GPMDB Data Sources

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==Data from publications==
==Data from publications==
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The following is a list of data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list was current, as of January 22, 2018.
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The following is a list of data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list was current, as of November 3, 2019.
#Lipton MS, Pasa-Tolic&#39; L, Anderson GA, Anderson DJ, Auberry DL, Battista JR, Daly MJ, Fredrickson J, Hixson KK, Kostandarithes H, Masselon C, Markillie LM, Moore RJ, Romine MF, Shen Y, Stritmatter E, Tolic&#39; N, Udseth HR, Venkateswaran A, Wong KK, Zhao R, Smith RD,  (2002) &quot;Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags.&quot; <i>Proc Natl Acad Sci U S A</i> <b>99</b>(17):11049&ndash;54; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/12177431 12177431]; doi: [https://dx.doi.org/10.1073/pnas.172170199 10.1073/pnas.172170199]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/12177431 498].
#Lipton MS, Pasa-Tolic&#39; L, Anderson GA, Anderson DJ, Auberry DL, Battista JR, Daly MJ, Fredrickson J, Hixson KK, Kostandarithes H, Masselon C, Markillie LM, Moore RJ, Romine MF, Shen Y, Stritmatter E, Tolic&#39; N, Udseth HR, Venkateswaran A, Wong KK, Zhao R, Smith RD,  (2002) &quot;Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags.&quot; <i>Proc Natl Acad Sci U S A</i> <b>99</b>(17):11049&ndash;54; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/12177431 12177431]; doi: [https://dx.doi.org/10.1073/pnas.172170199 10.1073/pnas.172170199]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/12177431 498].
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#Bland C, Bellanger L, Armengaud J,  (2014) &quot;Magnetic immunoaffinity enrichment for selective capture and MS/MS analysis of N-terminal-TMPP-labeled peptides.&quot; <i>J Proteome Res</i> <b>13</b>(2):668&ndash;80; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24313271 24313271]; doi: [https://dx.doi.org/10.1021/pr400774z 10.1021/pr400774z]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24313271 9].
#Bland C, Bellanger L, Armengaud J,  (2014) &quot;Magnetic immunoaffinity enrichment for selective capture and MS/MS analysis of N-terminal-TMPP-labeled peptides.&quot; <i>J Proteome Res</i> <b>13</b>(2):668&ndash;80; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24313271 24313271]; doi: [https://dx.doi.org/10.1021/pr400774z 10.1021/pr400774z]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24313271 9].
#Tsai CF, Hsu CC, Hung JN, Wang YT, Choong WK, Zeng MY, Lin PY, Hong RW, Sung TY, Chen YJ,  (2014) &quot;Sequential phosphoproteomic enrichment through complementary metal-directed immobilized metal ion affinity chromatography.&quot; <i>Anal Chem</i> <b>86</b>(1):685&ndash;93; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24313913 24313913]; doi: [https://dx.doi.org/10.1021/ac4031175 10.1021/ac4031175]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24313913 27].
#Tsai CF, Hsu CC, Hung JN, Wang YT, Choong WK, Zeng MY, Lin PY, Hong RW, Sung TY, Chen YJ,  (2014) &quot;Sequential phosphoproteomic enrichment through complementary metal-directed immobilized metal ion affinity chromatography.&quot; <i>Anal Chem</i> <b>86</b>(1):685&ndash;93; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24313913 24313913]; doi: [https://dx.doi.org/10.1021/ac4031175 10.1021/ac4031175]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24313913 27].
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#Kennedy JJ, Abbatiello SE, Kim K, Yan P, Whiteaker JR, Lin C, Kim JS, Zhang Y, Wang X, Ivey RG, Zhao L, Min H, Lee Y, Yu MH, Yang EG, Lee C, Wang P, Rodriguez H, Kim Y, Carr SA, Paulovich AG,  (2014) &quot;Demonstrating the feasibility of large-scale development of standardized assays to quantify human proteins.&quot; <i>Nat Methods</i> <b>11</b>(2):149&ndash;55; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24317253 24317253]; doi: [https://dx.doi.org/10.1038/nmeth.2763 10.1038/nmeth.2763]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24317253 221].
#Kao L, Wang YT, Chen YC, Tseng SF, Jhang JC, Chen YJ, Teng SC,  (2014) &quot;Global analysis of cdc14 dephosphorylation sites reveals essential regulatory role in mitosis and cytokinesis.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(2):594&ndash;605; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24319056 24319056]; doi: [https://dx.doi.org/10.1074/mcp.M113.032680 10.1074/mcp.M113.032680]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24319056 9].
#Kao L, Wang YT, Chen YC, Tseng SF, Jhang JC, Chen YJ, Teng SC,  (2014) &quot;Global analysis of cdc14 dephosphorylation sites reveals essential regulatory role in mitosis and cytokinesis.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(2):594&ndash;605; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24319056 24319056]; doi: [https://dx.doi.org/10.1074/mcp.M113.032680 10.1074/mcp.M113.032680]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24319056 9].
#Beck F, Geiger J, Gambaryan S, Veit J, Vaudel M, Nollau P, Kohlbacher O, Martens L, Walter U, Sickmann A, Zahedi RP,  (2014) &quot;Time-resolved characterization of cAMP/PKA-dependent signaling reveals that platelet inhibition is a concerted process involving multiple signaling pathways.&quot; <i>Blood</i> <b>123</b>(5):e1&ndash;e10; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24324209 24324209]; doi: [https://dx.doi.org/10.1182/blood-2013-07-512384 10.1182/blood-2013-07-512384]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24324209 19].
