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==Data from publications== | ==Data from publications== | ||
- | The following is a data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list was current, as of | + | The following is a data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list was current, as of June 4, 2016. |
#Lipton MS, Pasa-Tolic' L, Anderson GA, Anderson DJ, Auberry DL, Battista JR, Daly MJ, Fredrickson J, Hixson KK, Kostandarithes H, Masselon C, Markillie LM, Moore RJ, Romine MF, Shen Y, Stritmatter E, Tolic' N, Udseth HR, Venkateswaran A, Wong KK, Zhao R, Smith RD, (2002) "Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags." <i>Proc Natl Acad Sci U S A</i> <b>99</b>(17):11049–54; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/12177431 12177431]; doi: [https://dx.doi.org/10.1073/pnas.172170199 10.1073/pnas.172170199]; GPMDB: [http://gpmdb.org/data/keyword/12177431 498]. | #Lipton MS, Pasa-Tolic' L, Anderson GA, Anderson DJ, Auberry DL, Battista JR, Daly MJ, Fredrickson J, Hixson KK, Kostandarithes H, Masselon C, Markillie LM, Moore RJ, Romine MF, Shen Y, Stritmatter E, Tolic' N, Udseth HR, Venkateswaran A, Wong KK, Zhao R, Smith RD, (2002) "Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags." <i>Proc Natl Acad Sci U S A</i> <b>99</b>(17):11049–54; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/12177431 12177431]; doi: [https://dx.doi.org/10.1073/pnas.172170199 10.1073/pnas.172170199]; GPMDB: [http://gpmdb.org/data/keyword/12177431 498]. | ||
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#de Groot RE, Ganji RS, Bernatik O, Lloyd-Lewis B, Seipel K, Šedová K, Zdráhal Z, Dhople VM, Dale TC, Korswagen HC, Bryja V, (2014) "Huwe1-mediated ubiquitylation of dishevelled defines a negative feedback loop in the Wnt signaling pathway." <i>Sci Signal</i> <b>7</b>(317):ra26; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24643799 24643799]; doi: [https://dx.doi.org/10.1126/scisignal.2004985 10.1126/scisignal.2004985]; GPMDB: [http://gpmdb.org/data/keyword/24643799 10]. | #de Groot RE, Ganji RS, Bernatik O, Lloyd-Lewis B, Seipel K, Šedová K, Zdráhal Z, Dhople VM, Dale TC, Korswagen HC, Bryja V, (2014) "Huwe1-mediated ubiquitylation of dishevelled defines a negative feedback loop in the Wnt signaling pathway." <i>Sci Signal</i> <b>7</b>(317):ra26; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24643799 24643799]; doi: [https://dx.doi.org/10.1126/scisignal.2004985 10.1126/scisignal.2004985]; GPMDB: [http://gpmdb.org/data/keyword/24643799 10]. | ||
#Sahasrabuddhe NA, Barbhuiya MA, Bhunia S, Subbannayya T, Gowda H, Advani J, Shrivastav BR, Navani S, Leal P, Roa JC, Chaerkady R, Gupta S, Chatterjee A, Pandey A, Tiwari PK, (2014) "Identification of prosaposin and transgelin as potential biomarkers for gallbladder cancer using quantitative proteomics." <i>Biochem Biophys Res Commun</i> <b>446</b>(4):863–9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24657443 24657443]; doi: [https://dx.doi.org/10.1016/j.bbrc.2014.03.017 10.1016/j.bbrc.2014.03.017]; GPMDB: [http://gpmdb.org/data/keyword/24657443 29]. | #Sahasrabuddhe NA, Barbhuiya MA, Bhunia S, Subbannayya T, Gowda H, Advani J, Shrivastav BR, Navani S, Leal P, Roa JC, Chaerkady R, Gupta S, Chatterjee A, Pandey A, Tiwari PK, (2014) "Identification of prosaposin and transgelin as potential biomarkers for gallbladder cancer using quantitative proteomics." <i>Biochem Biophys Res Commun</i> <b>446</b>(4):863–9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24657443 24657443]; doi: [https://dx.doi.org/10.1016/j.bbrc.2014.03.017 10.1016/j.bbrc.2014.03.017]; GPMDB: [http://gpmdb.org/data/keyword/24657443 29]. | ||
- | |||
#Kume H, Muraoka S, Kuga T, Adachi J, Narumi R, Watanabe S, Kuwano M, Kodera Y, Matsushita K, Fukuoka J, Masuda T, Ishihama Y, Matsubara H, Nomura F, Tomonaga T, (2014) "Discovery of colorectal cancer biomarker candidates by membrane proteomic analysis and subsequent verification using selected reaction monitoring (SRM) and tissue microarray (TMA) analysis." <i>Mol Cell Proteomics</i> <b>13</b>(6):1471–84; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24687888 24687888]; doi: [https://dx.doi.org/10.1074/mcp.M113.037093 10.1074/mcp.M113.037093]; GPMDB: [http://gpmdb.org/data/keyword/24687888 6]. | #Kume H, Muraoka S, Kuga T, Adachi J, Narumi R, Watanabe S, Kuwano M, Kodera Y, Matsushita K, Fukuoka J, Masuda T, Ishihama Y, Matsubara H, Nomura F, Tomonaga T, (2014) "Discovery of colorectal cancer biomarker candidates by membrane proteomic analysis and subsequent verification using selected reaction monitoring (SRM) and tissue microarray (TMA) analysis." <i>Mol Cell Proteomics</i> <b>13</b>(6):1471–84; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24687888 24687888]; doi: [https://dx.doi.org/10.1074/mcp.M113.037093 10.1074/mcp.M113.037093]; GPMDB: [http://gpmdb.org/data/keyword/24687888 6]. | ||
#Guo X, Trudgian DC, Lemoff A, Yadavalli S, Mirzaei H, (2014) "Confetti: a multiprotease map of the HeLa proteome for comprehensive proteomics." <i>Mol Cell Proteomics</i> <b>13</b>(6):1573–84; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24696503 24696503]; doi: [https://dx.doi.org/10.1074/mcp.M113.035170 10.1074/mcp.M113.035170]; GPMDB: [http://gpmdb.org/data/keyword/24696503 99]. | #Guo X, Trudgian DC, Lemoff A, Yadavalli S, Mirzaei H, (2014) "Confetti: a multiprotease map of the HeLa proteome for comprehensive proteomics." <i>Mol Cell Proteomics</i> <b>13</b>(6):1573–84; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24696503 24696503]; doi: [https://dx.doi.org/10.1074/mcp.M113.035170 10.1074/mcp.M113.035170]; GPMDB: [http://gpmdb.org/data/keyword/24696503 99]. | ||
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#Poulsen ET, Dyrlund TF, Runager K, Scavenius C, Krogager TP, Højrup P, Thøgersen IB, Sanggaard KW, Vorum H, Hjortdal J, Enghild JJ, (2014) "Proteomics of Fuchs' endothelial corneal dystrophy support that the extracellular matrix of Descemet's membrane is disordered." <i>J Proteome Res</i> <b>13</b>(11):4659–67; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24846694 24846694]; doi: [https://dx.doi.org/10.1021/pr500252r 10.1021/pr500252r]; GPMDB: [http://gpmdb.org/data/keyword/24846694 66]. | #Poulsen ET, Dyrlund TF, Runager K, Scavenius C, Krogager TP, Højrup P, Thøgersen IB, Sanggaard KW, Vorum H, Hjortdal J, Enghild JJ, (2014) "Proteomics of Fuchs' endothelial corneal dystrophy support that the extracellular matrix of Descemet's membrane is disordered." <i>J Proteome Res</i> <b>13</b>(11):4659–67; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24846694 24846694]; doi: [https://dx.doi.org/10.1021/pr500252r 10.1021/pr500252r]; GPMDB: [http://gpmdb.org/data/keyword/24846694 66]. | ||
#Leong HS, Dawson K, Wirth C, Li Y, Connolly Y, Smith DL, Wilkinson CR, Miller CJ, (2014) "A global non-coding RNA system modulates fission yeast protein levels in response to stress." <i>Nat Commun</i> <b>5</b>:3947; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24853205 24853205]; doi: [https://dx.doi.org/10.1038/ncomms4947 10.1038/ncomms4947]; GPMDB: [http://gpmdb.org/data/keyword/24853205 60]. | #Leong HS, Dawson K, Wirth C, Li Y, Connolly Y, Smith DL, Wilkinson CR, Miller CJ, (2014) "A global non-coding RNA system modulates fission yeast protein levels in response to stress." <i>Nat Commun</i> <b>5</b>:3947; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24853205 24853205]; doi: [https://dx.doi.org/10.1038/ncomms4947 10.1038/ncomms4947]; GPMDB: [http://gpmdb.org/data/keyword/24853205 60]. | ||
+ | #Kim MS, Pinto SM, Getnet D, Nirujogi RS, Manda SS, Chaerkady R, Madugundu AK, Kelkar DS, Isserlin R, Jain S, Thomas JK, Muthusamy B, Leal-Rojas P, Kumar P, Sahasrabuddhe NA, Balakrishnan L, Advani J, George B, Renuse S, Selvan LD, Patil AH, Nanjappa V, Radhakrishnan A, Prasad S, Subbannayya T, Raju R, Kumar M, Sreenivasamurthy SK, Marimuthu A, Sathe GJ, Chavan S, Datta KK, Subbannayya Y, Sahu A, Yelamanchi SD, Jayaram S, Rajagopalan P, Sharma J, Murthy KR, Syed N, Goel R, Khan AA, Ahmad S, Dey G, Mudgal K, Chatterjee A, Huang TC, Zhong J, Wu X, Shaw PG, Freed D, Zahari MS, Mukherjee KK, Shankar S, Mahadevan A, Lam H, Mitchell CJ, Shankar SK, Satishchandra P, Schroeder JT, Sirdeshmukh R, Maitra A, Leach SD, Drake CG, Halushka MK, Prasad TS, Hruban RH, Kerr CL, Bader GD, Iacobuzio-Donahue CA, Gowda H, Pandey A, (2014) "A draft map of the human proteome." <i>Nature</i> <b>509</b>(7502):575–81; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24870542 24870542]; doi: [https://dx.doi.org/10.1038/nature13302 10.1038/nature13302]; GPMDB: [http://gpmdb.org/data/keyword/24870542 88]. | ||
