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==Data from publications== | ==Data from publications== | ||
- | The following is a list of data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list (1,238 publications) was current, as of | + | The following is a list of data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list (1,238 publications) was current, as of September 4, 2016. |
#Speer CA, Whitmire WM, (1989) "Shedding of the immunodominant P20 surface antigen of Eimeria bovis sporozoites." <i>Infect Immun</i> <b>57</b>(3):999–1001; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/2645217 2645217]; GPMDB: [http://gpmdb.org/data/keyword/2645217 66]. | #Speer CA, Whitmire WM, (1989) "Shedding of the immunodominant P20 surface antigen of Eimeria bovis sporozoites." <i>Infect Immun</i> <b>57</b>(3):999–1001; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/2645217 2645217]; GPMDB: [http://gpmdb.org/data/keyword/2645217 66]. | ||
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#Rinschen MM, Yu MJ, Wang G, Boja ES, Hoffert JD, Pisitkun T, Knepper MA, (2010) "Quantitative phosphoproteomic analysis reveals vasopressin V2-receptor-dependent signaling pathways in renal collecting duct cells." <i>Proc Natl Acad Sci U S A</i> <b>107</b>(8):3882–7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20139300 20139300]; doi: [https://dx.doi.org/10.1073/pnas.0910646107 10.1073/pnas.0910646107]; GPMDB: [http://gpmdb.org/data/keyword/20139300 117]. | #Rinschen MM, Yu MJ, Wang G, Boja ES, Hoffert JD, Pisitkun T, Knepper MA, (2010) "Quantitative phosphoproteomic analysis reveals vasopressin V2-receptor-dependent signaling pathways in renal collecting duct cells." <i>Proc Natl Acad Sci U S A</i> <b>107</b>(8):3882–7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20139300 20139300]; doi: [https://dx.doi.org/10.1073/pnas.0910646107 10.1073/pnas.0910646107]; GPMDB: [http://gpmdb.org/data/keyword/20139300 117]. | ||
#Looso M, Borchardt T, Krüger M, Braun T, (2010) "Advanced identification of proteins in uncharacterized proteomes by pulsed in vivo stable isotope labeling-based mass spectrometry." <i>Mol Cell Proteomics</i> <b>9</b>(6):1157–66; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20139370 20139370]; doi: [https://dx.doi.org/10.1074/mcp.M900426-MCP200 10.1074/mcp.M900426-MCP200]; GPMDB: [http://gpmdb.org/data/keyword/20139370 23]. | #Looso M, Borchardt T, Krüger M, Braun T, (2010) "Advanced identification of proteins in uncharacterized proteomes by pulsed in vivo stable isotope labeling-based mass spectrometry." <i>Mol Cell Proteomics</i> <b>9</b>(6):1157–66; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20139370 20139370]; doi: [https://dx.doi.org/10.1074/mcp.M900426-MCP200 10.1074/mcp.M900426-MCP200]; GPMDB: [http://gpmdb.org/data/keyword/20139370 23]. | ||
- | # () "" <i></i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/ ]; GPMDB: [http://gpmdb.org/data/keyword/20158270 2]. | + | #Tomazella GG, daSilva I, Thomé CH, Greene LJ, Koehler CJ, Thiede B, Wiker HG, de Souza GA, (2010) "Analysis of detergent-insoluble and whole cell lysate fractions of resting neutrophils using high-resolution mass spectrometry." <i>J Proteome Res</i> <b>9</b>(4):2030–6; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20158270 20158270]; doi: [https://dx.doi.org/10.1021/pr1000253 10.1021/pr1000253]; GPMDB: [http://gpmdb.org/data/keyword/20158270 2]. |
#Sharma K, Kumar C, Kéri G, Breitkopf SB, Oppermann FS, Daub H, (2010) "Quantitative analysis of kinase-proximal signaling in lipopolysaccharide-induced innate immune response." <i>J Proteome Res</i> <b>9</b>(5):2539–49; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20222745 20222745]; doi: [https://dx.doi.org/10.1021/pr901192p 10.1021/pr901192p]; GPMDB: [http://gpmdb.org/data/keyword/20222745 73]. | #Sharma K, Kumar C, Kéri G, Breitkopf SB, Oppermann FS, Daub H, (2010) "Quantitative analysis of kinase-proximal signaling in lipopolysaccharide-induced innate immune response." <i>J Proteome Res</i> <b>9</b>(5):2539–49; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20222745 20222745]; doi: [https://dx.doi.org/10.1021/pr901192p 10.1021/pr901192p]; GPMDB: [http://gpmdb.org/data/keyword/20222745 73]. | ||
#Baiges I, Palmfeldt J, Bladé C, Gregersen N, Arola L, (2010) "Lipogenesis is decreased by grape seed proanthocyanidins according to liver proteomics of rats fed a high fat diet." <i>Mol Cell Proteomics</i> <b>9</b>(7):1499–513; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20332082 20332082]; doi: [https://dx.doi.org/10.1074/mcp.M000055-MCP201 10.1074/mcp.M000055-MCP201]; GPMDB: [http://gpmdb.org/data/keyword/20332082 2]. | #Baiges I, Palmfeldt J, Bladé C, Gregersen N, Arola L, (2010) "Lipogenesis is decreased by grape seed proanthocyanidins according to liver proteomics of rats fed a high fat diet." <i>Mol Cell Proteomics</i> <b>9</b>(7):1499–513; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20332082 20332082]; doi: [https://dx.doi.org/10.1074/mcp.M000055-MCP201 10.1074/mcp.M000055-MCP201]; GPMDB: [http://gpmdb.org/data/keyword/20332082 2]. | ||
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#Meding S, Martin K, Gustafsson OJ, Eddes JS, Hack S, Oehler MK, Hoffmann P, (2013) "Tryptic peptide reference data sets for MALDI imaging mass spectrometry on formalin-fixed ovarian cancer tissues." <i>J Proteome Res</i> <b>12</b>(1):308–15; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23214983 23214983]; doi: [https://dx.doi.org/10.1021/pr300996x 10.1021/pr300996x]; GPMDB: [http://gpmdb.org/data/keyword/23214983 31]. | #Meding S, Martin K, Gustafsson OJ, Eddes JS, Hack S, Oehler MK, Hoffmann P, (2013) "Tryptic peptide reference data sets for MALDI imaging mass spectrometry on formalin-fixed ovarian cancer tissues." <i>J Proteome Res</i> <b>12</b>(1):308–15; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23214983 23214983]; doi: [https://dx.doi.org/10.1021/pr300996x 10.1021/pr300996x]; GPMDB: [http://gpmdb.org/data/keyword/23214983 31]. | ||
#Tauro BJ, Greening DW, Mathias RA, Mathivanan S, Ji H, Simpson RJ, (2013) "Two distinct populations of exosomes are released from LIM1863 colon carcinoma cell-derived organoids." <i>Mol Cell Proteomics</i> <b>12</b>(3):587–98; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23230278 23230278]; doi: [https://dx.doi.org/10.1074/mcp.M112.021303 10.1074/mcp.M112.021303]; GPMDB: [http://gpmdb.org/data/keyword/23230278 20]. | #Tauro BJ, Greening DW, Mathias RA, Mathivanan S, Ji H, Simpson RJ, (2013) "Two distinct populations of exosomes are released from LIM1863 colon carcinoma cell-derived organoids." <i>Mol Cell Proteomics</i> <b>12</b>(3):587–98; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23230278 23230278]; doi: [https://dx.doi.org/10.1074/mcp.M112.021303 10.1074/mcp.M112.021303]; GPMDB: [http://gpmdb.org/data/keyword/23230278 20]. | ||
- | # () "" <i></i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/ ]; GPMDB: [http://gpmdb.org/data/keyword/23234512 43]. | + | #Segura V, Medina-Aunon JA, Guruceaga E, Gharbi SI, González-Tejedo C, Sánchez del Pino MM, Canals F, Fuentes M, Casal JI, Martínez-Bartolomé S, Elortza F, Mato JM, Arizmendi JM, Abian J, Oliveira E, Gil C, Vivanco F, Blanco F, Albar JP, Corrales FJ, (2013) "Spanish human proteome project: dissection of chromosome 16." <i>J Proteome Res</i> <b>12</b>(1):112–22; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23234512 23234512]; doi: [https://dx.doi.org/10.1021/pr300898u 10.1021/pr300898u]; GPMDB: [http://gpmdb.org/data/keyword/23234512 43]. |
#Farcas AM, Blackledge NP, Sudbery I, Long HK, McGouran JF, Rose NR, Lee S, Sims D, Cerase A, Sheahan TW, Koseki H, Brockdorff N, Ponting CP, Kessler BM, Klose RJ, (2012) "KDM2B links the Polycomb Repressive Complex 1 (PRC1) to recognition of CpG islands." <i>Elife</i> <b>1</b>:e00205; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23256043 23256043]; doi: [https://dx.doi.org/10.7554/eLife.00205 10.7554/eLife.00205]; GPMDB: [http://gpmdb.org/data/keyword/23256043 5]. | #Farcas AM, Blackledge NP, Sudbery I, Long HK, McGouran JF, Rose NR, Lee S, Sims D, Cerase A, Sheahan TW, Koseki H, Brockdorff N, Ponting CP, Kessler BM, Klose RJ, (2012) "KDM2B links the Polycomb Repressive Complex 1 (PRC1) to recognition of CpG islands." <i>Elife</i> <b>1</b>:e00205; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23256043 23256043]; doi: [https://dx.doi.org/10.7554/eLife.00205 10.7554/eLife.00205]; GPMDB: [http://gpmdb.org/data/keyword/23256043 5]. | ||
#Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA, (2013) "Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments." <i>Mol Cell Proteomics</i> <b>12</b>(3):825–31; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23266961 23266961]; doi: [https://dx.doi.org/10.1074/mcp.O112.027094 10.1074/mcp.O112.027094]; GPMDB: [http://gpmdb.org/data/keyword/23266961 72]. | #Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA, (2013) "Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments." <i>Mol Cell Proteomics</i> <b>12</b>(3):825–31; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23266961 23266961]; doi: [https://dx.doi.org/10.1074/mcp.O112.027094 10.1074/mcp.O112.027094]; GPMDB: [http://gpmdb.org/data/keyword/23266961 72]. | ||