#Beck F, Geiger J, Gambaryan S, Veit J, Vaudel M, Nollau P, Kohlbacher O, Martens L, Walter U, Sickmann A, Zahedi RP,  (2014) &quot;Time-resolved characterization of cAMP/PKA-dependent signaling reveals that platelet inhibition is a concerted process involving multiple signaling pathways.&quot; <i>Blood</i> <b>123</b>(5):e1&ndash;e10; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24324209 24324209]; doi: [https://dx.doi.org/10.1182/blood-2013-07-512384 10.1182/blood-2013-07-512384]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24324209 19].
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#Han D, Jin J, Woo J, Min H, Kim Y,  (2014) &quot;Proteomic analysis of mouse astrocytes and their secretome by a combination of FASP and StageTip-based, high pH, reversed-phase fractionation.&quot; <i>Proteomics</i> <b>14</b>(13-14):1604&ndash;9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24753479 24753479]; doi: [https://dx.doi.org/10.1002/pmic.201300495 10.1002/pmic.201300495]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24753479 107].
#Han D, Jin J, Woo J, Min H, Kim Y,  (2014) &quot;Proteomic analysis of mouse astrocytes and their secretome by a combination of FASP and StageTip-based, high pH, reversed-phase fractionation.&quot; <i>Proteomics</i> <b>14</b>(13-14):1604&ndash;9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24753479 24753479]; doi: [https://dx.doi.org/10.1002/pmic.201300495 10.1002/pmic.201300495]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24753479 107].
#Chiasserini D, van Weering JR, Piersma SR, Pham TV, Malekzadeh A, Teunissen CE, de Wit H, Jim&eacute;nez CR,  (2014) &quot;Proteomic analysis of cerebrospinal fluid extracellular vesicles: a comprehensive dataset.&quot; <i>J Proteomics</i> <b>106</b>:191&ndash;204; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24769233 24769233]; doi: [https://dx.doi.org/10.1016/j.jprot.2014.04.028 10.1016/j.jprot.2014.04.028]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24769233 36].
#Chiasserini D, van Weering JR, Piersma SR, Pham TV, Malekzadeh A, Teunissen CE, de Wit H, Jim&eacute;nez CR,  (2014) &quot;Proteomic analysis of cerebrospinal fluid extracellular vesicles: a comprehensive dataset.&quot; <i>J Proteomics</i> <b>106</b>:191&ndash;204; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24769233 24769233]; doi: [https://dx.doi.org/10.1016/j.jprot.2014.04.028 10.1016/j.jprot.2014.04.028]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24769233 36].
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#Renvois&eacute; M, Bonhomme L, Davanture M, Valot B, Zivy M, Lemaire C,  (2014) &quot;Quantitative variations of the mitochondrial proteome and phosphoproteome during fermentative and respiratory growth in Saccharomyces cerevisiae.&quot; <i>J Proteomics</i> <b>106</b>:140&ndash;50; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24769239 24769239]; doi: [https://dx.doi.org/10.1016/j.jprot.2014.04.022 10.1016/j.jprot.2014.04.022]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24769239 48].
#Eravci M, Sommer C, Selbach M,  (2014) &quot;IPG strip-based peptide fractionation for shotgun proteomics.&quot; <i>Methods Mol Biol</i> <b>1156</b>:67&ndash;77; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24791982 24791982]; doi: [https://dx.doi.org/10.1007/978-1-4939-0685-7_5 10.1007/978-1-4939-0685-7_5]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24791982 41].
#Eravci M, Sommer C, Selbach M,  (2014) &quot;IPG strip-based peptide fractionation for shotgun proteomics.&quot; <i>Methods Mol Biol</i> <b>1156</b>:67&ndash;77; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24791982 24791982]; doi: [https://dx.doi.org/10.1007/978-1-4939-0685-7_5 10.1007/978-1-4939-0685-7_5]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24791982 41].
#G&uuml;ther ML, Urbaniak MD, Tavendale A, Prescott A, Ferguson MA,  (2014) &quot;High-confidence glycosome proteome for procyclic form Trypanosoma brucei by epitope-tag organelle enrichment and SILAC proteomics.&quot; <i>J Proteome Res</i> <b>13</b>(6):2796&ndash;806; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24792668 24792668]; doi: [https://dx.doi.org/10.1021/pr401209w 10.1021/pr401209w]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24792668 154].
#G&uuml;ther ML, Urbaniak MD, Tavendale A, Prescott A, Ferguson MA,  (2014) &quot;High-confidence glycosome proteome for procyclic form Trypanosoma brucei by epitope-tag organelle enrichment and SILAC proteomics.&quot; <i>J Proteome Res</i> <b>13</b>(6):2796&ndash;806; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24792668 24792668]; doi: [https://dx.doi.org/10.1021/pr401209w 10.1021/pr401209w]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24792668 154].
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#Yang W, Ramachandran A, You S, Jeong H, Morley S, Mulone MD, Logvinenko T, Kim J, Hwang D, Freeman MR, Adam RM,  (2014) &quot;Integration of proteomic and transcriptomic profiles identifies a novel PDGF-MYC network in human smooth muscle cells.&quot; <i>Cell Commun Signal</i> <b>12</b>:44; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25080971 25080971]; doi: [https://dx.doi.org/10.1186/s12964-014-0044-z 10.1186/s12964-014-0044-z]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25080971 30].
#Yang W, Ramachandran A, You S, Jeong H, Morley S, Mulone MD, Logvinenko T, Kim J, Hwang D, Freeman MR, Adam RM,  (2014) &quot;Integration of proteomic and transcriptomic profiles identifies a novel PDGF-MYC network in human smooth muscle cells.&quot; <i>Cell Commun Signal</i> <b>12</b>:44; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25080971 25080971]; doi: [https://dx.doi.org/10.1186/s12964-014-0044-z 10.1186/s12964-014-0044-z]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25080971 30].