#Wilhelm M, Schlegl J, Hahne H, Moghaddas Gholami A, Lieberenz M, Savitski MM, Ziegler E, Butzmann L, Gessulat S, Marx H, Mathieson T, Lemeer S, Schnatbaum K, Reimer U, Wenschuh H, Mollenhauer M, Slotta-Huspenina J, Boese JH, Bantscheff M, Gerstmair A, Faerber F, Kuster B, (2014) "Mass-spectrometry-based draft of the human proteome." <i>Nature</i> <b>509</b>(7502):582–7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24870543 24870543]; doi: [https://dx.doi.org/10.1038/nature13319 10.1038/nature13319]; GPMDB: [http://gpmdb.org/data/keyword/24870543 1257]. | #Wilhelm M, Schlegl J, Hahne H, Moghaddas Gholami A, Lieberenz M, Savitski MM, Ziegler E, Butzmann L, Gessulat S, Marx H, Mathieson T, Lemeer S, Schnatbaum K, Reimer U, Wenschuh H, Mollenhauer M, Slotta-Huspenina J, Boese JH, Bantscheff M, Gerstmair A, Faerber F, Kuster B, (2014) "Mass-spectrometry-based draft of the human proteome." <i>Nature</i> <b>509</b>(7502):582–7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24870543 24870543]; doi: [https://dx.doi.org/10.1038/nature13319 10.1038/nature13319]; GPMDB: [http://gpmdb.org/data/keyword/24870543 1257]. | ||
#van der Post S, Hansson GC, (2014) "Membrane protein profiling of human colon reveals distinct regional differences." <i>Mol Cell Proteomics</i> <b>13</b>(9):2277–87; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24889196 24889196]; doi: [https://dx.doi.org/10.1074/mcp.M114.040204 10.1074/mcp.M114.040204]; GPMDB: [http://gpmdb.org/data/keyword/24889196 16]. | #van der Post S, Hansson GC, (2014) "Membrane protein profiling of human colon reveals distinct regional differences." <i>Mol Cell Proteomics</i> <b>13</b>(9):2277–87; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24889196 24889196]; doi: [https://dx.doi.org/10.1074/mcp.M114.040204 10.1074/mcp.M114.040204]; GPMDB: [http://gpmdb.org/data/keyword/24889196 16]. | ||
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#Dinets A, Pernemalm M, Kjellin H, Sviatoha V, Sofiadis A, Juhlin CC, Zedenius J, Larsson C, Lehtiö J, Höög A, (2015) "Differential protein expression profiles of cyst fluid from papillary thyroid carcinoma and benign thyroid lesions." <i>PLoS One</i> <b>10</b>(5):e0126472; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25978681 25978681]; doi: [https://dx.doi.org/10.1371/journal.pone.0126472 10.1371/journal.pone.0126472]; GPMDB: [http://gpmdb.org/data/keyword/25978681 2]. | #Dinets A, Pernemalm M, Kjellin H, Sviatoha V, Sofiadis A, Juhlin CC, Zedenius J, Larsson C, Lehtiö J, Höög A, (2015) "Differential protein expression profiles of cyst fluid from papillary thyroid carcinoma and benign thyroid lesions." <i>PLoS One</i> <b>10</b>(5):e0126472; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25978681 25978681]; doi: [https://dx.doi.org/10.1371/journal.pone.0126472 10.1371/journal.pone.0126472]; GPMDB: [http://gpmdb.org/data/keyword/25978681 2]. | ||
#Campos A, Díaz R, Martínez-Bartolomé S, Sierra J, Gallardo O, Sabidó E, López-Lucendo M, Ignacio Casal J, Pasquarello C, Scherl A, Chiva C, Borras E, Odena A, Elortza F, Azkargorta M, Ibarrola N, Canals F, Albar JP, Oliveira E, (2015) "Multicenter experiment for quality control of peptide-centric LC-MS/MS analysis - A longitudinal performance assessment with nLC coupled to orbitrap MS analyzers." <i>J Proteomics</i> <b>127</b>(Pt B):264–74; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25982386 25982386]; doi: [https://dx.doi.org/10.1016/j.jprot.2015.05.012 10.1016/j.jprot.2015.05.012]; GPMDB: [http://gpmdb.org/data/keyword/25982386 112]. | #Campos A, Díaz R, Martínez-Bartolomé S, Sierra J, Gallardo O, Sabidó E, López-Lucendo M, Ignacio Casal J, Pasquarello C, Scherl A, Chiva C, Borras E, Odena A, Elortza F, Azkargorta M, Ibarrola N, Canals F, Albar JP, Oliveira E, (2015) "Multicenter experiment for quality control of peptide-centric LC-MS/MS analysis - A longitudinal performance assessment with nLC coupled to orbitrap MS analyzers." <i>J Proteomics</i> <b>127</b>(Pt B):264–74; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25982386 25982386]; doi: [https://dx.doi.org/10.1016/j.jprot.2015.05.012 10.1016/j.jprot.2015.05.012]; GPMDB: [http://gpmdb.org/data/keyword/25982386 112]. | ||
+ | #Sjölin-Goodfellow H, Frushicheva MP, Ji Q, Cheng DA, Kadlecek TA, Cantor AJ, Kuriyan J, Chakraborty AK, Salomon AR, Weiss A, (2015) "The catalytic activity of the kinase ZAP-70 mediates basal signaling and negative feedback of the T cell receptor pathway." <i>Sci Signal</i> <b>8</b>(377):ra49; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25990959 25990959]; doi: [https://dx.doi.org/10.1126/scisignal.2005596 10.1126/scisignal.2005596]; GPMDB: [http://gpmdb.org/data/keyword/25990959 20]. | ||
#Graessel A, Hauck SM, von Toerne C, Kloppmann E, Goldberg T, Koppensteiner H, Schindler M, Knapp B, Krause L, Dietz K, Schmidt-Weber CB, Suttner K, (2015) "A Combined Omics Approach to Generate the Surface Atlas of Human Naive CD4+ T Cells during Early T-Cell Receptor Activation." <i>Mol Cell Proteomics</i> <b>14</b>(8):2085–102; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25991687 25991687]; doi: [https://dx.doi.org/10.1074/mcp.M114.045690 10.1074/mcp.M114.045690]; GPMDB: [http://gpmdb.org/data/keyword/25991687 48]. | #Graessel A, Hauck SM, von Toerne C, Kloppmann E, Goldberg T, Koppensteiner H, Schindler M, Knapp B, Krause L, Dietz K, Schmidt-Weber CB, Suttner K, (2015) "A Combined Omics Approach to Generate the Surface Atlas of Human Naive CD4+ T Cells during Early T-Cell Receptor Activation." <i>Mol Cell Proteomics</i> <b>14</b>(8):2085–102; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25991687 25991687]; doi: [https://dx.doi.org/10.1074/mcp.M114.045690 10.1074/mcp.M114.045690]; GPMDB: [http://gpmdb.org/data/keyword/25991687 48]. | ||
#Bennike TB, Carlsen TG, Ellingsen T, Bonderup OK, Glerup H, Bøgsted M, Christiansen G, Birkelund S, Stensballe A, Andersen V, (2015) "Neutrophil Extracellular Traps in Ulcerative Colitis: A Proteome Analysis of Intestinal Biopsies." <i>Inflamm Bowel Dis</i> <b>21</b>(9):2052–67; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25993694 25993694]; doi: [https://dx.doi.org/10.1097/MIB.0000000000000460 10.1097/MIB.0000000000000460]; GPMDB: [http://gpmdb.org/data/keyword/25993694 60]. | #Bennike TB, Carlsen TG, Ellingsen T, Bonderup OK, Glerup H, Bøgsted M, Christiansen G, Birkelund S, Stensballe A, Andersen V, (2015) "Neutrophil Extracellular Traps in Ulcerative Colitis: A Proteome Analysis of Intestinal Biopsies." <i>Inflamm Bowel Dis</i> <b>21</b>(9):2052–67; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25993694 25993694]; doi: [https://dx.doi.org/10.1097/MIB.0000000000000460 10.1097/MIB.0000000000000460]; GPMDB: [http://gpmdb.org/data/keyword/25993694 60]. | ||
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#Chen Y, Yang F, Sun Z, Wang Q, Mi K, Deng H, (2015) "Proteomic Analysis of Drug-Resistant Mycobacteria: Co-Evolution of Copper and INH Resistance." <i>PLoS One</i> <b>10</b>(6):e0127788; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26035302 26035302]; doi: [https://dx.doi.org/10.1371/journal.pone.0127788 10.1371/journal.pone.0127788]; GPMDB: [http://gpmdb.org/data/keyword/26035302 1]. | #Chen Y, Yang F, Sun Z, Wang Q, Mi K, Deng H, (2015) "Proteomic Analysis of Drug-Resistant Mycobacteria: Co-Evolution of Copper and INH Resistance." <i>PLoS One</i> <b>10</b>(6):e0127788; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26035302 26035302]; doi: [https://dx.doi.org/10.1371/journal.pone.0127788 10.1371/journal.pone.0127788]; GPMDB: [http://gpmdb.org/data/keyword/26035302 1]. | ||
#Aeberhard L, Banhart S, Fischer M, Jehmlich N, Rose L, Koch S, Laue M, Renard BY, Schmidt F, Heuer D, (2015) "The Proteome of the Isolated Chlamydia trachomatis Containing Vacuole Reveals a Complex Trafficking Platform Enriched for Retromer Components." <i>PLoS Pathog</i> <b>11</b>(6):e1004883; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26042774 26042774]; doi: [https://dx.doi.org/10.1371/journal.ppat.1004883 10.1371/journal.ppat.1004883]; GPMDB: [http://gpmdb.org/data/keyword/26042774 24]. | #Aeberhard L, Banhart S, Fischer M, Jehmlich N, Rose L, Koch S, Laue M, Renard BY, Schmidt F, Heuer D, (2015) "The Proteome of the Isolated Chlamydia trachomatis Containing Vacuole Reveals a Complex Trafficking Platform Enriched for Retromer Components." <i>PLoS Pathog</i> <b>11</b>(6):e1004883; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26042774 26042774]; doi: [https://dx.doi.org/10.1371/journal.ppat.1004883 10.1371/journal.ppat.1004883]; GPMDB: [http://gpmdb.org/data/keyword/26042774 24]. | ||
+ | #Helou YA, Petrashen AP, Salomon AR, (2015) "Vav1 Regulates T-Cell Activation through a Feedback Mechanism and Crosstalk between the T-Cell Receptor and CD28." <i>J Proteome Res</i> <b>14</b>(7):2963–75; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26043137 26043137]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00340 10.1021/acs.jproteome.5b00340]; GPMDB: [http://gpmdb.org/data/keyword/26043137 40]. | ||
