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The following is a list of data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list was current, as of October 30, 2016. | The following is a list of data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list was current, as of October 30, 2016. | ||
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#Lipton MS, Pasa-Tolic' L, Anderson GA, Anderson DJ, Auberry DL, Battista JR, Daly MJ, Fredrickson J, Hixson KK, Kostandarithes H, Masselon C, Markillie LM, Moore RJ, Romine MF, Shen Y, Stritmatter E, Tolic' N, Udseth HR, Venkateswaran A, Wong KK, Zhao R, Smith RD, (2002) "Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags." <i>Proc Natl Acad Sci U S A</i> <b>99</b>(17):11049–54; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/12177431 12177431]; doi: [https://dx.doi.org/10.1073/pnas.172170199 10.1073/pnas.172170199]; GPMDB: [http://gpmdb.org/data/keyword/12177431 498]. | #Lipton MS, Pasa-Tolic' L, Anderson GA, Anderson DJ, Auberry DL, Battista JR, Daly MJ, Fredrickson J, Hixson KK, Kostandarithes H, Masselon C, Markillie LM, Moore RJ, Romine MF, Shen Y, Stritmatter E, Tolic' N, Udseth HR, Venkateswaran A, Wong KK, Zhao R, Smith RD, (2002) "Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags." <i>Proc Natl Acad Sci U S A</i> <b>99</b>(17):11049–54; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/12177431 12177431]; doi: [https://dx.doi.org/10.1073/pnas.172170199 10.1073/pnas.172170199]; GPMDB: [http://gpmdb.org/data/keyword/12177431 498]. | ||
#Liu T, Qian WJ, Strittmatter EF, Camp DG 2nd, Anderson GA, Thrall BD, Smith RD, (2004) "High-throughput comparative proteome analysis using a quantitative cysteinyl-peptide enrichment technology." <i>Anal Chem</i> <b>76</b>(18):5345–53; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/15362891 15362891]; doi: [https://dx.doi.org/10.1021/ac049485q 10.1021/ac049485q]; GPMDB: [http://gpmdb.org/data/keyword/15362891 6]. | #Liu T, Qian WJ, Strittmatter EF, Camp DG 2nd, Anderson GA, Thrall BD, Smith RD, (2004) "High-throughput comparative proteome analysis using a quantitative cysteinyl-peptide enrichment technology." <i>Anal Chem</i> <b>76</b>(18):5345–53; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/15362891 15362891]; doi: [https://dx.doi.org/10.1021/ac049485q 10.1021/ac049485q]; GPMDB: [http://gpmdb.org/data/keyword/15362891 6]. | ||
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#Sandin M, Chawade A, Levander F, (2015) "Is label-free LC-MS/MS ready for biomarker discovery?" <i>Proteomics Clin Appl</i> <b>9</b>(3-4):289–94; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25656266 25656266]; doi: [https://dx.doi.org/10.1002/prca.201400202 10.1002/prca.201400202]; GPMDB: [http://gpmdb.org/data/keyword/25656266 2]. | #Sandin M, Chawade A, Levander F, (2015) "Is label-free LC-MS/MS ready for biomarker discovery?" <i>Proteomics Clin Appl</i> <b>9</b>(3-4):289–94; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25656266 25656266]; doi: [https://dx.doi.org/10.1002/prca.201400202 10.1002/prca.201400202]; GPMDB: [http://gpmdb.org/data/keyword/25656266 2]. | ||
#Battle A, Khan Z, Wang SH, Mitrano A, Ford MJ, Pritchard JK, Gilad Y, (2015) "Genomic variation. Impact of regulatory variation from RNA to protein." <i>Science</i> <b>347</b>(6222):664–7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25657249 25657249]; doi: [https://dx.doi.org/10.1126/science.1260793 10.1126/science.1260793]; GPMDB: [http://gpmdb.org/data/keyword/25657249 2622]. | #Battle A, Khan Z, Wang SH, Mitrano A, Ford MJ, Pritchard JK, Gilad Y, (2015) "Genomic variation. Impact of regulatory variation from RNA to protein." <i>Science</i> <b>347</b>(6222):664–7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25657249 25657249]; doi: [https://dx.doi.org/10.1126/science.1260793 10.1126/science.1260793]; GPMDB: [http://gpmdb.org/data/keyword/25657249 2622]. | ||