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#Gunaratne J, Schmidt A, Quandt A, Neo SP, Saraç OS, Gracia T, Loguercio S, Ahrné E, Xia RL, Tan KH, Lössner C, Bähler J, Beyer A, Blackstock W, Aebersold R, (2013) "Extensive mass spectrometry-based analysis of the fission yeast proteome: the Schizosaccharomyces pombe PeptideAtlas." <i>Mol Cell Proteomics</i> <b>12</b>(6):1741–51; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23462206 23462206]; doi: [https://dx.doi.org/10.1074/mcp.M112.023754 10.1074/mcp.M112.023754]; GPMDB: [http://gpmdb.org/data/keyword/23462206 384]. | #Gunaratne J, Schmidt A, Quandt A, Neo SP, Saraç OS, Gracia T, Loguercio S, Ahrné E, Xia RL, Tan KH, Lössner C, Bähler J, Beyer A, Blackstock W, Aebersold R, (2013) "Extensive mass spectrometry-based analysis of the fission yeast proteome: the Schizosaccharomyces pombe PeptideAtlas." <i>Mol Cell Proteomics</i> <b>12</b>(6):1741–51; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23462206 23462206]; doi: [https://dx.doi.org/10.1074/mcp.M112.023754 10.1074/mcp.M112.023754]; GPMDB: [http://gpmdb.org/data/keyword/23462206 384]. | ||
#Hassan C, Kester MG, de Ru AH, Hombrink P, Drijfhout JW, Nijveen H, Leunissen JA, Heemskerk MH, Falkenburg JH, van Veelen PA, (2013) "The human leukocyte antigen-presented ligandome of B lymphocytes." <i>Mol Cell Proteomics</i> <b>12</b>(7):1829–43; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23481700 23481700]; doi: [https://dx.doi.org/10.1074/mcp.M112.024810 10.1074/mcp.M112.024810]; GPMDB: [http://gpmdb.org/data/keyword/23481700 191]. | #Hassan C, Kester MG, de Ru AH, Hombrink P, Drijfhout JW, Nijveen H, Leunissen JA, Heemskerk MH, Falkenburg JH, van Veelen PA, (2013) "The human leukocyte antigen-presented ligandome of B lymphocytes." <i>Mol Cell Proteomics</i> <b>12</b>(7):1829–43; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23481700 23481700]; doi: [https://dx.doi.org/10.1074/mcp.M112.024810 10.1074/mcp.M112.024810]; GPMDB: [http://gpmdb.org/data/keyword/23481700 191]. | ||
- | # () "" <i></i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/ ]; GPMDB: [http://gpmdb.org/data/keyword/23485197 148]. | + | #Urbaniak MD, Martin DM, Ferguson MA, (2013) "Global quantitative SILAC phosphoproteomics reveals differential phosphorylation is widespread between the procyclic and bloodstream form lifecycle stages of Trypanosoma brucei." <i>J Proteome Res</i> <b>12</b>(5):2233–44; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23485197 23485197]; doi: [https://dx.doi.org/10.1021/pr400086y 10.1021/pr400086y]; GPMDB: [http://gpmdb.org/data/keyword/23485197 148]. |
#van Nuland R, Smits AH, Pallaki P, Jansen PW, Vermeulen M, Timmers HT, (2013) "Quantitative dissection and stoichiometry determination of the human SET1/MLL histone methyltransferase complexes." <i>Mol Cell Biol</i> <b>33</b>(10):2067–77; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23508102 23508102]; doi: [https://dx.doi.org/10.1128/MCB.01742-12 10.1128/MCB.01742-12]; GPMDB: [http://gpmdb.org/data/keyword/23508102 52]. | #van Nuland R, Smits AH, Pallaki P, Jansen PW, Vermeulen M, Timmers HT, (2013) "Quantitative dissection and stoichiometry determination of the human SET1/MLL histone methyltransferase complexes." <i>Mol Cell Biol</i> <b>33</b>(10):2067–77; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23508102 23508102]; doi: [https://dx.doi.org/10.1128/MCB.01742-12 10.1128/MCB.01742-12]; GPMDB: [http://gpmdb.org/data/keyword/23508102 52]. | ||
#Papachristou EK, Roumeliotis TI, Chrysagi A, Trigoni C, Charvalos E, Townsend PA, Pavlakis K, Garbis SD, (2013) "The shotgun proteomic study of the human ThinPrep cervical smear using iTRAQ mass-tagging and 2D LC-FT-Orbitrap-MS: the detection of the human papillomavirus at the protein level." <i>J Proteome Res</i> <b>12</b>(5):2078–89; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23510160 23510160]; doi: [https://dx.doi.org/10.1021/pr301067r 10.1021/pr301067r]; GPMDB: [http://gpmdb.org/data/keyword/23510160 3]. | #Papachristou EK, Roumeliotis TI, Chrysagi A, Trigoni C, Charvalos E, Townsend PA, Pavlakis K, Garbis SD, (2013) "The shotgun proteomic study of the human ThinPrep cervical smear using iTRAQ mass-tagging and 2D LC-FT-Orbitrap-MS: the detection of the human papillomavirus at the protein level." <i>J Proteome Res</i> <b>12</b>(5):2078–89; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23510160 23510160]; doi: [https://dx.doi.org/10.1021/pr301067r 10.1021/pr301067r]; GPMDB: [http://gpmdb.org/data/keyword/23510160 3]. | ||
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#Gorbachev AY, Fisunov GY, Izraelson M, Evsyutina DV, Mazin PV, Alexeev DG, Pobeguts OV, Gorshkova TN, Kovalchuk SI, Kamashev DE, Govorun VM, (2013) "DNA repair in Mycoplasma gallisepticum." <i>BMC Genomics</i> <b>14</b>:726; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24148612 24148612]; doi: [https://dx.doi.org/10.1186/1471-2164-14-726 10.1186/1471-2164-14-726]; GPMDB: [http://gpmdb.org/data/keyword/24148612 1]. | #Gorbachev AY, Fisunov GY, Izraelson M, Evsyutina DV, Mazin PV, Alexeev DG, Pobeguts OV, Gorshkova TN, Kovalchuk SI, Kamashev DE, Govorun VM, (2013) "DNA repair in Mycoplasma gallisepticum." <i>BMC Genomics</i> <b>14</b>:726; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24148612 24148612]; doi: [https://dx.doi.org/10.1186/1471-2164-14-726 10.1186/1471-2164-14-726]; GPMDB: [http://gpmdb.org/data/keyword/24148612 1]. | ||
#McKnight H, Kelsey WP, Hooper DA, Hart TC, Mariotti A, (2014) "Proteomic analyses of human gingival and periodontal ligament fibroblasts." <i>J Periodontol</i> <b>85</b>(6):810–8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24171499 24171499]; doi: [https://dx.doi.org/10.1902/jop.2013.130161 10.1902/jop.2013.130161]; GPMDB: [http://gpmdb.org/data/keyword/24171499 8]. | #McKnight H, Kelsey WP, Hooper DA, Hart TC, Mariotti A, (2014) "Proteomic analyses of human gingival and periodontal ligament fibroblasts." <i>J Periodontol</i> <b>85</b>(6):810–8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24171499 24171499]; doi: [https://dx.doi.org/10.1902/jop.2013.130161 10.1902/jop.2013.130161]; GPMDB: [http://gpmdb.org/data/keyword/24171499 8]. | ||
+ | #Deeb SJ, Cox J, Schmidt-Supprian M, Mann M, (2014) "N-linked glycosylation enrichment for in-depth cell surface proteomics of diffuse large B-cell lymphoma subtypes." <i>Mol Cell Proteomics</i> <b>13</b>(1):240–51; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24190977 24190977]; doi: [https://dx.doi.org/10.1074/mcp.M113.033977 10.1074/mcp.M113.033977]; GPMDB: [http://gpmdb.org/data/keyword/24190977 40]. | ||
#English JA, Harauma A, Föcking M, Wynne K, Scaife C, Cagney G, Moriguchi T, Cotter DR, (2013) "Omega-3 fatty acid deficiency disrupts endocytosis, neuritogenesis, and mitochondrial protein pathways in the mouse hippocampus." <i>Front Genet</i> <b>4</b>:208; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24194745 24194745]; doi: [https://dx.doi.org/10.3389/fgene.2013.00208 10.3389/fgene.2013.00208]; GPMDB: [http://gpmdb.org/data/keyword/24194745 48]. | #English JA, Harauma A, Föcking M, Wynne K, Scaife C, Cagney G, Moriguchi T, Cotter DR, (2013) "Omega-3 fatty acid deficiency disrupts endocytosis, neuritogenesis, and mitochondrial protein pathways in the mouse hippocampus." <i>Front Genet</i> <b>4</b>:208; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24194745 24194745]; doi: [https://dx.doi.org/10.3389/fgene.2013.00208 10.3389/fgene.2013.00208]; GPMDB: [http://gpmdb.org/data/keyword/24194745 48]. | ||
#Fujita T, Asano Y, Ohtsuka J, Takada Y, Saito K, Ohki R, Fujii H, (2013) "Identification of telomere-associated molecules by engineered DNA-binding molecule-mediated chromatin immunoprecipitation (enChIP)." <i>Sci Rep</i> <b>3</b>:3171; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24201379 24201379]; doi: [https://dx.doi.org/10.1038/srep03171 10.1038/srep03171]; GPMDB: [http://gpmdb.org/data/keyword/24201379 30]. | #Fujita T, Asano Y, Ohtsuka J, Takada Y, Saito K, Ohki R, Fujii H, (2013) "Identification of telomere-associated molecules by engineered DNA-binding molecule-mediated chromatin immunoprecipitation (enChIP)." <i>Sci Rep</i> <b>3</b>:3171; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24201379 24201379]; doi: [https://dx.doi.org/10.1038/srep03171 10.1038/srep03171]; GPMDB: [http://gpmdb.org/data/keyword/24201379 30]. | ||
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#Thomae AW, Schade GO, Padeken J, Borath M, Vetter I, Kremmer E, Heun P, Imhof A, (2013) "A pair of centromeric proteins mediates reproductive isolation in Drosophila species." <i>Dev Cell</i> <b>27</b>(4):412–24; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24239514 24239514]; doi: [https://dx.doi.org/10.1016/j.devcel.2013.10.001 10.1016/j.devcel.2013.10.001]; GPMDB: [http://gpmdb.org/data/keyword/24239514 51]. | #Thomae AW, Schade GO, Padeken J, Borath M, Vetter I, Kremmer E, Heun P, Imhof A, (2013) "A pair of centromeric proteins mediates reproductive isolation in Drosophila species." <i>Dev Cell</i> <b>27</b>(4):412–24; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24239514 24239514]; doi: [https://dx.doi.org/10.1016/j.devcel.2013.10.001 10.1016/j.devcel.2013.10.001]; GPMDB: [http://gpmdb.org/data/keyword/24239514 51]. | ||
#Branca RM, Orre LM, Johansson HJ, Granholm V, Huss M, Pérez-Bercoff Å, Forshed J, Käll L, Lehtiö J, (2014) "HiRIEF LC-MS enables deep proteome coverage and unbiased proteogenomics." <i>Nat Methods</i> <b>11</b>(1):59–62; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24240322 24240322]; doi: [https://dx.doi.org/10.1038/nmeth.2732 10.1038/nmeth.2732]; GPMDB: [http://gpmdb.org/data/keyword/24240322 2592]. | #Branca RM, Orre LM, Johansson HJ, Granholm V, Huss M, Pérez-Bercoff Å, Forshed J, Käll L, Lehtiö J, (2014) "HiRIEF LC-MS enables deep proteome coverage and unbiased proteogenomics." <i>Nat Methods</i> <b>11</b>(1):59–62; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24240322 24240322]; doi: [https://dx.doi.org/10.1038/nmeth.2732 10.1038/nmeth.2732]; GPMDB: [http://gpmdb.org/data/keyword/24240322 2592]. | ||