#Marie P, Labas V, Brionne A, Harichaux G, Hennequet-Antier C, Rodriguez-Navarro AB, Nys Y, Gautron J, (2015) "Quantitative proteomics provides new insights into chicken eggshell matrix protein functions during the primary events of mineralisation and the active calcification phase." <i>J Proteomics</i> <b>126</b>:140–54; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26049031 26049031]; doi: [https://dx.doi.org/10.1016/j.jprot.2015.05.034 10.1016/j.jprot.2015.05.034]; GPMDB: [http://gpmdb.org/data/keyword/26049031 180]. | #Marie P, Labas V, Brionne A, Harichaux G, Hennequet-Antier C, Rodriguez-Navarro AB, Nys Y, Gautron J, (2015) "Quantitative proteomics provides new insights into chicken eggshell matrix protein functions during the primary events of mineralisation and the active calcification phase." <i>J Proteomics</i> <b>126</b>:140–54; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26049031 26049031]; doi: [https://dx.doi.org/10.1016/j.jprot.2015.05.034 10.1016/j.jprot.2015.05.034]; GPMDB: [http://gpmdb.org/data/keyword/26049031 180]. | ||
#Higgins R, Gendron JM, Rising L, Mak R, Webb K, Kaiser SE, Zuzow N, Riviere P, Yang B, Fenech E, Tang X, Lindsay SA, Christianson JC, Hampton RY, Wasserman SA, Bennett EJ, (2015) "The Unfolded Protein Response Triggers Site-Specific Regulatory Ubiquitylation of 40S Ribosomal Proteins." <i>Mol Cell</i> <b>59</b>(1):35–49; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26051182 26051182]; doi: [https://dx.doi.org/10.1016/j.molcel.2015.04.026 10.1016/j.molcel.2015.04.026]; GPMDB: [http://gpmdb.org/data/keyword/26051182 54]. | #Higgins R, Gendron JM, Rising L, Mak R, Webb K, Kaiser SE, Zuzow N, Riviere P, Yang B, Fenech E, Tang X, Lindsay SA, Christianson JC, Hampton RY, Wasserman SA, Bennett EJ, (2015) "The Unfolded Protein Response Triggers Site-Specific Regulatory Ubiquitylation of 40S Ribosomal Proteins." <i>Mol Cell</i> <b>59</b>(1):35–49; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26051182 26051182]; doi: [https://dx.doi.org/10.1016/j.molcel.2015.04.026 10.1016/j.molcel.2015.04.026]; GPMDB: [http://gpmdb.org/data/keyword/26051182 54]. | ||
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#Zheng B, Zhao D, Zhang P, Shen C, Guo Y, Zhou T, Guo X, Zhou Z, Sha J, (2015) "Quantitative Proteomics Reveals the Essential Roles of Stromal Interaction Molecule 1 (STIM1) in the Testicular Cord Formation in Mouse Testis." <i>Mol Cell Proteomics</i> <b>14</b>(10):2682–91; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26199344 26199344]; doi: [https://dx.doi.org/10.1074/mcp.M115.049569 10.1074/mcp.M115.049569]; GPMDB: [http://gpmdb.org/data/keyword/26199344 2]. | #Zheng B, Zhao D, Zhang P, Shen C, Guo Y, Zhou T, Guo X, Zhou Z, Sha J, (2015) "Quantitative Proteomics Reveals the Essential Roles of Stromal Interaction Molecule 1 (STIM1) in the Testicular Cord Formation in Mouse Testis." <i>Mol Cell Proteomics</i> <b>14</b>(10):2682–91; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26199344 26199344]; doi: [https://dx.doi.org/10.1074/mcp.M115.049569 10.1074/mcp.M115.049569]; GPMDB: [http://gpmdb.org/data/keyword/26199344 2]. | ||
#Wang IX, Ramrattan G, Cheung VG, (2015) "Genetic variation in insulin-induced kinase signaling." <i>Mol Syst Biol</i> <b>11</b>(7):820; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26202599 26202599]; GPMDB: [http://gpmdb.org/data/keyword/26202599 46]. | #Wang IX, Ramrattan G, Cheung VG, (2015) "Genetic variation in insulin-induced kinase signaling." <i>Mol Syst Biol</i> <b>11</b>(7):820; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26202599 26202599]; GPMDB: [http://gpmdb.org/data/keyword/26202599 46]. | ||
+ | #Corradini E, Klaasse G, Leurs U, Heck AJ, Martin NI, Scholten A, (2015) "Charting the interactome of PDE3A in human cells using an IBMX based chemical proteomics approach." <i>Mol Biosyst</i> <b>11</b>(10):2786–97; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26205238 26205238]; doi: [https://dx.doi.org/10.1039/c5mb00142k 10.1039/c5mb00142k]; GPMDB: [http://gpmdb.org/data/keyword/26205238 47]. | ||
#Courtney DG, Poulsen ET, Kennedy S, Moore JE, Atkinson SD, Maurizi E, Nesbit MA, Moore CB, Enghild JJ, (2015) "Protein Composition of TGFBI-R124C- and TGFBI-R555W-Associated Aggregates Suggests Multiple Mechanisms Leading to Lattice and Granular Corneal Dystrophy." <i>Invest Ophthalmol Vis Sci</i> <b>56</b>(8):4653–61; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26207300 26207300]; doi: [https://dx.doi.org/10.1167/iovs.15-16922 10.1167/iovs.15-16922]; GPMDB: [http://gpmdb.org/data/keyword/26207300 39]. | #Courtney DG, Poulsen ET, Kennedy S, Moore JE, Atkinson SD, Maurizi E, Nesbit MA, Moore CB, Enghild JJ, (2015) "Protein Composition of TGFBI-R124C- and TGFBI-R555W-Associated Aggregates Suggests Multiple Mechanisms Leading to Lattice and Granular Corneal Dystrophy." <i>Invest Ophthalmol Vis Sci</i> <b>56</b>(8):4653–61; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26207300 26207300]; doi: [https://dx.doi.org/10.1167/iovs.15-16922 10.1167/iovs.15-16922]; GPMDB: [http://gpmdb.org/data/keyword/26207300 39]. | ||
#Díez P, Droste C, Dégano RM, González-Muñoz M, Ibarrola N, Pérez-Andrés M, Garin-Muga A, Segura V, Marko-Varga G, LaBaer J, Orfao A, Corrales FJ, De Las Rivas J, Fuentes M, (2015) "Integration of Proteomics and Transcriptomics Data Sets for the Analysis of a Lymphoma B-Cell Line in the Context of the Chromosome-Centric Human Proteome Project." <i>J Proteome Res</i> <b>14</b>(9):3530–40; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26216070 26216070]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00474 10.1021/acs.jproteome.5b00474]; GPMDB: [http://gpmdb.org/data/keyword/26216070 60]. | #Díez P, Droste C, Dégano RM, González-Muñoz M, Ibarrola N, Pérez-Andrés M, Garin-Muga A, Segura V, Marko-Varga G, LaBaer J, Orfao A, Corrales FJ, De Las Rivas J, Fuentes M, (2015) "Integration of Proteomics and Transcriptomics Data Sets for the Analysis of a Lymphoma B-Cell Line in the Context of the Chromosome-Centric Human Proteome Project." <i>J Proteome Res</i> <b>14</b>(9):3530–40; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26216070 26216070]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00474 10.1021/acs.jproteome.5b00474]; GPMDB: [http://gpmdb.org/data/keyword/26216070 60]. | ||
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#Shrivastava AN, Redeker V, Fritz N, Pieri L, Almeida LG, Spolidoro M, Liebmann T, Bousset L, Renner M, Léna C, Aperia A, Melki R, Triller A, (2015) "α-synuclein assemblies sequester neuronal α3-Na+/K+-ATPase and impair Na+ gradient." <i>EMBO J</i> <b>34</b>(19):2408–23; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26323479 26323479]; doi: [https://dx.doi.org/10.15252/embj.201591397 10.15252/embj.201591397]; GPMDB: [http://gpmdb.org/data/keyword/26323479 23]. | #Shrivastava AN, Redeker V, Fritz N, Pieri L, Almeida LG, Spolidoro M, Liebmann T, Bousset L, Renner M, Léna C, Aperia A, Melki R, Triller A, (2015) "α-synuclein assemblies sequester neuronal α3-Na+/K+-ATPase and impair Na+ gradient." <i>EMBO J</i> <b>34</b>(19):2408–23; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26323479 26323479]; doi: [https://dx.doi.org/10.15252/embj.201591397 10.15252/embj.201591397]; GPMDB: [http://gpmdb.org/data/keyword/26323479 23]. | ||
#Chu XL, Feng MG, Ying SH, (2016) "Qualitative ubiquitome unveils the potential significances of protein lysine ubiquitination in hyphal growth of Aspergillus nidulans." <i>Curr Genet</i> <b>62</b>(1):191–201; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26328806 26328806]; doi: [https://dx.doi.org/10.1007/s00294-015-0517-7 10.1007/s00294-015-0517-7]; GPMDB: [http://gpmdb.org/data/keyword/26328806 1]. | #Chu XL, Feng MG, Ying SH, (2016) "Qualitative ubiquitome unveils the potential significances of protein lysine ubiquitination in hyphal growth of Aspergillus nidulans." <i>Curr Genet</i> <b>62</b>(1):191–201; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26328806 26328806]; doi: [https://dx.doi.org/10.1007/s00294-015-0517-7 10.1007/s00294-015-0517-7]; GPMDB: [http://gpmdb.org/data/keyword/26328806 1]. | ||
- | #Wu X, Zahari MS, Renuse S, Nirujogi RS, Kim MS, Manda SS, Stearns V, Gabrielson E, Sukumar S, Pandey A, (2015) "Phosphoproteomic Analysis Identifies Focal Adhesion Kinase 2 (FAK2) as a Potential Therapeutic Target for Tamoxifen Resistance in Breast Cancer." <i>Mol Cell Proteomics</i> <b>14</b>(11):2887–900; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26330541 26330541]; doi: [https://dx.doi.org/10.1074/mcp.M115.050484 10.1074/mcp.M115.050484]; GPMDB: [http://gpmdb.org/data/keyword/26330541 | + | #Wu X, Zahari MS, Renuse S, Nirujogi RS, Kim MS, Manda SS, Stearns V, Gabrielson E, Sukumar S, Pandey A, (2015) "Phosphoproteomic Analysis Identifies Focal Adhesion Kinase 2 (FAK2) as a Potential Therapeutic Target for Tamoxifen Resistance in Breast Cancer." <i>Mol Cell Proteomics</i> <b>14</b>(11):2887–900; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26330541 26330541]; doi: [https://dx.doi.org/10.1074/mcp.M115.050484 10.1074/mcp.M115.050484]; GPMDB: [http://gpmdb.org/data/keyword/26330541 29]. |