- | #St-Denis N, Gupta GD, Lin ZY, Gonzalez-Badillo B, Pelletier L, Gingras AC, (2015) "Myotubularin-related proteins 3 and 4 interact with polo-like kinase 1 and centrosomal protein of 55 kDa to ensure proper abscission." <i>Mol Cell Proteomics</i> <b>14</b>(4):946–60; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25659891 25659891]; doi: [https://dx.doi.org/10.1074/mcp.M114.046086 10.1074/mcp.M114.046086]; GPMDB: [http://gpmdb.org/data/keyword/25659891 | + | #St-Denis N, Gupta GD, Lin ZY, Gonzalez-Badillo B, Pelletier L, Gingras AC, (2015) "Myotubularin-related proteins 3 and 4 interact with polo-like kinase 1 and centrosomal protein of 55 kDa to ensure proper abscission." <i>Mol Cell Proteomics</i> <b>14</b>(4):946–60; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25659891 25659891]; doi: [https://dx.doi.org/10.1074/mcp.M114.046086 10.1074/mcp.M114.046086]; GPMDB: [http://gpmdb.org/data/keyword/25659891 190]. |
#Hill RC, Calle EA, Dzieciatkowska M, Niklason LE, Hansen KC, (2015) "Quantification of extracellular matrix proteins from a rat lung scaffold to provide a molecular readout for tissue engineering." <i>Mol Cell Proteomics</i> <b>14</b>(4):961–73; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25660013 25660013]; doi: [https://dx.doi.org/10.1074/mcp.M114.045260 10.1074/mcp.M114.045260]; GPMDB: [http://gpmdb.org/data/keyword/25660013 60]. | #Hill RC, Calle EA, Dzieciatkowska M, Niklason LE, Hansen KC, (2015) "Quantification of extracellular matrix proteins from a rat lung scaffold to provide a molecular readout for tissue engineering." <i>Mol Cell Proteomics</i> <b>14</b>(4):961–73; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25660013 25660013]; doi: [https://dx.doi.org/10.1074/mcp.M114.045260 10.1074/mcp.M114.045260]; GPMDB: [http://gpmdb.org/data/keyword/25660013 60]. | ||
#Médard G, Pachl F, Ruprecht B, Klaeger S, Heinzlmeir S, Helm D, Qiao H, Ku X, Wilhelm M, Kuehne T, Wu Z, Dittmann A, Hopf C, Kramer K, Kuster B, (2015) "Optimized chemical proteomics assay for kinase inhibitor profiling." <i>J Proteome Res</i> <b>14</b>(3):1574–86; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25660469 25660469]; doi: [https://dx.doi.org/10.1021/pr5012608 10.1021/pr5012608]; GPMDB: [http://gpmdb.org/data/keyword/25660469 126]. | #Médard G, Pachl F, Ruprecht B, Klaeger S, Heinzlmeir S, Helm D, Qiao H, Ku X, Wilhelm M, Kuehne T, Wu Z, Dittmann A, Hopf C, Kramer K, Kuster B, (2015) "Optimized chemical proteomics assay for kinase inhibitor profiling." <i>J Proteome Res</i> <b>14</b>(3):1574–86; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25660469 25660469]; doi: [https://dx.doi.org/10.1021/pr5012608 10.1021/pr5012608]; GPMDB: [http://gpmdb.org/data/keyword/25660469 126]. | ||
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#Carabetta VJ, Greco TM, Tanner AW, Cristea IM, Dubnau D, (2016) "Temporal Regulation of the <i>Bacillus subtilis</i> Acetylome and Evidence for a Role of MreB Acetylation in Cell Wall Growth." <i>mSystems</i> <b>1</b>(3):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27376153 27376153]; doi: [https://dx.doi.org/10.1128/mSystems.00005-16 10.1128/mSystems.00005-16]; GPMDB: [http://gpmdb.org/data/keyword/27376153 30]. | #Carabetta VJ, Greco TM, Tanner AW, Cristea IM, Dubnau D, (2016) "Temporal Regulation of the <i>Bacillus subtilis</i> Acetylome and Evidence for a Role of MreB Acetylation in Cell Wall Growth." <i>mSystems</i> <b>1</b>(3):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27376153 27376153]; doi: [https://dx.doi.org/10.1128/mSystems.00005-16 10.1128/mSystems.00005-16]; GPMDB: [http://gpmdb.org/data/keyword/27376153 30]. | ||