- | # () "" <i></i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/ ]; GPMDB: [http://gpmdb.org/data/keyword/24248375 87]. | + | #Drake JM, Graham NA, Lee JK, Stoyanova T, Faltermeier CM, Sud S, Titz B, Huang J, Pienta KJ, Graeber TG, Witte ON, (2013) "Metastatic castration-resistant prostate cancer reveals intrapatient similarity and interpatient heterogeneity of therapeutic kinase targets." <i>Proc Natl Acad Sci U S A</i> <b>110</b>(49):E4762–9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24248375 24248375]; doi: [https://dx.doi.org/10.1073/pnas.1319948110 10.1073/pnas.1319948110]; GPMDB: [http://gpmdb.org/data/keyword/24248375 87]. |
#Chang C, Li L, Zhang C, Wu S, Guo K, Zi J, Chen Z, Jiang J, Ma J, Yu Q, Fan F, Qin P, Han M, Su N, Chen T, Wang K, Zhai L, Zhang T, Ying W, Xu Z, Zhang Y, Liu Y, Liu X, Zhong F, Shen H, Wang Q, Hou G, Zhao H, Li G, Liu S, Gu W, Wang G, Wang T, Zhang G, Qian X, Li N, He QY, Lin L, Yang P, Zhu Y, He F, Xu P, (2014) "Systematic analyses of the transcriptome, translatome, and proteome provide a global view and potential strategy for the C-HPP." <i>J Proteome Res</i> <b>13</b>(1):38–49; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24256510 24256510]; doi: [https://dx.doi.org/10.1021/pr4009018 10.1021/pr4009018]; GPMDB: [http://gpmdb.org/data/keyword/24256510 216]. | #Chang C, Li L, Zhang C, Wu S, Guo K, Zi J, Chen Z, Jiang J, Ma J, Yu Q, Fan F, Qin P, Han M, Su N, Chen T, Wang K, Zhai L, Zhang T, Ying W, Xu Z, Zhang Y, Liu Y, Liu X, Zhong F, Shen H, Wang Q, Hou G, Zhao H, Li G, Liu S, Gu W, Wang G, Wang T, Zhang G, Qian X, Li N, He QY, Lin L, Yang P, Zhu Y, He F, Xu P, (2014) "Systematic analyses of the transcriptome, translatome, and proteome provide a global view and potential strategy for the C-HPP." <i>J Proteome Res</i> <b>13</b>(1):38–49; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24256510 24256510]; doi: [https://dx.doi.org/10.1021/pr4009018 10.1021/pr4009018]; GPMDB: [http://gpmdb.org/data/keyword/24256510 216]. | ||
#Dagley LF, White CA, Liao Y, Shi W, Smyth GK, Orian JM, Emili A, Purcell AW, (2014) "Quantitative proteomic profiling reveals novel region-specific markers in the adult mouse brain." <i>Proteomics</i> <b>14</b>(2-3):241–61; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24259518 24259518]; doi: [https://dx.doi.org/10.1002/pmic.201300196 10.1002/pmic.201300196]; GPMDB: [http://gpmdb.org/data/keyword/24259518 56]. | #Dagley LF, White CA, Liao Y, Shi W, Smyth GK, Orian JM, Emili A, Purcell AW, (2014) "Quantitative proteomic profiling reveals novel region-specific markers in the adult mouse brain." <i>Proteomics</i> <b>14</b>(2-3):241–61; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24259518 24259518]; doi: [https://dx.doi.org/10.1002/pmic.201300196 10.1002/pmic.201300196]; GPMDB: [http://gpmdb.org/data/keyword/24259518 56]. | ||
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#Kume H, Muraoka S, Kuga T, Adachi J, Narumi R, Watanabe S, Kuwano M, Kodera Y, Matsushita K, Fukuoka J, Masuda T, Ishihama Y, Matsubara H, Nomura F, Tomonaga T, (2014) "Discovery of colorectal cancer biomarker candidates by membrane proteomic analysis and subsequent verification using selected reaction monitoring (SRM) and tissue microarray (TMA) analysis." <i>Mol Cell Proteomics</i> <b>13</b>(6):1471–84; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24687888 24687888]; doi: [https://dx.doi.org/10.1074/mcp.M113.037093 10.1074/mcp.M113.037093]; GPMDB: [http://gpmdb.org/data/keyword/24687888 6]. | #Kume H, Muraoka S, Kuga T, Adachi J, Narumi R, Watanabe S, Kuwano M, Kodera Y, Matsushita K, Fukuoka J, Masuda T, Ishihama Y, Matsubara H, Nomura F, Tomonaga T, (2014) "Discovery of colorectal cancer biomarker candidates by membrane proteomic analysis and subsequent verification using selected reaction monitoring (SRM) and tissue microarray (TMA) analysis." <i>Mol Cell Proteomics</i> <b>13</b>(6):1471–84; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24687888 24687888]; doi: [https://dx.doi.org/10.1074/mcp.M113.037093 10.1074/mcp.M113.037093]; GPMDB: [http://gpmdb.org/data/keyword/24687888 6]. | ||
#Guo X, Trudgian DC, Lemoff A, Yadavalli S, Mirzaei H, (2014) "Confetti: a multiprotease map of the HeLa proteome for comprehensive proteomics." <i>Mol Cell Proteomics</i> <b>13</b>(6):1573–84; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24696503 24696503]; doi: [https://dx.doi.org/10.1074/mcp.M113.035170 10.1074/mcp.M113.035170]; GPMDB: [http://gpmdb.org/data/keyword/24696503 99]. | #Guo X, Trudgian DC, Lemoff A, Yadavalli S, Mirzaei H, (2014) "Confetti: a multiprotease map of the HeLa proteome for comprehensive proteomics." <i>Mol Cell Proteomics</i> <b>13</b>(6):1573–84; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24696503 24696503]; doi: [https://dx.doi.org/10.1074/mcp.M113.035170 10.1074/mcp.M113.035170]; GPMDB: [http://gpmdb.org/data/keyword/24696503 99]. | ||
+ | #Hiemstra TF, Charles PD, Gracia T, Hester SS, Gatto L, Al-Lamki R, Floto RA, Su Y, Skepper JN, Lilley KS, Karet Frankl FE, (2014) "Human urinary exosomes as innate immune effectors." <i>J Am Soc Nephrol</i> <b>25</b>(9):2017–27; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24700864 24700864]; doi: [https://dx.doi.org/10.1681/ASN.2013101066 10.1681/ASN.2013101066]; GPMDB: [http://gpmdb.org/data/keyword/24700864 489]. | ||
#Shevchuk O, Abidi N, Klawonn F, Wissing J, Nimtz M, Kugler C, Steinert M, Goldmann T, Jänsch L, (2014) "HOPE-fixation of lung tissue allows retrospective proteome and phosphoproteome studies." <i>J Proteome Res</i> <b>13</b>(11):5230–9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24702127 24702127]; doi: [https://dx.doi.org/10.1021/pr500096a 10.1021/pr500096a]; GPMDB: [http://gpmdb.org/data/keyword/24702127 4]. | #Shevchuk O, Abidi N, Klawonn F, Wissing J, Nimtz M, Kugler C, Steinert M, Goldmann T, Jänsch L, (2014) "HOPE-fixation of lung tissue allows retrospective proteome and phosphoproteome studies." <i>J Proteome Res</i> <b>13</b>(11):5230–9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24702127 24702127]; doi: [https://dx.doi.org/10.1021/pr500096a 10.1021/pr500096a]; GPMDB: [http://gpmdb.org/data/keyword/24702127 4]. | ||
#Tsai CM, Wu HY, Su TH, Kuo CW, Huang HW, Chung CH, Chen CS, Khoo KH, Chen YJ, Lin KI, (2014) "Phosphoproteomic analyses reveal that galectin-1 augments the dynamics of B-cell receptor signaling." <i>J Proteomics</i> <b>103</b>:241–53; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24704852 24704852]; doi: [https://dx.doi.org/10.1016/j.jprot.2014.03.031 10.1016/j.jprot.2014.03.031]; GPMDB: [http://gpmdb.org/data/keyword/24704852 15]. | #Tsai CM, Wu HY, Su TH, Kuo CW, Huang HW, Chung CH, Chen CS, Khoo KH, Chen YJ, Lin KI, (2014) "Phosphoproteomic analyses reveal that galectin-1 augments the dynamics of B-cell receptor signaling." <i>J Proteomics</i> <b>103</b>:241–53; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24704852 24704852]; doi: [https://dx.doi.org/10.1016/j.jprot.2014.03.031 10.1016/j.jprot.2014.03.031]; GPMDB: [http://gpmdb.org/data/keyword/24704852 15]. | ||
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#Zub KA, Sousa MM, Sarno A, Sharma A, Demirovic A, Rao S, Young C, Aas PA, Ericsson I, Sundan A, Jensen ON, Slupphaug G, (2015) "Modulation of cell metabolic pathways and oxidative stress signaling contribute to acquired melphalan resistance in multiple myeloma cells." <i>PLoS One</i> <b>10</b>(3):e0119857; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25769101 25769101]; doi: [https://dx.doi.org/10.1371/journal.pone.0119857 10.1371/journal.pone.0119857]; GPMDB: [http://gpmdb.org/data/keyword/25769101 12]. | #Zub KA, Sousa MM, Sarno A, Sharma A, Demirovic A, Rao S, Young C, Aas PA, Ericsson I, Sundan A, Jensen ON, Slupphaug G, (2015) "Modulation of cell metabolic pathways and oxidative stress signaling contribute to acquired melphalan resistance in multiple myeloma cells." <i>PLoS One</i> <b>10</b>(3):e0119857; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25769101 25769101]; doi: [https://dx.doi.org/10.1371/journal.pone.0119857 10.1371/journal.pone.0119857]; GPMDB: [http://gpmdb.org/data/keyword/25769101 12]. | ||
#Zigdon H, Savidor A, Levin Y, Meshcheriakova A, Schiffmann R, Futerman AH, (2015) "Identification of a biomarker in cerebrospinal fluid for neuronopathic forms of Gaucher disease." <i>PLoS One</i> <b>10</b>(3):e0120194; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25775479 25775479]; doi: [https://dx.doi.org/10.1371/journal.pone.0120194 10.1371/journal.pone.0120194]; GPMDB: [http://gpmdb.org/data/keyword/25775479 27]. | #Zigdon H, Savidor A, Levin Y, Meshcheriakova A, Schiffmann R, Futerman AH, (2015) "Identification of a biomarker in cerebrospinal fluid for neuronopathic forms of Gaucher disease." <i>PLoS One</i> <b>10</b>(3):e0120194; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25775479 25775479]; doi: [https://dx.doi.org/10.1371/journal.pone.0120194 10.1371/journal.pone.0120194]; GPMDB: [http://gpmdb.org/data/keyword/25775479 27]. | ||
- | # () "" <i></i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/ ]; GPMDB: [http://gpmdb.org/data/keyword/25780947 12]. | + | #Shalit T, Elinger D, Savidor A, Gabashvili A, Levin Y, (2015) "MS1-based label-free proteomics using a quadrupole orbitrap mass spectrometer." <i>J Proteome Res</i> <b>14</b>(4):1979–86; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25780947 25780947]; doi: [https://dx.doi.org/10.1021/pr501045t 10.1021/pr501045t]; GPMDB: [http://gpmdb.org/data/keyword/25780947 12]. |
