcinoma Subtypes by Global Phosphotyrosine Profiling." <i>Mol Cell Proteomics</i> <b>15</b>(8):2671–85; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27259358 27259358]; doi: [https://dx.doi.org/10.1074/mcp.M116.058313 10.1074/mcp.M116.058313]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27259358 112]. | ||
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#Castello A, Fischer B, Frese CK, Horos R, Alleaume AM, Foehr S, Curk T, Krijgsveld J, Hentze MW, (2016) "Comprehensive Identification of RNA-Binding Domains in Human Cells." <i>Mol Cell</i> <b>63</b>(4):696–710; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27453046 27453046]; doi: [https://dx.doi.org/10.1016/j.molcel.2016.06.029 10.1016/j.molcel.2016.06.029]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27453046 12]. | #Castello A, Fischer B, Frese CK, Horos R, Alleaume AM, Foehr S, Curk T, Krijgsveld J, Hentze MW, (2016) "Comprehensive Identification of RNA-Binding Domains in Human Cells." <i>Mol Cell</i> <b>63</b>(4):696–710; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27453046 27453046]; doi: [https://dx.doi.org/10.1016/j.molcel.2016.06.029 10.1016/j.molcel.2016.06.029]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27453046 12]. | ||
#Thomsen MS, Birkelund S, Burkhart A, Stensballe A, Moos T, (2016) "Synthesis and deposition of basement membrane proteins by primary brain capillary endothelial cells in a murine model of the blood-brain barrier." <i>J Neurochem</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27456748 27456748]; doi: [https://dx.doi.org/10.1111/jnc.13747 10.1111/jnc.13747]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27456748 12]. | #Thomsen MS, Birkelund S, Burkhart A, Stensballe A, Moos T, (2016) "Synthesis and deposition of basement membrane proteins by primary brain capillary endothelial cells in a murine model of the blood-brain barrier." <i>J Neurochem</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27456748 27456748]; doi: [https://dx.doi.org/10.1111/jnc.13747 10.1111/jnc.13747]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27456748 12]. | ||
+ | #Zhao Y, Tian B, Sadygov RG, Zhang Y, Brasier AR, (2016) "Integrative proteomic analysis reveals reprograming tumor necrosis factor signaling in epithelial mesenchymal transition." <i>J Proteomics</i> <b>148</b>:126–38; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27461979 27461979]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.07.014 10.1016/j.jprot.2016.07.014]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27461979 30]. | ||
#Osinalde N, Sanchez-Quiles V, Akimov V, Aloria K, Arizmendi JM, Blagoev B, Kratchmarova I, (2016) "Characterization of Receptor-Associated Protein Complex Assembly in Interleukin (IL)-2- and IL-15-Activated T-Cell Lines." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27463037 27463037]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00233 10.1021/acs.jproteome.6b00233]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27463037 55]. | #Osinalde N, Sanchez-Quiles V, Akimov V, Aloria K, Arizmendi JM, Blagoev B, Kratchmarova I, (2016) "Characterization of Receptor-Associated Protein Complex Assembly in Interleukin (IL)-2- and IL-15-Activated T-Cell Lines." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27463037 27463037]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00233 10.1021/acs.jproteome.6b00233]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27463037 55]. | ||
#Liu Z, Wang F, Chen J, Zhou Y, Zou H, (2016) "Modulating the selectivity of affinity absorbents to multi-phosphopeptides by a competitive substitution strategy." <i>J Chromatogr A</i> <b>1461</b>:35–41; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27470094 27470094]; doi: [https://dx.doi.org/10.1016/j.chroma.2016.07.042 10.1016/j.chroma.2016.07.042]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27470094 9]. | #Liu Z, Wang F, Chen J, Zhou Y, Zou H, (2016) "Modulating the selectivity of affinity absorbents to multi-phosphopeptides by a competitive substitution strategy." <i>J Chromatogr A</i> <b>1461</b>:35–41; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27470094 27470094]; doi: [https://dx.doi.org/10.1016/j.chroma.2016.07.042 10.1016/j.chroma.2016.07.042]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27470094 9]. | ||
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#Hesse AM, Dupierris V, Adam C, Court M, Barthe D, Emadali A, Masselon C, Ferro M, Bruley C, (2016) "hEIDI: An Intuitive Application Tool To Organize and Treat Large-Scale Proteomics Data." <i>J Proteome Res</i> <b>15</b>(10):3896–3903; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27560970 27560970]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00853 10.1021/acs.jproteome.5b00853]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27560970 142]. | #Hesse AM, Dupierris V, Adam C, Court M, Barthe D, Emadali A, Masselon C, Ferro M, Bruley C, (2016) "hEIDI: An Intuitive Application Tool To Organize and Treat Large-Scale Proteomics Data." <i>J Proteome Res</i> <b>15</b>(10):3896–3903; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27560970 27560970]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00853 10.1021/acs.jproteome.5b00853]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27560970 142]. | ||
#Ross SH, Rollings C, Anderson KE, Hawkins PT, Stephens LR, Cantrell DA, (2016) "Phosphoproteomic Analyses of Interleukin 2 Signaling Reveal Integrated JAK Kinase-Dependent and -Independent Networks in CD8(+) T Cells." <i>Immunity</i> <b>45</b>(3):685–700; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27566939 27566939]; doi: [https://dx.doi.org/10.1016/j.immuni.2016.07.022 10.1016/j.immuni.2016.07.022]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27566939 208]. | #Ross SH, Rollings C, Anderson KE, Hawkins PT, Stephens LR, Cantrell DA, (2016) "Phosphoproteomic Analyses of Interleukin 2 Signaling Reveal Integrated JAK Kinase-Dependent and -Independent Networks in CD8(+) T Cells." <i>Immunity</i> <b>45</b>(3):685–700; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27566939 27566939]; doi: [https://dx.doi.org/10.1016/j.immuni.2016.07.022 10.1016/j.immuni.2016.07.022]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27566939 208]. | ||
+ | #Moulos P, Samiotaki M, Panayotou G, Dedos SG, (2016) "Combinatory annotation of cell membrane receptors and signalling pathways of Bombyx mori prothoracic glands." <i>Sci Data</i> <b>3</b>:160073; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27576083 27576083]; doi: [https://dx.doi.org/10.1038/sdata.2016.73 10.1038/sdata.2016.73]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27576083 6]. | ||
#Larsen SC, Sylvestersen KB, Mund A, Lyon D, Mullari M, Madsen MV, Daniel JA, Jensen LJ, Nielsen ML, (2016) "Proteome-wide analysis of arginine monomethylation reveals widespread occurrence in human cells." <i>Sci Signal</i> <b>9</b>(443):rs9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27577262 27577262]; doi: [https://dx.doi.org/10.1126/scisignal.aaf7329 10.1126/scisignal.aaf7329]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27577262 10]. | #Larsen SC, Sylvestersen KB, Mund A, Lyon D, Mullari M, Madsen MV, Daniel JA, Jensen LJ, Nielsen ML, (2016) "Proteome-wide analysis of arginine monomethylation reveals widespread occurrence in human cells." <i>Sci Signal</i> <b>9</b>(443):rs9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27577262 27577262]; doi: [https://dx.doi.org/10.1126/scisignal.aaf7329 10.1126/scisignal.aaf7329]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27577262 10]. | ||
#Delaveau T, Davoine D, Jolly A, Vallot A, Rouvière JO, Gerber A, Brochet S, Plessis M, Roquigny R, Merhej J, Leger T, Garcia C, Lelandais G, Laine E, Palancade B, Devaux F, Garcia M, (2016) "Tma108, a putative M1 aminopeptidase, is a specific nascent chain-associated protein in Saccharomyces cerevisiae." <i>Nucleic Acids Res</i> <b>44</b>(18):8826–8841; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27580715 27580715]; doi: [https://dx.doi.org/10.1093/nar/gkw732 10.1093/nar/gkw732]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27580715 19]. | #Delaveau T, Davoine D, Jolly A, Vallot A, Rouvière JO, Gerber A, Brochet S, Plessis M, Roquigny R, Merhej J, Leger T, Garcia C, Lelandais G, Laine E, Palancade B, Devaux F, Garcia M, (2016) "Tma108, a putative M1 aminopeptidase, is a specific nascent chain-associated protein in Saccharomyces cerevisiae." <i>Nucleic Acids Res</i> <b>44</b>(18):8826–8841; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27580715 27580715]; doi: [https://dx.doi.org/10.1093/nar/gkw732 10.1093/nar/gkw732]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27580715 19]. | ||
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#St-Denis N, Gupta GD, Lin ZY, Gonzalez-Badillo B, Veri AO, Knight JD, Rajendran D, Couzens AL, Currie KW, Tkach JM, Cheung SW, Pelletier L, Gingras AC, (2016) "Phenotypic and Interaction Profiling of the Human Phosphatases Identifies Diverse Mitotic Regulators." <i>Cell Rep</i> <b>17</b>(9):2488–2501; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27880917 27880917]; doi: [https://dx.doi.org/10.1016/j.celrep.2016.10.078 10.1016/j.celrep.2016.10.078]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27880917 315]. | #St-Denis N, Gupta GD, Lin ZY, Gonzalez-Badillo B, Veri AO, Knight JD, Rajendran D, Couzens AL, Currie KW, Tkach JM, Cheung SW, Pelletier L, Gingras AC, (2016) "Phenotypic and Interaction Profiling of the Human Phosphatases Identifies Diverse Mitotic Regulators." <i>Cell Rep</i> <b>17</b>(9):2488–2501; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27880917 27880917]; doi: [https://dx.doi.org/10.1016/j.celrep.2016.10.078 10.1016/j.celrep.2016.10.078]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27880917 315]. | ||
#Sheppard C, Blombach F, Belsom A, Schulz S, Daviter T, Smollett K, Mahieu E, Erdmann S, Tinnefeld P, Garrett R, Grohmann D, Rappsilber J, Werner F, (2016) "Repression of RNA polymerase by the archaeo-viral regulator ORF145/RIP." <i>Nat Commun</i> <b>7</b>:13595; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27882920 27882920]; doi: [https://dx.doi.org/10.1038/ncomms13595 10.1038/ncomms13595]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27882920 9]. | #Sheppard C, Blombach F, Belsom A, Schulz S, Daviter T, Smollett K, Mahieu E, Erdmann S, Tinnefeld P, Garrett R, Grohmann D, Rappsilber J, Werner F, (2016) "Repression of RNA polymerase by the archaeo-viral regulator ORF145/RIP." <i>Nat Commun</i> <b>7</b>:13595; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27882920 27882920]; doi: [https://dx.doi.org/10.1038/ncomms13595 10.1038/ncomms13595]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27882920 9]. | ||
+ | #Mossina A, Lukas C, Merl-Pham J, Uhl FE, Mutze K, Schamberger A, Staab-Weijnitz C, Jia J, Yildirim AÖ, Königshoff M, Hauck SM, Eickelberg O, Meiners S, (2017) "Cigarette smoke alters the secretome of lung epithelial cells." <i>Proteomics</i> <b>17</b>(1-2):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27891773 27891773]; doi: [https://dx.doi.org/10.1002/pmic.201600243 10.1002/pmic.201600243]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27891773 24]. | ||
#Hurwitz SN, Rider MA, Bundy JL, Liu X, Singh RK, Meckes DG Jr, (2016) "Proteomic profiling of NCI-60 extracellular vesicles uncovers common protein cargo and cancer type-specific biomarkers." <i>Oncotarget</i> <b>7</b>(52):86999–87015; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27894104 27894104]; doi: [https://dx.doi.org/10.18632/oncotarget.13569 10.18632/oncotarget.13569]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27894104 898]. | #Hurwitz SN, Rider MA, Bundy JL, Liu X, Singh RK, Meckes DG Jr, (2016) "Proteomic profiling of NCI-60 extracellular vesicles uncovers common protein cargo and cancer type-specific biomarkers." <i>Oncotarget</i> <b>7</b>(52):86999–87015; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27894104 27894104]; doi: [https://dx.doi.org/10.18632/oncotarget.13569 10.18632/oncotarget.13569]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27894104 898]. | ||
#Gonneaud A, Jones C, Turgeon N, Lévesque D, Asselin C, Boudreau F, Boisvert FM, (2016) "A SILAC-Based Method for Quantitative Proteomic Analysis of Intestinal Organoids." <i>Sci Rep</i> <b>6</b>:38195; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27901089 27901089]; doi: [https://dx.doi.org/10.1038/srep38195 10.1038/srep38195]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27901089 38]. | #Gonneaud A, Jones C, Turgeon N, Lévesque D, Asselin C, Boudreau F, Boisvert FM, (2016) "A SILAC-Based Method for Quantitative Proteomic Analysis of Intestinal Organoids." <i>Sci Rep</i> <b>6</b>:38195; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27901089 27901089]; doi: [https://dx.doi.org/10.1038/srep38195 10.1038/srep38195]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27901089 38]. | ||
+ | #Song L, Wang F, Dong Z, Hua X, Xia Q, (2017) "Label-free quantitative phosphoproteomic profiling of cellular response induced by an insect cytokine paralytic peptide." <i>J Proteomics</i> <b>154</b>:49–58; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27903465 27903465]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.11.018 10.1016/j.jprot.2016.11.018]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27903465 6]. | ||
#Sundberg M, Strage EM, Bergquist J, Holst BS, Ramström M, (2016) "Quantitative and Selective Analysis of Feline Growth Related Proteins Using Parallel Reaction Monitoring High Resolution Mass Spectrometry." <i>PLoS One</i> <b>11</b>(12):e0167138; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27907059 27907059]; doi: [https://dx.doi.org/10.1371/journal.pone.0167138 10.1371/journal.pone.0167138]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27907059 3]. | #Sundberg M, Strage EM, Bergquist J, Holst BS, Ramström M, (2016) "Quantitative and Selective Analysis of Feline Growth Related Proteins Using Parallel Reaction Monitoring High Resolution Mass Spectrometry." <i>PLoS One</i> <b>11</b>(12):e0167138; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27907059 27907059]; doi: [https://dx.doi.org/10.1371/journal.pone.0167138 10.1371/journal.pone.0167138]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27907059 3]. | ||