#Sysoev VO, Fischer B, Frese CK, Gupta I, Krijgsveld J, Hentze MW, Castello A, Ephrussi A, (2016) "Global changes of the RNA-bound proteome during the maternal-to-zygotic transition in Drosophila." <i>Nat Commun</i> <b>7</b>:12128; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27378189 27378189]; doi: [https://dx.doi.org/10.1038/ncomms12128 10.1038/ncomms12128]; GPMDB: [http://gpmdb.org/data/keyword/27378189 25]. | #Sysoev VO, Fischer B, Frese CK, Gupta I, Krijgsveld J, Hentze MW, Castello A, Ephrussi A, (2016) "Global changes of the RNA-bound proteome during the maternal-to-zygotic transition in Drosophila." <i>Nat Commun</i> <b>7</b>:12128; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27378189 27378189]; doi: [https://dx.doi.org/10.1038/ncomms12128 10.1038/ncomms12128]; GPMDB: [http://gpmdb.org/data/keyword/27378189 25]. | ||
- | #Barasa BA, van Oirschot BA, Bianchi P, van Solinge WW, Heck AJ, van Wijk R, Slijper M, (2016) "Proteomics reveals reduced expression of transketolase in pyrimidine 5'-nucleotidase deficient patients." <i>Proteomics Clin Appl</i> <b>10</b>(8):859–69; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27381654 27381654]; doi: [https://dx.doi.org/10.1002/prca.201500130 10.1002/prca.201500130]; GPMDB: [http://gpmdb.org/data/keyword/27381654 | + | #Barasa BA, van Oirschot BA, Bianchi P, van Solinge WW, Heck AJ, van Wijk R, Slijper M, (2016) "Proteomics reveals reduced expression of transketolase in pyrimidine 5'-nucleotidase deficient patients." <i>Proteomics Clin Appl</i> <b>10</b>(8):859–69; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27381654 27381654]; doi: [https://dx.doi.org/10.1002/prca.201500130 10.1002/prca.201500130]; GPMDB: [http://gpmdb.org/data/keyword/27381654 8]. |
#Ashford P, Hernandez A, Greco TM, Buch A, Sodeik B, Cristea IM, Grünewald K, Shepherd A, Topf M, (2016) "HVint: A Strategy for Identifying Novel Protein-Protein Interactions in Herpes Simplex Virus Type 1." <i>Mol Cell Proteomics</i> <b>15</b>(9):2939–53; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27384951 27384951]; doi: [https://dx.doi.org/10.1074/mcp.M116.058552 10.1074/mcp.M116.058552]; GPMDB: [http://gpmdb.org/data/keyword/27384951 19]. | #Ashford P, Hernandez A, Greco TM, Buch A, Sodeik B, Cristea IM, Grünewald K, Shepherd A, Topf M, (2016) "HVint: A Strategy for Identifying Novel Protein-Protein Interactions in Herpes Simplex Virus Type 1." <i>Mol Cell Proteomics</i> <b>15</b>(9):2939–53; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27384951 27384951]; doi: [https://dx.doi.org/10.1074/mcp.M116.058552 10.1074/mcp.M116.058552]; GPMDB: [http://gpmdb.org/data/keyword/27384951 19]. | ||
#Picariello G, Addeo F, Ferranti P, Nocerino R, Paparo L, Passariello A, Dallas DC, Robinson RC, Barile D, Canani RB, (2016) "Antibody-independent identification of bovine milk-derived peptides in breast-milk." <i>Food Funct</i> <b>7</b>(8):3402–9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27396729 27396729]; doi: [https://dx.doi.org/10.1039/c6fo00731g 10.1039/c6fo00731g]; GPMDB: [http://gpmdb.org/data/keyword/27396729 12]. | #Picariello G, Addeo F, Ferranti P, Nocerino R, Paparo L, Passariello A, Dallas DC, Robinson RC, Barile D, Canani RB, (2016) "Antibody-independent identification of bovine milk-derived peptides in breast-milk." <i>Food Funct</i> <b>7</b>(8):3402–9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27396729 27396729]; doi: [https://dx.doi.org/10.1039/c6fo00731g 10.1039/c6fo00731g]; GPMDB: [http://gpmdb.org/data/keyword/27396729 12]. | ||