#Markmann S, Thelen M, Cornils K, Schweizer M, Brocke-Ahmadinejad N, Willnow T, Heeren J, Gieselmann V, Braulke T, Kollmann K, (2015) "Lrp1/LDL Receptor Play Critical Roles in Mannose 6-Phosphate-Independent Lysosomal Enzyme Targeting." <i>Traffic</i> <b>16</b>(7):743–59; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25786328 25786328]; doi: [https://dx.doi.org/10.1111/tra.12284 10.1111/tra.12284]; GPMDB: [http://gpmdb.org/data/keyword/25786328 3]. | #Markmann S, Thelen M, Cornils K, Schweizer M, Brocke-Ahmadinejad N, Willnow T, Heeren J, Gieselmann V, Braulke T, Kollmann K, (2015) "Lrp1/LDL Receptor Play Critical Roles in Mannose 6-Phosphate-Independent Lysosomal Enzyme Targeting." <i>Traffic</i> <b>16</b>(7):743–59; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25786328 25786328]; doi: [https://dx.doi.org/10.1111/tra.12284 10.1111/tra.12284]; GPMDB: [http://gpmdb.org/data/keyword/25786328 3]. | ||
#Bracht T, Schweinsberg V, Trippler M, Kohl M, Ahrens M, Padden J, Naboulsi W, Barkovits K, Megger DA, Eisenacher M, Borchers CH, Schlaak JF, Hoffmann AC, Weber F, Baba HA, Meyer HE, Sitek B, (2015) "Analysis of disease-associated protein expression using quantitative proteomics—fibulin-5 is expressed in association with hepatic fibrosis." <i>J Proteome Res</i> <b>14</b>(5):2278–86; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25807371 25807371]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00053 10.1021/acs.jproteome.5b00053]; GPMDB: [http://gpmdb.org/data/keyword/25807371 27]. | #Bracht T, Schweinsberg V, Trippler M, Kohl M, Ahrens M, Padden J, Naboulsi W, Barkovits K, Megger DA, Eisenacher M, Borchers CH, Schlaak JF, Hoffmann AC, Weber F, Baba HA, Meyer HE, Sitek B, (2015) "Analysis of disease-associated protein expression using quantitative proteomics—fibulin-5 is expressed in association with hepatic fibrosis." <i>J Proteome Res</i> <b>14</b>(5):2278–86; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25807371 25807371]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00053 10.1021/acs.jproteome.5b00053]; GPMDB: [http://gpmdb.org/data/keyword/25807371 27]. | ||
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#Berger ST, Ahmed S, Muntel J, Cuevas Polo N, Bachur R, Kentsis A, Steen J, Steen H, (2015) "MStern Blotting-High Throughput Polyvinylidene Fluoride (PVDF) Membrane-Based Proteomic Sample Preparation for 96-Well Plates." <i>Mol Cell Proteomics</i> <b>14</b>(10):2814–23; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26223766 26223766]; doi: [https://dx.doi.org/10.1074/mcp.O115.049650 10.1074/mcp.O115.049650]; GPMDB: [http://gpmdb.org/data/keyword/26223766 113]. | #Berger ST, Ahmed S, Muntel J, Cuevas Polo N, Bachur R, Kentsis A, Steen J, Steen H, (2015) "MStern Blotting-High Throughput Polyvinylidene Fluoride (PVDF) Membrane-Based Proteomic Sample Preparation for 96-Well Plates." <i>Mol Cell Proteomics</i> <b>14</b>(10):2814–23; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26223766 26223766]; doi: [https://dx.doi.org/10.1074/mcp.O115.049650 10.1074/mcp.O115.049650]; GPMDB: [http://gpmdb.org/data/keyword/26223766 113]. | ||
#Woo J, Han D, Park J, Kim SJ, Kim Y, (2015) "In-depth characterization of the secretome of mouse CNS cell lines by LC-MS/MS without prefractionation." <i>Proteomics</i> <b>15</b>(21):3617–22; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26227174 26227174]; doi: [https://dx.doi.org/10.1002/pmic.201400623 10.1002/pmic.201400623]; GPMDB: [http://gpmdb.org/data/keyword/26227174 27]. | #Woo J, Han D, Park J, Kim SJ, Kim Y, (2015) "In-depth characterization of the secretome of mouse CNS cell lines by LC-MS/MS without prefractionation." <i>Proteomics</i> <b>15</b>(21):3617–22; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26227174 26227174]; doi: [https://dx.doi.org/10.1002/pmic.201400623 10.1002/pmic.201400623]; GPMDB: [http://gpmdb.org/data/keyword/26227174 27]. | ||
- | # () "" <i></i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/ ]; GPMDB: [http://gpmdb.org/data/keyword/26227301 182]. | + | #Guo H, Garcia-Vedrenne AE, Isserlin R, Lugowski A, Morada A, Sun A, Miao Y, Kuzmanov U, Wan C, Ma H, Foltz K, Emili A, (2015) "Phosphoproteomic network analysis in the sea urchin Strongylocentrotus purpuratus reveals new candidates in egg activation." <i>Proteomics</i> <b>15</b>(23-24):4080–95; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26227301 26227301]; doi: [https://dx.doi.org/10.1002/pmic.201500159 10.1002/pmic.201500159]; GPMDB: [http://gpmdb.org/data/keyword/26227301 182]. |
#Na YR, Hong JH, Lee MY, Jung JH, Jung D, Kim YW, Son D, Choi M, Kim KP, Seok SH 2nd, (2015) "Proteomic Analysis Reveals Distinct Metabolic Differences Between Granulocyte-Macrophage Colony Stimulating Factor (GM-CSF) and Macrophage Colony Stimulating Factor (M-CSF) Grown Macrophages Derived from Murine Bone Marrow Cells." <i>Mol Cell Proteomics</i> <b>14</b>(10):2722–32; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26229149 26229149]; doi: [https://dx.doi.org/10.1074/mcp.M115.048744 10.1074/mcp.M115.048744]; GPMDB: [http://gpmdb.org/data/keyword/26229149 16]. | #Na YR, Hong JH, Lee MY, Jung JH, Jung D, Kim YW, Son D, Choi M, Kim KP, Seok SH 2nd, (2015) "Proteomic Analysis Reveals Distinct Metabolic Differences Between Granulocyte-Macrophage Colony Stimulating Factor (GM-CSF) and Macrophage Colony Stimulating Factor (M-CSF) Grown Macrophages Derived from Murine Bone Marrow Cells." <i>Mol Cell Proteomics</i> <b>14</b>(10):2722–32; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26229149 26229149]; doi: [https://dx.doi.org/10.1074/mcp.M115.048744 10.1074/mcp.M115.048744]; GPMDB: [http://gpmdb.org/data/keyword/26229149 16]. | ||
#Haurogné K, Pavlovic M, Rogniaux H, Bach JM, Lieubeau B, (2015) "Type 1 Diabetes Prone NOD Mice Have Diminished Cxcr1 mRNA Expression in Polymorphonuclear Neutrophils and CD4+ T Lymphocytes." <i>PLoS One</i> <b>10</b>(7):e0134365; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26230114 26230114]; doi: [https://dx.doi.org/10.1371/journal.pone.0134365 10.1371/journal.pone.0134365]; GPMDB: [http://gpmdb.org/data/keyword/26230114 12]. | #Haurogné K, Pavlovic M, Rogniaux H, Bach JM, Lieubeau B, (2015) "Type 1 Diabetes Prone NOD Mice Have Diminished Cxcr1 mRNA Expression in Polymorphonuclear Neutrophils and CD4+ T Lymphocytes." <i>PLoS One</i> <b>10</b>(7):e0134365; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26230114 26230114]; doi: [https://dx.doi.org/10.1371/journal.pone.0134365 10.1371/journal.pone.0134365]; GPMDB: [http://gpmdb.org/data/keyword/26230114 12]. | ||
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#Kieselbach T, Zijnge V, Granström E, Oscarsson J, (2015) "Proteomics of Aggregatibacter actinomycetemcomitans Outer Membrane Vesicles." <i>PLoS One</i> <b>10</b>(9):e0138591; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26381655 26381655]; doi: [https://dx.doi.org/10.1371/journal.pone.0138591 10.1371/journal.pone.0138591]; GPMDB: [http://gpmdb.org/data/keyword/26381655 5]. | #Kieselbach T, Zijnge V, Granström E, Oscarsson J, (2015) "Proteomics of Aggregatibacter actinomycetemcomitans Outer Membrane Vesicles." <i>PLoS One</i> <b>10</b>(9):e0138591; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26381655 26381655]; doi: [https://dx.doi.org/10.1371/journal.pone.0138591 10.1371/journal.pone.0138591]; GPMDB: [http://gpmdb.org/data/keyword/26381655 5]. | ||
#Goris T, Schiffmann CL, Gadkari J, Schubert T, Seifert J, Jehmlich N, von Bergen M, Diekert G, (2015) "Proteomics of the organohalide-respiring Epsilonproteobacterium Sulfurospirillum multivorans adapted to tetrachloroethene and other energy substrates." <i>Sci Rep</i> <b>5</b>:13794; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26387727 26387727]; doi: [https://dx.doi.org/10.1038/srep13794 10.1038/srep13794]; GPMDB: [http://gpmdb.org/data/keyword/26387727 36]. | #Goris T, Schiffmann CL, Gadkari J, Schubert T, Seifert J, Jehmlich N, von Bergen M, Diekert G, (2015) "Proteomics of the organohalide-respiring Epsilonproteobacterium Sulfurospirillum multivorans adapted to tetrachloroethene and other energy substrates." <i>Sci Rep</i> <b>5</b>:13794; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26387727 26387727]; doi: [https://dx.doi.org/10.1038/srep13794 10.1038/srep13794]; GPMDB: [http://gpmdb.org/data/keyword/26387727 36]. | ||
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#Paulo JA, O'Connell JD, Gaun A, Gygi SP, (2015) "Proteome-wide quantitative multiplexed profiling of protein expression: carbon-source dependency in Saccharomyces cerevisiae." <i>Mol Biol Cell</i> <b>26</b>(22):4063–74; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26399295 26399295]; doi: [https://dx.doi.org/10.1091/mbc.E15-07-0499 10.1091/mbc.E15-07-0499]; GPMDB: [http://gpmdb.org/data/keyword/26399295 1]. | #Paulo JA, O'Connell JD, Gaun A, Gygi SP, (2015) "Proteome-wide quantitative multiplexed profiling of protein expression: carbon-source dependency in Saccharomyces cerevisiae." <i>Mol Biol Cell</i> <b>26</b>(22):4063–74; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26399295 26399295]; doi: [https://dx.doi.org/10.1091/mbc.E15-07-0499 10.1091/mbc.E15-07-0499]; GPMDB: [http://gpmdb.org/data/keyword/26399295 1]. | ||
#Liu T, Tian CF, Chen WX, (2015) "Site-Specific Ser/Thr/Tyr Phosphoproteome of Sinorhizobium meliloti at Stationary Phase." <i>PLoS One</i> <b>10</b>(9):e0139143; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26401955 26401955]; doi: [https://dx.doi.org/10.1371/journal.pone.0139143 10.1371/journal.pone.0139143]; GPMDB: [http://gpmdb.org/data/keyword/26401955 2]. | #Liu T, Tian CF, Chen WX, (2015) "Site-Specific Ser/Thr/Tyr Phosphoproteome of Sinorhizobium meliloti at Stationary Phase." <i>PLoS One</i> <b>10</b>(9):e0139143; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26401955 26401955]; doi: [https://dx.doi.org/10.1371/journal.pone.0139143 10.1371/journal.pone.0139143]; GPMDB: [http://gpmdb.org/data/keyword/26401955 2]. | ||