#Tatham MH, Cole C, Scullion P, Wilkie R, Westwood NJ, Stark LA, Hay RT, (2016) "A proteomic approach to analyse the aspirin-mediated lysine acetylome." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27913581 27913581]; doi: [https://dx.doi.org/10.1074/mcp.O116.065219 10.1074/mcp.O116.065219]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27913581 40]. | #Tatham MH, Cole C, Scullion P, Wilkie R, Westwood NJ, Stark LA, Hay RT, (2016) "A proteomic approach to analyse the aspirin-mediated lysine acetylome." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27913581 27913581]; doi: [https://dx.doi.org/10.1074/mcp.O116.065219 10.1074/mcp.O116.065219]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27913581 40]. | ||
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#Kreutz D, Bileck A, Plessl K, Wolrab D, Groessl M, Keppler BK, Meier SM, Gerner C, (2016) "Response Profiling Using Shotgun Proteomics Enables Global Metallodrug Mechanisms of Action To Be Established." <i>Chemistry</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28071820 28071820]; doi: [https://dx.doi.org/10.1002/chem.201604516 10.1002/chem.201604516]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28071820 6]. | #Kreutz D, Bileck A, Plessl K, Wolrab D, Groessl M, Keppler BK, Meier SM, Gerner C, (2016) "Response Profiling Using Shotgun Proteomics Enables Global Metallodrug Mechanisms of Action To Be Established." <i>Chemistry</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28071820 28071820]; doi: [https://dx.doi.org/10.1002/chem.201604516 10.1002/chem.201604516]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28071820 6]. | ||
#Xing F, Luan Y, Cai J, Wu S, Mai J, Gu J, Zhang H, Li K, Lin Y, Xiao X, Liang J, Li Y, Chen W, Tan Y, Sheng L, Lu B, Lu W, Gao M, Qiu P, Su X, Yin W, Hu J, Chen Z, Sai K, Wang J, Chen F, Chen Y, Zhu S, Liu D, Cheng S, Xie Z, Zhu W, Yan G, (2017) "The Anti-Warburg Effect Elicited by the cAMP-PGC1α Pathway Drives Differentiation of Glioblastoma Cells into Astrocytes." <i>Cell Rep</i> <b>18</b>(2):468–481; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28076790 28076790]; doi: [https://dx.doi.org/10.1016/j.celrep.2016.12.037 10.1016/j.celrep.2016.12.037]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28076790 60]. | #Xing F, Luan Y, Cai J, Wu S, Mai J, Gu J, Zhang H, Li K, Lin Y, Xiao X, Liang J, Li Y, Chen W, Tan Y, Sheng L, Lu B, Lu W, Gao M, Qiu P, Su X, Yin W, Hu J, Chen Z, Sai K, Wang J, Chen F, Chen Y, Zhu S, Liu D, Cheng S, Xie Z, Zhu W, Yan G, (2017) "The Anti-Warburg Effect Elicited by the cAMP-PGC1α Pathway Drives Differentiation of Glioblastoma Cells into Astrocytes." <i>Cell Rep</i> <b>18</b>(2):468–481; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28076790 28076790]; doi: [https://dx.doi.org/10.1016/j.celrep.2016.12.037 10.1016/j.celrep.2016.12.037]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28076790 60]. | ||
+ | #Loroch S, Trabold K, Gambaryan S, Reiß C, Schwierczek K, Fleming I, Sickmann A, Behnisch W, Zieger B, Zahedi RP, Walter U, Jurk K, (2017) "Alterations of the platelet proteome in type I Glanzmann thrombasthenia caused by different homozygous delG frameshift mutations in ITGA2B." <i>Thromb Haemost</i> <b>117</b>(3):556–569; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28078347 28078347]; doi: [https://dx.doi.org/10.1160/TH16-07-0515 10.1160/TH16-07-0515]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28078347 20]. | ||
#Scott NE, Rogers LD, Prudova A, Brown NF, Fortelny N, Overall CM, Foster LJ, (2017) "Interactome disassembly during apoptosis occurs independent of caspase cleavage." <i>Mol Syst Biol</i> <b>13</b>(1):906; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28082348 28082348]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28082348 521]. | #Scott NE, Rogers LD, Prudova A, Brown NF, Fortelny N, Overall CM, Foster LJ, (2017) "Interactome disassembly during apoptosis occurs independent of caspase cleavage." <i>Mol Syst Biol</i> <b>13</b>(1):906; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28082348 28082348]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28082348 521]. | ||
#Emmott E, Sorgeloos F, Caddy SL, Vashist S, Sosnovtsev S, Lloyd R, Heesom K, Locker N, Goodfellow I, (2017) "Norovirus-mediated modification of the translational landscape via virus and host-induced cleavage of translation initiation factors." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28087593 28087593]; doi: [https://dx.doi.org/10.1074/mcp.M116.062448 10.1074/mcp.M116.062448]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28087593 3]. | #Emmott E, Sorgeloos F, Caddy SL, Vashist S, Sosnovtsev S, Lloyd R, Heesom K, Locker N, Goodfellow I, (2017) "Norovirus-mediated modification of the translational landscape via virus and host-induced cleavage of translation initiation factors." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28087593 28087593]; doi: [https://dx.doi.org/10.1074/mcp.M116.062448 10.1074/mcp.M116.062448]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28087593 3]. | ||
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#Badalato N, Guillot A, Sabarly V, Dubois M, Pourette N, Pontoire B, Robert P, Bridier A, Monnet V, Sousa DZ, Durand S, Mazéas L, Buléon A, Bouchez T, Mortha G, Bize A, (2017) "Whole Proteome Analyses on Ruminiclostridium cellulolyticum Show a Modulation of the Cellulolysis Machinery in Response to Cellulosic Materials with Subtle Differences in Chemical and Structural Properties." <i>PLoS One</i> <b>12</b>(1):e0170524; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28114419 28114419]; doi: [https://dx.doi.org/10.1371/journal.pone.0170524 10.1371/journal.pone.0170524]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28114419 24]. | #Badalato N, Guillot A, Sabarly V, Dubois M, Pourette N, Pontoire B, Robert P, Bridier A, Monnet V, Sousa DZ, Durand S, Mazéas L, Buléon A, Bouchez T, Mortha G, Bize A, (2017) "Whole Proteome Analyses on Ruminiclostridium cellulolyticum Show a Modulation of the Cellulolysis Machinery in Response to Cellulosic Materials with Subtle Differences in Chemical and Structural Properties." <i>PLoS One</i> <b>12</b>(1):e0170524; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28114419 28114419]; doi: [https://dx.doi.org/10.1371/journal.pone.0170524 10.1371/journal.pone.0170524]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28114419 24]. | ||
#Glisovic-Aplenc T, Gill S, Spruce LA, Smith IR, Fazelinia H, Shestova O, Ding H, Tasian SK, Aplenc R, Seeholzer SH, (2017) "Improved plasma membrane proteome coverage with a label-free non-affinity-purified workflow." <i>Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28116781 28116781]; doi: [https://dx.doi.org/10.1002/pmic.201600344 10.1002/pmic.201600344]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28116781 41]. | #Glisovic-Aplenc T, Gill S, Spruce LA, Smith IR, Fazelinia H, Shestova O, Ding H, Tasian SK, Aplenc R, Seeholzer SH, (2017) "Improved plasma membrane proteome coverage with a label-free non-affinity-purified workflow." <i>Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28116781 28116781]; doi: [https://dx.doi.org/10.1002/pmic.201600344 10.1002/pmic.201600344]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28116781 41]. | ||
+ | #Baker MS, Ahn SB, Mohamedali A, Islam MT, Cantor D, Verhaert PD, Fanayan S, Sharma S, Nice EC, Connor M, Ranganathan S, (2017) "Accelerating the search for the missing proteins in the human proteome." <i>Nat Commun</i> <b>8</b>:14271; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28117396 28117396]; doi: [https://dx.doi.org/10.1038/ncomms14271 10.1038/ncomms14271]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28117396 12]. | ||
#Kulak NA, Geyer PE, Mann M, (2017) "Loss-less nano-fractionator for high sensitivity, high coverage proteomics." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28126900 28126900]; doi: [https://dx.doi.org/10.1074/mcp.O116.065136 10.1074/mcp.O116.065136]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28126900 60]. | #Kulak NA, Geyer PE, Mann M, (2017) "Loss-less nano-fractionator for high sensitivity, high coverage proteomics." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28126900 28126900]; doi: [https://dx.doi.org/10.1074/mcp.O116.065136 10.1074/mcp.O116.065136]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28126900 60]. | ||
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#Lorenz C, Lesimple P, Bukowiecki R, Zink A, Inak G, Mlody B, Singh M, Semtner M, Mah N, Auré K, Leong M, Zabiegalov O, Lyras EM, Pfiffer V, Fauler B, Eichhorst J, Wiesner B, Huebner N, Priller J, Mielke T, Meierhofer D, Izsvák Z, Meier JC, Bouillaud F, Adjaye J, Schuelke M, Wanker EE, Lombès A, Prigione A, (2017) "Human iPSC-Derived Neural Progenitors Are an Effective Drug Discovery Model for Neurological mtDNA Disorders." <i>Cell Stem Cell</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28132834 28132834]; doi: [https://dx.doi.org/10.1016/j.stem.2016.12.013 10.1016/j.stem.2016.12.013]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28132834 14]. | #Lorenz C, Lesimple P, Bukowiecki R, Zink A, Inak G, Mlody B, Singh M, Semtner M, Mah N, Auré K, Leong M, Zabiegalov O, Lyras EM, Pfiffer V, Fauler B, Eichhorst J, Wiesner B, Huebner N, Priller J, Mielke T, Meierhofer D, Izsvák Z, Meier JC, Bouillaud F, Adjaye J, Schuelke M, Wanker EE, Lombès A, Prigione A, (2017) "Human iPSC-Derived Neural Progenitors Are an Effective Drug Discovery Model for Neurological mtDNA Disorders." <i>Cell Stem Cell</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28132834 28132834]; doi: [https://dx.doi.org/10.1016/j.stem.2016.12.013 10.1016/j.stem.2016.12.013]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28132834 14]. | ||
#Godfrey M, Touati SA, Kataria M, Jones A, Snijders AP, Uhlmann F, (2017) "PP2A<sup>Cdc55</sup> Phosphatase Imposes Ordered Cell-Cycle Phosphorylation by Opposing Threonine Phosphorylation." <i>Mol Cell</i> <b>65</b>(3):393–402.e3; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28132839 28132839]; doi: [https://dx.doi.org/10.1016/j.molcel.2016.12.018 10.1016/j.molcel.2016.12.018]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28132839 120]. | #Godfrey M, Touati SA, Kataria M, Jones A, Snijders AP, Uhlmann F, (2017) "PP2A<sup>Cdc55</sup> Phosphatase Imposes Ordered Cell-Cycle Phosphorylation by Opposing Threonine Phosphorylation." <i>Mol Cell</i> <b>65</b>(3):393–402.e3; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28132839 28132839]; doi: [https://dx.doi.org/10.1016/j.molcel.2016.12.018 10.1016/j.molcel.2016.12.018]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28132839 120]. | ||
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#Zolg DP, Wilhelm M, Schnatbaum K, Zerweck J, Knaute T, Delanghe B, Bailey DJ, Gessulat S, Ehrlich HC, Weininger M, Yu P, Schlegl J, Kramer K, Schmidt T, Kusebauch U, Deutsch EW, Aebersold R, Moritz RL, Wenschuh H, Moehring T, Aiche S, Huhmer A, Reimer U, Kuster B, (2017) "Building ProteomeTools based on a complete synthetic human proteome." <i>Nat Methods</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28135259 28135259]; doi: [https://dx.doi.org/10.1038/nmeth.4153 10.1038/nmeth.4153]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28135259 1095]. | #Zolg DP, Wilhelm M, Schnatbaum K, Zerweck J, Knaute T, Delanghe B, Bailey DJ, Gessulat S, Ehrlich HC, Weininger M, Yu P, Schlegl J, Kramer K, Schmidt T, Kusebauch U, Deutsch EW, Aebersold R, Moritz RL, Wenschuh H, Moehring T, Aiche S, Huhmer A, Reimer U, Kuster B, (2017) "Building ProteomeTools based on a complete synthetic human proteome." <i>Nat Methods</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28135259 28135259]; doi: [https://dx.doi.org/10.1038/nmeth.4153 10.1038/nmeth.4153]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28135259 1095]. | ||
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#Jung SY, Choi JM, Rousseaux MW, Malovannaya A, Kim JJ, Kutzera J, Wang Y, Huang Y, Zhu W, Maity S, Zoghbi HY, Qin J, (2017) "An anatomically resolved mouse brain proteome reveals Parkinson disease-relevant pathways." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28153913 28153913]; doi: [https://dx.doi.org/10.1074/mcp.M116.061440 10.1074/mcp.M116.061440]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28153913 610]. | #Jung SY, Choi JM, Rousseaux MW, Malovannaya A, Kim JJ, Kutzera J, Wang Y, Huang Y, Zhu W, Maity S, Zoghbi HY, Qin J, (2017) "An anatomically resolved mouse brain proteome reveals Parkinson disease-relevant pathways." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28153913 28153913]; doi: [https://dx.doi.org/10.1074/mcp.M116.061440 10.1074/mcp.M116.061440]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28153913 610]. | ||
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#Davis S, Charles PD, He L, Mowlds P, Kessler BM, Fischer R, (2017) "Expanding proteome coverage with CHarge Ordered Parallel Ion aNalysis (CHOPIN) combined with broad specificity proteolysis." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28164708 28164708]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00915 10.1021/acs.jproteome.6b00915]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28164708 7]. | #Davis S, Charles PD, He L, Mowlds P, Kessler BM, Fischer R, (2017) "Expanding proteome coverage with CHarge Ordered Parallel Ion aNalysis (CHOPIN) combined with broad specificity proteolysis." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28164708 28164708]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00915 10.1021/acs.jproteome.6b00915]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28164708 7]. | ||
#Petrovic V, Olaisen C, Sharma A, Nepal A, Bugge S, Sundby E, Hoff BH, Slupphaug G, Otterlei M, (2017) "On-column trypsinization allows for re-use of matrix in modified multiplexed inhibitor beads assay." <i>Anal Biochem</i> <b>523</b>:10–16; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28167071 28167071]; doi: [https://dx.doi.org/10.1016/j.ab.2017.01.027 10.1016/j.ab.2017.01.027]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28167071 3]. | #Petrovic V, Olaisen C, Sharma A, Nepal A, Bugge S, Sundby E, Hoff BH, Slupphaug G, Otterlei M, (2017) "On-column trypsinization allows for re-use of matrix in modified multiplexed inhibitor beads assay." <i>Anal Biochem</i> <b>523</b>:10–16; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28167071 28167071]; doi: [https://dx.doi.org/10.1016/j.ab.2017.01.027 10.1016/j.ab.2017.01.027]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28167071 3]. | ||