#Labas V, Grasseau I, Cahier K, Gargaros A, Harichaux G, Teixeira-Gomes AP, Alves S, Bourin M, G&eacute;rard N, Blesbois E,  (2015) &quot;Qualitative and quantitative peptidomic and proteomic approaches to phenotyping chicken semen.&quot; <i>J Proteomics</i> <b>112</b>:313&ndash;35; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25086240 25086240]; doi: [https://dx.doi.org/10.1016/j.jprot.2014.07.024 10.1016/j.jprot.2014.07.024]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25086240 44].
#Labas V, Grasseau I, Cahier K, Gargaros A, Harichaux G, Teixeira-Gomes AP, Alves S, Bourin M, G&eacute;rard N, Blesbois E,  (2015) &quot;Qualitative and quantitative peptidomic and proteomic approaches to phenotyping chicken semen.&quot; <i>J Proteomics</i> <b>112</b>:313&ndash;35; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25086240 25086240]; doi: [https://dx.doi.org/10.1016/j.jprot.2014.07.024 10.1016/j.jprot.2014.07.024]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25086240 44].
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#Berlin C, Kowalewski DJ, Schuster H, Mirza N, Walz S, Handel M, Schmid-Horch B, Salih HR, Kanz L, Rammensee HG, Stevanovi&#x107; S, Stickel JS,  (2015) &quot;Mapping the HLA ligandome landscape of acute myeloid leukemia: a targeted approach toward peptide-based immunotherapy.&quot; <i>Leukemia</i> <b>29</b>(3):647&ndash;59; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25092142 25092142]; doi: [https://dx.doi.org/10.1038/leu.2014.233 10.1038/leu.2014.233]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25092142 73].
#Alqahtani A, Heesom K, Bramson JL, Curiel D, Ugai H, Matthews DA,  (2014) &quot;Analysis of purified wild type and mutant adenovirus particles by SILAC based quantitative proteomics.&quot; <i>J Gen Virol</i> <b>95</b>(Pt 11):2504&ndash;11; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25096814 25096814]; doi: [https://dx.doi.org/10.1099/vir.0.068221-0 10.1099/vir.0.068221-0]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25096814 22].
#Alqahtani A, Heesom K, Bramson JL, Curiel D, Ugai H, Matthews DA,  (2014) &quot;Analysis of purified wild type and mutant adenovirus particles by SILAC based quantitative proteomics.&quot; <i>J Gen Virol</i> <b>95</b>(Pt 11):2504&ndash;11; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25096814 25096814]; doi: [https://dx.doi.org/10.1099/vir.0.068221-0 10.1099/vir.0.068221-0]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25096814 22].
#Jin L, Huo Y, Zheng Z, Jiang X, Deng H, Chen Y, Lian Q, Ge R, Deng H,  (2014) &quot;Down-regulation of Ras-related protein Rab 5C-dependent endocytosis and glycolysis in cisplatin-resistant ovarian cancer cell lines.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(11):3138&ndash;51; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25096996 25096996]; doi: [https://dx.doi.org/10.1074/mcp.M113.033217 10.1074/mcp.M113.033217]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25096996 11].
#Jin L, Huo Y, Zheng Z, Jiang X, Deng H, Chen Y, Lian Q, Ge R, Deng H,  (2014) &quot;Down-regulation of Ras-related protein Rab 5C-dependent endocytosis and glycolysis in cisplatin-resistant ovarian cancer cell lines.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(11):3138&ndash;51; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25096996 25096996]; doi: [https://dx.doi.org/10.1074/mcp.M113.033217 10.1074/mcp.M113.033217]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25096996 11].
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#Welinder C, Paw&#x142;owski K, Sugihara Y, Yakovleva M, J&ouml;nsson G, Ingvar C, Lundgren L, Baldetorp B, Olsson H, Rezeli M, Jansson B, Laurell T, Fehniger T, D&ouml;me B, Malm J, Wieslander E, Nishimura T, Marko-Varga G,  (2015) &quot;A protein deep sequencing evaluation of metastatic melanoma tissues.&quot; <i>PLoS One</i> <b>10</b>(4):e0123661; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25874936 25874936]; doi: [https://dx.doi.org/10.1371/journal.pone.0123661 10.1371/journal.pone.0123661]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25874936 11].
#Welinder C, Paw&#x142;owski K, Sugihara Y, Yakovleva M, J&ouml;nsson G, Ingvar C, Lundgren L, Baldetorp B, Olsson H, Rezeli M, Jansson B, Laurell T, Fehniger T, D&ouml;me B, Malm J, Wieslander E, Nishimura T, Marko-Varga G,  (2015) &quot;A protein deep sequencing evaluation of metastatic melanoma tissues.&quot; <i>PLoS One</i> <b>10</b>(4):e0123661; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25874936 25874936]; doi: [https://dx.doi.org/10.1371/journal.pone.0123661 10.1371/journal.pone.0123661]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25874936 11].
#Hosp F, Scheltema RA, Eberl HC, Kulak NA, Keilhauer EC, Mayr K, Mann M,  (2015) &quot;A Double-Barrel Liquid Chromatography-Tandem Mass Spectrometry (LC-MS/MS) System to Quantify 96 Interactomes per Day.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(7):2030&ndash;41; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25887394 25887394]; doi: [https://dx.doi.org/10.1074/mcp.O115.049460 10.1074/mcp.O115.049460]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25887394 234].
#Hosp F, Scheltema RA, Eberl HC, Kulak NA, Keilhauer EC, Mayr K, Mann M,  (2015) &quot;A Double-Barrel Liquid Chromatography-Tandem Mass Spectrometry (LC-MS/MS) System to Quantify 96 Interactomes per Day.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(7):2030&ndash;41; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25887394 25887394]; doi: [https://dx.doi.org/10.1074/mcp.O115.049460 10.1074/mcp.O115.049460]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25887394 234].
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#Yu Y, Sikorski P, Bowman-Gholston C, Cacciabeve N, Nelson KE, Pieper R,  (2015) &quot;Diagnosing inflammation and infection in the urinary system via proteomics.&quot; <i>J Transl Med</i> <b>13</b>:111; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25889401 25889401]; doi: [https://dx.doi.org/10.1186/s12967-015-0475-3 10.1186/s12967-015-0475-3]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25889401 260].
