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The GPM can now be used to find instances of proteins which have mutations.
The page, dblist_protein_mut.pl requires a protein accession number (e.g., ENSP00000343690, YGR254W) as input. Example output can be seen here for accession ENSP00000343690 and here for accession YGR254W.
The data returned by the search is by peptide sequence, ordered by the start position of the peptide within the protein. The columns returned are:
The peptide sequence may be followed by the text "(N more)". This means that more than one observation of this peptide sequence has been identified with a mutation. Clicking on the text will display the other peptide details, sorted by worsening log(e) score.
Please read Modified Protein Search.