+ | #Worthington J, Spain G, Timms JF, (2017) "Effects of ErbB2 Overexpression on the Proteome and ErbB Ligand-specific Phosphosignaling in Mammary Luminal Epithelial Cells." <i>Mol Cell Proteomics</i> <b>16</b>(4):608–621; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28174229 28174229]; doi: [https://dx.doi.org/10.1074/mcp.M116.061267 10.1074/mcp.M116.061267]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28174229 190]. | ||
#Li X, Gao M, Choi JM, Kim BJ, Zhou MT, Chen Z, Jain AN, Jung SY, Yuan J, Wang W, Wang Y, Chen J, (2017) "CRISPR/Cas9-Coupled Affinity Purification/Mass Spectrometry Analysis Revealed a Novel Role of Neurofibromin in mTOR Signaling." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28174230 28174230]; doi: [https://dx.doi.org/10.1074/mcp.M116.064543 10.1074/mcp.M116.064543]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28174230 44]. | #Li X, Gao M, Choi JM, Kim BJ, Zhou MT, Chen Z, Jain AN, Jung SY, Yuan J, Wang W, Wang Y, Chen J, (2017) "CRISPR/Cas9-Coupled Affinity Purification/Mass Spectrometry Analysis Revealed a Novel Role of Neurofibromin in mTOR Signaling." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28174230 28174230]; doi: [https://dx.doi.org/10.1074/mcp.M116.064543 10.1074/mcp.M116.064543]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28174230 44]. | ||
#Kalkan T, Olova N, Roode M, Mulas C, Lee HJ, Nett I, Marks H, Walker R, Stunnenberg HG, Lilley KS, Nichols J, Reik W, Bertone P, Smith A, (2017) "Tracking the embryonic stem cell transition from ground state pluripotency." <i>Development</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28174249 28174249]; doi: [https://dx.doi.org/10.1242/dev.142711 10.1242/dev.142711]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28174249 24]. | #Kalkan T, Olova N, Roode M, Mulas C, Lee HJ, Nett I, Marks H, Walker R, Stunnenberg HG, Lilley KS, Nichols J, Reik W, Bertone P, Smith A, (2017) "Tracking the embryonic stem cell transition from ground state pluripotency." <i>Development</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28174249 28174249]; doi: [https://dx.doi.org/10.1242/dev.142711 10.1242/dev.142711]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28174249 24]. | ||
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#Perl K, Ushakov K, Pozniak Y, Yizhar-Barnea O, Bhonker Y, Shivatzki S, Geiger T, Avraham KB, Shamir R, (2017) "Reduced changes in protein compared to mRNA levels across non-proliferating tissues." <i>BMC Genomics</i> <b>18</b>(1):305; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28420336 28420336]; doi: [https://dx.doi.org/10.1186/s12864-017-3683-9 10.1186/s12864-017-3683-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28420336 6]. | #Perl K, Ushakov K, Pozniak Y, Yizhar-Barnea O, Bhonker Y, Shivatzki S, Geiger T, Avraham KB, Shamir R, (2017) "Reduced changes in protein compared to mRNA levels across non-proliferating tissues." <i>BMC Genomics</i> <b>18</b>(1):305; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28420336 28420336]; doi: [https://dx.doi.org/10.1186/s12864-017-3683-9 10.1186/s12864-017-3683-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28420336 6]. | ||
#Mendoza-Viveros L, Chiang CK, Ong JLK, Hegazi S, Cheng AH, Bouchard-Cannon P, Fana M, Lowden C, Zhang P, Bothorel B, Michniewicz MG, Magill ST, Holmes MM, Goodman RH, Simonneaux V, Figeys D, Cheng HM, (2017) "miR-132/212 Modulates Seasonal Adaptation and Dendritic Morphology of the Central Circadian Clock." <i>Cell Rep</i> <b>19</b>(3):505–520; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28423315 28423315]; doi: [https://dx.doi.org/10.1016/j.celrep.2017.03.057 10.1016/j.celrep.2017.03.057]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28423315 128]. | #Mendoza-Viveros L, Chiang CK, Ong JLK, Hegazi S, Cheng AH, Bouchard-Cannon P, Fana M, Lowden C, Zhang P, Bothorel B, Michniewicz MG, Magill ST, Holmes MM, Goodman RH, Simonneaux V, Figeys D, Cheng HM, (2017) "miR-132/212 Modulates Seasonal Adaptation and Dendritic Morphology of the Central Circadian Clock." <i>Cell Rep</i> <b>19</b>(3):505–520; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28423315 28423315]; doi: [https://dx.doi.org/10.1016/j.celrep.2017.03.057 10.1016/j.celrep.2017.03.057]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28423315 128]. | ||
+ | #Maus RLG, Jakub JW, Nevala WK, Christensen TA, Noble-Orcutt K, Sachs Z, Hieken TJ, Markovic SN, (2017) "Human Melanoma-Derived Extracellular Vesicles Regulate Dendritic Cell Maturation." <i>Front Immunol</i> <b>8</b>:358; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28424693 28424693]; doi: [https://dx.doi.org/10.3389/fimmu.2017.00358 10.3389/fimmu.2017.00358]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28424693 18]. | ||
#Treiber T, Treiber N, Plessmann U, Harlander S, Daiß JL, Eichner N, Lehmann G, Schall K, Urlaub H, Meister G, (2017) "A Compendium of RNA-Binding Proteins that Regulate MicroRNA Biogenesis." <i>Mol Cell</i> <b>66</b>(2):270–284.e13; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28431233 28431233]; doi: [https://dx.doi.org/10.1016/j.molcel.2017.03.014 10.1016/j.molcel.2017.03.014]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28431233 3033]. | #Treiber T, Treiber N, Plessmann U, Harlander S, Daiß JL, Eichner N, Lehmann G, Schall K, Urlaub H, Meister G, (2017) "A Compendium of RNA-Binding Proteins that Regulate MicroRNA Biogenesis." <i>Mol Cell</i> <b>66</b>(2):270–284.e13; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28431233 28431233]; doi: [https://dx.doi.org/10.1016/j.molcel.2017.03.014 10.1016/j.molcel.2017.03.014]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28431233 3033]. | ||
#Beyene GT, Kalayou S, Riaz T, Tonjum T, (2017) "Comparative proteomic analysis of Neisseria meningitidis wildtype and dprA null mutant strains links DNA processing to pilus biogenesis." <i>BMC Microbiol</i> <b>17</b>(1):96; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28431522 28431522]; doi: [https://dx.doi.org/10.1186/s12866-017-1004-8 10.1186/s12866-017-1004-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28431522 108]. | #Beyene GT, Kalayou S, Riaz T, Tonjum T, (2017) "Comparative proteomic analysis of Neisseria meningitidis wildtype and dprA null mutant strains links DNA processing to pilus biogenesis." <i>BMC Microbiol</i> <b>17</b>(1):96; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28431522 28431522]; doi: [https://dx.doi.org/10.1186/s12866-017-1004-8 10.1186/s12866-017-1004-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28431522 108]. | ||
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#Fijalkowska D, Verbruggen S, Ndah E, Jonckheere V, Menschaert G, Van Damme P, (2017) "eIF1 modulates the recognition of suboptimal translation initiation sites and steers gene expression via uORFs." <i>Nucleic Acids Res</i> <b>45</b>(13):7997–8013; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28541577 28541577]; doi: [https://dx.doi.org/10.1093/nar/gkx469 10.1093/nar/gkx469]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28541577 19]. | #Fijalkowska D, Verbruggen S, Ndah E, Jonckheere V, Menschaert G, Van Damme P, (2017) "eIF1 modulates the recognition of suboptimal translation initiation sites and steers gene expression via uORFs." <i>Nucleic Acids Res</i> <b>45</b>(13):7997–8013; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28541577 28541577]; doi: [https://dx.doi.org/10.1093/nar/gkx469 10.1093/nar/gkx469]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28541577 19]. | ||
#Hakimi O, Ternette N, Murphy R, Kessler BM, Carr A, (2017) "A quantitative label-free analysis of the extracellular proteome of human supraspinatus tendon reveals damage to the pericellular and elastic fibre niches in torn and aged tissue." <i>PLoS One</i> <b>12</b>(5):e0177656; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28542244 28542244]; doi: [https://dx.doi.org/10.1371/journal.pone.0177656 10.1371/journal.pone.0177656]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28542244 116]. | #Hakimi O, Ternette N, Murphy R, Kessler BM, Carr A, (2017) "A quantitative label-free analysis of the extracellular proteome of human supraspinatus tendon reveals damage to the pericellular and elastic fibre niches in torn and aged tissue." <i>PLoS One</i> <b>12</b>(5):e0177656; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28542244 28542244]; doi: [https://dx.doi.org/10.1371/journal.pone.0177656 10.1371/journal.pone.0177656]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28542244 116]. | ||
+ | #Wu PW, Mason KE, Durbin-Johnson BP, Salemi M, Phinney BS, Rocke DM, Parker GJ, Rice RH, (2017) "Proteomic analysis of hair shafts from monozygotic twins: Expression profiles and genetically variant peptides." <i>Proteomics</i> <b>17</b>(13-14):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28544375 28544375]; doi: [https://dx.doi.org/10.1002/pmic.201600462 10.1002/pmic.201600462]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28544375 24]. | ||
#Kume K, Cantwell H, Neumann FR, Jones AW, Snijders AP, Nurse P, (2017) "A systematic genomic screen implicates nucleocytoplasmic transport and membrane growth in nuclear size control." <i>PLoS Genet</i> <b>13</b>(5):e1006767; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28545058 28545058]; doi: [https://dx.doi.org/10.1371/journal.pgen.1006767 10.1371/journal.pgen.1006767]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28545058 192]. | #Kume K, Cantwell H, Neumann FR, Jones AW, Snijders AP, Nurse P, (2017) "A systematic genomic screen implicates nucleocytoplasmic transport and membrane growth in nuclear size control." <i>PLoS Genet</i> <b>13</b>(5):e1006767; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28545058 28545058]; doi: [https://dx.doi.org/10.1371/journal.pgen.1006767 10.1371/journal.pgen.1006767]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28545058 192]. | ||
#Meier SM, Kreutz D, Winter L, Klose MHM, Cseh K, Weiss T, Bileck A, Alte B, Mader JC, Jana S, Chatterjee A, Bhattacharyya A, Hejl M, Jakupec MA, Heffeter P, Berger W, Hartinger CG, Keppler BK, Wiche G, Gerner C, (2017) "An Organoruthenium Anticancer Agent Shows Unexpected Target Selectivity For Plectin." <i>Angew Chem Int Ed Engl</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28547791 28547791]; doi: [https://dx.doi.org/10.1002/anie.201702242 10.1002/anie.201702242]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28547791 4]. | #Meier SM, Kreutz D, Winter L, Klose MHM, Cseh K, Weiss T, Bileck A, Alte B, Mader JC, Jana S, Chatterjee A, Bhattacharyya A, Hejl M, Jakupec MA, Heffeter P, Berger W, Hartinger CG, Keppler BK, Wiche G, Gerner C, (2017) "An Organoruthenium Anticancer Agent Shows Unexpected Target Selectivity For Plectin." <i>Angew Chem Int Ed Engl</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28547791 28547791]; doi: [https://dx.doi.org/10.1002/anie.201702242 10.1002/anie.201702242]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28547791 4]. | ||
#Hou J, Li Z, Zhong W, Hao Q, Lei L, Wang L, Zhao D, Xu P, Zhou Y, Wang Y, Xu T, (2017) "Temporal Transcriptomic and Proteomic Landscapes of Deteriorating Pancreatic Islets in Type 2 Diabetic Rats." <i>Diabetes</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28559245 28559245]; doi: [https://dx.doi.org/10.2337/db16-1305 10.2337/db16-1305]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28559245 12]. | #Hou J, Li Z, Zhong W, Hao Q, Lei L, Wang L, Zhao D, Xu P, Zhou Y, Wang Y, Xu T, (2017) "Temporal Transcriptomic and Proteomic Landscapes of Deteriorating Pancreatic Islets in Type 2 Diabetic Rats." <i>Diabetes</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28559245 28559245]; doi: [https://dx.doi.org/10.2337/db16-1305 10.2337/db16-1305]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28559245 12]. | ||
+ | #Li JY, Cai F, Ye XG, Liang JS, Li JK, Wu MY, Zhao D, Jiang ZD, You ZY, Zhong BX, (2017) "Comparative Proteomic Analysis of Posterior Silk Glands of Wild and Domesticated Silkworms Reveals Functional Evolution during Domestication." <i>J Proteome Res</i> <b>16</b>(7):2495–2507; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28569067 28569067]; doi: [https://dx.doi.org/10.1021/acs.jproteome.7b00077 10.1021/acs.jproteome.7b00077]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28569067 72]. | ||
#Sanchez-Quiles V, Akimov V, Osinalde N, Francavilla C, Puglia M, Barrio-Hernandez I, Kratchmarova I, Olsen JV, Blagoev B, (2017) "CYLD deubiquitinase is necessary for proper ubiquitination and degradation of the epidermal growth factor receptor." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28572092 28572092]; doi: [https://dx.doi.org/10.1074/mcp.M116.066423 10.1074/mcp.M116.066423]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28572092 108]. | #Sanchez-Quiles V, Akimov V, Osinalde N, Francavilla C, Puglia M, Barrio-Hernandez I, Kratchmarova I, Olsen JV, Blagoev B, (2017) "CYLD deubiquitinase is necessary for proper ubiquitination and degradation of the epidermal growth factor receptor." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28572092 28572092]; doi: [https://dx.doi.org/10.1074/mcp.M116.066423 10.1074/mcp.M116.066423]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28572092 108]. | ||
#Bj Rås KØ, Sousa MML, Sharma A, Fonseca DM, S Gaard CK, Bj Rås M, Otterlei M, (2017) "Monitoring of the spatial and temporal dynamics of BER/SSBR pathway proteins, including MYH, UNG2, MPG, NTH1 and NEIL1-3, during DNA replication." <i>Nucleic Acids Res</i> <b>45</b>(14):8291–8301; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28575236 28575236]; doi: [https://dx.doi.org/10.1093/nar/gkx476 10.1093/nar/gkx476]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28575236 31]. | #Bj Rås KØ, Sousa MML, Sharma A, Fonseca DM, S Gaard CK, Bj Rås M, Otterlei M, (2017) "Monitoring of the spatial and temporal dynamics of BER/SSBR pathway proteins, including MYH, UNG2, MPG, NTH1 and NEIL1-3, during DNA replication." <i>Nucleic Acids Res</i> <b>45</b>(14):8291–8301; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28575236 28575236]; doi: [https://dx.doi.org/10.1093/nar/gkx476 10.1093/nar/gkx476]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28575236 31]. | ||