#Xu R, Greening DW, Rai A, Ji H, Simpson RJ,  (2015) &quot;Highly-purified exosomes and shed microvesicles isolated from the human colon cancer cell line LIM1863 by sequential centrifugal ultrafiltration are biochemically and functionally distinct.&quot; <i>Methods</i> <b>87</b>:11&ndash;25; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25890246 25890246]; doi: [https://dx.doi.org/10.1016/j.ymeth.2015.04.008 10.1016/j.ymeth.2015.04.008]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25890246 4].
#Xu R, Greening DW, Rai A, Ji H, Simpson RJ,  (2015) &quot;Highly-purified exosomes and shed microvesicles isolated from the human colon cancer cell line LIM1863 by sequential centrifugal ultrafiltration are biochemically and functionally distinct.&quot; <i>Methods</i> <b>87</b>:11&ndash;25; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25890246 25890246]; doi: [https://dx.doi.org/10.1016/j.ymeth.2015.04.008 10.1016/j.ymeth.2015.04.008]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25890246 4].
#van der Mijn JC, Labots M, Piersma SR, Pham TV, Knol JC, Broxterman HJ, Verheul HM, Jim&eacute;nez CR,  (2015) &quot;Evaluation of different phospho-tyrosine antibodies for label-free phosphoproteomics.&quot; <i>J Proteomics</i> <b>127</b>(Pt B):259&ndash;63; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25890253 25890253]; doi: [https://dx.doi.org/10.1016/j.jprot.2015.04.006 10.1016/j.jprot.2015.04.006]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25890253 10].
#van der Mijn JC, Labots M, Piersma SR, Pham TV, Knol JC, Broxterman HJ, Verheul HM, Jim&eacute;nez CR,  (2015) &quot;Evaluation of different phospho-tyrosine antibodies for label-free phosphoproteomics.&quot; <i>J Proteomics</i> <b>127</b>(Pt B):259&ndash;63; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25890253 25890253]; doi: [https://dx.doi.org/10.1016/j.jprot.2015.04.006 10.1016/j.jprot.2015.04.006]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25890253 10].
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#Liu L, Phua YW, Lee RS, Ma X, Jenkins Y, Novy K, Humphrey ES, Chan H, Shearer R, Ong PC, Dai W, Saunders DN, Lucet IS, Daly RJ,  (2016) &quot;Homo- and Heterotypic Association Regulates Signaling by the SgK269/PEAK1 and SgK223 Pseudokinases.&quot; <i>J Biol Chem</i> <b>291</b>(41):21571&ndash;21583; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27531744 27531744]; doi: [https://dx.doi.org/10.1074/jbc.M116.748897 10.1074/jbc.M116.748897]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27531744 6].
#Liu L, Phua YW, Lee RS, Ma X, Jenkins Y, Novy K, Humphrey ES, Chan H, Shearer R, Ong PC, Dai W, Saunders DN, Lucet IS, Daly RJ,  (2016) &quot;Homo- and Heterotypic Association Regulates Signaling by the SgK269/PEAK1 and SgK223 Pseudokinases.&quot; <i>J Biol Chem</i> <b>291</b>(41):21571&ndash;21583; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27531744 27531744]; doi: [https://dx.doi.org/10.1074/jbc.M116.748897 10.1074/jbc.M116.748897]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27531744 6].
#Mattei B, Spinelli F, Pontiggia D, De Lorenzo G,  (2016) &quot;Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.&quot; <i>Front Plant Sci</i> <b>7</b>:1107; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27532006 27532006]; doi: [https://dx.doi.org/10.3389/fpls.2016.01107 10.3389/fpls.2016.01107]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27532006 12].
#Mattei B, Spinelli F, Pontiggia D, De Lorenzo G,  (2016) &quot;Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.&quot; <i>Front Plant Sci</i> <b>7</b>:1107; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27532006 27532006]; doi: [https://dx.doi.org/10.3389/fpls.2016.01107 10.3389/fpls.2016.01107]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27532006 12].
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#Zacharias LG, Hartmann AK, Song E, Zhao J, Zhu R, Mirzaei P, Mechref Y,  (2016) &quot;HILIC and ERLIC Enrichment of Glycopeptides Derived from Breast and Brain Cancer Cells.&quot; <i>J Proteome Res</i> <b>15</b>(10):3624&ndash;3634; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27533485 27533485]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00429 10.1021/acs.jproteome.6b00429]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27533485 36].
#Solari FA, Mattheij NJ, Burkhart JM, Swieringa F, Collins PW, Cosemans JM, Sickmann A, Heemskerk JW, Zahedi RP,  (2016) &quot;Combined Quantification of the Global Proteome, Phosphoproteome, and Proteolytic Cleavage to Characterize Altered Platelet Functions in the Human Scott Syndrome.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(10):3154&ndash;3169; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27535140 27535140]; doi: [https://dx.doi.org/10.1074/mcp.M116.060368 10.1074/mcp.M116.060368]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27535140 23].
#Solari FA, Mattheij NJ, Burkhart JM, Swieringa F, Collins PW, Cosemans JM, Sickmann A, Heemskerk JW, Zahedi RP,  (2016) &quot;Combined Quantification of the Global Proteome, Phosphoproteome, and Proteolytic Cleavage to Characterize Altered Platelet Functions in the Human Scott Syndrome.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(10):3154&ndash;3169; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27535140 27535140]; doi: [https://dx.doi.org/10.1074/mcp.M116.060368 10.1074/mcp.M116.060368]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27535140 23].