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#Sahebekhtiari N, Thomsen MM, Sloth JJ, Stenbroen V, Zeviani M, Gregersen N, Viscomi C, Palmfeldt J, (2016) "Quantitative proteomics suggests metabolic reprogramming during ETHE1 deficiency." <i>Proteomics</i> <b>16</b>(7):1166–76; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26867521 26867521]; doi: [https://dx.doi.org/10.1002/pmic.201500336 10.1002/pmic.201500336]; GPMDB: [http://gpmdb.org/data/keyword/26867521 50]. | #Sahebekhtiari N, Thomsen MM, Sloth JJ, Stenbroen V, Zeviani M, Gregersen N, Viscomi C, Palmfeldt J, (2016) "Quantitative proteomics suggests metabolic reprogramming during ETHE1 deficiency." <i>Proteomics</i> <b>16</b>(7):1166–76; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26867521 26867521]; doi: [https://dx.doi.org/10.1002/pmic.201500336 10.1002/pmic.201500336]; GPMDB: [http://gpmdb.org/data/keyword/26867521 50]. | ||
#Lamberti Y, Cafiero JH, Surmann K, Valdez H, Holubova J, Večerek B, Sebo P, Schmidt F, Völker U, Rodriguez ME, (2016) "Proteome analysis of Bordetella pertussis isolated from human macrophages." <i>J Proteomics</i> <b>136</b>:55–67; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26873878 26873878]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.02.002 10.1016/j.jprot.2016.02.002]; GPMDB: [http://gpmdb.org/data/keyword/26873878 9]. | #Lamberti Y, Cafiero JH, Surmann K, Valdez H, Holubova J, Večerek B, Sebo P, Schmidt F, Völker U, Rodriguez ME, (2016) "Proteome analysis of Bordetella pertussis isolated from human macrophages." <i>J Proteomics</i> <b>136</b>:55–67; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26873878 26873878]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.02.002 10.1016/j.jprot.2016.02.002]; GPMDB: [http://gpmdb.org/data/keyword/26873878 9]. | ||
- | # () "" <i></i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/ ]; GPMDB: [http://gpmdb.org/data/keyword/26878232 1]. | + | #Schneider RK, Schenone M, Ferreira MV, Kramann R, Joyce CE, Hartigan C, Beier F, Brümmendorf TH, Germing U, Platzbecker U, Büsche G, Knüchel R, Chen MC, Waters CS, Chen E, Chu LP, Novina CD, Lindsley RC, Carr SA, Ebert BL, (2016) "Rps14 haploinsufficiency causes a block in erythroid differentiation mediated by S100A8 and S100A9." <i>Nat Med</i> <b>22</b>(3):288–97; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26878232 26878232]; doi: [https://dx.doi.org/10.1038/nm.4047 10.1038/nm.4047]; GPMDB: [http://gpmdb.org/data/keyword/26878232 1]. |
#Knöppel A, Näsvall J, Andersson DI, (2016) "Compensating the Fitness Costs of Synonymous Mutations." <i>Mol Biol Evol</i> <b>33</b>(6):1461–77; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26882986 26882986]; doi: [https://dx.doi.org/10.1093/molbev/msw028 10.1093/molbev/msw028]; GPMDB: [http://gpmdb.org/data/keyword/26882986 72]. | #Knöppel A, Näsvall J, Andersson DI, (2016) "Compensating the Fitness Costs of Synonymous Mutations." <i>Mol Biol Evol</i> <b>33</b>(6):1461–77; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26882986 26882986]; doi: [https://dx.doi.org/10.1093/molbev/msw028 10.1093/molbev/msw028]; GPMDB: [http://gpmdb.org/data/keyword/26882986 72]. | ||
#Creedon H, Gómez-Cuadrado L, Tarnauskaitė Ž, Balla J, Canel M, MacLeod KG, Serrels B, Fraser C, Unciti-Broceta A, Tracey N, Le Bihan T, Klinowska T, Sims AH, Byron A, Brunton VG, (2016) "Identification of novel pathways linking epithelial-to-mesenchymal transition with resistance to HER2-targeted therapy." <i>Oncotarget</i> <b>7</b>(10):11539–52; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26883193 26883193]; doi: [https://dx.doi.org/10.18632/oncotarget.7317 10.18632/oncotarget.7317]; GPMDB: [http://gpmdb.org/data/keyword/26883193 6]. | #Creedon H, Gómez-Cuadrado L, Tarnauskaitė Ž, Balla J, Canel M, MacLeod KG, Serrels B, Fraser C, Unciti-Broceta A, Tracey N, Le Bihan T, Klinowska T, Sims AH, Byron A, Brunton VG, (2016) "Identification of novel pathways linking epithelial-to-mesenchymal transition with resistance to HER2-targeted therapy." <i>Oncotarget</i> <b>7</b>(10):11539–52; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26883193 26883193]; doi: [https://dx.doi.org/10.18632/oncotarget.7317 10.18632/oncotarget.7317]; GPMDB: [http://gpmdb.org/data/keyword/26883193 6]. | ||
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#Lee HL, Chiang IC, Liang SY, Lee DY, Chang GD, Wang KY, Lin SY, Shih YL, (2016) "Quantitative Proteomics Analysis Reveals the Min System of Escherichia coli Modulates Reversible Protein Association with the Inner Membrane." <i>Mol Cell Proteomics</i> <b>15</b>(5):1572–83; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26889046 26889046]; doi: [https://dx.doi.org/10.1074/mcp.M115.053603 10.1074/mcp.M115.053603]; GPMDB: [http://gpmdb.org/data/keyword/26889046 4]. | #Lee HL, Chiang IC, Liang SY, Lee DY, Chang GD, Wang KY, Lin SY, Shih YL, (2016) "Quantitative Proteomics Analysis Reveals the Min System of Escherichia coli Modulates Reversible Protein Association with the Inner Membrane." <i>Mol Cell Proteomics</i> <b>15</b>(5):1572–83; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26889046 26889046]; doi: [https://dx.doi.org/10.1074/mcp.M115.053603 10.1074/mcp.M115.053603]; GPMDB: [http://gpmdb.org/data/keyword/26889046 4]. | ||
#Hiramatsu K, Yoshino K, Serada S, Yoshihara K, Hori Y, Fujimoto M, Matsuzaki S, Egawa-Takata T, Kobayashi E, Ueda Y, Morii E, Enomoto T, Naka T, Kimura T, (2016) "Similar protein expression profiles of ovarian and endometrial high-grade serous carcinomas." <i>Br J Cancer</i> <b>114</b>(5):554–61; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26889980 26889980]; doi: [https://dx.doi.org/10.1038/bjc.2016.27 10.1038/bjc.2016.27]; GPMDB: [http://gpmdb.org/data/keyword/26889980 6]. | #Hiramatsu K, Yoshino K, Serada S, Yoshihara K, Hori Y, Fujimoto M, Matsuzaki S, Egawa-Takata T, Kobayashi E, Ueda Y, Morii E, Enomoto T, Naka T, Kimura T, (2016) "Similar protein expression profiles of ovarian and endometrial high-grade serous carcinomas." <i>Br J Cancer</i> <b>114</b>(5):554–61; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26889980 26889980]; doi: [https://dx.doi.org/10.1038/bjc.2016.27 10.1038/bjc.2016.27]; GPMDB: [http://gpmdb.org/data/keyword/26889980 6]. | ||
+ | #Adav SS, Gallart-Palau X, Tan KH, Lim SK, Tam JP, Sze SK, (2016) "Dementia-linked amyloidosis is associated with brain protein deamidation as revealed by proteomic profiling of human brain tissues." <i>Mol Brain</i> <b>9</b>:20; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26892330 26892330]; doi: [https://dx.doi.org/10.1186/s13041-016-0200-z 10.1186/s13041-016-0200-z]; GPMDB: [http://gpmdb.org/data/keyword/26892330 4]. | ||
#Sieber J, Hauer C, Bhuvanagiri M, Leicht S, Krijgsveld J, Neu-Yilik G, Hentze MW, Kulozik AE, (2016) "Proteomic Analysis Reveals Branch-specific Regulation of the Unfolded Protein Response by Nonsense-mediated mRNA Decay." <i>Mol Cell Proteomics</i> <b>15</b>(5):1584–97; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26896796 26896796]; doi: [https://dx.doi.org/10.1074/mcp.M115.054056 10.1074/mcp.M115.054056]; GPMDB: [http://gpmdb.org/data/keyword/26896796 4]. | #Sieber J, Hauer C, Bhuvanagiri M, Leicht S, Krijgsveld J, Neu-Yilik G, Hentze MW, Kulozik AE, (2016) "Proteomic Analysis Reveals Branch-specific Regulation of the Unfolded Protein Response by Nonsense-mediated mRNA Decay." <i>Mol Cell Proteomics</i> <b>15</b>(5):1584–97; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26896796 26896796]; doi: [https://dx.doi.org/10.1074/mcp.M115.054056 10.1074/mcp.M115.054056]; GPMDB: [http://gpmdb.org/data/keyword/26896796 4]. | ||
#Zilkenat S, Franz-Wachtel M, Stierhof YD, Galán JE, Macek B, Wagner S, (2016) "Determination of the Stoichiometry of the Complete Bacterial Type III Secretion Needle Complex Using a Combined Quantitative Proteomic Approach." <i>Mol Cell Proteomics</i> <b>15</b>(5):1598–609; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26900162 26900162]; doi: [https://dx.doi.org/10.1074/mcp.M115.056598 10.1074/mcp.M115.056598]; GPMDB: [http://gpmdb.org/data/keyword/26900162 18]. | #Zilkenat S, Franz-Wachtel M, Stierhof YD, Galán JE, Macek B, Wagner S, (2016) "Determination of the Stoichiometry of the Complete Bacterial Type III Secretion Needle Complex Using a Combined Quantitative Proteomic Approach." <i>Mol Cell Proteomics</i> <b>15</b>(5):1598–609; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26900162 26900162]; doi: [https://dx.doi.org/10.1074/mcp.M115.056598 10.1074/mcp.M115.056598]; GPMDB: [http://gpmdb.org/data/keyword/26900162 18]. | ||
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#Yang W, Jackson B, Zhang H, (2016) "Identification of glycoproteins associated with HIV latently infected cells using quantitative glycoproteomics." <i>Proteomics</i> <b>16</b>(13):1872–80; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27195445 27195445]; doi: [https://dx.doi.org/10.1002/pmic.201500215 10.1002/pmic.201500215]; GPMDB: [http://gpmdb.org/data/keyword/27195445 12]. | #Yang W, Jackson B, Zhang H, (2016) "Identification of glycoproteins associated with HIV latently infected cells using quantitative glycoproteomics." <i>Proteomics</i> <b>16</b>(13):1872–80; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27195445 27195445]; doi: [https://dx.doi.org/10.1002/pmic.201500215 10.1002/pmic.201500215]; GPMDB: [http://gpmdb.org/data/keyword/27195445 12]. | ||
#Liang W, Ward LJ, Karlsson H, Ljunggren SA, Li W, Lindahl M, Yuan XM, (2016) "Distinctive proteomic profiles among different regions of human carotid plaques in men and women." <i>Sci Rep</i> <b>6</b>:26231; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27198765 27198765]; doi: [https://dx.doi.org/10.1038/srep26231 10.1038/srep26231]; GPMDB: [http://gpmdb.org/data/keyword/27198765 60]. | #Liang W, Ward LJ, Karlsson H, Ljunggren SA, Li W, Lindahl M, Yuan XM, (2016) "Distinctive proteomic profiles among different regions of human carotid plaques in men and women." <i>Sci Rep</i> <b>6</b>:26231; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27198765 27198765]; doi: [https://dx.doi.org/10.1038/srep26231 10.1038/srep26231]; GPMDB: [http://gpmdb.org/data/keyword/27198765 60]. | ||