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#Sung E, Kwon OK, Lee JM, Lee S, (2017) "Proteomics approach to identify novel metastatic bone markers from the secretome of PC-3 prostate cancer cells." <i>Electrophoresis</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28627741 28627741]; doi: [https://dx.doi.org/10.1002/elps.201700052 10.1002/elps.201700052]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28627741 2]. | #Sung E, Kwon OK, Lee JM, Lee S, (2017) "Proteomics approach to identify novel metastatic bone markers from the secretome of PC-3 prostate cancer cells." <i>Electrophoresis</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28627741 28627741]; doi: [https://dx.doi.org/10.1002/elps.201700052 10.1002/elps.201700052]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28627741 2]. | ||
#Loke I, Østergaard O, Heegaard NHH, Packer NH, Thaysen-Andersen M, (2017) "Paucimannose-Rich <i>N</i>-glycosylation of Spatiotemporally Regulated Human Neutrophil Elastase Modulates Its Immune Functions." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28630087 28630087]; doi: [https://dx.doi.org/10.1074/mcp.M116.066746 10.1074/mcp.M116.066746]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28630087 118]. | #Loke I, Østergaard O, Heegaard NHH, Packer NH, Thaysen-Andersen M, (2017) "Paucimannose-Rich <i>N</i>-glycosylation of Spatiotemporally Regulated Human Neutrophil Elastase Modulates Its Immune Functions." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28630087 28630087]; doi: [https://dx.doi.org/10.1074/mcp.M116.066746 10.1074/mcp.M116.066746]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28630087 118]. | ||
+ | #Ahsan N, Belmont J, Chen Z, Clifton JG, Salomon AR, (2017) "Highly reproducible improved label-free quantitative analysis of cellular phosphoproteome by optimization of LC-MS/MS gradient and analytical column construction." <i>J Proteomics</i> <b>165</b>:69–74; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28634120 28634120]; doi: [https://dx.doi.org/10.1016/j.jprot.2017.06.013 10.1016/j.jprot.2017.06.013]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28634120 30]. | ||
#Feil G, Horres R, Schulte J, Mack AF, Petzoldt S, Arnold C, Meng C, Jost L, Boxleitner J, Kiessling-Wolf N, Serbest E, Helm D, Kuster B, Hartmann I, Korff T, Hahne H, (2017) "Bacterial cellulose shifts transcriptome and proteome of cultured endothelial cells towards native differentiation." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28637836 28637836]; doi: [https://dx.doi.org/10.1074/mcp.RA117.000001 10.1074/mcp.RA117.000001]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28637836 2]. | #Feil G, Horres R, Schulte J, Mack AF, Petzoldt S, Arnold C, Meng C, Jost L, Boxleitner J, Kiessling-Wolf N, Serbest E, Helm D, Kuster B, Hartmann I, Korff T, Hahne H, (2017) "Bacterial cellulose shifts transcriptome and proteome of cultured endothelial cells towards native differentiation." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28637836 28637836]; doi: [https://dx.doi.org/10.1074/mcp.RA117.000001 10.1074/mcp.RA117.000001]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28637836 2]. | ||
#Cosme J, Guo H, Hadipour-Lakmehsari S, Emili A, Gramolini AO, (2017) "Hypoxia-Induced Changes in the Fibroblast Secretome, Exosome, and Whole-Cell Proteome Using Cultured, Cardiac-Derived Cells Isolated from Neonatal Mice." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28641008 28641008]; doi: [https://dx.doi.org/10.1021/acs.jproteome.7b00144 10.1021/acs.jproteome.7b00144]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28641008 39]. | #Cosme J, Guo H, Hadipour-Lakmehsari S, Emili A, Gramolini AO, (2017) "Hypoxia-Induced Changes in the Fibroblast Secretome, Exosome, and Whole-Cell Proteome Using Cultured, Cardiac-Derived Cells Isolated from Neonatal Mice." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28641008 28641008]; doi: [https://dx.doi.org/10.1021/acs.jproteome.7b00144 10.1021/acs.jproteome.7b00144]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28641008 39]. | ||
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#Karg E, Smets M, Ryan J, Forné I, Qin W, Mulholland CB, Kalideris G, Imhof A, Bultmann S, Leonhardt H, (2017) "Ubiquitome analysis reveals PCNA-associated factor 15 (PAF15) as a specific ubiquitination target of UHRF1 in embryonic stem cells." <i>J Mol Biol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29055779 29055779]; doi: [https://dx.doi.org/10.1016/j.jmb.2017.10.014 10.1016/j.jmb.2017.10.014]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29055779 32]. | #Karg E, Smets M, Ryan J, Forné I, Qin W, Mulholland CB, Kalideris G, Imhof A, Bultmann S, Leonhardt H, (2017) "Ubiquitome analysis reveals PCNA-associated factor 15 (PAF15) as a specific ubiquitination target of UHRF1 in embryonic stem cells." <i>J Mol Biol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29055779 29055779]; doi: [https://dx.doi.org/10.1016/j.jmb.2017.10.014 10.1016/j.jmb.2017.10.014]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29055779 32]. | ||
#Hartl M, Füßl M, Boersema PJ, Jost JO, Kramer K, Bakirbas A, Sindlinger J, Plöchinger M, Leister D, Uhrig G, Moorhead GB, Cox J, Salvucci ME, Schwarzer D, Mann M, Finkemeier I, (2017) "Lysine acetylome profiling uncovers novel histone deacetylase substrate proteins in <i>Arabidopsis</i>." <i>Mol Syst Biol</i> <b>13</b>(10):949; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29061669 29061669]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29061669 44]. | #Hartl M, Füßl M, Boersema PJ, Jost JO, Kramer K, Bakirbas A, Sindlinger J, Plöchinger M, Leister D, Uhrig G, Moorhead GB, Cox J, Salvucci ME, Schwarzer D, Mann M, Finkemeier I, (2017) "Lysine acetylome profiling uncovers novel histone deacetylase substrate proteins in <i>Arabidopsis</i>." <i>Mol Syst Biol</i> <b>13</b>(10):949; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29061669 29061669]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29061669 44]. | ||
+ | #Graham LC, Eaton SL, Brunton PJ, Atrih A, Smith C, Lamont DJ, Gillingwater TH, Pennetta G, Skehel P, Wishart TM, (2017) "Proteomic profiling of neuronal mitochondria reveals modulators of synaptic architecture." <i>Mol Neurodegener</i> <b>12</b>(1):77; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29078798 29078798]; doi: [https://dx.doi.org/10.1186/s13024-017-0221-9 10.1186/s13024-017-0221-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29078798 6]. | ||
#Pan D, Gao J, Zeng X, Ma G, Li N, Huang X, Du X, Miao Q, Lian J, Xu L, Zhou H, Chen S, (2017) "Quantitative proteomic Analysis Reveals up-regulation of caveolin-1 in FOXP3-overexpressed human gastric cancer cells." <i>Sci Rep</i> <b>7</b>(1):14460; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29089565 29089565]; doi: [https://dx.doi.org/10.1038/s41598-017-14453-2 10.1038/s41598-017-14453-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29089565 10]. | #Pan D, Gao J, Zeng X, Ma G, Li N, Huang X, Du X, Miao Q, Lian J, Xu L, Zhou H, Chen S, (2017) "Quantitative proteomic Analysis Reveals up-regulation of caveolin-1 in FOXP3-overexpressed human gastric cancer cells." <i>Sci Rep</i> <b>7</b>(1):14460; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29089565 29089565]; doi: [https://dx.doi.org/10.1038/s41598-017-14453-2 10.1038/s41598-017-14453-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29089565 10]. | ||
#Schuster H, Peper JK, Bösmüller HC, Röhle K, Backert L, Bilich T, Ney B, Löffler MW, Kowalewski DJ, Trautwein N, Rabsteyn A, Engler T, Braun S, Haen SP, Walz JS, Schmid-Horch B, Brucker SY, Wallwiener D, Kohlbacher O, Fend F, Rammensee HG, Stevanović S, Staebler A, Wagner P, (2017) "The immunopeptidomic landscape of ovarian carcinomas." <i>Proc Natl Acad Sci U S A</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29093164 29093164]; doi: [https://dx.doi.org/10.1073/pnas.1707658114 10.1073/pnas.1707658114]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29093164 275]. | #Schuster H, Peper JK, Bösmüller HC, Röhle K, Backert L, Bilich T, Ney B, Löffler MW, Kowalewski DJ, Trautwein N, Rabsteyn A, Engler T, Braun S, Haen SP, Walz JS, Schmid-Horch B, Brucker SY, Wallwiener D, Kohlbacher O, Fend F, Rammensee HG, Stevanović S, Staebler A, Wagner P, (2017) "The immunopeptidomic landscape of ovarian carcinomas." <i>Proc Natl Acad Sci U S A</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29093164 29093164]; doi: [https://dx.doi.org/10.1073/pnas.1707658114 10.1073/pnas.1707658114]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29093164 275]. | ||
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#Cherry JD, Zeineddin A, Dammer EB, Webster JA, Duong D, Seyfried NT, Levey AI, Alvarez VE, Huber BR, Stein TD, Kiernan PT, McKee AC, Lah JJ, Hales CM, (2017) "Characterization of Detergent Insoluble Proteome in Chronic Traumatic Encephalopathy." <i>J Neuropathol Exp Neurol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29145658 29145658]; doi: [https://dx.doi.org/10.1093/jnen/nlx100 10.1093/jnen/nlx100]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29145658 4]. | #Cherry JD, Zeineddin A, Dammer EB, Webster JA, Duong D, Seyfried NT, Levey AI, Alvarez VE, Huber BR, Stein TD, Kiernan PT, McKee AC, Lah JJ, Hales CM, (2017) "Characterization of Detergent Insoluble Proteome in Chronic Traumatic Encephalopathy." <i>J Neuropathol Exp Neurol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29145658 29145658]; doi: [https://dx.doi.org/10.1093/jnen/nlx100 10.1093/jnen/nlx100]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29145658 4]. | ||
#Le Guerroué F, Eck F, Jung J, Starzetz T, Mittelbronn M, Kaulich M, Behrends C, (2017) "Autophagosomal Content Profiling Reveals an LC3C-Dependent Piecemeal Mitophagy Pathway." <i>Mol Cell</i> <b>68</b>(4):786–796.e6; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29149599 29149599]; doi: [https://dx.doi.org/10.1016/j.molcel.2017.10.029 10.1016/j.molcel.2017.10.029]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29149599 138]. | #Le Guerroué F, Eck F, Jung J, Starzetz T, Mittelbronn M, Kaulich M, Behrends C, (2017) "Autophagosomal Content Profiling Reveals an LC3C-Dependent Piecemeal Mitophagy Pathway." <i>Mol Cell</i> <b>68</b>(4):786–796.e6; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29149599 29149599]; doi: [https://dx.doi.org/10.1016/j.molcel.2017.10.029 10.1016/j.molcel.2017.10.029]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29149599 138]. | ||
+ | #Hu D, Xue S, Zhao C, Wei M, Yan H, Quan Y, Yu W, (2018) "Comprehensive Profiling of Lysine Acetylome in Baculovirus Infected Silkworm (Bombyx mori) Cells." <i>Proteomics</i> <b>18</b>(1):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29150924 29150924]; doi: [https://dx.doi.org/10.1002/pmic.201700133 10.1002/pmic.201700133]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29150924 8]. | ||
#Korkmaz AG, Popov T, Peisl L, Codrea MC, Nahnsen S, Steimle A, Velic A, Macek B, von Bergen M, Bernhardt J, Frick JS, (2017) "Proteome and phosphoproteome analysis of commensally induced dendritic cell maturation states." <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29155090 29155090]; doi: [https://dx.doi.org/10.1016/j.jprot.2017.11.008 10.1016/j.jprot.2017.11.008]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29155090 21]. | #Korkmaz AG, Popov T, Peisl L, Codrea MC, Nahnsen S, Steimle A, Velic A, Macek B, von Bergen M, Bernhardt J, Frick JS, (2017) "Proteome and phosphoproteome analysis of commensally induced dendritic cell maturation states." <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29155090 29155090]; doi: [https://dx.doi.org/10.1016/j.jprot.2017.11.008 10.1016/j.jprot.2017.11.008]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29155090 21]. | ||
#Föll MC, Fahrner M, Gretzmeier C, Thoma K, Biniossek ML, Kiritsi D, Meiss F, Schilling O, Nyström A, Kern JS, (2017) "Identification of tissue damage, extracellular matrix remodeling and bacterial challenge as common mechanisms associated with high-risk cutaneous squamous cell carcinomas." <i>Matrix Biol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29158163 29158163]; doi: [https://dx.doi.org/10.1016/j.matbio.2017.11.004 10.1016/j.matbio.2017.11.004]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29158163 24]. | #Föll MC, Fahrner M, Gretzmeier C, Thoma K, Biniossek ML, Kiritsi D, Meiss F, Schilling O, Nyström A, Kern JS, (2017) "Identification of tissue damage, extracellular matrix remodeling and bacterial challenge as common mechanisms associated with high-risk cutaneous squamous cell carcinomas." <i>Matrix Biol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29158163 29158163]; doi: [https://dx.doi.org/10.1016/j.matbio.2017.11.004 10.1016/j.matbio.2017.11.004]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29158163 24]. | ||
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#Bizzotto S, Uzquiano A, Dingli F, Ershov D, Houllier A, Arras G, Richards M, Loew D, Minc N, Croquelois A, Houdusse A, Francis F, (2017) "Eml1 loss impairs apical progenitor spindle length and soma shape in the developing cerebral cortex." <i>Sci Rep</i> <b>7</b>(1):17308; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29229923 29229923]; doi: [https://dx.doi.org/10.1038/s41598-017-15253-4 10.1038/s41598-017-15253-4]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29229923 28]. | #Bizzotto S, Uzquiano A, Dingli F, Ershov D, Houllier A, Arras G, Richards M, Loew D, Minc N, Croquelois A, Houdusse A, Francis F, (2017) "Eml1 loss impairs apical progenitor spindle length and soma shape in the developing cerebral cortex." <i>Sci Rep</i> <b>7</b>(1):17308; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29229923 29229923]; doi: [https://dx.doi.org/10.1038/s41598-017-15253-4 10.1038/s41598-017-15253-4]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29229923 28]. | ||
#Alli-Shaik A, Wee S, Lim LHK, Gunaratne J, (2017) "Phosphoproteomics reveals network rewiring to a pro-adhesion state in annexin-1-deficient mammary epithelial cells." <i>Breast Cancer Res</i> <b>19</b>(1):132; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29233185 29233185]; doi: [https://dx.doi.org/10.1186/s13058-017-0924-4 10.1186/s13058-017-0924-4]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29233185 263]. | #Alli-Shaik A, Wee S, Lim LHK, Gunaratne J, (2017) "Phosphoproteomics reveals network rewiring to a pro-adhesion state in annexin-1-deficient mammary epithelial cells." <i>Breast Cancer Res</i> <b>19</b>(1):132; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29233185 29233185]; doi: [https://dx.doi.org/10.1186/s13058-017-0924-4 10.1186/s13058-017-0924-4]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29233185 263]. | ||