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#Lee J, McKinney KQ, Pavlopoulos AJ, Han MH, Kim SH, Kim HJ, Hwang S, (2016) "Exosomal proteome analysis of cerebrospinal fluid detects biosignatures of neuromyelitis optica and multiple sclerosis." <i>Clin Chim Acta</i> <b>462</b>:118–126; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27609124 27609124]; doi: [https://dx.doi.org/10.1016/j.cca.2016.09.001 10.1016/j.cca.2016.09.001]; GPMDB: [http://gpmdb.org/data/keyword/27609124 24]. | #Lee J, McKinney KQ, Pavlopoulos AJ, Han MH, Kim SH, Kim HJ, Hwang S, (2016) "Exosomal proteome analysis of cerebrospinal fluid detects biosignatures of neuromyelitis optica and multiple sclerosis." <i>Clin Chim Acta</i> <b>462</b>:118–126; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27609124 27609124]; doi: [https://dx.doi.org/10.1016/j.cca.2016.09.001 10.1016/j.cca.2016.09.001]; GPMDB: [http://gpmdb.org/data/keyword/27609124 24]. | ||
#Subramanian S, Souleimanov A, Smith DL, (2016) "Proteomic Studies on the Effects of Lipo-Chitooligosaccharide and Thuricin 17 under Unstressed and Salt Stressed Conditions in Arabidopsis thaliana." <i>Front Plant Sci</i> <b>7</b>:1314; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27625672 27625672]; doi: [https://dx.doi.org/10.3389/fpls.2016.01314 10.3389/fpls.2016.01314]; GPMDB: [http://gpmdb.org/data/keyword/27625672 36]. | #Subramanian S, Souleimanov A, Smith DL, (2016) "Proteomic Studies on the Effects of Lipo-Chitooligosaccharide and Thuricin 17 under Unstressed and Salt Stressed Conditions in Arabidopsis thaliana." <i>Front Plant Sci</i> <b>7</b>:1314; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27625672 27625672]; doi: [https://dx.doi.org/10.3389/fpls.2016.01314 10.3389/fpls.2016.01314]; GPMDB: [http://gpmdb.org/data/keyword/27625672 36]. | ||
+ | #Stroud DA, Surgenor EE, Formosa LE, Reljic B, Frazier AE, Dibley MG, Osellame LD, Stait T, Beilharz TH, Thorburn DR, Salim A, Ryan MT, (2016) "Accessory subunits are integral for assembly and function of human mitochondrial complex I." <i>Nature</i> <b>538</b>(7623):123–126; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27626371 27626371]; doi: [https://dx.doi.org/10.1038/nature19754 10.1038/nature19754]; GPMDB: [http://gpmdb.org/data/keyword/27626371 1]. | ||
#Worah K, Mathan TS, Vu Manh TP, Keerthikumar S, Schreibelt G, Tel J, Duiveman-de Boer T, Sköld AE, van Spriel AB, de Vries IJ, Huynen MA, Wessels HJ, Gloerich J, Dalod M, Lasonder E, Figdor CG, Buschow SI, (2016) "Proteomics of Human Dendritic Cell Subsets Reveals Subset-Specific Surface Markers and Differential Inflammasome Function." <i>Cell Rep</i> <b>16</b>(11):2953–66; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27626665 27626665]; doi: [https://dx.doi.org/10.1016/j.celrep.2016.08.023 10.1016/j.celrep.2016.08.023]; GPMDB: [http://gpmdb.org/data/keyword/27626665 719]. | #Worah K, Mathan TS, Vu Manh TP, Keerthikumar S, Schreibelt G, Tel J, Duiveman-de Boer T, Sköld AE, van Spriel AB, de Vries IJ, Huynen MA, Wessels HJ, Gloerich J, Dalod M, Lasonder E, Figdor CG, Buschow SI, (2016) "Proteomics of Human Dendritic Cell Subsets Reveals Subset-Specific Surface Markers and Differential Inflammasome Function." <i>Cell Rep</i> <b>16</b>(11):2953–66; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27626665 27626665]; doi: [https://dx.doi.org/10.1016/j.celrep.2016.08.023 10.1016/j.celrep.2016.08.023]; GPMDB: [http://gpmdb.org/data/keyword/27626665 719]. | ||