+ | #Arshid S, Tahir M, Fontes B, Montero EF, Castro MS, Sidoli S, Schwämmle V, Roepstorff P, Fontes W, (2016) "Neutrophil proteomic analysis reveals the participation of antioxidant enzymes, motility and ribosomal proteins in the prevention of ischemic effects by preconditioning." <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27208787 27208787]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.05.016 10.1016/j.jprot.2016.05.016]; GPMDB: [http://gpmdb.org/data/keyword/27208787 5]. | ||
#Virant-Klun I, Leicht S, Hughes C, Krijgsveld J, (2016) "Identification of Maturation-Specific Proteins by Single-Cell Proteomics of Human Oocytes." <i>Mol Cell Proteomics</i> <b>15</b>(8):2616–27; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27215607 27215607]; doi: [https://dx.doi.org/10.1074/mcp.M115.056887 10.1074/mcp.M115.056887]; GPMDB: [http://gpmdb.org/data/keyword/27215607 18]. | #Virant-Klun I, Leicht S, Hughes C, Krijgsveld J, (2016) "Identification of Maturation-Specific Proteins by Single-Cell Proteomics of Human Oocytes." <i>Mol Cell Proteomics</i> <b>15</b>(8):2616–27; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27215607 27215607]; doi: [https://dx.doi.org/10.1074/mcp.M115.056887 10.1074/mcp.M115.056887]; GPMDB: [http://gpmdb.org/data/keyword/27215607 18]. | ||
#Yu J, Storer BE, Kushekhar K, Abu Zaid M, Zhang Q, Gafken PR, Ogata Y, Martin PJ, Flowers ME, Hansen JA, Arora M, Cutler C, Jagasia M, Pidala J, Hamilton BK, Chen GL, Pusic I, Lee SJ, Paczesny S, (2016) "Biomarker Panel for Chronic Graft-Versus-Host Disease." <i>J Clin Oncol</i> <b>34</b>(22):2583–90; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27217465 27217465]; doi: [https://dx.doi.org/10.1200/JCO.2015.65.9615 10.1200/JCO.2015.65.9615]; GPMDB: [http://gpmdb.org/data/keyword/27217465 3]. | #Yu J, Storer BE, Kushekhar K, Abu Zaid M, Zhang Q, Gafken PR, Ogata Y, Martin PJ, Flowers ME, Hansen JA, Arora M, Cutler C, Jagasia M, Pidala J, Hamilton BK, Chen GL, Pusic I, Lee SJ, Paczesny S, (2016) "Biomarker Panel for Chronic Graft-Versus-Host Disease." <i>J Clin Oncol</i> <b>34</b>(22):2583–90; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27217465 27217465]; doi: [https://dx.doi.org/10.1200/JCO.2015.65.9615 10.1200/JCO.2015.65.9615]; GPMDB: [http://gpmdb.org/data/keyword/27217465 3]. | ||
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#Ahrné E, Glatter T, Viganò C, Schubert Cv, Nigg EA, Schmidt A, (2016) "Evaluation and Improvement of Quantification Accuracy in Isobaric Mass Tag-Based Protein Quantification Experiments." <i>J Proteome Res</i> <b>15</b>(8):2537–47; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27345528 27345528]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00066 10.1021/acs.jproteome.6b00066]; GPMDB: [http://gpmdb.org/data/keyword/27345528 41]. | #Ahrné E, Glatter T, Viganò C, Schubert Cv, Nigg EA, Schmidt A, (2016) "Evaluation and Improvement of Quantification Accuracy in Isobaric Mass Tag-Based Protein Quantification Experiments." <i>J Proteome Res</i> <b>15</b>(8):2537–47; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27345528 27345528]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00066 10.1021/acs.jproteome.6b00066]; GPMDB: [http://gpmdb.org/data/keyword/27345528 41]. | ||
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#Carrier M, Joint M, Lutzing R, Page A, Rochette-Egly C, (2016) "Phosphoproteome and Transcriptome of RA-Responsive and RA-Resistant Breast Cancer Cell Lines." <i>PLoS One</i> <b>11</b>(6):e0157290; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27362937 27362937]; doi: [https://dx.doi.org/10.1371/journal.pone.0157290 10.1371/journal.pone.0157290]; GPMDB: [http://gpmdb.org/data/keyword/27362937 6]. | #Carrier M, Joint M, Lutzing R, Page A, Rochette-Egly C, (2016) "Phosphoproteome and Transcriptome of RA-Responsive and RA-Resistant Breast Cancer Cell Lines." <i>PLoS One</i> <b>11</b>(6):e0157290; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27362937 27362937]; doi: [https://dx.doi.org/10.1371/journal.pone.0157290 10.1371/journal.pone.0157290]; GPMDB: [http://gpmdb.org/data/keyword/27362937 6]. | ||
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#Carabetta VJ, Greco TM, Tanner AW, Cristea IM, Dubnau D, (2016) "Temporal Regulation of the <i>Bacillus subtilis</i> Acetylome and Evidence for a Role of MreB Acetylation in Cell Wall Growth." <i>mSystems</i> <b>1</b>(3):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27376153 27376153]; doi: [https://dx.doi.org/10.1128/mSystems.00005-16 10.1128/mSystems.00005-16]; GPMDB: [http://gpmdb.org/data/keyword/27376153 30]. | #Carabetta VJ, Greco TM, Tanner AW, Cristea IM, Dubnau D, (2016) "Temporal Regulation of the <i>Bacillus subtilis</i> Acetylome and Evidence for a Role of MreB Acetylation in Cell Wall Growth." <i>mSystems</i> <b>1</b>(3):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27376153 27376153]; doi: [https://dx.doi.org/10.1128/mSystems.00005-16 10.1128/mSystems.00005-16]; GPMDB: [http://gpmdb.org/data/keyword/27376153 30]. | ||
#Sysoev VO, Fischer B, Frese CK, Gupta I, Krijgsveld J, Hentze MW, Castello A, Ephrussi A, (2016) "Global changes of the RNA-bound proteome during the maternal-to-zygotic transition in Drosophila." <i>Nat Commun</i> <b>7</b>:12128; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27378189 27378189]; doi: [https://dx.doi.org/10.1038/ncomms12128 10.1038/ncomms12128]; GPMDB: [http://gpmdb.org/data/keyword/27378189 25]. | #Sysoev VO, Fischer B, Frese CK, Gupta I, Krijgsveld J, Hentze MW, Castello A, Ephrussi A, (2016) "Global changes of the RNA-bound proteome during the maternal-to-zygotic transition in Drosophila." <i>Nat Commun</i> <b>7</b>:12128; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27378189 27378189]; doi: [https://dx.doi.org/10.1038/ncomms12128 10.1038/ncomms12128]; GPMDB: [http://gpmdb.org/data/keyword/27378189 25]. | ||
- | #Ashford P, Hernandez A, Greco TM, Buch A, Sodeik B, Cristea IM, | + | #Ashford P, Hernandez A, Greco TM, Buch A, Sodeik B, Cristea IM, Grünewald K, Shepherd A, Topf M, (2016) "HVint: A Strategy for Identifying Novel Protein-Protein Interactions in Herpes Simplex Virus Type 1." <i>Mol Cell Proteomics</i> <b>15</b>(9):2939–53; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27384951 27384951]; doi: [https://dx.doi.org/10.1074/mcp.M116.058552 10.1074/mcp.M116.058552]; GPMDB: [http://gpmdb.org/data/keyword/27384951 19]. |
#Picariello G, Addeo F, Ferranti P, Nocerino R, Paparo L, Passariello A, Dallas DC, Robinson RC, Barile D, Canani RB, (2016) "Antibody-independent identification of bovine milk-derived peptides in breast-milk." <i>Food Funct</i> <b>7</b>(8):3402–9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27396729 27396729]; doi: [https://dx.doi.org/10.1039/c6fo00731g 10.1039/c6fo00731g]; GPMDB: [http://gpmdb.org/data/keyword/27396729 12]. | #Picariello G, Addeo F, Ferranti P, Nocerino R, Paparo L, Passariello A, Dallas DC, Robinson RC, Barile D, Canani RB, (2016) "Antibody-independent identification of bovine milk-derived peptides in breast-milk." <i>Food Funct</i> <b>7</b>(8):3402–9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27396729 27396729]; doi: [https://dx.doi.org/10.1039/c6fo00731g 10.1039/c6fo00731g]; GPMDB: [http://gpmdb.org/data/keyword/27396729 12]. | ||
#Hampoelz B, Mackmull MT, Machado P, Ronchi P, Bui KH, Schieber N, Santarella-Mellwig R, Necakov A, Andrés-Pons A, Philippe JM, Lecuit T, Schwab Y, Beck M, (2016) "Pre-assembled Nuclear Pores Insert into the Nuclear Envelope during Early Development." <i>Cell</i> <b>166</b>(3):664–78; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27397507 27397507]; doi: [https://dx.doi.org/10.1016/j.cell.2016.06.015 10.1016/j.cell.2016.06.015]; GPMDB: [http://gpmdb.org/data/keyword/27397507 18]. | #Hampoelz B, Mackmull MT, Machado P, Ronchi P, Bui KH, Schieber N, Santarella-Mellwig R, Necakov A, Andrés-Pons A, Philippe JM, Lecuit T, Schwab Y, Beck M, (2016) "Pre-assembled Nuclear Pores Insert into the Nuclear Envelope during Early Development." <i>Cell</i> <b>166</b>(3):664–78; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27397507 27397507]; doi: [https://dx.doi.org/10.1016/j.cell.2016.06.015 10.1016/j.cell.2016.06.015]; GPMDB: [http://gpmdb.org/data/keyword/27397507 18]. | ||
#Konstantinell A, Bruun JA, Olsen R, Aspar A, Škalko-Basnet N, Sveinbjørnsson B, Moens U, (2016) "Secretomic analysis of extracellular vesicles originating from Polyomavirus-negative and Polyomavirus-positive merkel cell carcinoma cell lines." <i>Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27402257 27402257]; doi: [https://dx.doi.org/10.1002/pmic.201600223 10.1002/pmic.201600223]; GPMDB: [http://gpmdb.org/data/keyword/27402257 28]. | #Konstantinell A, Bruun JA, Olsen R, Aspar A, Škalko-Basnet N, Sveinbjørnsson B, Moens U, (2016) "Secretomic analysis of extracellular vesicles originating from Polyomavirus-negative and Polyomavirus-positive merkel cell carcinoma cell lines." <i>Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27402257 27402257]; doi: [https://dx.doi.org/10.1002/pmic.201600223 10.1002/pmic.201600223]; GPMDB: [http://gpmdb.org/data/keyword/27402257 28]. | ||
- | #Shraibman B, | + | #Shraibman B, Kadosh DM, Barnea E, Admon A, (2016) "Human Leukocyte Antigen (HLA) Peptides Derived from Tumor Antigens Induced by Inhibition of DNA Methylation for Development of Drug-facilitated Immunotherapy." <i>Mol Cell Proteomics</i> <b>15</b>(9):3058–70; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27412690 27412690]; doi: [https://dx.doi.org/10.1074/mcp.M116.060350 10.1074/mcp.M116.060350]; GPMDB: [http://gpmdb.org/data/keyword/27412690 60]. |