#Duhamel M, Rodet F, Delhem N, Vanden Abeele F, Kobeissy F, Nataf S, Pays L, Desjardins R, Gagnon H, Wisztorski M, Fournier I, Day R, Salzet M, (2015) "Molecular Consequences of Proprotein Convertase 1/3 (PC1/3) Inhibition in Macrophages for Application to Cancer Immunotherapy: A Proteomic Study." <i>Mol Cell Proteomics</i> <b>14</b>(11):2857–77; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26330543 26330543]; doi: [https://dx.doi.org/10.1074/mcp.M115.052480 10.1074/mcp.M115.052480]; GPMDB: [http://gpmdb.org/data/keyword/26330543 18]. | #Duhamel M, Rodet F, Delhem N, Vanden Abeele F, Kobeissy F, Nataf S, Pays L, Desjardins R, Gagnon H, Wisztorski M, Fournier I, Day R, Salzet M, (2015) "Molecular Consequences of Proprotein Convertase 1/3 (PC1/3) Inhibition in Macrophages for Application to Cancer Immunotherapy: A Proteomic Study." <i>Mol Cell Proteomics</i> <b>14</b>(11):2857–77; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26330543 26330543]; doi: [https://dx.doi.org/10.1074/mcp.M115.052480 10.1074/mcp.M115.052480]; GPMDB: [http://gpmdb.org/data/keyword/26330543 18]. | ||
#White CH, Johnston HE, Moesker B, Manousopoulou A, Margolis DM, Richman DD, Spina CA, Garbis SD, Woelk CH, Beliakova-Bethell N, (2015) "Mixed effects of suberoylanilide hydroxamic acid (SAHA) on the host transcriptome and proteome and their implications for HIV reactivation from latency." <i>Antiviral Res</i> <b>123</b>:78–85; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26343910 26343910]; doi: [https://dx.doi.org/10.1016/j.antiviral.2015.09.002 10.1016/j.antiviral.2015.09.002]; GPMDB: [http://gpmdb.org/data/keyword/26343910 172]. | #White CH, Johnston HE, Moesker B, Manousopoulou A, Margolis DM, Richman DD, Spina CA, Garbis SD, Woelk CH, Beliakova-Bethell N, (2015) "Mixed effects of suberoylanilide hydroxamic acid (SAHA) on the host transcriptome and proteome and their implications for HIV reactivation from latency." <i>Antiviral Res</i> <b>123</b>:78–85; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26343910 26343910]; doi: [https://dx.doi.org/10.1016/j.antiviral.2015.09.002 10.1016/j.antiviral.2015.09.002]; GPMDB: [http://gpmdb.org/data/keyword/26343910 172]. | ||
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#Liu T, Tian CF, Chen WX, (2015) "Site-Specific Ser/Thr/Tyr Phosphoproteome of Sinorhizobium meliloti at Stationary Phase." <i>PLoS One</i> <b>10</b>(9):e0139143; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26401955 26401955]; doi: [https://dx.doi.org/10.1371/journal.pone.0139143 10.1371/journal.pone.0139143]; GPMDB: [http://gpmdb.org/data/keyword/26401955 2]. | #Liu T, Tian CF, Chen WX, (2015) "Site-Specific Ser/Thr/Tyr Phosphoproteome of Sinorhizobium meliloti at Stationary Phase." <i>PLoS One</i> <b>10</b>(9):e0139143; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26401955 26401955]; doi: [https://dx.doi.org/10.1371/journal.pone.0139143 10.1371/journal.pone.0139143]; GPMDB: [http://gpmdb.org/data/keyword/26401955 2]. | ||
#Li S, Dislich B, Brakebusch CH, Lichtenthaler SF, Brocker T, (2015) "Control of Homeostasis and Dendritic Cell Survival by the GTPase RhoA." <i>J Immunol</i> <b>195</b>(9):4244–56; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26408665 26408665]; doi: [https://dx.doi.org/10.4049/jimmunol.1500676 10.4049/jimmunol.1500676]; GPMDB: [http://gpmdb.org/data/keyword/26408665 60]. | #Li S, Dislich B, Brakebusch CH, Lichtenthaler SF, Brocker T, (2015) "Control of Homeostasis and Dendritic Cell Survival by the GTPase RhoA." <i>J Immunol</i> <b>195</b>(9):4244–56; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26408665 26408665]; doi: [https://dx.doi.org/10.4049/jimmunol.1500676 10.4049/jimmunol.1500676]; GPMDB: [http://gpmdb.org/data/keyword/26408665 60]. | ||
- | #Glatter T, Ahrné E, Schmidt A, (2015) "Comparison of Different Sample Preparation Protocols Reveals Lysis Buffer-Specific Extraction Biases in Gram-Negative Bacteria and Human Cells." <i>J Proteome Res</i> <b>14</b>(11):4472–85; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26412744 26412744]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00654 10.1021/acs.jproteome.5b00654]; GPMDB: [http://gpmdb.org/data/keyword/26412744 | + | #Glatter T, Ahrné E, Schmidt A, (2015) "Comparison of Different Sample Preparation Protocols Reveals Lysis Buffer-Specific Extraction Biases in Gram-Negative Bacteria and Human Cells." <i>J Proteome Res</i> <b>14</b>(11):4472–85; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26412744 26412744]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00654 10.1021/acs.jproteome.5b00654]; GPMDB: [http://gpmdb.org/data/keyword/26412744 718]. |
#Hadley KC, Rakhit R, Guo H, Sun Y, Jonkman JE, McLaurin J, Hazrati LN, Emili A, Chakrabartty A, (2015) "Determining composition of micron-scale protein deposits in neurodegenerative disease by spatially targeted optical microproteomics." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26418743 26418743]; doi: [https://dx.doi.org/10.7554/eLife.09579 10.7554/eLife.09579]; GPMDB: [http://gpmdb.org/data/keyword/26418743 12]. | #Hadley KC, Rakhit R, Guo H, Sun Y, Jonkman JE, McLaurin J, Hazrati LN, Emili A, Chakrabartty A, (2015) "Determining composition of micron-scale protein deposits in neurodegenerative disease by spatially targeted optical microproteomics." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26418743 26418743]; doi: [https://dx.doi.org/10.7554/eLife.09579 10.7554/eLife.09579]; GPMDB: [http://gpmdb.org/data/keyword/26418743 12]. | ||
#Gallart-Palau X, Serra A, Wong AS, Sandin S, Lai MK, Chen CP, Kon OL, Sze SK, (2015) "Extracellular vesicles are rapidly purified from human plasma by PRotein Organic Solvent PRecipitation (PROSPR)." <i>Sci Rep</i> <b>5</b>:14664; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26419333 26419333]; doi: [https://dx.doi.org/10.1038/srep14664 10.1038/srep14664]; GPMDB: [http://gpmdb.org/data/keyword/26419333 172]. | #Gallart-Palau X, Serra A, Wong AS, Sandin S, Lai MK, Chen CP, Kon OL, Sze SK, (2015) "Extracellular vesicles are rapidly purified from human plasma by PRotein Organic Solvent PRecipitation (PROSPR)." <i>Sci Rep</i> <b>5</b>:14664; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26419333 26419333]; doi: [https://dx.doi.org/10.1038/srep14664 10.1038/srep14664]; GPMDB: [http://gpmdb.org/data/keyword/26419333 172]. | ||
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#Padden J, Ahrens M, Kälsch J, Bertram S, Megger DA, Bracht T, Eisenacher M, Kocabayoglu P, Meyer HE, Sipos B, Baba HA, Sitek B, (2016) "Immunohistochemical Markers Distinguishing Cholangiocellular Carcinoma (CCC) from Pancreatic Ductal Adenocarcinoma (PDAC) Discovered by Proteomic Analysis of Microdissected Cells." <i>Mol Cell Proteomics</i> <b>15</b>(3):1072–82; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26644413 26644413]; doi: [https://dx.doi.org/10.1074/mcp.M115.054585 10.1074/mcp.M115.054585]; GPMDB: [http://gpmdb.org/data/keyword/26644413 66]. | #Padden J, Ahrens M, Kälsch J, Bertram S, Megger DA, Bracht T, Eisenacher M, Kocabayoglu P, Meyer HE, Sipos B, Baba HA, Sitek B, (2016) "Immunohistochemical Markers Distinguishing Cholangiocellular Carcinoma (CCC) from Pancreatic Ductal Adenocarcinoma (PDAC) Discovered by Proteomic Analysis of Microdissected Cells." <i>Mol Cell Proteomics</i> <b>15</b>(3):1072–82; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26644413 26644413]; doi: [https://dx.doi.org/10.1074/mcp.M115.054585 10.1074/mcp.M115.054585]; GPMDB: [http://gpmdb.org/data/keyword/26644413 66]. | ||
#Xu J, Gao J, Yu C, He H, Yang Y, Figeys D, Zhou H, (2016) "Development of Online pH Gradient-Eluted Strong Cation Exchange Nanoelectrospray-Tandem Mass Spectrometry for Proteomic Analysis Facilitating Basic and Histidine-Containing Peptides Identification." <i>Anal Chem</i> <b>88</b>(1):583–91; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26646553 26646553]; doi: [https://dx.doi.org/10.1021/acs.analchem.5b04000 10.1021/acs.analchem.5b04000]; GPMDB: [http://gpmdb.org/data/keyword/26646553 6]. | #Xu J, Gao J, Yu C, He H, Yang Y, Figeys D, Zhou H, (2016) "Development of Online pH Gradient-Eluted Strong Cation Exchange Nanoelectrospray-Tandem Mass Spectrometry for Proteomic Analysis Facilitating Basic and Histidine-Containing Peptides Identification." <i>Anal Chem</i> <b>88</b>(1):583–91; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26646553 26646553]; doi: [https://dx.doi.org/10.1021/acs.analchem.5b04000 10.1021/acs.analchem.5b04000]; GPMDB: [http://gpmdb.org/data/keyword/26646553 6]. | ||