+ | #Maumus M, Manferdini C, Toupet K, Chuchana P, Casteilla L, Gachet M, Jorgensen C, Lisignoli G, Noël D, (2017) "Thrombospondin-1 Partly Mediates the Cartilage Protective Effect of Adipose-Derived Mesenchymal Stem Cells in Osteoarthritis." <i>Front Immunol</i> <b>8</b>:1638; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29238343 29238343]; doi: [https://dx.doi.org/10.3389/fimmu.2017.01638 10.3389/fimmu.2017.01638]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29238343 120]. | ||
#Chong C, Marino F, Pak HS, Racle J, Daniel RT, Müller M, Gfeller D, Coukos G, Bassani-Sternberg M, (2017) "High-throughput and sensitive immunopeptidomics platform reveals profound IFNγ-mediated remodeling of the HLA ligandome." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29242379 29242379]; doi: [https://dx.doi.org/10.1074/mcp.TIR117.000383 10.1074/mcp.TIR117.000383]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29242379 121]. | #Chong C, Marino F, Pak HS, Racle J, Daniel RT, Müller M, Gfeller D, Coukos G, Bassani-Sternberg M, (2017) "High-throughput and sensitive immunopeptidomics platform reveals profound IFNγ-mediated remodeling of the HLA ligandome." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29242379 29242379]; doi: [https://dx.doi.org/10.1074/mcp.TIR117.000383 10.1074/mcp.TIR117.000383]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29242379 121]. | ||
#Müller AK, Föll M, Heckelmann B, Kiefer S, Werner M, Schilling O, Biniossek ML, Jilg CA, Drendel V, (2017) "Proteomic Characterization of Prostate Cancer to Distinguish Nonmetastasizing and Metastasizing Primary Tumors and Lymph Node Metastases." <i>Neoplasia</i> <b>20</b>(2):140–151; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29248718 29248718]; doi: [https://dx.doi.org/10.1016/j.neo.2017.10.009 10.1016/j.neo.2017.10.009]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29248718 15]. | #Müller AK, Föll M, Heckelmann B, Kiefer S, Werner M, Schilling O, Biniossek ML, Jilg CA, Drendel V, (2017) "Proteomic Characterization of Prostate Cancer to Distinguish Nonmetastasizing and Metastasizing Primary Tumors and Lymph Node Metastases." <i>Neoplasia</i> <b>20</b>(2):140–151; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29248718 29248718]; doi: [https://dx.doi.org/10.1016/j.neo.2017.10.009 10.1016/j.neo.2017.10.009]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29248718 15]. | ||
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#Chen JT, Liu CC, Yu JS, Li HH, Lai MC, (2018) "Integrated omics profiling identifies hypoxia-regulated genes in HCT116 colon cancer cells." <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29524648 29524648]; doi: [https://dx.doi.org/10.1016/j.jprot.2018.02.031 10.1016/j.jprot.2018.02.031]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29524648 4]. | #Chen JT, Liu CC, Yu JS, Li HH, Lai MC, (2018) "Integrated omics profiling identifies hypoxia-regulated genes in HCT116 colon cancer cells." <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29524648 29524648]; doi: [https://dx.doi.org/10.1016/j.jprot.2018.02.031 10.1016/j.jprot.2018.02.031]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29524648 4]. | ||
#Deeke SA, Starr AE, Ning Z, Ahmadi S, Zhang X, Mayne J, Chiang CK, Singleton R, Benchimol EI, Mack DR, Stintzi A, Figeys D, (2018) "Mucosal-luminal interface proteomics reveals biomarkers of pediatric inflammatory bowel disease-associated colitis." <i>Am J Gastroenterol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29531307 29531307]; doi: [https://dx.doi.org/10.1038/s41395-018-0024-9 10.1038/s41395-018-0024-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29531307 112]. | #Deeke SA, Starr AE, Ning Z, Ahmadi S, Zhang X, Mayne J, Chiang CK, Singleton R, Benchimol EI, Mack DR, Stintzi A, Figeys D, (2018) "Mucosal-luminal interface proteomics reveals biomarkers of pediatric inflammatory bowel disease-associated colitis." <i>Am J Gastroenterol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29531307 29531307]; doi: [https://dx.doi.org/10.1038/s41395-018-0024-9 10.1038/s41395-018-0024-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29531307 112]. | ||
+ | #Costanza B, Turtoi A, Bellahcène A, Hirano T, Peulen O, Blomme A, Hennequière V, Mutijima E, Boniver J, Meuwis MA, Josse C, Koopmansch B, Segers K, Yokobori T, Fahmy K, Thiry M, Coimbra C, Garbacki N, Colige A, Baiwir D, Bours V, Louis E, Detry O, Delvenne P, Nishiyama M, Castronovo V, (2018) "Innovative methodology for the identification of soluble biomarkers in fresh tissues." <i>Oncotarget</i> <b>9</b>(12):10665–10680; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29535834 29535834]; doi: [https://dx.doi.org/10.18632/oncotarget.24366 10.18632/oncotarget.24366]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29535834 15]. | ||
#Zila N, Bileck A, Muqaku B, Janker L, Eichhoff OM, Cheng PF, Dummer R, Levesque MP, Gerner C, Paulitschke V, (2018) "Proteomics-based insights into mitogen-activated protein kinase inhibitor resistance of cerebral melanoma metastases." <i>Clin Proteomics</i> <b>15</b>:13; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29541007 29541007]; doi: [https://dx.doi.org/10.1186/s12014-018-9189-x 10.1186/s12014-018-9189-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29541007 36]. | #Zila N, Bileck A, Muqaku B, Janker L, Eichhoff OM, Cheng PF, Dummer R, Levesque MP, Gerner C, Paulitschke V, (2018) "Proteomics-based insights into mitogen-activated protein kinase inhibitor resistance of cerebral melanoma metastases." <i>Clin Proteomics</i> <b>15</b>:13; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29541007 29541007]; doi: [https://dx.doi.org/10.1186/s12014-018-9189-x 10.1186/s12014-018-9189-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29541007 36]. | ||
#Savitski MM, Zinn N, Faelth-Savitski M, Poeckel D, Gade S, Becher I, Muelbaier M, Wagner AJ, Strohmer K, Werner T, Melchert S, Petretich M, Rutkowska A, Vappiani J, Franken H, Steidel M, Sweetman GM, Gilan O, Lam EYN, Dawson MA, Prinjha RK, Grandi P, Bergamini G, Bantscheff M, (2018) "Multiplexed Proteome Dynamics Profiling Reveals Mechanisms Controlling Protein Homeostasis." <i>Cell</i> <b>173</b>(1):260–274.e25; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29551266 29551266]; doi: [https://dx.doi.org/10.1016/j.cell.2018.02.030 10.1016/j.cell.2018.02.030]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29551266 5]. | #Savitski MM, Zinn N, Faelth-Savitski M, Poeckel D, Gade S, Becher I, Muelbaier M, Wagner AJ, Strohmer K, Werner T, Melchert S, Petretich M, Rutkowska A, Vappiani J, Franken H, Steidel M, Sweetman GM, Gilan O, Lam EYN, Dawson MA, Prinjha RK, Grandi P, Bergamini G, Bantscheff M, (2018) "Multiplexed Proteome Dynamics Profiling Reveals Mechanisms Controlling Protein Homeostasis." <i>Cell</i> <b>173</b>(1):260–274.e25; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29551266 29551266]; doi: [https://dx.doi.org/10.1016/j.cell.2018.02.030 10.1016/j.cell.2018.02.030]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29551266 5]. | ||
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#Bostanci N, Selevsek N, Wolski W, Grossmann J, Bao K, Wahlander A, Trachsel C, Schlapbach R, Özturk VÖ, Afacan B, Emingil G, Belibasakis GN, (2018) "Targeted proteomics guided by label-free global proteome analysis in saliva reveal transition signatures from health to periodontal disease." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29610270 29610270]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000718 10.1074/mcp.RA118.000718]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29610270 54]. | #Bostanci N, Selevsek N, Wolski W, Grossmann J, Bao K, Wahlander A, Trachsel C, Schlapbach R, Özturk VÖ, Afacan B, Emingil G, Belibasakis GN, (2018) "Targeted proteomics guided by label-free global proteome analysis in saliva reveal transition signatures from health to periodontal disease." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29610270 29610270]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000718 10.1074/mcp.RA118.000718]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29610270 54]. | ||
#Sipilä KH, Drushinin K, Rappu P, Jokinen J, Salminen TA, Salo AM, Käpylä J, Myllyharju J, Heino J, (2018) "Proline hydroxylation in collagen supports integrin binding by two distinct mechanisms." <i>J Biol Chem</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29615493 29615493]; doi: [https://dx.doi.org/10.1074/jbc.RA118.002200 10.1074/jbc.RA118.002200]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29615493 54]. | #Sipilä KH, Drushinin K, Rappu P, Jokinen J, Salminen TA, Salo AM, Käpylä J, Myllyharju J, Heino J, (2018) "Proline hydroxylation in collagen supports integrin binding by two distinct mechanisms." <i>J Biol Chem</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29615493 29615493]; doi: [https://dx.doi.org/10.1074/jbc.RA118.002200 10.1074/jbc.RA118.002200]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29615493 54]. | ||
+ | #Lobas AA, Pyatnitskiy MA, Chernobrovkin AL, Ilina IY, Karpov DS, Solovyeva EM, Kuznetsova KG, Ivanov MV, Lyssuk EY, Kliuchnikova AA, Voronko OE, Larin SS, Zubarev RA, Gorshkov MV, Moshkovskii SA, (2018) "Proteogenomics of Malignant Melanoma Cell Lines: The Effect of Stringency of Exome Data Filtering on Variant Peptide Identification in Shotgun Proteomics." <i>J Proteome Res</i> <b>17</b>(5):1801–1811; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29619825 29619825]; doi: [https://dx.doi.org/10.1021/acs.jproteome.7b00841 10.1021/acs.jproteome.7b00841]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29619825 48]. | ||
#Lim S, Kim D, Ju S, Shin S, Cho IJ, Park SH, Grailhe R, Lee C, Kim YK, (2018) "Glioblastoma-secreted soluble CD44 activates tau pathology in the brain." <i>Exp Mol Med</i> <b>50</b>(4):5; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29622771 29622771]; doi: [https://dx.doi.org/10.1038/s12276-017-0008-7 10.1038/s12276-017-0008-7]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29622771 2]. | #Lim S, Kim D, Ju S, Shin S, Cho IJ, Park SH, Grailhe R, Lee C, Kim YK, (2018) "Glioblastoma-secreted soluble CD44 activates tau pathology in the brain." <i>Exp Mol Med</i> <b>50</b>(4):5; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29622771 29622771]; doi: [https://dx.doi.org/10.1038/s12276-017-0008-7 10.1038/s12276-017-0008-7]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29622771 2]. | ||
#Sanz-Bravo A, Alvarez-Navarro C, Martín-Esteban A, Barnea E, Admon A, López de Castro JA, (2018) "Ranking the contribution of ankylosing spondylitis-associated ERAP1 polymorphisms to shaping the HLA-B*27 peptidome." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29632046 29632046]; doi: [https://dx.doi.org/10.1074/mcp.RA117.000565 10.1074/mcp.RA117.000565]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29632046 15]. | #Sanz-Bravo A, Alvarez-Navarro C, Martín-Esteban A, Barnea E, Admon A, López de Castro JA, (2018) "Ranking the contribution of ankylosing spondylitis-associated ERAP1 polymorphisms to shaping the HLA-B*27 peptidome." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29632046 29632046]; doi: [https://dx.doi.org/10.1074/mcp.RA117.000565 10.1074/mcp.RA117.000565]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29632046 15]. | ||
+ | #Azimi A, Kaufman KL, Ali M, Arthur J, Kossard S, Fernandez-Penas P, (2018) "Differential proteomic analysis of actinic keratosis, Bowen's disease and cutaneous squamous cell carcinoma by label-free LC-MS/MS." <i>J Dermatol Sci</i> <b>91</b>(1):69–78; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29665991 29665991]; doi: [https://dx.doi.org/10.1016/j.jdermsci.2018.04.006 10.1016/j.jdermsci.2018.04.006]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29665991 31]. | ||
#Wu W, Zaal EA, Berkers CR, Lemeer S, Heck AJR, (2018) "CTGF/VEGFA-activated fibroblasts promote tumor migration through micro-environmental modulation." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29669735 29669735]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000708 10.1074/mcp.RA118.000708]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29669735 57]. | #Wu W, Zaal EA, Berkers CR, Lemeer S, Heck AJR, (2018) "CTGF/VEGFA-activated fibroblasts promote tumor migration through micro-environmental modulation." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29669735 29669735]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000708 10.1074/mcp.RA118.000708]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29669735 57]. | ||
+ | #Mao F, Lei J, Enoch O, Wei M, Zhao C, Quan Y, Yu W, (2018) "Quantitative proteomics of Bombyx mori after BmNPV challenge." <i>J Proteomics</i> <b>181</b>:142–151; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29674014 29674014]; doi: [https://dx.doi.org/10.1016/j.jprot.2018.04.010 10.1016/j.jprot.2018.04.010]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29674014 18]. | ||
#Johnston D, Malo Estepa I, Ebhardt HA, Crowe MA, Diskin MG, (2018) "Differences in the bovine milk whey proteome between early pregnancy and the estrous cycle." <i>Theriogenology</i> <b>114</b>:301–307; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29677633 29677633]; doi: [https://dx.doi.org/10.1016/j.theriogenology.2018.04.008 10.1016/j.theriogenology.2018.04.008]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29677633 63]. | #Johnston D, Malo Estepa I, Ebhardt HA, Crowe MA, Diskin MG, (2018) "Differences in the bovine milk whey proteome between early pregnancy and the estrous cycle." <i>Theriogenology</i> <b>114</b>:301–307; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29677633 29677633]; doi: [https://dx.doi.org/10.1016/j.theriogenology.2018.04.008 10.1016/j.theriogenology.2018.04.008]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29677633 63]. | ||
+ | #Zhang X, Chang H, Dong Z, Zhang Y, Zhao D, Ye L, Xia Q, Zhao P, (2018) "Comparative Proteome Analysis Reveals that Cuticular Proteins Analogous to Peritrophin-Motif Proteins are Involved in the Regeneration of Chitin Layer in the Silk Gland of Bombyx mori at the Molting Stage." <i>Proteomics</i> <b>18</b>(19):e1700389; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29687606 29687606]; doi: [https://dx.doi.org/10.1002/pmic.201700389 10.1002/pmic.201700389]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29687606 6]. | ||