#Wei W, Luo W, Wu F, Peng X, Zhang Y, Zhang M, Zhao Y, Su N, Qi Y, Chen L, Zhang Y, Wen B, He F, Xu P,  (2016) &quot;Deep Coverage Proteomics Identifies More Low-Abundance Missing Proteins in Human Testis Tissue with Q-Exactive HF Mass Spectrometer.&quot; <i>J Proteome Res</i> <b>15</b>(11):3988&ndash;3997; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27535590 27535590]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00390 10.1021/acs.jproteome.6b00390]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27535590 150].
#Wei W, Luo W, Wu F, Peng X, Zhang Y, Zhang M, Zhao Y, Su N, Qi Y, Chen L, Zhang Y, Wen B, He F, Xu P,  (2016) &quot;Deep Coverage Proteomics Identifies More Low-Abundance Missing Proteins in Human Testis Tissue with Q-Exactive HF Mass Spectrometer.&quot; <i>J Proteome Res</i> <b>15</b>(11):3988&ndash;3997; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27535590 27535590]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00390 10.1021/acs.jproteome.6b00390]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27535590 150].
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#He PH, Dong WX, Chu XL, Feng MG, Ying SH,  (2016) &quot;The cellular proteome is affected by a gelsolin (BbGEL1) during morphological transitions in aerobic surface versus liquid growth in the entomopathogenic fungus Beauveria bassiana.&quot; <i>Environ Microbiol</i> <b>18</b>(11):4153&ndash;4169; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27554994 27554994]; doi: [https://dx.doi.org/10.1111/1462-2920.13500 10.1111/1462-2920.13500]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27554994 34].
#He PH, Dong WX, Chu XL, Feng MG, Ying SH,  (2016) &quot;The cellular proteome is affected by a gelsolin (BbGEL1) during morphological transitions in aerobic surface versus liquid growth in the entomopathogenic fungus Beauveria bassiana.&quot; <i>Environ Microbiol</i> <b>18</b>(11):4153&ndash;4169; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27554994 27554994]; doi: [https://dx.doi.org/10.1111/1462-2920.13500 10.1111/1462-2920.13500]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27554994 34].
#Viktorovskaya OV, Greco TM, Cristea IM, Thompson SR,  (2016) &quot;Identification of RNA Binding Proteins Associated with Dengue Virus RNA in Infected Cells Reveals Temporally Distinct Host Factor Requirements.&quot; <i>PLoS Negl Trop Dis</i> <b>10</b>(8):e0004921; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27556644 27556644]; doi: [https://dx.doi.org/10.1371/journal.pntd.0004921 10.1371/journal.pntd.0004921]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27556644 7].
#Viktorovskaya OV, Greco TM, Cristea IM, Thompson SR,  (2016) &quot;Identification of RNA Binding Proteins Associated with Dengue Virus RNA in Infected Cells Reveals Temporally Distinct Host Factor Requirements.&quot; <i>PLoS Negl Trop Dis</i> <b>10</b>(8):e0004921; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27556644 27556644]; doi: [https://dx.doi.org/10.1371/journal.pntd.0004921 10.1371/journal.pntd.0004921]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27556644 7].
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#Cassidy L, Prasse D, Linke D, Schmitz RA, Tholey A,  (2016) &quot;Combination of Bottom-up 2D-LC-MS and Semi-top-down GelFree-LC-MS Enhances Coverage of Proteome and Low Molecular Weight Short Open Reading Frame Encoded Peptides of the Archaeon Methanosarcina mazei.&quot; <i>J Proteome Res</i> <b>15</b>(10):3773&ndash;3783; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27557128 27557128]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00569 10.1021/acs.jproteome.6b00569]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27557128 6].
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#Cassidy L, Prasse D, Linke D, Schmitz RA, Tholey A,  (2016) &quot;Combination of Bottom-up 2D-LC-MS and Semi-top-down GelFree-LC-MS Enhances Coverage of Proteome and Low Molecular Weight Short Open Reading Frame Encoded Peptides of the Archaeon Methanosarcina mazei.&quot; <i>J Proteome Res</i> <b>15</b>(10):3773&ndash;3783; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27557128 27557128]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00569 10.1021/acs.jproteome.6b00569]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27557128 12].
#H&auml;upl B, Ihling CH, Sinz A,  (2016) &quot;Protein Interaction Network of Human Protein Kinase D2 Revealed by Chemical Cross-Linking/Mass Spectrometry.&quot; <i>J Proteome Res</i> <b>15</b>(10):3686&ndash;3699; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27559607 27559607]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00513 10.1021/acs.jproteome.6b00513]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27559607 81].
#H&auml;upl B, Ihling CH, Sinz A,  (2016) &quot;Protein Interaction Network of Human Protein Kinase D2 Revealed by Chemical Cross-Linking/Mass Spectrometry.&quot; <i>J Proteome Res</i> <b>15</b>(10):3686&ndash;3699; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27559607 27559607]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00513 10.1021/acs.jproteome.6b00513]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27559607 81].
#Jiang Y, Lee J, Lee JH, Lee JW, Kim JH, Choi WH, Yoo YD, Cha-Molstad H, Kim BY, Kwon YT, Noh SA, Kim KP, Lee MJ,  (2016) &quot;The arginylation branch of the N-end rule pathway positively regulates cellular autophagic flux and clearance of proteotoxic proteins.&quot; <i>Autophagy</i> <b>12</b>(11):2197&ndash;2212; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27560450 27560450]; doi: [https://dx.doi.org/10.1080/15548627.2016.1222991 10.1080/15548627.2016.1222991]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27560450 2].
#Jiang Y, Lee J, Lee JH, Lee JW, Kim JH, Choi WH, Yoo YD, Cha-Molstad H, Kim BY, Kwon YT, Noh SA, Kim KP, Lee MJ,  (2016) &quot;The arginylation branch of the N-end rule pathway positively regulates cellular autophagic flux and clearance of proteotoxic proteins.&quot; <i>Autophagy</i> <b>12</b>(11):2197&ndash;2212; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27560450 27560450]; doi: [https://dx.doi.org/10.1080/15548627.2016.1222991 10.1080/15548627.2016.1222991]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27560450 2].