+ | #Iglesias-Gato D, Wikström P, Tyanova S, Lavallee C, Thysell E, Carlsson J, Hägglöf C, Cox J, Andrén O, Stattin P, Egevad L, Widmark A, Bjartell A, Collins CC, Bergh A, Geiger T, Mann M, Flores-Morales A, (2015) "The Proteome of Primary Prostate Cancer." <i>Eur Urol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26651926 26651926]; doi: [https://dx.doi.org/10.1016/j.eururo.2015.10.053 10.1016/j.eururo.2015.10.053]; GPMDB: [http://gpmdb.org/data/keyword/26651926 2]. | ||
#Kasvandik S, Samuel K, Peters M, Eimre M, Peet N, Roost AM, Padrik L, Paju K, Peil L, Salumets A, (2016) "Deep Quantitative Proteomics Reveals Extensive Metabolic Reprogramming and Cancer-Like Changes of Ectopic Endometriotic Stromal Cells." <i>J Proteome Res</i> <b>15</b>(2):572–84; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26654049 26654049]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00965 10.1021/acs.jproteome.5b00965]; GPMDB: [http://gpmdb.org/data/keyword/26654049 21]. | #Kasvandik S, Samuel K, Peters M, Eimre M, Peet N, Roost AM, Padrik L, Paju K, Peil L, Salumets A, (2016) "Deep Quantitative Proteomics Reveals Extensive Metabolic Reprogramming and Cancer-Like Changes of Ectopic Endometriotic Stromal Cells." <i>J Proteome Res</i> <b>15</b>(2):572–84; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26654049 26654049]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00965 10.1021/acs.jproteome.5b00965]; GPMDB: [http://gpmdb.org/data/keyword/26654049 21]. | ||
#Farina F, Gaillard J, Guérin C, Couté Y, Sillibourne J, Blanchoin L, Théry M, (2016) "The centrosome is an actin-organizing centre." <i>Nat Cell Biol</i> <b>18</b>(1):65–75; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26655833 26655833]; doi: [https://dx.doi.org/10.1038/ncb3285 10.1038/ncb3285]; GPMDB: [http://gpmdb.org/data/keyword/26655833 2]. | #Farina F, Gaillard J, Guérin C, Couté Y, Sillibourne J, Blanchoin L, Théry M, (2016) "The centrosome is an actin-organizing centre." <i>Nat Cell Biol</i> <b>18</b>(1):65–75; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26655833 26655833]; doi: [https://dx.doi.org/10.1038/ncb3285 10.1038/ncb3285]; GPMDB: [http://gpmdb.org/data/keyword/26655833 2]. | ||
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#Liñeiro E, Chiva C, Cantoral JM, Sabido E, Fernández-Acero FJ, (2016) "Phosphoproteome analysis of B. cinerea in response to different plant-based elicitors." <i>J Proteomics</i> <b>139</b>:84–94; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27003611 27003611]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.03.019 10.1016/j.jprot.2016.03.019]; GPMDB: [http://gpmdb.org/data/keyword/27003611 8]. | #Liñeiro E, Chiva C, Cantoral JM, Sabido E, Fernández-Acero FJ, (2016) "Phosphoproteome analysis of B. cinerea in response to different plant-based elicitors." <i>J Proteomics</i> <b>139</b>:84–94; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27003611 27003611]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.03.019 10.1016/j.jprot.2016.03.019]; GPMDB: [http://gpmdb.org/data/keyword/27003611 8]. | ||
#Wilkerson EM, Johansson MW, Hebert AS, Westphall MS, Mathur SK, Jarjour NN, Schwantes EA, Mosher DF, Coon JJ, (2016) "The Peripheral Blood Eosinophil Proteome." <i>J Proteome Res</i> <b>15</b>(5):1524–33; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27005946 27005946]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00006 10.1021/acs.jproteome.6b00006]; GPMDB: [http://gpmdb.org/data/keyword/27005946 45]. | #Wilkerson EM, Johansson MW, Hebert AS, Westphall MS, Mathur SK, Jarjour NN, Schwantes EA, Mosher DF, Coon JJ, (2016) "The Peripheral Blood Eosinophil Proteome." <i>J Proteome Res</i> <b>15</b>(5):1524–33; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27005946 27005946]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00006 10.1021/acs.jproteome.6b00006]; GPMDB: [http://gpmdb.org/data/keyword/27005946 45]. | ||
- | #Wilson MC, Trakarnsanga K, Heesom KJ, Cogan N, Green C, Toye AM, Parsons SF, | + | #Wilson MC, Trakarnsanga K, Heesom KJ, Cogan N, Green C, Toye AM, Parsons SF, Anstee DJ, Frayne J, (2016) "Comparison of the Proteome of Adult and Cord Erythroid Cells, and Changes in the Proteome Following Reticulocyte Maturation." <i>Mol Cell Proteomics</i> <b>15</b>(6):1938–46; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27006477 27006477]; doi: [https://dx.doi.org/10.1074/mcp.M115.057315 10.1074/mcp.M115.057315]; GPMDB: [http://gpmdb.org/data/keyword/27006477 2]. |
#Sunitha B, Gayathri N, Kumar M, Keshava Prasad TS, Nalini A, Padmanabhan B, Srinivas Bharath MM, (2016) "Muscle biopsies from human muscle diseases with myopathic pathology reveal common alterations in mitochondrial function." <i>J Neurochem</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27015874 27015874]; doi: [https://dx.doi.org/10.1111/jnc.13626 10.1111/jnc.13626]; GPMDB: [http://gpmdb.org/data/keyword/27015874 1]. | #Sunitha B, Gayathri N, Kumar M, Keshava Prasad TS, Nalini A, Padmanabhan B, Srinivas Bharath MM, (2016) "Muscle biopsies from human muscle diseases with myopathic pathology reveal common alterations in mitochondrial function." <i>J Neurochem</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27015874 27015874]; doi: [https://dx.doi.org/10.1111/jnc.13626 10.1111/jnc.13626]; GPMDB: [http://gpmdb.org/data/keyword/27015874 1]. | ||
#Huang D, Piening BD, Kennedy JJ, Lin C, Jones-Weinert CW, Yan P, Paulovich AG, (2016) "DNA Replication Stress Phosphoproteome Profiles Reveal Novel Functional Phosphorylation Sites on Xrs2 in Saccharomyces cerevisiae." <i>Genetics</i> <b>203</b>(1):353–68; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27017623 27017623]; doi: [https://dx.doi.org/10.1534/genetics.115.185231 10.1534/genetics.115.185231]; GPMDB: [http://gpmdb.org/data/keyword/27017623 4]. | #Huang D, Piening BD, Kennedy JJ, Lin C, Jones-Weinert CW, Yan P, Paulovich AG, (2016) "DNA Replication Stress Phosphoproteome Profiles Reveal Novel Functional Phosphorylation Sites on Xrs2 in Saccharomyces cerevisiae." <i>Genetics</i> <b>203</b>(1):353–68; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27017623 27017623]; doi: [https://dx.doi.org/10.1534/genetics.115.185231 10.1534/genetics.115.185231]; GPMDB: [http://gpmdb.org/data/keyword/27017623 4]. | ||
#Lawrence RT, Searle BC, Llovet A, Villén J, (2016) "Plug-and-play analysis of the human phosphoproteome by targeted high-resolution mass spectrometry." <i>Nat Methods</i> <b>13</b>(5):431–4; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27018578 27018578]; doi: [https://dx.doi.org/10.1038/nmeth.3811 10.1038/nmeth.3811]; GPMDB: [http://gpmdb.org/data/keyword/27018578 6]. | #Lawrence RT, Searle BC, Llovet A, Villén J, (2016) "Plug-and-play analysis of the human phosphoproteome by targeted high-resolution mass spectrometry." <i>Nat Methods</i> <b>13</b>(5):431–4; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27018578 27018578]; doi: [https://dx.doi.org/10.1038/nmeth.3811 10.1038/nmeth.3811]; GPMDB: [http://gpmdb.org/data/keyword/27018578 6]. | ||
- | #Slany A, Bileck A, Kreutz D, Mayer RL, Muqaku B, Gerner C, (2016) "Contribution of | + | #Slany A, Bileck A, Kreutz D, Mayer RL, Muqaku B, Gerner C, (2016) "Contribution of Human Fibroblasts and Endothelial Cells to the Hallmarks of Inflammation as Determined by Proteome Profiling." <i>Mol Cell Proteomics</i> <b>15</b>(6):1982–97; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27025457 27025457]; doi: [https://dx.doi.org/10.1074/mcp.M116.058099 10.1074/mcp.M116.058099]; GPMDB: [http://gpmdb.org/data/keyword/27025457 104]. |
#Osinalde N, Sánchez-Quiles V, Blagoev B, Kratchmarova I, (2016) "Changes in Gab2 phosphorylation and interaction partners in response to interleukin (IL)-2 stimulation in T-lymphocytes." <i>Sci Rep</i> <b>6</b>:23530; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27025927 27025927]; doi: [https://dx.doi.org/10.1038/srep23530 10.1038/srep23530]; GPMDB: [http://gpmdb.org/data/keyword/27025927 22]. | #Osinalde N, Sánchez-Quiles V, Blagoev B, Kratchmarova I, (2016) "Changes in Gab2 phosphorylation and interaction partners in response to interleukin (IL)-2 stimulation in T-lymphocytes." <i>Sci Rep</i> <b>6</b>:23530; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27025927 27025927]; doi: [https://dx.doi.org/10.1038/srep23530 10.1038/srep23530]; GPMDB: [http://gpmdb.org/data/keyword/27025927 22]. | ||