#Komov L, Kadosh DM, Barnea E, Milner E, Hendler A, Admon A, (2018) "Cell Surface MHC Class I Expression is Limited by the Availability of Peptide-Receptive 'Empty' Molecules Rather than by the Supply of Peptide Ligands." <i>Proteomics</i> <b></b>:e1700248; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29707912 29707912]; doi: [https://dx.doi.org/10.1002/pmic.201700248 10.1002/pmic.201700248]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29707912 35]. | #Komov L, Kadosh DM, Barnea E, Milner E, Hendler A, Admon A, (2018) "Cell Surface MHC Class I Expression is Limited by the Availability of Peptide-Receptive 'Empty' Molecules Rather than by the Supply of Peptide Ligands." <i>Proteomics</i> <b></b>:e1700248; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29707912 29707912]; doi: [https://dx.doi.org/10.1002/pmic.201700248 10.1002/pmic.201700248]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29707912 35]. | ||
#Rosting C, Yu J, Cooper HJ, (2018) "High Field Asymmetric Waveform Ion Mobility Spectrometry in Nontargeted Bottom-up Proteomics of Dried Blood Spots." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29707944 29707944]; doi: [https://dx.doi.org/10.1021/acs.jproteome.7b00746 10.1021/acs.jproteome.7b00746]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29707944 42]. | #Rosting C, Yu J, Cooper HJ, (2018) "High Field Asymmetric Waveform Ion Mobility Spectrometry in Nontargeted Bottom-up Proteomics of Dried Blood Spots." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29707944 29707944]; doi: [https://dx.doi.org/10.1021/acs.jproteome.7b00746 10.1021/acs.jproteome.7b00746]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29707944 42]. | ||
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#Meier F, Geyer PE, Virreira Winter S, Cox J, Mann M, (2018) "BoxCar acquisition method enables single-shot proteomics at a depth of 10,000 proteins in 100 minutes." <i>Nat Methods</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29735998 29735998]; doi: [https://dx.doi.org/10.1038/s41592-018-0003-5 10.1038/s41592-018-0003-5]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29735998 60]. | #Meier F, Geyer PE, Virreira Winter S, Cox J, Mann M, (2018) "BoxCar acquisition method enables single-shot proteomics at a depth of 10,000 proteins in 100 minutes." <i>Nat Methods</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29735998 29735998]; doi: [https://dx.doi.org/10.1038/s41592-018-0003-5 10.1038/s41592-018-0003-5]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29735998 60]. | ||
#Seltmann K, Meyer M, Sulcova J, Kockmann T, Wehkamp U, Weidinger S, Auf dem Keller U, Werner S, (2018) "Humidity-regulated CLCA2 protects the epidermis from hyperosmotic stress." <i>Sci Transl Med</i> <b>10</b>(440):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29743348 29743348]; doi: [https://dx.doi.org/10.1126/scitranslmed.aao4650 10.1126/scitranslmed.aao4650]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29743348 24]. | #Seltmann K, Meyer M, Sulcova J, Kockmann T, Wehkamp U, Weidinger S, Auf dem Keller U, Werner S, (2018) "Humidity-regulated CLCA2 protects the epidermis from hyperosmotic stress." <i>Sci Transl Med</i> <b>10</b>(440):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29743348 29743348]; doi: [https://dx.doi.org/10.1126/scitranslmed.aao4650 10.1126/scitranslmed.aao4650]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29743348 24]. | ||
+ | #Malet JK, Impens F, Carvalho F, Hamon MA, Cossart P, Ribet D, (2018) "Rapid Remodeling of the Host Epithelial Cell Proteome by the Listeriolysin O (LLO) Pore-forming Toxin." <i>Mol Cell Proteomics</i> <b>17</b>(8):1627–1636; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29752379 29752379]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000767 10.1074/mcp.RA118.000767]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29752379 4]. | ||
#Aslebagh R, Channaveerappa D, Arcaro KF, Darie CC, (2018) "Comparative two-dimensional polyacrylamide gel electrophoresis (2D-PAGE) of human milk to identify dysregulated proteins in breast cancer." <i>Electrophoresis</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29756217 29756217]; doi: [https://dx.doi.org/10.1002/elps.201800025 10.1002/elps.201800025]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29756217 62]. | #Aslebagh R, Channaveerappa D, Arcaro KF, Darie CC, (2018) "Comparative two-dimensional polyacrylamide gel electrophoresis (2D-PAGE) of human milk to identify dysregulated proteins in breast cancer." <i>Electrophoresis</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29756217 29756217]; doi: [https://dx.doi.org/10.1002/elps.201800025 10.1002/elps.201800025]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29756217 62]. | ||
#Gaviard C, Broutin I, Cosette P, De E, Jouenne T, Hardouin J, (2018) "Lysine succinylation and acetylation in Pseudomonas aeruginosa." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29770699 29770699]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00210 10.1021/acs.jproteome.8b00210]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29770699 24]. | #Gaviard C, Broutin I, Cosette P, De E, Jouenne T, Hardouin J, (2018) "Lysine succinylation and acetylation in Pseudomonas aeruginosa." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29770699 29770699]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00210 10.1021/acs.jproteome.8b00210]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29770699 24]. | ||
#Di Lorenzo G, Voltolini Velho R, Winter D, Thelen M, Ahmadi S, Schweizer M, De Pace R, Cornils K, Yorgan TA, Grüb S, Hermans-Borgmeyer I, Schinke T, Müller-Loennies S, Braulke T, Pohl S, (2018) "Lysosomal proteome and secretome analysis identifies missorted enzymes and their non-degraded substrates in mucolipidosis III mouse cells." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29773673 29773673]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000720 10.1074/mcp.RA118.000720]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29773673 30]. | #Di Lorenzo G, Voltolini Velho R, Winter D, Thelen M, Ahmadi S, Schweizer M, De Pace R, Cornils K, Yorgan TA, Grüb S, Hermans-Borgmeyer I, Schinke T, Müller-Loennies S, Braulke T, Pohl S, (2018) "Lysosomal proteome and secretome analysis identifies missorted enzymes and their non-degraded substrates in mucolipidosis III mouse cells." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29773673 29773673]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000720 10.1074/mcp.RA118.000720]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29773673 30]. | ||
#Wang H, Cheng Q, Li X, Hu F, Han L, Zhang H, Li L, Ge J, Ying X, Guo X, Wang Q, (2018) "Loss of TIGAR induces oxidative stress and meiotic defects in oocytes from obese mice." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29776966 29776966]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000620 10.1074/mcp.RA118.000620]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29776966 9]. | #Wang H, Cheng Q, Li X, Hu F, Han L, Zhang H, Li L, Ge J, Ying X, Guo X, Wang Q, (2018) "Loss of TIGAR induces oxidative stress and meiotic defects in oocytes from obese mice." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29776966 29776966]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000620 10.1074/mcp.RA118.000620]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29776966 9]. | ||
+ | #Guo J, Zhang T, Guo Y, Sun T, Li H, Zhang X, Yin H, Cao G, Yin Y, Wang H, Shi L, Guo X, Sha J, Eppig JJ, Su YQ, (2018) "Oocyte stage-specific effects of MTOR determine granulosa cell fate and oocyte quality in mice." <i>Proc Natl Acad Sci U S A</i> <b>115</b>(23):E5326–E5333; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29784807 29784807]; doi: [https://dx.doi.org/10.1073/pnas.1800352115 10.1073/pnas.1800352115]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29784807 30]. | ||
#Ternette N, Olde Nordkamp MJM, Müller J, Anderson AP, Nicastri A, Hill AVS, Kessler BM, Li D, (2018) "Immunopeptidomic Profiling of HLA-A2-Positive Triple Negative Breast Cancer Identifies Potential Immunotherapy Target Antigens." <i>Proteomics</i> <b>18</b>(12):e1700465; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29786170 29786170]; doi: [https://dx.doi.org/10.1002/pmic.201700465 10.1002/pmic.201700465]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29786170 66]. | #Ternette N, Olde Nordkamp MJM, Müller J, Anderson AP, Nicastri A, Hill AVS, Kessler BM, Li D, (2018) "Immunopeptidomic Profiling of HLA-A2-Positive Triple Negative Breast Cancer Identifies Potential Immunotherapy Target Antigens." <i>Proteomics</i> <b>18</b>(12):e1700465; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29786170 29786170]; doi: [https://dx.doi.org/10.1002/pmic.201700465 10.1002/pmic.201700465]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29786170 66]. | ||
#Löffler MW, Kowalewski DJ, Backert L, Bernhardt J, Adam P, Schuster H, Dengler F, Backes D, Kopp HG, Beckert S, Wagner S, Königsrainer I, Kohlbacher O, Kanz L, Königsrainer A, Rammensee HG, Stevanovic S, Haen SP, (2018) "Mapping the HLA ligandome of Colorectal Cancer Reveals an Imprint of Malignant Cell Transformation." <i>Cancer Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29789417 29789417]; doi: [https://dx.doi.org/10.1158/0008-5472.CAN-17-1745 10.1158/0008-5472.CAN-17-1745]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29789417 530]. | #Löffler MW, Kowalewski DJ, Backert L, Bernhardt J, Adam P, Schuster H, Dengler F, Backes D, Kopp HG, Beckert S, Wagner S, Königsrainer I, Kohlbacher O, Kanz L, Königsrainer A, Rammensee HG, Stevanovic S, Haen SP, (2018) "Mapping the HLA ligandome of Colorectal Cancer Reveals an Imprint of Malignant Cell Transformation." <i>Cancer Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29789417 29789417]; doi: [https://dx.doi.org/10.1158/0008-5472.CAN-17-1745 10.1158/0008-5472.CAN-17-1745]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29789417 530]. | ||
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#Pietras Z, Wojcik MA, Borowski LS, Szewczyk M, Kulinski TM, Cysewski D, Stepien PP, Dziembowski A, Szczesny RJ, (2018) "Dedicated surveillance mechanism controls G-quadruplex forming non-coding RNAs in human mitochondria." <i>Nat Commun</i> <b>9</b>(1):2558; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29967381 29967381]; doi: [https://dx.doi.org/10.1038/s41467-018-05007-9 10.1038/s41467-018-05007-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29967381 18]. | #Pietras Z, Wojcik MA, Borowski LS, Szewczyk M, Kulinski TM, Cysewski D, Stepien PP, Dziembowski A, Szczesny RJ, (2018) "Dedicated surveillance mechanism controls G-quadruplex forming non-coding RNAs in human mitochondria." <i>Nat Commun</i> <b>9</b>(1):2558; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29967381 29967381]; doi: [https://dx.doi.org/10.1038/s41467-018-05007-9 10.1038/s41467-018-05007-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29967381 18]. | ||
#Akimov V, Barrio-Hernandez I, Hansen SVF, Hallenborg P, Pedersen AK, Bekker-Jensen DB, Puglia M, Christensen SDK, Vanselow JT, Nielsen MM, Kratchmarova I, Kelstrup CD, Olsen JV, Blagoev B, (2018) "UbiSite approach for comprehensive mapping of lysine and N-terminal ubiquitination sites." <i>Nat Struct Mol Biol</i> <b>25</b>(7):631–640; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29967540 29967540]; doi: [https://dx.doi.org/10.1038/s41594-018-0084-y 10.1038/s41594-018-0084-y]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29967540 136]. | #Akimov V, Barrio-Hernandez I, Hansen SVF, Hallenborg P, Pedersen AK, Bekker-Jensen DB, Puglia M, Christensen SDK, Vanselow JT, Nielsen MM, Kratchmarova I, Kelstrup CD, Olsen JV, Blagoev B, (2018) "UbiSite approach for comprehensive mapping of lysine and N-terminal ubiquitination sites." <i>Nat Struct Mol Biol</i> <b>25</b>(7):631–640; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29967540 29967540]; doi: [https://dx.doi.org/10.1038/s41594-018-0084-y 10.1038/s41594-018-0084-y]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29967540 136]. | ||
+ | #Tölle RC, Gaggioli C, Dengjel J, (2018) "Three-Dimensional Cell Culture Conditions Affect the Proteome of Cancer-Associated Fibroblasts." <i>J Proteome Res</i> <b>17</b>(8):2780–2789; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29989826 29989826]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00237 10.1021/acs.jproteome.8b00237]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29989826 318]. | ||
#Sureka R, Wadhwa R, Thakur SS, Pathak RU, Mishra RK, (2018) "Comparison of Nuclear Matrix and Mitotic Chromosome Scaffold proteins in Drosophila S2 cells - Transmission of hallmarks of nuclear organization through mitosis." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29991507 29991507]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000591 10.1074/mcp.RA118.000591]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29991507 6]. | #Sureka R, Wadhwa R, Thakur SS, Pathak RU, Mishra RK, (2018) "Comparison of Nuclear Matrix and Mitotic Chromosome Scaffold proteins in Drosophila S2 cells - Transmission of hallmarks of nuclear organization through mitosis." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29991507 29991507]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000591 10.1074/mcp.RA118.000591]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29991507 6]. | ||
#Kim D, Liu Y, Oberly S, Freire R, Smolka MB, (2018) "ATR-mediated proteome remodeling is a major determinant of homologous recombination capacity in cancer cells." <i>Nucleic Acids Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30010936 30010936]; doi: [https://dx.doi.org/10.1093/nar/gky625 10.1093/nar/gky625]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30010936 2]. | #Kim D, Liu Y, Oberly S, Freire R, Smolka MB, (2018) "ATR-mediated proteome remodeling is a major determinant of homologous recombination capacity in cancer cells." <i>Nucleic Acids Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30010936 30010936]; doi: [https://dx.doi.org/10.1093/nar/gky625 10.1093/nar/gky625]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30010936 2]. | ||