#Bennike TB, Ellingsen T, Glerup H, Bonderup OK, Carlsen TG, Meyer MK, Bøgsted M, Christiansen G, Birkelund S, Andersen V, Stensballe A, (2016) "Proteome Analysis of Rheumatoid Arthritis Gut Mucosa." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27627584 27627584]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00598 10.1021/acs.jproteome.6b00598]; GPMDB: [http://gpmdb.org/data/keyword/27627584 33]. | #Bennike TB, Ellingsen T, Glerup H, Bonderup OK, Carlsen TG, Meyer MK, Bøgsted M, Christiansen G, Birkelund S, Andersen V, Stensballe A, (2016) "Proteome Analysis of Rheumatoid Arthritis Gut Mucosa." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27627584 27627584]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00598 10.1021/acs.jproteome.6b00598]; GPMDB: [http://gpmdb.org/data/keyword/27627584 33]. | ||
- | #Altmann C, Hardt S, Fischer C, Heidler J, Lim HY, Häussler A, Albuquerque B, Zimmer B, Möser C, Behrends C, Koentgen F, Wittig I, Schmidt MH, Clement AM, Deller T, Tegeder I, (2016) "Progranulin overexpression in sensory neurons attenuates neuropathic pain in mice: Role of autophagy." <i>Neurobiol Dis</i> <b>96</b>:294–311; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27629805 27629805]; doi: [https://dx.doi.org/10.1016/j.nbd.2016.09.010 10.1016/j.nbd.2016.09.010]; GPMDB: [http://gpmdb.org/data/keyword/27629805 | + | #Altmann C, Hardt S, Fischer C, Heidler J, Lim HY, Häussler A, Albuquerque B, Zimmer B, Möser C, Behrends C, Koentgen F, Wittig I, Schmidt MH, Clement AM, Deller T, Tegeder I, (2016) "Progranulin overexpression in sensory neurons attenuates neuropathic pain in mice: Role of autophagy." <i>Neurobiol Dis</i> <b>96</b>:294–311; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27629805 27629805]; doi: [https://dx.doi.org/10.1016/j.nbd.2016.09.010 10.1016/j.nbd.2016.09.010]; GPMDB: [http://gpmdb.org/data/keyword/27629805 12]. |
#Musunuri S, Khoonsari PE, Mikus M, Wetterhall M, Häggmark-Mänberg A, Lannfelt L, Erlandsson A, Bergquist J, Ingelsson M, Shevchenko G, Nilsson P, Kultima K, (2016) "Increased Levels of Extracellular Microvesicle Markers and Decreased Levels of Endocytic/Exocytic Proteins in the Alzheimer's Disease Brain." <i>J Alzheimers Dis</i> <b>54</b>(4):1671–1686; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27636840 27636840]; doi: [https://dx.doi.org/10.3233/JAD-160271 10.3233/JAD-160271]; GPMDB: [http://gpmdb.org/data/keyword/27636840 107]. | #Musunuri S, Khoonsari PE, Mikus M, Wetterhall M, Häggmark-Mänberg A, Lannfelt L, Erlandsson A, Bergquist J, Ingelsson M, Shevchenko G, Nilsson P, Kultima K, (2016) "Increased Levels of Extracellular Microvesicle Markers and Decreased Levels of Endocytic/Exocytic Proteins in the Alzheimer's Disease Brain." <i>J Alzheimers Dis</i> <b>54</b>(4):1671–1686; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27636840 27636840]; doi: [https://dx.doi.org/10.3233/JAD-160271 10.3233/JAD-160271]; GPMDB: [http://gpmdb.org/data/keyword/27636840 107]. | ||
- | #Eyckerman S, Impens F, Van Quickelberghe E, Samyn N, Vandemoortele G, De Sutter D, Tavernier J, Gevaert K, (2016) "Intelligent Mixing of Proteomes for Elimination of False Positives in Affinity Purification-Mass Spectrometry." <i>J Proteome Res</i> <b>15</b>(10):3929–3937; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27640904 27640904]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00517 10.1021/acs.jproteome.6b00517]; GPMDB: [http://gpmdb.org/data/keyword/27640904 | + | #Eyckerman S, Impens F, Van Quickelberghe E, Samyn N, Vandemoortele G, De Sutter D, Tavernier J, Gevaert K, (2016) "Intelligent Mixing of Proteomes for Elimination of False Positives in Affinity Purification-Mass Spectrometry." <i>J Proteome Res</i> <b>15</b>(10):3929–3937; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27640904 27640904]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00517 10.1021/acs.jproteome.6b00517]; GPMDB: [http://gpmdb.org/data/keyword/27640904 95]. |