#Xu G, Pattamatta A, Hildago R, Pace MC, Brown H, Borchelt DR, (2016) "Vulnerability of newly synthesized proteins to proteostasis stress." <i>J Cell Sci</i> <b>129</b>(9):1892–901; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27026526 27026526]; doi: [https://dx.doi.org/10.1242/jcs.176479 10.1242/jcs.176479]; GPMDB: [http://gpmdb.org/data/keyword/27026526 55]. | #Xu G, Pattamatta A, Hildago R, Pace MC, Brown H, Borchelt DR, (2016) "Vulnerability of newly synthesized proteins to proteostasis stress." <i>J Cell Sci</i> <b>129</b>(9):1892–901; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27026526 27026526]; doi: [https://dx.doi.org/10.1242/jcs.176479 10.1242/jcs.176479]; GPMDB: [http://gpmdb.org/data/keyword/27026526 55]. | ||
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#Salvetti A, Couté Y, Epstein A, Arata L, Kraut A, Navratil V, Bouvet P, Greco A, (2016) "Nuclear Functions of Nucleolin through Global Proteomics and Interactomic Approaches." <i>J Proteome Res</i> <b>15</b>(5):1659–69; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27049334 27049334]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00126 10.1021/acs.jproteome.6b00126]; GPMDB: [http://gpmdb.org/data/keyword/27049334 7]. | #Salvetti A, Couté Y, Epstein A, Arata L, Kraut A, Navratil V, Bouvet P, Greco A, (2016) "Nuclear Functions of Nucleolin through Global Proteomics and Interactomic Approaches." <i>J Proteome Res</i> <b>15</b>(5):1659–69; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27049334 27049334]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00126 10.1021/acs.jproteome.6b00126]; GPMDB: [http://gpmdb.org/data/keyword/27049334 7]. | ||
#Zhou S, Okekeogbu I, Sangireddy S, Ye Z, Li H, Bhatti S, Hui D, McDonald DW, Yang Y, Giri S, Howe KJ, Fish T, Thannhauser TW, (2016) "Proteome Modification in Tomato Plants upon Long-Term Aluminum Treatment." <i>J Proteome Res</i> <b>15</b>(5):1670–84; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27052409 27052409]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00128 10.1021/acs.jproteome.6b00128]; GPMDB: [http://gpmdb.org/data/keyword/27052409 68]. | #Zhou S, Okekeogbu I, Sangireddy S, Ye Z, Li H, Bhatti S, Hui D, McDonald DW, Yang Y, Giri S, Howe KJ, Fish T, Thannhauser TW, (2016) "Proteome Modification in Tomato Plants upon Long-Term Aluminum Treatment." <i>J Proteome Res</i> <b>15</b>(5):1670–84; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27052409 27052409]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00128 10.1021/acs.jproteome.6b00128]; GPMDB: [http://gpmdb.org/data/keyword/27052409 68]. | ||
- | #Slomnicki | + | #Slomnicki LP, Malinowska A, Kistowski M, Palusinski A, Zheng JJ, Sepp M, Timmusk T, Dadlez M, Hetman M, (2016) "Nucleolar Enrichment of Brain Proteins with Critical Roles in Human Neurodevelopment." <i>Mol Cell Proteomics</i> <b>15</b>(6):2055–75; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27053602 27053602]; doi: [https://dx.doi.org/10.1074/mcp.M115.051920 10.1074/mcp.M115.051920]; GPMDB: [http://gpmdb.org/data/keyword/27053602 18]. |
- | #Liberton M, Saha R, Jacobs JM, Nguyen AY, Gritsenko MA, Smith RD, Koppenaal DW, Pakrasi HB, (2016) "Global Proteomic Analysis Reveals an Exclusive Role of Thylakoid Membranes in Bioenergetics of a Model Cyanobacterium." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27056914 27056914]; doi: [https://dx.doi.org/10.1074/mcp.M115.057240 10.1074/mcp.M115.057240]; GPMDB: [http://gpmdb.org/data/keyword/27056914 2]. | + | #Liberton M, Saha R, Jacobs JM, Nguyen AY, Gritsenko MA, Smith RD, Koppenaal DW, Pakrasi HB, (2016) "Global Proteomic Analysis Reveals an Exclusive Role of Thylakoid Membranes in Bioenergetics of a Model Cyanobacterium." <i>Mol Cell Proteomics</i> <b>15</b>(6):2021–32; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27056914 27056914]; doi: [https://dx.doi.org/10.1074/mcp.M115.057240 10.1074/mcp.M115.057240]; GPMDB: [http://gpmdb.org/data/keyword/27056914 2]. |
#Kähne T, Richter S, Kolodziej A, Smalla KH, Pielot R, Engler A, Ohl FW, Dieterich DC, Seidenbecher C, Tischmeyer W, Naumann M, Gundelfinger ED, (2016) "Proteome rearrangements after auditory learning: high-resolution profiling of synapse-enriched protein fractions from mouse brain." <i>J Neurochem</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27062398 27062398]; doi: [https://dx.doi.org/10.1111/jnc.13636 10.1111/jnc.13636]; GPMDB: [http://gpmdb.org/data/keyword/27062398 15]. | #Kähne T, Richter S, Kolodziej A, Smalla KH, Pielot R, Engler A, Ohl FW, Dieterich DC, Seidenbecher C, Tischmeyer W, Naumann M, Gundelfinger ED, (2016) "Proteome rearrangements after auditory learning: high-resolution profiling of synapse-enriched protein fractions from mouse brain." <i>J Neurochem</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27062398 27062398]; doi: [https://dx.doi.org/10.1111/jnc.13636 10.1111/jnc.13636]; GPMDB: [http://gpmdb.org/data/keyword/27062398 15]. | ||
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- | #Drabovich AP, Pavlou MP, Schiza C, Diamandis EP, (2016) "Dynamics of | + | #Drabovich AP, Pavlou MP, Schiza C, Diamandis EP, (2016) "Dynamics of Protein Expression Reveals Primary Targets and Secondary Messengers of Estrogen Receptor Alpha Signaling in MCF-7 Breast Cancer Cells." <i>Mol Cell Proteomics</i> <b>15</b>(6):2093–107; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27067054 27067054]; doi: [https://dx.doi.org/10.1074/mcp.M115.057257 10.1074/mcp.M115.057257]; GPMDB: [http://gpmdb.org/data/keyword/27067054 12]. |
- | #Osinalde N, Mitxelena J, | + | #Osinalde N, Mitxelena J, Sánchez-Quiles V, Akimov V, Aloria K, Arizmendi JM, Zubiaga AM, Blagoev B, Kratchmarova I, (2016) "Nuclear Phosphoproteomic Screen Uncovers ACLY as Mediator of IL-2-induced Proliferation of CD4+ T lymphocytes." <i>Mol Cell Proteomics</i> <b>15</b>(6):2076–92; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27067055 27067055]; doi: [https://dx.doi.org/10.1074/mcp.M115.057158 10.1074/mcp.M115.057158]; GPMDB: [http://gpmdb.org/data/keyword/27067055 19]. |
#Xu B, Tian R, Wang X, Zhan S, Wang R, Guo Y, Ge W, (2016) "Protein profile changes in the frontotemporal lobes in human severe traumatic brain injury." <i>Brain Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27067185 27067185]; doi: [https://dx.doi.org/10.1016/j.brainres.2016.04.008 10.1016/j.brainres.2016.04.008]; GPMDB: [http://gpmdb.org/data/keyword/27067185 20]. | #Xu B, Tian R, Wang X, Zhan S, Wang R, Guo Y, Ge W, (2016) "Protein profile changes in the frontotemporal lobes in human severe traumatic brain injury." <i>Brain Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27067185 27067185]; doi: [https://dx.doi.org/10.1016/j.brainres.2016.04.008 10.1016/j.brainres.2016.04.008]; GPMDB: [http://gpmdb.org/data/keyword/27067185 20]. | ||
#Rider MA, Hurwitz SN, Meckes DG Jr, (2016) "ExtraPEG: A Polyethylene Glycol-Based Method for Enrichment of Extracellular Vesicles." <i>Sci Rep</i> <b>6</b>:23978; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27068479 27068479]; doi: [https://dx.doi.org/10.1038/srep23978 10.1038/srep23978]; GPMDB: [http://gpmdb.org/data/keyword/27068479 3]. | #Rider MA, Hurwitz SN, Meckes DG Jr, (2016) "ExtraPEG: A Polyethylene Glycol-Based Method for Enrichment of Extracellular Vesicles." <i>Sci Rep</i> <b>6</b>:23978; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27068479 27068479]; doi: [https://dx.doi.org/10.1038/srep23978 10.1038/srep23978]; GPMDB: [http://gpmdb.org/data/keyword/27068479 3]. | ||
#Barallobre-Barreiro J, Oklu R, Lynch M, Fava M, Baig F, Yin X, Barwari T, Potier DN, Albadawi H, Jahangiri M, Porter KE, Watkins MT, Misra S, Stoughton J, Mayr M, (2016) "Extracellular matrix remodelling in response to venous hypertension: proteomics of human varicose veins." <i>Cardiovasc Res</i> <b>110</b>(3):419–30; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27068509 27068509]; doi: [https://dx.doi.org/10.1093/cvr/cvw075 10.1093/cvr/cvw075]; GPMDB: [http://gpmdb.org/data/keyword/27068509 12]. | #Barallobre-Barreiro J, Oklu R, Lynch M, Fava M, Baig F, Yin X, Barwari T, Potier DN, Albadawi H, Jahangiri M, Porter KE, Watkins MT, Misra S, Stoughton J, Mayr M, (2016) "Extracellular matrix remodelling in response to venous hypertension: proteomics of human varicose veins." <i>Cardiovasc Res</i> <b>110</b>(3):419–30; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27068509 27068509]; doi: [https://dx.doi.org/10.1093/cvr/cvw075 10.1093/cvr/cvw075]; GPMDB: [http://gpmdb.org/data/keyword/27068509 12]. | ||
- | #Sarhan AR, Patel TR, Creese AJ, Tomlinson MG, Hellberg C, Heath JK, Hotchin NA, Cunningham DL, (2016) "Regulation of | + | #Sarhan AR, Patel TR, Creese AJ, Tomlinson MG, Hellberg C, Heath JK, Hotchin NA, Cunningham DL, (2016) "Regulation of Platelet Derived Growth Factor Signaling by Leukocyte Common Antigen-related (LAR) Protein Tyrosine Phosphatase: A Quantitative Phosphoproteomics Study." <i>Mol Cell Proteomics</i> <b>15</b>(6):1823–36; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27074791 27074791]; doi: [https://dx.doi.org/10.1074/mcp.M115.053652 10.1074/mcp.M115.053652]; GPMDB: [http://gpmdb.org/data/keyword/27074791 17]. |
