GPM

Project

The Global Proteome Machine was set up so that scientists involved in proteomics using tandem mass spectrometry could use that data to analyze proteomes. This project is supported by the GPMO to improve the quality of analysis, make the results portable and to provide a common platform for testing and validating proteomics results.

Current GPM Sequences

The GPM is currently configured to use the following proteomes:

1. A. thaliana (ATH1, TAIR v. 6.0, Nov. 2005)
2. Cat (43.1, CAT, Jun 2006)
3. Chicken (49.2g, WASHUC2, Aug 2006)
4. Cow (43.3, BTAU 3.1, Aug 2006)
5. D. melanogaster (40.43, BDGP 4, Aug 2006)
6. Dog (40.1i, BROADD1, Aug 2006)
7. Elegant worm (49.180a, WS 180, Sep 2007)
8. Guinea pig (44.1a, cavPor2, Jun 2006)
9. Human (48.36j, NCBI 36, Dec 2007)
10. Mosquito (40.3c, AgamP3, Aug 2006)
11. Mouse (48.37a, NCBI m37, Dec 2007)
12. Rabbit (44.1b, RABBIT, May 2005)
13. Rat (44.34n, 3.4 RGSC, Aug 2006)
14. Rice (OSA1, Apr. 2004)
15. S. pombe (v. 19, June 2005)
16. Yeast (SGD, Dec 2005)
17. X. tropicalis (40.41a, JGI 4.1, Aug 2006)
18. Zebra fish (40.6a, WTSI Zv6, Aug 2006)

All Unigene resources (plant + Xenopus sp. + human + mouse + rat + cow) are updated every Monday evening, at 22:00 CST. Bacterial genomes are updated once a month, on the 3rd Wednesday of the month, with the update being complete by 20:00 CST.