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#Clulow JA, Storck EM, Lanyon-Hogg T, Kalesh KA, Jones LH, Tate EW,  (2017) &quot;Competition-based, quantitative chemical proteomics in breast cancer cells identifies new target profiles for sulforaphane.&quot; <i>Chem Commun (Camb)</i> <b>53</b>(37):5182&ndash;5185; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28439590 28439590]; doi: [https://dx.doi.org/10.1039/c6cc08797c 10.1039/c6cc08797c]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28439590 32].
#Clulow JA, Storck EM, Lanyon-Hogg T, Kalesh KA, Jones LH, Tate EW,  (2017) &quot;Competition-based, quantitative chemical proteomics in breast cancer cells identifies new target profiles for sulforaphane.&quot; <i>Chem Commun (Camb)</i> <b>53</b>(37):5182&ndash;5185; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28439590 28439590]; doi: [https://dx.doi.org/10.1039/c6cc08797c 10.1039/c6cc08797c]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28439590 32].
#Yeung ATY, Hale C, Lee AH, Gill EE, Bushell W, Parry-Smith D, Goulding D, Pickard D, Roumeliotis T, Choudhary J, Thomson N, Skarnes WC, Dougan G, Hancock REW,  (2017) &quot;Exploiting induced pluripotent stem cell-derived macrophages to unravel host factors influencing Chlamydia trachomatis pathogenesis.&quot; <i>Nat Commun</i> <b>8</b>:15013; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28440293 28440293]; doi: [https://dx.doi.org/10.1038/ncomms15013 10.1038/ncomms15013]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28440293 1].
#Yeung ATY, Hale C, Lee AH, Gill EE, Bushell W, Parry-Smith D, Goulding D, Pickard D, Roumeliotis T, Choudhary J, Thomson N, Skarnes WC, Dougan G, Hancock REW,  (2017) &quot;Exploiting induced pluripotent stem cell-derived macrophages to unravel host factors influencing Chlamydia trachomatis pathogenesis.&quot; <i>Nat Commun</i> <b>8</b>:15013; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28440293 28440293]; doi: [https://dx.doi.org/10.1038/ncomms15013 10.1038/ncomms15013]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28440293 1].
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#Labots M, van der Mijn JC, Beekhof R, Piersma SR, de Goeij-de Haas RR, Pham TV, Knol JC, Dekker H, van Grieken NCT, Verheul HMW, Jim&eacute;nez CR,  (2017) &quot;Phosphotyrosine-based-phosphoproteomics scaled-down to biopsy level for analysis of individual tumor biology and treatment selection.&quot; <i>J Proteomics</i> <b>162</b>:99&ndash;107; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28442448 28442448]; doi: [https://dx.doi.org/10.1016/j.jprot.2017.04.014 10.1016/j.jprot.2017.04.014]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28442448 40].
#Arntzen M&Oslash;, V&aacute;rnai A, Mackie RI, Eijsink VGH, Pope PB,  (2017) &quot;Outer membrane vesicles from Fibrobacter succinogenes S85 contain an array of carbohydrate-active enzymes with versatile polysaccharide-degrading capacity.&quot; <i>Environ Microbiol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28447389 28447389]; doi: [https://dx.doi.org/10.1111/1462-2920.13770 10.1111/1462-2920.13770]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28447389 20].
#Arntzen M&Oslash;, V&aacute;rnai A, Mackie RI, Eijsink VGH, Pope PB,  (2017) &quot;Outer membrane vesicles from Fibrobacter succinogenes S85 contain an array of carbohydrate-active enzymes with versatile polysaccharide-degrading capacity.&quot; <i>Environ Microbiol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28447389 28447389]; doi: [https://dx.doi.org/10.1111/1462-2920.13770 10.1111/1462-2920.13770]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28447389 20].
#Nguyen EV, Huhtinen K, Goo YA, Kaipio K, Andersson N, Rantanen V, Hynninen J, Lahesmaa R, Carpen O, Goodlett DR,  (2017) &quot;Hyper-phosphorylation of Sequestosome-1 distinguishes resistance to cisplatin in patient derived high grade serous ovarian cancer cells.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28455291 28455291]; doi: [https://dx.doi.org/10.1074/mcp.M116.058321 10.1074/mcp.M116.058321]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28455291 60].
#Nguyen EV, Huhtinen K, Goo YA, Kaipio K, Andersson N, Rantanen V, Hynninen J, Lahesmaa R, Carpen O, Goodlett DR,  (2017) &quot;Hyper-phosphorylation of Sequestosome-1 distinguishes resistance to cisplatin in patient derived high grade serous ovarian cancer cells.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28455291 28455291]; doi: [https://dx.doi.org/10.1074/mcp.M116.058321 10.1074/mcp.M116.058321]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28455291 60].
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#van den Eshof BL, Hoogendijk AJ, Simpson PJ, van Alphen FPJ, Zanivan S, Mertens K, Meijer AB, van den Biggelaar M,  (2017) &quot;Paradigm of Biased PAR1 (Protease-Activated Receptor-1) Activation and Inhibition in Endothelial Cells Dissected by Phosphoproteomics.&quot; <i>Arterioscler Thromb Vasc Biol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28818855 28818855]; doi: [https://dx.doi.org/10.1161/ATVBAHA.117.309926 10.1161/ATVBAHA.117.309926]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28818855 57].
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#Ayre DC, Chute IC, Joy AP, Barnett DA, Hogan AM, Gr&uuml;ll MP, Pe&ntilde;a-Castillo L, Lang AS, Lewis SM, Christian SL,  (2017) &quot;CD24 induces changes to the surface receptors of B cell microvesicles with variable effects on their RNA and protein cargo.&quot; <i>Sci Rep</i> <b>7</b>(1):8642; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28819186 28819186]; doi: [https://dx.doi.org/10.1038/s41598-017-08094-8 10.1038/s41598-017-08094-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28819186 146].