#Lochmatter C, Fischer R, Charles PD, Yu Z, Powrie F, Kessler BM, (2016) "Integrative Phosphoproteomics Links IL-23R Signaling with Metabolic Adaptation in Lymphocytes." <i>Sci Rep</i> <b>6</b>:24491; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27080861 27080861]; doi: [https://dx.doi.org/10.1038/srep24491 10.1038/srep24491]; GPMDB: [http://gpmdb.org/data/keyword/27080861 7]. | #Lochmatter C, Fischer R, Charles PD, Yu Z, Powrie F, Kessler BM, (2016) "Integrative Phosphoproteomics Links IL-23R Signaling with Metabolic Adaptation in Lymphocytes." <i>Sci Rep</i> <b>6</b>:24491; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27080861 27080861]; doi: [https://dx.doi.org/10.1038/srep24491 10.1038/srep24491]; GPMDB: [http://gpmdb.org/data/keyword/27080861 7]. | ||
- | #Arts IS, Vertommen D, Baldin F, Laloux G, Collet JF, (2016) "Comprehensively | + | #Arts IS, Vertommen D, Baldin F, Laloux G, Collet JF, (2016) "Comprehensively Characterizing the Thioredoxin Interactome In Vivo Highlights the Central Role Played by This Ubiquitous Oxidoreductase in Redox Control." <i>Mol Cell Proteomics</i> <b>15</b>(6):2125–40; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27081212 27081212]; doi: [https://dx.doi.org/10.1074/mcp.M115.056440 10.1074/mcp.M115.056440]; GPMDB: [http://gpmdb.org/data/keyword/27081212 103]. |
#Tape CJ, Ling S, Dimitriadi M, McMahon KM, Worboys JD, Leong HS, Norrie IC, Miller CJ, Poulogiannis G, Lauffenburger DA, Jørgensen C, (2016) "Oncogenic KRAS Regulates Tumor Cell Signaling via Stromal Reciprocation." <i>Cell</i> <b>165</b>(4):910–20; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27087446 27087446]; doi: [https://dx.doi.org/10.1016/j.cell.2016.03.029 10.1016/j.cell.2016.03.029]; GPMDB: [http://gpmdb.org/data/keyword/27087446 374]. | #Tape CJ, Ling S, Dimitriadi M, McMahon KM, Worboys JD, Leong HS, Norrie IC, Miller CJ, Poulogiannis G, Lauffenburger DA, Jørgensen C, (2016) "Oncogenic KRAS Regulates Tumor Cell Signaling via Stromal Reciprocation." <i>Cell</i> <b>165</b>(4):910–20; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27087446 27087446]; doi: [https://dx.doi.org/10.1016/j.cell.2016.03.029 10.1016/j.cell.2016.03.029]; GPMDB: [http://gpmdb.org/data/keyword/27087446 374]. | ||
#Stoehr A, Yang Y, Patel S, Evangelista AM, Aponte A, Wang G, Liu P, Boylston J, Kloner PH, Lin Y, Gucek M, Zhu J, Murphy E, (2016) "Prolyl hydroxylation regulates protein degradation, synthesis, and splicing in human induced pluripotent stem cell-derived cardiomyocytes." <i>Cardiovasc Res</i> <b>110</b>(3):346–58; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27095734 27095734]; doi: [https://dx.doi.org/10.1093/cvr/cvw081 10.1093/cvr/cvw081]; GPMDB: [http://gpmdb.org/data/keyword/27095734 12]. | #Stoehr A, Yang Y, Patel S, Evangelista AM, Aponte A, Wang G, Liu P, Boylston J, Kloner PH, Lin Y, Gucek M, Zhu J, Murphy E, (2016) "Prolyl hydroxylation regulates protein degradation, synthesis, and splicing in human induced pluripotent stem cell-derived cardiomyocytes." <i>Cardiovasc Res</i> <b>110</b>(3):346–58; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27095734 27095734]; doi: [https://dx.doi.org/10.1093/cvr/cvw081 10.1093/cvr/cvw081]; GPMDB: [http://gpmdb.org/data/keyword/27095734 12]. | ||
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#Petrone A, Adamo ME, Cheg C, Kettenbach AN, (2016) "Identification of candidate CDK1 substrates in mitosis by quantitative phosphoproteomics." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27134283 27134283]; doi: [https://dx.doi.org/10.1074/mcp.M116.059394 10.1074/mcp.M116.059394]; GPMDB: [http://gpmdb.org/data/keyword/27134283 90]. | #Petrone A, Adamo ME, Cheg C, Kettenbach AN, (2016) "Identification of candidate CDK1 substrates in mitosis by quantitative phosphoproteomics." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27134283 27134283]; doi: [https://dx.doi.org/10.1074/mcp.M116.059394 10.1074/mcp.M116.059394]; GPMDB: [http://gpmdb.org/data/keyword/27134283 90]. | ||
#Ori A, Toyama BH, Harris MS, Bock T, Iskar M, Bork P, Ingolia NT, Hetzer MW, Beck M, (2015) "Integrated Transcriptome and Proteome Analyses Reveal Organ-Specific Proteome Deterioration in Old Rats." <i>Cell Syst</i> <b>1</b>(3):224–37; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27135913 27135913]; doi: [https://dx.doi.org/10.1016/j.cels.2015.08.012 10.1016/j.cels.2015.08.012]; GPMDB: [http://gpmdb.org/data/keyword/27135913 190]. | #Ori A, Toyama BH, Harris MS, Bock T, Iskar M, Bork P, Ingolia NT, Hetzer MW, Beck M, (2015) "Integrated Transcriptome and Proteome Analyses Reveal Organ-Specific Proteome Deterioration in Old Rats." <i>Cell Syst</i> <b>1</b>(3):224–37; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27135913 27135913]; doi: [https://dx.doi.org/10.1016/j.cels.2015.08.012 10.1016/j.cels.2015.08.012]; GPMDB: [http://gpmdb.org/data/keyword/27135913 190]. | ||
- | #Ulrich V, Rotllan N, Araldi E, Luciano A, Skroblin P, Abonnenc M, Perrotta P, Yin X, Bauer A, Leslie KL, Zhang P, Aryal B, Montgomery RL, Thum T, Martin K, Suarez Y, Mayr M, Fernandez-Hernando C, Sessa WC, (2016) "Chronic miR-29 antagonism promotes favorable plaque remodeling in atherosclerotic mice." <i>EMBO Mol Med</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27137489 27137489]; doi: [https://dx.doi.org/10.15252/emmm.201506031 10.15252/emmm.201506031]; GPMDB: [http://gpmdb.org/data/keyword/27137489 120]. | + | #Ulrich V, Rotllan N, Araldi E, Luciano A, Skroblin P, Abonnenc M, Perrotta P, Yin X, Bauer A, Leslie KL, Zhang P, Aryal B, Montgomery RL, Thum T, Martin K, Suarez Y, Mayr M, Fernandez-Hernando C, Sessa WC, (2016) "Chronic miR-29 antagonism promotes favorable plaque remodeling in atherosclerotic mice." <i>EMBO Mol Med</i> <b>8</b>(6):643–53; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27137489 27137489]; doi: [https://dx.doi.org/10.15252/emmm.201506031 10.15252/emmm.201506031]; GPMDB: [http://gpmdb.org/data/keyword/27137489 120]. |
#Zielke RA, Wierzbicki IH, Baarda BI, Gafken PR, Soge OO, Holmes KK, Jerse AE, Unemo M, Sikora AE, (2016) "Proteomics-driven antigen discovery for development of vaccines against gonorrhea." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27141096 27141096]; doi: [https://dx.doi.org/10.1074/mcp.M116.058800 10.1074/mcp.M116.058800]; GPMDB: [http://gpmdb.org/data/keyword/27141096 3]. | #Zielke RA, Wierzbicki IH, Baarda BI, Gafken PR, Soge OO, Holmes KK, Jerse AE, Unemo M, Sikora AE, (2016) "Proteomics-driven antigen discovery for development of vaccines against gonorrhea." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27141096 27141096]; doi: [https://dx.doi.org/10.1074/mcp.M116.058800 10.1074/mcp.M116.058800]; GPMDB: [http://gpmdb.org/data/keyword/27141096 3]. | ||
+ | #Masuishi Y, Kimura Y, Arakawa N, Hirano H, (2016) "Data for identification of GPI-anchored peptides and ω-sites in cancer cell lines." <i>Data Brief</i> <b>7</b>:1302–5; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27141528 27141528]; doi: [https://dx.doi.org/10.1016/j.dib.2016.04.001 10.1016/j.dib.2016.04.001]; GPMDB: [http://gpmdb.org/data/keyword/27141528 42]. | ||
#Ziganshin RH, Ivanova OM, Lomakin YA, Belogurov AA Jr, Kovalchuk SI, Azarkin IV, Arapidi GP, Anikanov NA, Shender VO, Piradov MA, Suponeva NA, Vorobyeva AA, Gabibov AG, Ivanov VT, Govorun VM, (2016) "The pathogenesis of demyelinating form of Guillain-Barre syndrome: proteo-peptidomic and immunological profiling of physiological fluids." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27143409 27143409]; doi: [https://dx.doi.org/10.1074/mcp.M115.056036 10.1074/mcp.M115.056036]; GPMDB: [http://gpmdb.org/data/keyword/27143409 28]. | #Ziganshin RH, Ivanova OM, Lomakin YA, Belogurov AA Jr, Kovalchuk SI, Azarkin IV, Arapidi GP, Anikanov NA, Shender VO, Piradov MA, Suponeva NA, Vorobyeva AA, Gabibov AG, Ivanov VT, Govorun VM, (2016) "The pathogenesis of demyelinating form of Guillain-Barre syndrome: proteo-peptidomic and immunological profiling of physiological fluids." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27143409 27143409]; doi: [https://dx.doi.org/10.1074/mcp.M115.056036 10.1074/mcp.M115.056036]; GPMDB: [http://gpmdb.org/data/keyword/27143409 28]. | ||
#Kempf SJ, Metaxas A, Ibáñez-Vea M, Darvesh S, Finsen B, Larsen MR, (2016) "An integrated proteomics approach shows synaptic plasticity changes in an APP/PS1 Alzheimer's mouse model." <i>Oncotarget</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27144524 27144524]; doi: [https://dx.doi.org/10.18632/oncotarget.9092 10.18632/oncotarget.9092]; GPMDB: [http://gpmdb.org/data/keyword/27144524 104]. | #Kempf SJ, Metaxas A, Ibáñez-Vea M, Darvesh S, Finsen B, Larsen MR, (2016) "An integrated proteomics approach shows synaptic plasticity changes in an APP/PS1 Alzheimer's mouse model." <i>Oncotarget</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27144524 27144524]; doi: [https://dx.doi.org/10.18632/oncotarget.9092 10.18632/oncotarget.9092]; GPMDB: [http://gpmdb.org/data/keyword/27144524 104]. | ||