Line 1,896: | Line 1,921: | ||
#Shraibman B, Barnea E, Melamed Kadosh D, Haimovich Y, Slobodin G, Rosner I, López-Larrea C, Hilf N, Kuttruff S, Song C, Britten C, Castle J, Kreiter S, Frenzel K, Tatagiba M, Tabatabai G, Dietrich PY, Dutoit V, Wick W, Platten M, Winkler F, Von Deimling A, Kroep J, Sahuquillo J, Martinez-Ricarte F, Rodon J, Lassen U, Ottensmeier C, van der Burg SH, Thor Straten P, Poulsen HS, Ponsati B, Okada H, Rammensee HG, Sahin U, Singh H, Admon A, (2018) "Identification of tumor antigens among the HLA peptidomes of Glioblastoma tumors and plasma." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30072578 30072578]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000792 10.1074/mcp.RA118.000792]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30072578 75]. | #Shraibman B, Barnea E, Melamed Kadosh D, Haimovich Y, Slobodin G, Rosner I, López-Larrea C, Hilf N, Kuttruff S, Song C, Britten C, Castle J, Kreiter S, Frenzel K, Tatagiba M, Tabatabai G, Dietrich PY, Dutoit V, Wick W, Platten M, Winkler F, Von Deimling A, Kroep J, Sahuquillo J, Martinez-Ricarte F, Rodon J, Lassen U, Ottensmeier C, van der Burg SH, Thor Straten P, Poulsen HS, Ponsati B, Okada H, Rammensee HG, Sahin U, Singh H, Admon A, (2018) "Identification of tumor antigens among the HLA peptidomes of Glioblastoma tumors and plasma." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30072578 30072578]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000792 10.1074/mcp.RA118.000792]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30072578 75]. | ||
#Park S, Park JH, Jung HJ, Jang JH, Ahn S, Kim Y, Suh PG, Chae S, Yoon JH, Ryu SH, Hwang D, (2018) "A secretome profile indicative of oleate-induced proliferation of HepG2 hepatocellular carcinoma cells." <i>Exp Mol Med</i> <b>50</b>(8):93; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30076294 30076294]; doi: [https://dx.doi.org/10.1038/s12276-018-0120-3 10.1038/s12276-018-0120-3]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30076294 24]. | #Park S, Park JH, Jung HJ, Jang JH, Ahn S, Kim Y, Suh PG, Chae S, Yoon JH, Ryu SH, Hwang D, (2018) "A secretome profile indicative of oleate-induced proliferation of HepG2 hepatocellular carcinoma cells." <i>Exp Mol Med</i> <b>50</b>(8):93; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30076294 30076294]; doi: [https://dx.doi.org/10.1038/s12276-018-0120-3 10.1038/s12276-018-0120-3]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30076294 24]. | ||
+ | #Kozono S, Lin YM, Seo HS, Pinch B, Lian X, Qiu C, Herbert MK, Chen CH, Tan L, Gao ZJ, Massefski W, Doctor ZM, Jackson BP, Chen Y, Dhe-Paganon S, Lu KP, Zhou XZ, (2018) "Arsenic targets Pin1 and cooperates with retinoic acid to inhibit cancer-driving pathways and tumor-initiating cells." <i>Nat Commun</i> <b>9</b>(1):3069; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30093655 30093655]; doi: [https://dx.doi.org/10.1038/s41467-018-05402-2 10.1038/s41467-018-05402-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30093655 12]. | ||
#Kumar G, Hummel K, Razzazi-Fazeli E, El-Matbouli M, (2018) "Proteome Profiles of Head Kidney and Spleen of Rainbow Trout (Oncorhynchus Mykiss)." <i>Proteomics</i> <b></b>:e1800101; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30094954 30094954]; doi: [https://dx.doi.org/10.1002/pmic.201800101 10.1002/pmic.201800101]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30094954 54]. | #Kumar G, Hummel K, Razzazi-Fazeli E, El-Matbouli M, (2018) "Proteome Profiles of Head Kidney and Spleen of Rainbow Trout (Oncorhynchus Mykiss)." <i>Proteomics</i> <b></b>:e1800101; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30094954 30094954]; doi: [https://dx.doi.org/10.1002/pmic.201800101 10.1002/pmic.201800101]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30094954 54]. | ||
#Schiza C, Korbakis D, Panteleli E, Jarvi K, Drabovich AP, Diamandis EP, (2018) "Discovery of a human testis-specific protein complex TEX101-DPEP3 and selection of its disrupting antibodies." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30097533 30097533]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000749 10.1074/mcp.RA118.000749]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30097533 44]. | #Schiza C, Korbakis D, Panteleli E, Jarvi K, Drabovich AP, Diamandis EP, (2018) "Discovery of a human testis-specific protein complex TEX101-DPEP3 and selection of its disrupting antibodies." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30097533 30097533]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000749 10.1074/mcp.RA118.000749]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30097533 44]. | ||
#Hwang H, Jeong JE, Lee HK, Yun KN, An HJ, Lee B, Paik YK, Jeong TS, Yee GT, Kim JY, Yoo JS, (2018) "Identification of Missing Proteins in Human Olfactory Epithelial Tissue by Liquid Chromatography-Tandem Mass Spectrometry." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30113170 30113170]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00408 10.1021/acs.jproteome.8b00408]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30113170 23]. | #Hwang H, Jeong JE, Lee HK, Yun KN, An HJ, Lee B, Paik YK, Jeong TS, Yee GT, Kim JY, Yoo JS, (2018) "Identification of Missing Proteins in Human Olfactory Epithelial Tissue by Liquid Chromatography-Tandem Mass Spectrometry." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30113170 30113170]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00408 10.1021/acs.jproteome.8b00408]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30113170 23]. | ||
+ | #Simunovic F, Winninger O, Strassburg S, Koch HG, Finkenzeller G, Stark GB, Lampert FM, (2019) "Increased differentiation and production of extracellular matrix components of primary human osteoblasts after cocultivation with endothelial cells: A quantitative proteomics approach." <i>J Cell Biochem</i> <b>120</b>(1):396–404; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30126049 30126049]; doi: [https://dx.doi.org/10.1002/jcb.27394 10.1002/jcb.27394]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30126049 20]. | ||
#DeLeon-Pennell KY, Mouton AJ, Ero OK, Ma Y, Padmanabhan Iyer R, Flynn ER, Espinoza I, Musani SK, Vasan RS, Hall ME, Fox ER, Lindsey ML, (2018) "LXR/RXR signaling and neutrophil phenotype following myocardial infarction classify sex differences in remodeling." <i>Basic Res Cardiol</i> <b>113</b>(5):40; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30132266 30132266]; doi: [https://dx.doi.org/10.1007/s00395-018-0699-5 10.1007/s00395-018-0699-5]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30132266 120]. | #DeLeon-Pennell KY, Mouton AJ, Ero OK, Ma Y, Padmanabhan Iyer R, Flynn ER, Espinoza I, Musani SK, Vasan RS, Hall ME, Fox ER, Lindsey ML, (2018) "LXR/RXR signaling and neutrophil phenotype following myocardial infarction classify sex differences in remodeling." <i>Basic Res Cardiol</i> <b>113</b>(5):40; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30132266 30132266]; doi: [https://dx.doi.org/10.1007/s00395-018-0699-5 10.1007/s00395-018-0699-5]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30132266 120]. | ||
#Weßbecher IM, Hinrichsen I, Funke S, Oellerich T, Plotz G, Zeuzem S, Grus FH, Biondi RM, Brieger A, (2018) "DNA mismatch repair activity of MutLα is regulated by CK2-dependent phosphorylation of MLH1 (S477)." <i>Mol Carcinog</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30136313 30136313]; doi: [https://dx.doi.org/10.1002/mc.22892 10.1002/mc.22892]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30136313 2]. | #Weßbecher IM, Hinrichsen I, Funke S, Oellerich T, Plotz G, Zeuzem S, Grus FH, Biondi RM, Brieger A, (2018) "DNA mismatch repair activity of MutLα is regulated by CK2-dependent phosphorylation of MLH1 (S477)." <i>Mol Carcinog</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30136313 30136313]; doi: [https://dx.doi.org/10.1002/mc.22892 10.1002/mc.22892]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30136313 2]. | ||
+ | #Varland S, Aksnes H, Kryuchkov F, Impens F, Van Haver D, Jonckheere V, Ziegler M, Gevaert K, Van Damme P, Arnesen T, (2018) "N-terminal acetylation levels are maintained during acetyl-CoA deficiency in Saccharomyces cerevisiae." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30150368 30150368]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000982 10.1074/mcp.RA118.000982]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30150368 17]. | ||
#Béguin EP, van den Eshof BL, Hoogendijk AJ, Nota B, Mertens K, Meijer AB, van den Biggelaar M, (2018) "Integrated proteomic analysis of tumor necrosis factor α and interleukin 1β-induced endothelial inflammation." <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30153514 30153514]; doi: [https://dx.doi.org/10.1016/j.jprot.2018.08.011 10.1016/j.jprot.2018.08.011]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30153514 51]. | #Béguin EP, van den Eshof BL, Hoogendijk AJ, Nota B, Mertens K, Meijer AB, van den Biggelaar M, (2018) "Integrated proteomic analysis of tumor necrosis factor α and interleukin 1β-induced endothelial inflammation." <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30153514 30153514]; doi: [https://dx.doi.org/10.1016/j.jprot.2018.08.011 10.1016/j.jprot.2018.08.011]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30153514 51]. | ||
#Ten-Doménech I, Simó-Alfonso EF, Herrero-Martínez JM, (2018) "Improving Fractionation of Human Milk Proteins through Calcium Phosphate Coprecipitation and Their Rapid Characterization by Capillary Electrophoresis." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30156851 30156851]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00526 10.1021/acs.jproteome.8b00526]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30156851 26]. | #Ten-Doménech I, Simó-Alfonso EF, Herrero-Martínez JM, (2018) "Improving Fractionation of Human Milk Proteins through Calcium Phosphate Coprecipitation and Their Rapid Characterization by Capillary Electrophoresis." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30156851 30156851]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00526 10.1021/acs.jproteome.8b00526]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30156851 26]. | ||
#Carnielli CM, Macedo CCS, De Rossi T, Granato DC, Rivera C, Domingues RR, Pauletti BA, Yokoo S, Heberle H, Busso-Lopes AF, Cervigne NK, Sawazaki-Calone I, Meirelles GV, Marchi FA, Telles GP, Minghim R, Ribeiro ACP, Brandão TB, de Castro G Jr, González-Arriagada WA, Gomes A, Penteado F, Santos-Silva AR, Lopes MA, Rodrigues PC, Sundquist E, Salo T, da Silva SD, Alaoui-Jamali MA, Graner E, Fox JW, Coletta RD, Paes Leme AF, (2018) "Combining discovery and targeted proteomics reveals a prognostic signature in oral cancer." <i>Nat Commun</i> <b>9</b>(1):3598; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30185791 30185791]; doi: [https://dx.doi.org/10.1038/s41467-018-05696-2 10.1038/s41467-018-05696-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30185791 122]. | #Carnielli CM, Macedo CCS, De Rossi T, Granato DC, Rivera C, Domingues RR, Pauletti BA, Yokoo S, Heberle H, Busso-Lopes AF, Cervigne NK, Sawazaki-Calone I, Meirelles GV, Marchi FA, Telles GP, Minghim R, Ribeiro ACP, Brandão TB, de Castro G Jr, González-Arriagada WA, Gomes A, Penteado F, Santos-Silva AR, Lopes MA, Rodrigues PC, Sundquist E, Salo T, da Silva SD, Alaoui-Jamali MA, Graner E, Fox JW, Coletta RD, Paes Leme AF, (2018) "Combining discovery and targeted proteomics reveals a prognostic signature in oral cancer." <i>Nat Commun</i> <b>9</b>(1):3598; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30185791 30185791]; doi: [https://dx.doi.org/10.1038/s41467-018-05696-2 10.1038/s41467-018-05696-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30185791 122]. | ||
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+ | #Bigenzahn JW, Collu GM, Kartnig F, Pieraks M, Vladimer GI, Heinz LX, Sedlyarov V, Schischlik F, Fauster A, Rebsamen M, Parapatics K, Blomen VA, Müller AC, Winter GE, Kralovics R, Brummelkamp TR, Mlodzik M, Superti-Furga G, (2018) "LZTR1 is a regulator of RAS ubiquitination and signaling." <i>Science</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30442766 30442766]; doi: [https://dx.doi.org/10.1126/science.aap8210 10.1126/science.aap8210]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30442766 20]. | ||
+ | #Cominetti O, Núñez Galindo A, Corthésy J, Valsesia A, Irincheeva I, Kussmann M, Saris WHM, Astrup A, McPherson R, Harper ME, Dent R, Hager J, Dayon L, (2018) "Obesity shows preserved plasma proteome in large independent clinical cohorts." <i>Sci Rep</i> <b>8</b>(1):16981; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30451909 30451909]; doi: [https://dx.doi.org/10.1038/s41598-018-35321-7 10.1038/s41598-018-35321-7]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30451909 318]. | ||
+ | #Cavanagh JP, Pain M, Askarian F, Bruun JA, Urbarova I, Wai SN, Schmidt F, Johannessen M, (2018) "Comparative exoproteome profiling of an invasive and a commensal Staphylococcus haemolyticus isolate." <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30472255 30472255]; doi: [https://dx.doi.org/10.1016/j.jprot.2018.11.013 10.1016/j.jprot.2018.11.013]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30472255 12]. | ||
+ | #Zhu J, Garrigues L, Van den Toorn H, Stahl B, Heck AJR, (2018) "Discovery and quantification of non-human proteins in human milk." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30489082 30489082]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00550 10.1021/acs.jproteome.8b00550]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30489082 37]. | ||
+ | #Back S, Gorman AW, Vogel C, Silva GM, (2018) "Site-specific K63 ubiquitinomics provides insights into translation regulation under stress." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30489083 30489083]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00623 10.1021/acs.jproteome.8b00623]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30489083 20]. | ||
+ | #Novo D, Heath N, Mitchell L, Caligiuri G, MacFarlane A, Reijmer D, Charlton L, Knight J, Calka M, McGhee E, Dornier E, Sumpton D, Mason S, Echard A, Klinkert K, Secklehner J, Kruiswijk F, Vousden K, Macpherson IR, Blyth K, Bailey P, Yin H, Carlin LM, Morton J, Zanivan S, Norman JC, (2018) "Mutant p53s generate pro-invasive niches by influencing exosome podocalyxin levels." <i>Nat Commun</i> <b>9</b>(1):5069; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30498210 30498210]; doi: [https://dx.doi.org/10.1038/s41467-018-07339-y 10.1038/s41467-018-07339-y]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30498210 2]. | ||