#Ayre DC, Chute IC, Joy AP, Barnett DA, Hogan AM, Gr&uuml;ll MP, Pe&ntilde;a-Castillo L, Lang AS, Lewis SM, Christian SL,  (2017) &quot;CD24 induces changes to the surface receptors of B cell microvesicles with variable effects on their RNA and protein cargo.&quot; <i>Sci Rep</i> <b>7</b>(1):8642; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28819186 28819186]; doi: [https://dx.doi.org/10.1038/s41598-017-08094-8 10.1038/s41598-017-08094-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28819186 146].
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#Singh H, Yu Y, Suh MJ, Torralba MG, Stenzel RD, Tovchigrechko A, Thovarai V, Harkins DM, Rajagopala SV, Osborne W, Cogen FR, Kaplowitz PB, Nelson KE, Madupu R, Pieper R,  (2017) &quot;Type 1 Diabetes: Urinary Proteomics and Protein Network Analysis Support Perturbation of Lysosomal Function.&quot; <i>Theranostics</i> <b>7</b>(10):2704&ndash;2717; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28819457 28819457]; doi: [https://dx.doi.org/10.7150/thno.19679 10.7150/thno.19679]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28819457 663].
#Hung CL, Pan SH, Han CL, Chang CW, Hsu YL, Su CH, Shih SC, Lai YJ, Chiang Chiau JS, Yeh HI, Liu CY, Lee HC, Lam CSP,  (2017) &quot;Membrane Proteomics of Impaired Energetics and Cytoskeletal Disorganization in Elderly Diet-Induced Diabetic Mice.&quot; <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28823169 28823169]; doi: [https://dx.doi.org/10.1021/acs.jproteome.7b00148 10.1021/acs.jproteome.7b00148]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28823169 14].
#Hung CL, Pan SH, Han CL, Chang CW, Hsu YL, Su CH, Shih SC, Lai YJ, Chiang Chiau JS, Yeh HI, Liu CY, Lee HC, Lam CSP,  (2017) &quot;Membrane Proteomics of Impaired Energetics and Cytoskeletal Disorganization in Elderly Diet-Induced Diabetic Mice.&quot; <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28823169 28823169]; doi: [https://dx.doi.org/10.1021/acs.jproteome.7b00148 10.1021/acs.jproteome.7b00148]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28823169 14].
#Fu L, Liu KK, Sun MA, Tian CP, Sun R, Morales Betanzos C, Tallman KA, Porter NA, Yang Y, Guo DJ, Liebler DC, Yang J,  (2017) &quot;Systematic and quantitative assessment of hydrogen peroxide reactivity with cysteines across human proteomes.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28827280 28827280]; doi: [https://dx.doi.org/10.1074/mcp.RA117.000108 10.1074/mcp.RA117.000108]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28827280 12].
#Fu L, Liu KK, Sun MA, Tian CP, Sun R, Morales Betanzos C, Tallman KA, Porter NA, Yang Y, Guo DJ, Liebler DC, Yang J,  (2017) &quot;Systematic and quantitative assessment of hydrogen peroxide reactivity with cysteines across human proteomes.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28827280 28827280]; doi: [https://dx.doi.org/10.1074/mcp.RA117.000108 10.1074/mcp.RA117.000108]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28827280 12].
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#Wildburger NC, Esparza TJ, LeDuc RD, Fellers RT, Thomas PM, Cairns NJ, Kelleher NL, Bateman RJ, Brody DL,  (2017) &quot;Diversity of Amyloid-beta Proteoforms in the Alzheimer&#39;s Disease Brain.&quot; <i>Sci Rep</i> <b>7</b>(1):9520; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28842697 28842697]; doi: [https://dx.doi.org/10.1038/s41598-017-10422-x 10.1038/s41598-017-10422-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28842697 22].
#Wildburger NC, Esparza TJ, LeDuc RD, Fellers RT, Thomas PM, Cairns NJ, Kelleher NL, Bateman RJ, Brody DL,  (2017) &quot;Diversity of Amyloid-beta Proteoforms in the Alzheimer&#39;s Disease Brain.&quot; <i>Sci Rep</i> <b>7</b>(1):9520; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28842697 28842697]; doi: [https://dx.doi.org/10.1038/s41598-017-10422-x 10.1038/s41598-017-10422-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28842697 22].
#Andersen PR, Tirian L, Vunjak M, Brennecke J,  (2017) &quot;A heterochromatin-dependent transcription machinery drives piRNA expression.&quot; <i>Nature</i> <b>549</b>(7670):54&ndash;59; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28847004 28847004]; doi: [https://dx.doi.org/10.1038/nature23482 10.1038/nature23482]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28847004 46].
#Andersen PR, Tirian L, Vunjak M, Brennecke J,  (2017) &quot;A heterochromatin-dependent transcription machinery drives piRNA expression.&quot; <i>Nature</i> <b>549</b>(7670):54&ndash;59; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28847004 28847004]; doi: [https://dx.doi.org/10.1038/nature23482 10.1038/nature23482]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28847004 46].
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#Guo J, Wang P, Cheng Q, Sun L, Wang H, Wang Y, Kao L, Li Y, Qiu T, Yang W, Shen H,  (2017) &quot;Proteomic analysis reveals strong mitochondrial involvement in cytoplasmic male sterility of pepper (Capsicum annuum L.).&quot; <i>J Proteomics</i> <b>168</b>:15&ndash;27; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28847649 28847649]; doi: [https://dx.doi.org/10.1016/j.jprot.2017.08.013 10.1016/j.jprot.2017.08.013]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28847649 6].