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#Tuveng TR, Arntzen MØ, Bengtsson O, Gardner JG, Vaaje-Kolstad G, Eijsink VG, (2016) "Proteomic investigation of the secretome of cellvibrio japonicus during growth on chitin." <i>Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27169553 27169553]; doi: [https://dx.doi.org/10.1002/pmic.201500419 10.1002/pmic.201500419]; GPMDB: [http://gpmdb.org/data/keyword/27169553 18]. | #Tuveng TR, Arntzen MØ, Bengtsson O, Gardner JG, Vaaje-Kolstad G, Eijsink VG, (2016) "Proteomic investigation of the secretome of cellvibrio japonicus during growth on chitin." <i>Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27169553 27169553]; doi: [https://dx.doi.org/10.1002/pmic.201500419 10.1002/pmic.201500419]; GPMDB: [http://gpmdb.org/data/keyword/27169553 18]. | ||
#Rao SR, Flores-Rodriguez N, Page SL, Wong C, Robinson PJ, Chircop M, (2016) "The clathrin-dependent spindle proteome." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27174698 27174698]; doi: [https://dx.doi.org/10.1074/mcp.M115.054809 10.1074/mcp.M115.054809]; GPMDB: [http://gpmdb.org/data/keyword/27174698 130]. | #Rao SR, Flores-Rodriguez N, Page SL, Wong C, Robinson PJ, Chircop M, (2016) "The clathrin-dependent spindle proteome." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27174698 27174698]; doi: [https://dx.doi.org/10.1074/mcp.M115.054809 10.1074/mcp.M115.054809]; GPMDB: [http://gpmdb.org/data/keyword/27174698 130]. | ||
+ | #Gupta I, Villanyi Z, Kassem S, Hughes C, Panasenko OO, Steinmetz LM, Collart MA, (2016) "Translational Capacity of a Cell Is Determined during Transcription Elongation via the Ccr4-Not Complex." <i>Cell Rep</i> <b>15</b>(8):1782–94; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27184853 27184853]; doi: [https://dx.doi.org/10.1016/j.celrep.2016.04.055 10.1016/j.celrep.2016.04.055]; GPMDB: [http://gpmdb.org/data/keyword/27184853 4]. | ||
#Kliuchnikova AA, Samokhina NI, Ilina IY, Karpov DS, Pyatnitskiy MA, Kuznetsova KG, Toropygin IY, Kochergin SA, Alekseev IB, Zgoda VG, Archakov AI, Moshkovskii SA, (2016) "Human aqueous humor proteome in cataract, glaucoma and pseudoexfoliation syndrome." <i>Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27193151 27193151]; doi: [https://dx.doi.org/10.1002/pmic.201500423 10.1002/pmic.201500423]; GPMDB: [http://gpmdb.org/data/keyword/27193151 86]. | #Kliuchnikova AA, Samokhina NI, Ilina IY, Karpov DS, Pyatnitskiy MA, Kuznetsova KG, Toropygin IY, Kochergin SA, Alekseev IB, Zgoda VG, Archakov AI, Moshkovskii SA, (2016) "Human aqueous humor proteome in cataract, glaucoma and pseudoexfoliation syndrome." <i>Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27193151 27193151]; doi: [https://dx.doi.org/10.1002/pmic.201500423 10.1002/pmic.201500423]; GPMDB: [http://gpmdb.org/data/keyword/27193151 86]. | ||
- | #Heaven MR, Flint D, Randall SM, Sosunov AA, Wilson | + | #Heaven MR, Flint D, Randall SM, Sosunov AA, Wilson L, Barnes S, Goldman JE, Muddiman DC, Brenner M, (2016) "Composition of Rosenthal Fibers, the Protein Aggregate Hallmark of Alexander Disease." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27193225 27193225]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00316 10.1021/acs.jproteome.6b00316]; GPMDB: [http://gpmdb.org/data/keyword/27193225 8]. |
#Yang W, Jackson B, Zhang H, (2016) "Identification of glycoproteins associated with HIV latently infected cells using quantitative glycoproteomics." <i>Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27195445 27195445]; doi: [https://dx.doi.org/10.1002/pmic.201500215 10.1002/pmic.201500215]; GPMDB: [http://gpmdb.org/data/keyword/27195445 12]. | #Yang W, Jackson B, Zhang H, (2016) "Identification of glycoproteins associated with HIV latently infected cells using quantitative glycoproteomics." <i>Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27195445 27195445]; doi: [https://dx.doi.org/10.1002/pmic.201500215 10.1002/pmic.201500215]; GPMDB: [http://gpmdb.org/data/keyword/27195445 12]. | ||
#Liang W, Ward LJ, Karlsson H, Ljunggren SA, Li W, Lindahl M, Yuan XM, (2016) "Distinctive proteomic profiles among different regions of human carotid plaques in men and women." <i>Sci Rep</i> <b>6</b>:26231; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27198765 27198765]; doi: [https://dx.doi.org/10.1038/srep26231 10.1038/srep26231]; GPMDB: [http://gpmdb.org/data/keyword/27198765 60]. | #Liang W, Ward LJ, Karlsson H, Ljunggren SA, Li W, Lindahl M, Yuan XM, (2016) "Distinctive proteomic profiles among different regions of human carotid plaques in men and women." <i>Sci Rep</i> <b>6</b>:26231; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27198765 27198765]; doi: [https://dx.doi.org/10.1038/srep26231 10.1038/srep26231]; GPMDB: [http://gpmdb.org/data/keyword/27198765 60]. | ||
#Virant-Klun I, Leicht S, Hughes C, Krijgsveld J, (2016) "Identification of maturation-specific proteins by single-cell proteomics of human oocytes." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27215607 27215607]; doi: [https://dx.doi.org/10.1074/mcp.M115.056887 10.1074/mcp.M115.056887]; GPMDB: [http://gpmdb.org/data/keyword/27215607 18]. | #Virant-Klun I, Leicht S, Hughes C, Krijgsveld J, (2016) "Identification of maturation-specific proteins by single-cell proteomics of human oocytes." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27215607 27215607]; doi: [https://dx.doi.org/10.1074/mcp.M115.056887 10.1074/mcp.M115.056887]; GPMDB: [http://gpmdb.org/data/keyword/27215607 18]. | ||
+ | #Yu J, Storer BE, Kushekhar K, Abu Zaid M, Zhang Q, Gafken PR, Ogata Y, Martin PJ, Flowers ME, Hansen JA, Arora M, Cutler C, Jagasia M, Pidala J, Hamilton BK, Chen GL, Pusic I, Lee SJ, Paczesny S, (2016) "Biomarker Panel for Chronic Graft-Versus-Host Disease." <i>J Clin Oncol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27217465 27217465]; doi: [https://dx.doi.org/10.1200/JCO.2015.65.9615 10.1200/JCO.2015.65.9615]; GPMDB: [http://gpmdb.org/data/keyword/27217465 3]. | ||
+ | #Wang B, Pfeiffer MJ, Drexler HC, Fuellen G, Boiani M, (2016) "Proteomic analysis of mouse oocytes identifies PRMT7 as reprogramming factor that replaces SOX2 in the induction of pluripotent stem cells." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27225728 27225728]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b01083 10.1021/acs.jproteome.5b01083]; GPMDB: [http://gpmdb.org/data/keyword/27225728 6]. | ||
+ | #Lodrini M, Poschmann G, Schmidt V, Wünschel J, Dreidax D, Witt O, Höfer T, Meyer HE, Stuehler K, Eggert A, Deubzer HE, (2016) "The MCM complex is a critical node in the miR-183 signaling network of MYCN-amplified neuroblastoma cells." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27239679 27239679]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00134 10.1021/acs.jproteome.6b00134]; GPMDB: [http://gpmdb.org/data/keyword/27239679 12]. |
GPMDB was originally constructed to serve as a reference work for all publicly available proteomics generated using tandem mass spectrometry. Public data is downloaded and reanalyzed using the current version of X! Tandem. The result files generated by the reanalysis and the relevant metadata are imported into the database and made available through the associated web site, ftp site and REST interfaces.
Contents |
The following public data repositories are checked daily for new suitable raw data for reanalysis:
Data made available from specific large projects, such as CPTAC or the Human Proteome Atlas, are also included when they are made available. Every effort is made so that reanalyzed results from all data sources are made available within 48 hours of their being released. In addition, data from lab web sites, ftp sites and direct contributions through the GPM sites made available to researchers are imported into GPMDB as part of a daily incremental update process.
GPMDB has been in operation since Jan. 1, 2004. Several large data source repositories have come into existence and ceased activity in the period since that time. All of the data from those repositories (e.g., TRANCHE, Peptidome) were reanalyzed and stored in GPMDB and they are still available even though the source repository sites are no longer active.
Simply because data is made available does not mean that it will be included in GPMDB. The data must pass our internal automated quality control tests for its initial acceptance and it may be rejected subsequently because of either quality or originality concerns.
The following is a data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list was current, as of June 4, 2016.