#Müller S, Balaz M, Stefanicka P, Varga L, Amri EZ, Ukropec J, Wollscheid B, Wolfrum C, (2016) "Proteomic Analysis of Human Brown Adipose Tissue Reveals Utilization of Coupled and Uncoupled Energy Expenditure Pathways." <i>Sci Rep</i> <b>6</b>:30030; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27418403 27418403]; doi: [https://dx.doi.org/10.1038/srep30030 10.1038/srep30030]; GPMDB: [http://gpmdb.org/data/keyword/27418403 32]. | #Müller S, Balaz M, Stefanicka P, Varga L, Amri EZ, Ukropec J, Wollscheid B, Wolfrum C, (2016) "Proteomic Analysis of Human Brown Adipose Tissue Reveals Utilization of Coupled and Uncoupled Energy Expenditure Pathways." <i>Sci Rep</i> <b>6</b>:30030; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27418403 27418403]; doi: [https://dx.doi.org/10.1038/srep30030 10.1038/srep30030]; GPMDB: [http://gpmdb.org/data/keyword/27418403 32]. | ||
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#Zhou Y, Xiong L, Zhang Y, Yu R, Jiang X, Xu G, (2016) "Quantitative proteomics identifies myoferlin as a novel regulator of A Disintegrin and Metalloproteinase 12 in HeLa cells." <i>J Proteomics</i> <b>148</b>:94–104; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27432471 27432471]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.07.015 10.1016/j.jprot.2016.07.015]; GPMDB: [http://gpmdb.org/data/keyword/27432471 14]. | #Zhou Y, Xiong L, Zhang Y, Yu R, Jiang X, Xu G, (2016) "Quantitative proteomics identifies myoferlin as a novel regulator of A Disintegrin and Metalloproteinase 12 in HeLa cells." <i>J Proteomics</i> <b>148</b>:94–104; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27432471 27432471]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.07.015 10.1016/j.jprot.2016.07.015]; GPMDB: [http://gpmdb.org/data/keyword/27432471 14]. | ||
- | #Li X, Tran KM, Aziz KE, Sorokin AV, Chen J, Wang W, (2016) "Defining the | + | #Li X, Tran KM, Aziz KE, Sorokin AV, Chen J, Wang W, (2016) "Defining the Protein-Protein Interaction Network of the Human Protein Tyrosine Phosphatase Family." <i>Mol Cell Proteomics</i> <b>15</b>(9):3030–44; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27432908 27432908]; doi: [https://dx.doi.org/10.1074/mcp.M116.060277 10.1074/mcp.M116.060277]; GPMDB: [http://gpmdb.org/data/keyword/27432908 88]. |
#Suárez-Cortes P, Sharma V, Bertuccini L, Costa G, Bannerman NL, Sannella AR, Williamson K, Klemba M, Levashina EA, Lasonder E, Alano P, (2016) "Comparative proteomics and functional analysis reveal a role of P. falciparum osmiophilic bodies in malaria parasite transmission." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27432909 27432909]; doi: [https://dx.doi.org/10.1074/mcp.M116.060681 10.1074/mcp.M116.060681]; GPMDB: [http://gpmdb.org/data/keyword/27432909 162]. | #Suárez-Cortes P, Sharma V, Bertuccini L, Costa G, Bannerman NL, Sannella AR, Williamson K, Klemba M, Levashina EA, Lasonder E, Alano P, (2016) "Comparative proteomics and functional analysis reveal a role of P. falciparum osmiophilic bodies in malaria parasite transmission." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27432909 27432909]; doi: [https://dx.doi.org/10.1074/mcp.M116.060681 10.1074/mcp.M116.060681]; GPMDB: [http://gpmdb.org/data/keyword/27432909 162]. | ||
#Vandenbrouck Y, Lane L, Carapito C, Duek P, Rondel K, Bruley C, Macron C, Gonzalez de Peredo A, Couté Y, Chaoui K, Com E, Gateau A, Hesse AM, Marcellin M, Méar L, Mouton-Barbosa E, Robin T, Burlet-Schiltz O, Cianferani S, Ferro M, Fréour T, Lindskog C, Garin J, Pineau C, (2016) "Looking for Missing Proteins in the Proteome of Human Spermatozoa: An Update." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27444420 27444420]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00400 10.1021/acs.jproteome.6b00400]; GPMDB: [http://gpmdb.org/data/keyword/27444420 108]. | #Vandenbrouck Y, Lane L, Carapito C, Duek P, Rondel K, Bruley C, Macron C, Gonzalez de Peredo A, Couté Y, Chaoui K, Com E, Gateau A, Hesse AM, Marcellin M, Méar L, Mouton-Barbosa E, Robin T, Burlet-Schiltz O, Cianferani S, Ferro M, Fréour T, Lindskog C, Garin J, Pineau C, (2016) "Looking for Missing Proteins in the Proteome of Human Spermatozoa: An Update." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27444420 27444420]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00400 10.1021/acs.jproteome.6b00400]; GPMDB: [http://gpmdb.org/data/keyword/27444420 108]. | ||
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#Gautier EF, Ducamp S, Leduc M, Salnot V, Guillonneau F, Dussiot M, Hale J, Giarratana MC, Raimbault A, Douay L, Lacombe C, Mohandas N, Verdier F, Zermati Y, Mayeux P, (2016) "Comprehensive Proteomic Analysis of Human Erythropoiesis." <i>Cell Rep</i> <b>16</b>(5):1470–84; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27452463 27452463]; doi: [https://dx.doi.org/10.1016/j.celrep.2016.06.085 10.1016/j.celrep.2016.06.085]; GPMDB: [http://gpmdb.org/data/keyword/27452463 235]. | #Gautier EF, Ducamp S, Leduc M, Salnot V, Guillonneau F, Dussiot M, Hale J, Giarratana MC, Raimbault A, Douay L, Lacombe C, Mohandas N, Verdier F, Zermati Y, Mayeux P, (2016) "Comprehensive Proteomic Analysis of Human Erythropoiesis." <i>Cell Rep</i> <b>16</b>(5):1470–84; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27452463 27452463]; doi: [https://dx.doi.org/10.1016/j.celrep.2016.06.085 10.1016/j.celrep.2016.06.085]; GPMDB: [http://gpmdb.org/data/keyword/27452463 235]. | ||
#Liao Y, Castello A, Fischer B, Leicht S, Föehr S, Frese CK, Ragan C, Kurscheid S, Pagler E, Yang H, Krijgsveld J, Hentze MW, Preiss T, (2016) "The Cardiomyocyte RNA-Binding Proteome: Links to Intermediary Metabolism and Heart Disease." <i>Cell Rep</i> <b>16</b>(5):1456–69; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27452465 27452465]; doi: [https://dx.doi.org/10.1016/j.celrep.2016.06.084 10.1016/j.celrep.2016.06.084]; GPMDB: [http://gpmdb.org/data/keyword/27452465 7]. | #Liao Y, Castello A, Fischer B, Leicht S, Föehr S, Frese CK, Ragan C, Kurscheid S, Pagler E, Yang H, Krijgsveld J, Hentze MW, Preiss T, (2016) "The Cardiomyocyte RNA-Binding Proteome: Links to Intermediary Metabolism and Heart Disease." <i>Cell Rep</i> <b>16</b>(5):1456–69; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27452465 27452465]; doi: [https://dx.doi.org/10.1016/j.celrep.2016.06.084 10.1016/j.celrep.2016.06.084]; GPMDB: [http://gpmdb.org/data/keyword/27452465 7]. | ||
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#Osinalde N, Sanchez-Quiles V, Akimov V, Aloria K, Arizmendi JM, Blagoev B, Kratchmarova I, (2016) "Characterization of Receptor-Associated Protein Complex Assembly in Interleukin (IL)-2- and IL-15-Activated T-Cell Lines." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27463037 27463037]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00233 10.1021/acs.jproteome.6b00233]; GPMDB: [http://gpmdb.org/data/keyword/27463037 55]. | #Osinalde N, Sanchez-Quiles V, Akimov V, Aloria K, Arizmendi JM, Blagoev B, Kratchmarova I, (2016) "Characterization of Receptor-Associated Protein Complex Assembly in Interleukin (IL)-2- and IL-15-Activated T-Cell Lines." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27463037 27463037]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00233 10.1021/acs.jproteome.6b00233]; GPMDB: [http://gpmdb.org/data/keyword/27463037 55]. | ||
#Liu Z, Wang F, Chen J, Zhou Y, Zou H, (2016) "Modulating the selectivity of affinity absorbents to multi-phosphopeptides by a competitive substitution strategy." <i>J Chromatogr A</i> <b>1461</b>:35–41; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27470094 27470094]; doi: [https://dx.doi.org/10.1016/j.chroma.2016.07.042 10.1016/j.chroma.2016.07.042]; GPMDB: [http://gpmdb.org/data/keyword/27470094 9]. | #Liu Z, Wang F, Chen J, Zhou Y, Zou H, (2016) "Modulating the selectivity of affinity absorbents to multi-phosphopeptides by a competitive substitution strategy." <i>J Chromatogr A</i> <b>1461</b>:35–41; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27470094 27470094]; doi: [https://dx.doi.org/10.1016/j.chroma.2016.07.042 10.1016/j.chroma.2016.07.042]; GPMDB: [http://gpmdb.org/data/keyword/27470094 9]. | ||
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#Soderholm S, Kainov DE, Ohman T, Denisova OV, Schepens B, Kulesskiy E, Imanishi SY, Corthals G, Hintsanen P, Aittokallio T, Saelens X, Matikainen S, Nyman TA, (2016) "Phosphoproteomics to characterize host response during influenza A virus infection of human macrophages." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27486199 27486199]; doi: [https://dx.doi.org/10.1074/mcp.M116.057984 10.1074/mcp.M116.057984]; GPMDB: [http://gpmdb.org/data/keyword/27486199 20]. | #Soderholm S, Kainov DE, Ohman T, Denisova OV, Schepens B, Kulesskiy E, Imanishi SY, Corthals G, Hintsanen P, Aittokallio T, Saelens X, Matikainen S, Nyman TA, (2016) "Phosphoproteomics to characterize host response during influenza A virus infection of human macrophages." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27486199 27486199]; doi: [https://dx.doi.org/10.1074/mcp.M116.057984 10.1074/mcp.M116.057984]; GPMDB: [http://gpmdb.org/data/keyword/27486199 20]. | ||
#Deslyper G, Colgan TJ, Cooper AJ, Holland CV, Carolan JC, (2016) "A Proteomic Investigation of Hepatic Resistance to Ascaris in a Murine Model." <i>PLoS Negl Trop Dis</i> <b>10</b>(8):e0004837; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27490109 27490109]; doi: [https://dx.doi.org/10.1371/journal.pntd.0004837 10.1371/journal.pntd.0004837]; GPMDB: [http://gpmdb.org/data/keyword/27490109 12]. | #Deslyper G, Colgan TJ, Cooper AJ, Holland CV, Carolan JC, (2016) "A Proteomic Investigation of Hepatic Resistance to Ascaris in a Murine Model." <i>PLoS Negl Trop Dis</i> <b>10</b>(8):e0004837; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27490109 27490109]; doi: [https://dx.doi.org/10.1371/journal.pntd.0004837 10.1371/journal.pntd.0004837]; GPMDB: [http://gpmdb.org/data/keyword/27490109 12]. | ||