+ | #Giovani PA, Salmon CR, Martins L, Leme AFP, Puppin-Rontani RM, Mofatto LS, Nociti FH Jr, Kantovitz KR, (2018) "Membrane proteome characterization of periodontal ligament cell sets from deciduous and permanent teeth." <i>J Periodontol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30499115 30499115]; doi: [https://dx.doi.org/10.1002/JPER.18-0217 10.1002/JPER.18-0217]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30499115 6]. | ||
+ | #Gruhlke MCH, Antelmann H, Bernhardt J, Kloubert V, Rink L, Slusarenko AJ, (2018) "The human allicin-proteome: S-thioallylation of proteins by the garlic defence substance allicin and its biological effects." <i>Free Radic Biol Med</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30500420 30500420]; doi: [https://dx.doi.org/10.1016/j.freeradbiomed.2018.11.022 10.1016/j.freeradbiomed.2018.11.022]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30500420 24]. | ||
+ | #Wolf A, Liesinger L, Spoerk S, Schittmayer M, Lang-Loidolt D, Birner-Gruenberger R, Tomazic PV, (2018) "Olfactory cleft proteome does not reflect olfactory performance in patients with idiopathic and postinfectious olfactory disorder: A pilot study." <i>Sci Rep</i> <b>8</b>(1):17554; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30510230 30510230]; doi: [https://dx.doi.org/10.1038/s41598-018-35776-8 10.1038/s41598-018-35776-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30510230 21]. | ||
+ | #Tascher G, Gerbaix M, Maes P, Chazarin B, Ghislin S, Antropova E, Vassilieva G, Ouzren-Zarhloul N, Gauquelin-Koch G, Vico L, Frippiat JP, Bertile F, (2018) "Analysis of femurs from mice embarked on board BION-M1 biosatellite reveals a decrease in immune cell development, including B cells, after 1 wk of recovery on Earth." <i>FASEB J</i> <b></b>:fj201801463R; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30521760 30521760]; doi: [https://dx.doi.org/10.1096/fj.201801463R 10.1096/fj.201801463R]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30521760 36]. | ||
+ | #Cann ML, Herring LE, Haar L, Gilbert TSK, Goldfarb D, Richards KL, Graves LM, Lawrence DS, (2018) "Dasatinib is preferentially active in the activated B-cell subtype of diffuse large B-cell lymphoma." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30540191 30540191]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00841 10.1021/acs.jproteome.8b00841]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30540191 24]. | ||
+ | #Khodadoust MS, Olsson N, Chen B, Sworder B, Shree T, Liu CL, Zhang L, Czerwinski DK, Davis MM, Levy R, Elias JE, Alizadeh AA, (2018) "B cell lymphomas present immunoglobulin neoantigens." <i>Blood</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30545830 30545830]; doi: [https://dx.doi.org/10.1182/blood-2018-06-845156 10.1182/blood-2018-06-845156]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30545830 52]. | ||
+ | #Roustan V, Weckwerth W, (2018) "Quantitative Phosphoproteomic and System-Level Analysis of TOR Inhibition Unravel Distinct Organellar Acclimation in <i>Chlamydomonas reinhardtii</i>." <i>Front Plant Sci</i> <b>9</b>:1590; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30546371 30546371]; doi: [https://dx.doi.org/10.3389/fpls.2018.01590 10.3389/fpls.2018.01590]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30546371 54]. | ||
+ | #Yao Z, Jia X, Megger DA, Chen J, Liu Y, Li J, Sitek B, Yuan Z, (2018) "Label-free Proteomic Analysis of Exosomes Secreted from THP-1-derived Macrophages Treated with IFN-α Identifies Antiviral Proteins Enriched in Exosomes." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30550287 30550287]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00514 10.1021/acs.jproteome.8b00514]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30550287 23]. | ||
+ | #Yelamanchi SD, Tyagi A, Mohanty V, Dutta P, Korbonits M, Chavan S, Advani J, Madugundu AK, Dey G, Datta KK, Rajyalakshmi M, Sahasrabuddhe NA, Chaturvedi A, Kumar A, Das AA, Ghosh D, Jogdand GM, Nair HH, Saini K, Panchal M, Sarvaiya MA, Mohanraj SS, Sengupta N, Saxena P, Subramani PA, Kumar P, Akkali R, Reshma SV, Santhosh RS, Rastogi S, Kumar S, Ghosh SK, Irlapati VK, Srinivasan A, Radotra BD, Mathur PP, Wong GW, Satishchandra P, Chatterjee A, Gowda H, Bhansali A, Pandey A, Shankar SK, Mahadevan A, Prasad TSK, (2018) "Proteomic Analysis of the Human Anterior Pituitary Gland." <i>OMICS</i> <b>22</b>(12):759–769; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30571610 30571610]; doi: [https://dx.doi.org/10.1089/omi.2018.0160 10.1089/omi.2018.0160]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30571610 3]. | ||
+ | #Nanaware PP, Jurewicz MM, Leszyk J, Shaffer SA, Stern LJ, (2018) "HLA-DO modulates the diversity of the MHC-II self-peptidome." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30573663 30573663]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000956 10.1074/mcp.RA118.000956]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30573663 26]. | ||
+ | #Zhou Z, Chen Y, Jin M, He J, Guli A, Yan C, Ding S, (2018) "Comprehensive analysis of lysine acetylome reveals a site-specific pattern in rapamycin-induced autophagy." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30592415 30592415]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00533 10.1021/acs.jproteome.8b00533]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30592415 6]. | ||
+ | #Dunn J, Ferluga S, Sharma V, Futschik M, Hilton DA, Adams CL, Lasonder E, Hannemann OC, (2018) "Proteomic analysis discovers the differential expression of novel proteins and phosphoproteins in meningioma including NEK9, HK2 and SET and deregulation of RNA metabolism." <i>EBioMedicine</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30594554 30594554]; doi: [https://dx.doi.org/10.1016/j.ebiom.2018.12.048 10.1016/j.ebiom.2018.12.048]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30594554 78]. | ||
+ | #Żylicz JJ, Bousard A, Žumer K, Dossin F, Mohammad E, da Rocha ST, Schwalb B, Syx L, Dingli F, Loew D, Cramer P, Heard E, (2019) "The Implication of Early Chromatin Changes in X Chromosome Inactivation." <i>Cell</i> <b>176</b>(1-2):182–197.e23; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30595450 30595450]; doi: [https://dx.doi.org/10.1016/j.cell.2018.11.041 10.1016/j.cell.2018.11.041]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30595450 10]. | ||
+ | #Queiroz RML, Smith T, Villanueva E, Marti-Solano M, Monti M, Pizzinga M, Mirea DM, Ramakrishna M, Harvey RF, Dezi V, Thomas GH, Willis AE, Lilley KS, (2019) "Comprehensive identification of RNA-protein interactions in any organism using orthogonal organic phase separation (OOPS)." <i>Nat Biotechnol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30607034 30607034]; doi: [https://dx.doi.org/10.1038/s41587-018-0001-2 10.1038/s41587-018-0001-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30607034 106]. | ||
+ | #Orre LM, Vesterlund M, Pan Y, Arslan T, Zhu Y, Fernandez Woodbridge A, Frings O, Fredlund E, Lehtiö J, (2019) "SubCellBarCode: Proteome-wide Mapping of Protein Localization and Relocalization." <i>Mol Cell</i> <b>73</b>(1):166–182.e7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30609389 30609389]; doi: [https://dx.doi.org/10.1016/j.molcel.2018.11.035 10.1016/j.molcel.2018.11.035]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30609389 10]. | ||
+ | #Landsberg CD, Megger DA, Hotter D, Rückborn MU, Eilbrecht M, Rashidi-Alavijeh J, Howe S, Heinrichs S, Sauter D, Sitek B, Le-Trilling VTK, Trilling M, (2018) "A Mass Spectrometry-Based Profiling of Interactomes of Viral DDB1- and Cullin Ubiquitin Ligase-Binding Proteins Reveals NF-κB Inhibitory Activity of the HIV-2-Encoded Vpx." <i>Front Immunol</i> <b>9</b>:2978; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30619335 30619335]; doi: [https://dx.doi.org/10.3389/fimmu.2018.02978 10.3389/fimmu.2018.02978]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30619335 48]. | ||
+ | #Yang H, Li Y, Zhao M, Wu F, Wang X, Xiao W, Wang Y, Zhang J, Wang F, Xu F, Zeng WF, Overall CM, He SM, Chi H, Xu P, (2019) "Precision <i>de novo</i> peptide sequencing using mirror proteases of Ac-LysargiNase and trypsin for large-scale proteomics." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30622160 30622160]; doi: [https://dx.doi.org/10.1074/mcp.TIR118.000918 10.1074/mcp.TIR118.000918]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30622160 2]. | ||
+ | #Chen D, Ludwig K, Krokhin OV, Spicer V, Yang Z, Shen X, Hummon AB, Sun L, (2019) "Capillary zone electrophoresis-tandem mass spectrometry for large-scale phosphoproteomics with the production of over 11000 phosphopeptides from the colon carcinoma HCT116 cell line." <i>Anal Chem</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30624053 30624053]; doi: [https://dx.doi.org/10.1021/acs.analchem.8b04770 10.1021/acs.analchem.8b04770]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30624053 40]. | ||
+ | #Chen Z, Lei C, Wang C, Li N, Srivastava M, Tang M, Zhang H, Choi JM, Jung SY, Qin J, Chen J, (2019) "Global phosphoproteomic analysis reveals ARMC10 as an AMPK substrate that regulates mitochondrial dynamics." <i>Nat Commun</i> <b>10</b>(1):104; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30631047 30631047]; doi: [https://dx.doi.org/10.1038/s41467-018-08004-0 10.1038/s41467-018-08004-0]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30631047 30]. | ||
+ | #Hansen M, Peltier J, Killy B, Amin B, Bodendorfer B, Härtlova A, Uebel S, Bosmann M, Hofmann J, Büttner C, Ekici AB, Kuttke M, Franzyk H, Foged C, Beer-Hammer S, Schabbauer G, Trost M, Lang R, (2019) "Macrophage phosphoproteome analysis reveals MINCLE-dependent and -independent mycobacterial cord factor signaling." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30635358 30635358]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000929 10.1074/mcp.RA118.000929]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30635358 72]. | ||
+ | #Pfaff F, Hägglund S, Zoli M, Blaise-Boisseau S, Laloy E, Koethe S, Zühlke D, Riedel K, Zientara S, Bakkali-Kassimi L, Valarcher JF, Höper D, Beer M, Eschbaumer M, (2019) "Proteogenomics Uncovers Critical Elements of Host Response in Bovine Soft Palate Epithelial Cells Following In Vitro Infection with Foot-And-Mouth Disease Virus." <i>Viruses</i> <b>11</b>(1):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30642035 30642035]; doi: [https://dx.doi.org/10.3390/v11010053 10.3390/v11010053]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30642035 110]. | ||
+ | #Kosack L, Wingelhofer B, Popa A, Orlova A, Agerer B, Vilagos B, Majek P, Parapatics K, Lercher A, Ringler A, Klughammer J, Smyth M, Khamina K, Baazim H, de Araujo ED, Rosa DA, Park J, Tin G, Ahmar S, Gunning PT, Bock C, Siddle HV, Woods GM, Kubicek S, Murchison EP, Bennett KL, Moriggl R, Bergthaler A, (2019) "The ERBB-STAT3 Axis Drives Tasmanian Devil Facial Tumor Disease." <i>Cancer Cell</i> <b>35</b>(1):125–139.e9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30645971 30645971]; doi: [https://dx.doi.org/10.1016/j.ccell.2018.11.018 10.1016/j.ccell.2018.11.018]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30645971 20]. | ||
+ | #van Oorschot R, Hansen M, Koornneef JM, Marneth AE, Bergevoet SM, van Bergen MGJM, van Alphen FPJ, van der Zwaan C, Martens JHA, Vermeulen M, Jansen PWTC, Baltissen MPA, Laros-van Gorkom BAP, Janssen H, Jansen JH, von Lindern M, Meijer AB, van den Akker E, van der Reijden BA, (2019) "Molecular mechanisms of bleeding disorder-associated GFI1BQ287* mutation and its affected pathways in megakaryocytes and platelets." <i>Haematologica</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30655368 30655368]; doi: [https://dx.doi.org/10.3324/haematol.2018.194555 10.3324/haematol.2018.194555]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30655368 63]. |
GPMDB was originally constructed to serve as a reference work for all publicly available proteomics generated using tandem mass spectrometry. Public data is downloaded and reanalyzed using the current version of X! Tandem. The result files generated by the reanalysis and the relevant metadata are imported into the database and made available through the associated web site, ftp site and REST interfaces.
Contents |
The following public data repositories are checked daily for new suitable raw data for reanalysis:
Data made available from specific large projects, such as CPTAC or the Human Proteome Atlas, are also included when they are made available. Every effort is made so that reanalyzed results from all data sources are made available within 48 hours of their being released. In addition, data from lab web sites, ftp sites and direct contributions through the GPM sites made available to researchers are imported into GPMDB as part of a daily incremental update process.
GPMDB has been in operation since Jan. 1, 2004. Several large data source repositories have come into existence and ceased activity in the period since that time. All of the data from those repositories (e.g., TRANCHE, Peptidome) were reanalyzed and stored in GPMDB and they are still available even though the source repository sites are no longer active.
Simply because data is made available does not mean that it will be included in GPMDB. The data must be approved our quality control AI for its initial acceptance and it may be rejected subsequently because of either quality or originality concerns.
CAUTION: Many papers contain serious errors in their Methods sections. When using data from the literature, it is important to be skeptical of any experimental parameter (cell line, tissue type, modification reagents, quantitation methoods, etc.) that may impact on your use of the data. We have tried to correct any obvious errors, but there is no way to guarantee that we found them all. When attempting to analyze or reproduce results, keep in mind the likelyhood that even key parts of the experiment methods may have been recorded incorrectly in the associated manuscript, as methods are rarely reviewed properly in the current journal publication process.
The following is a list of data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list was current, as of February 3, 2018.