#Jean Beltran PM, Mathias RA, Cristea IM, (2016) "A Portrait of the Human Organelle Proteome In Space and Time during Cytomegalovirus Infection." <i>Cell Syst</i> <b>3</b>(4):361–373.e6; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27641956 27641956]; doi: [https://dx.doi.org/10.1016/j.cels.2016.08.012 10.1016/j.cels.2016.08.012]; GPMDB: [http://gpmdb.org/data/keyword/27641956 45]. | #Jean Beltran PM, Mathias RA, Cristea IM, (2016) "A Portrait of the Human Organelle Proteome In Space and Time during Cytomegalovirus Infection." <i>Cell Syst</i> <b>3</b>(4):361–373.e6; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27641956 27641956]; doi: [https://dx.doi.org/10.1016/j.cels.2016.08.012 10.1016/j.cels.2016.08.012]; GPMDB: [http://gpmdb.org/data/keyword/27641956 45]. | ||
#Athanason MG, Stevens SM Jr, Burkhardt BR, (2016) "Hepatic SILAC proteomic data from PANDER transgenic model." <i>Data Brief</i> <b>9</b>:159–62; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27642623 27642623]; doi: [https://dx.doi.org/10.1016/j.dib.2016.08.017 10.1016/j.dib.2016.08.017]; GPMDB: [http://gpmdb.org/data/keyword/27642623 18]. | #Athanason MG, Stevens SM Jr, Burkhardt BR, (2016) "Hepatic SILAC proteomic data from PANDER transgenic model." <i>Data Brief</i> <b>9</b>:159–62; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27642623 27642623]; doi: [https://dx.doi.org/10.1016/j.dib.2016.08.017 10.1016/j.dib.2016.08.017]; GPMDB: [http://gpmdb.org/data/keyword/27642623 18]. |
GPMDB was originally constructed to serve as a reference work for all publicly available proteomics generated using tandem mass spectrometry. Public data is downloaded and reanalyzed using the current version of X! Tandem. The result files generated by the reanalysis and the relevant metadata are imported into the database and made available through the associated web site, ftp site and REST interfaces.
Contents |
The following public data repositories are checked daily for new suitable raw data for reanalysis:
Data made available from specific large projects, such as CPTAC or the Human Proteome Atlas, are also included when they are made available. Every effort is made so that reanalyzed results from all data sources are made available within 48 hours of their being released. In addition, data from lab web sites, ftp sites and direct contributions through the GPM sites made available to researchers are imported into GPMDB as part of a daily incremental update process.
GPMDB has been in operation since Jan. 1, 2004. Several large data source repositories have come into existence and ceased activity in the period since that time. All of the data from those repositories (e.g., TRANCHE, Peptidome) were reanalyzed and stored in GPMDB and they are still available even though the source repository sites are no longer active.
Simply because data is made available does not mean that it will be included in GPMDB. The data must pass our internal automated quality control tests for its initial acceptance and it may be rejected subsequently because of either quality or originality concerns.
The following is a list of data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list was current, as of October 30, 2016.