+ | #Peltier J, Roperch JP, Audebert S, Borg JP, Camoin L, (2016) "Quantitative proteomic analysis exploring progression of colorectal cancer: Modulation of the serpin family." <i>J Proteomics</i> <b>148</b>:139–148; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27492143 27492143]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.07.031 10.1016/j.jprot.2016.07.031]; GPMDB: [http://gpmdb.org/data/keyword/27492143 2]. | ||
#Roberts AJ, Fairlamb AH, (2016) "The N-myristoylome of Trypanosoma cruzi." <i>Sci Rep</i> <b>6</b>:31078; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27492267 27492267]; doi: [https://dx.doi.org/10.1038/srep31078 10.1038/srep31078]; GPMDB: [http://gpmdb.org/data/keyword/27492267 12]. | #Roberts AJ, Fairlamb AH, (2016) "The N-myristoylome of Trypanosoma cruzi." <i>Sci Rep</i> <b>6</b>:31078; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27492267 27492267]; doi: [https://dx.doi.org/10.1038/srep31078 10.1038/srep31078]; GPMDB: [http://gpmdb.org/data/keyword/27492267 12]. | ||
- | #Dubois ML, Bastin C, Lévesque D, Boisvert FM, (2016) "Comprehensive Characterization of Minichromosome Maintenance Complex (MCM) Protein Interactions Using Affinity and Proximity Purifications Coupled to Mass Spectrometry." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27494197 27494197]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b01081 10.1021/acs.jproteome.5b01081]; GPMDB: [http://gpmdb.org/data/keyword/27494197 109]. | + | #Dubois ML, Bastin C, Lévesque D, Boisvert FM, (2016) "Comprehensive Characterization of Minichromosome Maintenance Complex (MCM) Protein Interactions Using Affinity and Proximity Purifications Coupled to Mass Spectrometry." <i>J Proteome Res</i> <b>15</b>(9):2924–34; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27494197 27494197]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b01081 10.1021/acs.jproteome.5b01081]; GPMDB: [http://gpmdb.org/data/keyword/27494197 109]. |
#Lachén-Montes M, González-Morales A, de Morentin XM, Pérez-Valderrama E, Ausín K, Zelaya MV, Serna A, Aso E, Ferrer I, Fernández-Irigoyen J, Santamaría E, (2016) "An early dysregulation of FAK and MEK/ERK signaling pathways precedes the β-amyloid deposition in the olfactory bulb of APP/PS1 mouse model of Alzheimer's disease." <i>J Proteomics</i> <b>148</b>:149–158; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27498392 27498392]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.07.032 10.1016/j.jprot.2016.07.032]; GPMDB: [http://gpmdb.org/data/keyword/27498392 20]. | #Lachén-Montes M, González-Morales A, de Morentin XM, Pérez-Valderrama E, Ausín K, Zelaya MV, Serna A, Aso E, Ferrer I, Fernández-Irigoyen J, Santamaría E, (2016) "An early dysregulation of FAK and MEK/ERK signaling pathways precedes the β-amyloid deposition in the olfactory bulb of APP/PS1 mouse model of Alzheimer's disease." <i>J Proteomics</i> <b>148</b>:149–158; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27498392 27498392]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.07.032 10.1016/j.jprot.2016.07.032]; GPMDB: [http://gpmdb.org/data/keyword/27498392 20]. | ||
#Drake JM, Paull EO, Graham NA, Lee JK, Smith BA, Titz B, Stoyanova T, Faltermeier CM, Uzunangelov V, Carlin DE, Fleming DT, Wong CK, Newton Y, Sudha S, Vashisht AA, Huang J, Wohlschlegel JA, Graeber TG, Witte ON, Stuart JM, (2016) "Phosphoproteome Integration Reveals Patient-Specific Networks in Prostate Cancer." <i>Cell</i> <b>166</b>(4):1041–54; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27499020 27499020]; doi: [https://dx.doi.org/10.1016/j.cell.2016.07.007 10.1016/j.cell.2016.07.007]; GPMDB: [http://gpmdb.org/data/keyword/27499020 69]. | #Drake JM, Paull EO, Graham NA, Lee JK, Smith BA, Titz B, Stoyanova T, Faltermeier CM, Uzunangelov V, Carlin DE, Fleming DT, Wong CK, Newton Y, Sudha S, Vashisht AA, Huang J, Wohlschlegel JA, Graeber TG, Witte ON, Stuart JM, (2016) "Phosphoproteome Integration Reveals Patient-Specific Networks in Prostate Cancer." <i>Cell</i> <b>166</b>(4):1041–54; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27499020 27499020]; doi: [https://dx.doi.org/10.1016/j.cell.2016.07.007 10.1016/j.cell.2016.07.007]; GPMDB: [http://gpmdb.org/data/keyword/27499020 69]. | ||
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#Liu L, Phua YW, Lee RS, Ma X, Jenkins Y, Novy K, Humphrey ES, Chan H, Shearer R, Ong PC, Dai W, Saunders DN, Lucet IS, Daly RJ, (2016) "Homo- and Heterotypic Association Regulates Signalling by the SgK269/PEAK1 and SgK223 Pseudokinases." <i>J Biol Chem</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27531744 27531744]; doi: [https://dx.doi.org/10.1074/jbc.M116.748897 10.1074/jbc.M116.748897]; GPMDB: [http://gpmdb.org/data/keyword/27531744 6]. | #Liu L, Phua YW, Lee RS, Ma X, Jenkins Y, Novy K, Humphrey ES, Chan H, Shearer R, Ong PC, Dai W, Saunders DN, Lucet IS, Daly RJ, (2016) "Homo- and Heterotypic Association Regulates Signalling by the SgK269/PEAK1 and SgK223 Pseudokinases." <i>J Biol Chem</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27531744 27531744]; doi: [https://dx.doi.org/10.1074/jbc.M116.748897 10.1074/jbc.M116.748897]; GPMDB: [http://gpmdb.org/data/keyword/27531744 6]. | ||
#Mattei B, Spinelli F, Pontiggia D, De Lorenzo G, (2016) "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana." <i>Front Plant Sci</i> <b>7</b>:1107; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27532006 27532006]; doi: [https://dx.doi.org/10.3389/fpls.2016.01107 10.3389/fpls.2016.01107]; GPMDB: [http://gpmdb.org/data/keyword/27532006 12]. | #Mattei B, Spinelli F, Pontiggia D, De Lorenzo G, (2016) "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana." <i>Front Plant Sci</i> <b>7</b>:1107; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27532006 27532006]; doi: [https://dx.doi.org/10.3389/fpls.2016.01107 10.3389/fpls.2016.01107]; GPMDB: [http://gpmdb.org/data/keyword/27532006 12]. | ||
+ | #Solari FA, Mattheij NJ, Burkhart JM, Swieringa F, Collins PW, Cosemans JM, Sickmann A, Heemskerk JW, Zahedi RP, (2016) "Combined quantification of the global proteome, phosphoproteome and proteolytic cleavage to characterize altered platelet functions in the human Scott syndrome." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27535140 27535140]; doi: [https://dx.doi.org/10.1074/mcp.M116.060368 10.1074/mcp.M116.060368]; GPMDB: [http://gpmdb.org/data/keyword/27535140 23]. | ||
#Dobó J, Szakács D, Oroszlán G, Kortvely E, Kiss B, Boros E, Szász R, Závodszky P, Gál P, Pál G, (2016) "MASP-3 is the exclusive pro-factor D activator in resting blood: the lectin and the alternative complement pathways are fundamentally linked." <i>Sci Rep</i> <b>6</b>:31877; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27535802 27535802]; doi: [https://dx.doi.org/10.1038/srep31877 10.1038/srep31877]; GPMDB: [http://gpmdb.org/data/keyword/27535802 6]. | #Dobó J, Szakács D, Oroszlán G, Kortvely E, Kiss B, Boros E, Szász R, Závodszky P, Gál P, Pál G, (2016) "MASP-3 is the exclusive pro-factor D activator in resting blood: the lectin and the alternative complement pathways are fundamentally linked." <i>Sci Rep</i> <b>6</b>:31877; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27535802 27535802]; doi: [https://dx.doi.org/10.1038/srep31877 10.1038/srep31877]; GPMDB: [http://gpmdb.org/data/keyword/27535802 6]. | ||
+ | #Zhang P, Karani R, Turner RL, Dufresne C, Ferri S, Van Eyk JE, Semba RD, (2016) "The proteome of normal human retrobulbar optic nerve and sclera." <i>Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27538499 27538499]; doi: [https://dx.doi.org/10.1002/pmic.201600229 10.1002/pmic.201600229]; GPMDB: [http://gpmdb.org/data/keyword/27538499 60]. |
GPMDB was originally constructed to serve as a reference work for all publicly available proteomics generated using tandem mass spectrometry. Public data is downloaded and reanalyzed using the current version of X! Tandem. The result files generated by the reanalysis and the relevant metadata are imported into the database and made available through the associated web site, ftp site and REST interfaces.
Contents |
The following public data repositories are checked daily for new suitable raw data for reanalysis:
Data made available from specific large projects, such as CPTAC or the Human Proteome Atlas, are also included when they are made available. Every effort is made so that reanalyzed results from all data sources are made available within 48 hours of their being released. In addition, data from lab web sites, ftp sites and direct contributions through the GPM sites made available to researchers are imported into GPMDB as part of a daily incremental update process.
GPMDB has been in operation since Jan. 1, 2004. Several large data source repositories have come into existence and ceased activity in the period since that time. All of the data from those repositories (e.g., TRANCHE, Peptidome) were reanalyzed and stored in GPMDB and they are still available even though the source repository sites are no longer active.
Simply because data is made available does not mean that it will be included in GPMDB. The data must pass our internal automated quality control tests for its initial acceptance and it may be rejected subsequently because of either quality or originality concerns.
The following is a list of data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list (1,238 publications) was current, as of September 4, 2016.