#Mohl BP, Emmott E, Roy P,  (2017) &quot;Phosphoproteomic analysis reveals the importance of kinase regulation during orbivirus infection.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28851738 28851738]; doi: [https://dx.doi.org/10.1074/mcp.M117.067355 10.1074/mcp.M117.067355]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28851738 6].
#Mohl BP, Emmott E, Roy P,  (2017) &quot;Phosphoproteomic analysis reveals the importance of kinase regulation during orbivirus infection.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28851738 28851738]; doi: [https://dx.doi.org/10.1074/mcp.M117.067355 10.1074/mcp.M117.067355]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28851738 6].
#Merkley ED, Sego LH, Lin A, Leiser OP, Kaiser BLD, Adkins JN, Keim PS, Wagner DM, Kreuzer HW,  (2017) &quot;Protein abundances can distinguish between naturally-occurring and laboratory strains of Yersinia pestis, the causative agent of plague.&quot; <i>PLoS One</i> <b>12</b>(8):e0183478; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28854255 28854255]; doi: [https://dx.doi.org/10.1371/journal.pone.0183478 10.1371/journal.pone.0183478]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28854255 343].
#Merkley ED, Sego LH, Lin A, Leiser OP, Kaiser BLD, Adkins JN, Keim PS, Wagner DM, Kreuzer HW,  (2017) &quot;Protein abundances can distinguish between naturally-occurring and laboratory strains of Yersinia pestis, the causative agent of plague.&quot; <i>PLoS One</i> <b>12</b>(8):e0183478; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28854255 28854255]; doi: [https://dx.doi.org/10.1371/journal.pone.0183478 10.1371/journal.pone.0183478]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28854255 343].
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#Avenarius MR, Krey JF, Dumont RA, Morgan CP, Benson CB, Vijayakumar S, Cunningham CL, Scheffer DI, Corey DP, M&uuml;ller U, Jones SM, Barr-Gillespie PG,  (2017) &quot;Heterodimeric capping protein is required for stereocilia length and width regulation.&quot; <i>J Cell Biol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28899994 28899994]; doi: [https://dx.doi.org/10.1083/jcb.201704171 10.1083/jcb.201704171]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28899994 52].
#Avenarius MR, Krey JF, Dumont RA, Morgan CP, Benson CB, Vijayakumar S, Cunningham CL, Scheffer DI, Corey DP, M&uuml;ller U, Jones SM, Barr-Gillespie PG,  (2017) &quot;Heterodimeric capping protein is required for stereocilia length and width regulation.&quot; <i>J Cell Biol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28899994 28899994]; doi: [https://dx.doi.org/10.1083/jcb.201704171 10.1083/jcb.201704171]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28899994 52].
#Rowland EA, Greco TM, Snowden CK, McCabe AL, Silhavy TJ, Cristea IM,  (2017) &quot;Sirtuin Lipoamidase Activity Is Conserved in Bacteria as a Regulator of Metabolic Enzyme Complexes.&quot; <i>MBio</i> <b>8</b>(5):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28900027 28900027]; doi: [https://dx.doi.org/10.1128/mBio.01096-17 10.1128/mBio.01096-17]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28900027 2].
#Rowland EA, Greco TM, Snowden CK, McCabe AL, Silhavy TJ, Cristea IM,  (2017) &quot;Sirtuin Lipoamidase Activity Is Conserved in Bacteria as a Regulator of Metabolic Enzyme Complexes.&quot; <i>MBio</i> <b>8</b>(5):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28900027 28900027]; doi: [https://dx.doi.org/10.1128/mBio.01096-17 10.1128/mBio.01096-17]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28900027 2].
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#Midgett M, L&oacute;pez CS, David L, Maloyan A, Rugonyi S,  (2017) &quot;Increased Hemodynamic Load in Early Embryonic Stages Alters Myofibril and Mitochondrial Organization in the Myocardium.&quot; <i>Front Physiol</i> <b>8</b>:631; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28912723 28912723]; doi: [https://dx.doi.org/10.3389/fphys.2017.00631 10.3389/fphys.2017.00631]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28912723 1].
#Hospital MA, Jacquel A, Mazed F, Saland E, Larrue C, Mondesir J, Birsen R, Green AS, Lambert M, Sujobert P, Gautier EF, Salnot V, Le Gall M, Decroocq J, Poulain L, Jacque N, Fontenay M, Kosmider O, R&eacute;cher C, Auberger P, Mayeux P, Bouscary D, Sarry JE, Tamburini J,  (2017) &quot;RSK2 is a new Pim2 target with pro-survival functions in FLT3-ITD-positive acute myeloid leukemia.&quot; <i>Leukemia</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28914261 28914261]; doi: [https://dx.doi.org/10.1038/leu.2017.284 10.1038/leu.2017.284]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28914261 17].
#Hospital MA, Jacquel A, Mazed F, Saland E, Larrue C, Mondesir J, Birsen R, Green AS, Lambert M, Sujobert P, Gautier EF, Salnot V, Le Gall M, Decroocq J, Poulain L, Jacque N, Fontenay M, Kosmider O, R&eacute;cher C, Auberger P, Mayeux P, Bouscary D, Sarry JE, Tamburini J,  (2017) &quot;RSK2 is a new Pim2 target with pro-survival functions in FLT3-ITD-positive acute myeloid leukemia.&quot; <i>Leukemia</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28914261 28914261]; doi: [https://dx.doi.org/10.1038/leu.2017.284 10.1038/leu.2017.284]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28914261 17].
#Tain LS, Sehlke R, Jain C, Chokkalingam M, Nagaraj N, Essers P, Rassner M, Gr&ouml;nke S, Froelich J, Dieterich C, Mann M, Alic N, Beyer A, Partridge L,  (2017) &quot;A proteomic atlas of insulin signalling reveals tissue-specific mechanisms of longevity assurance.&quot; <i>Mol Syst Biol</i> <b>13</b>(9):939; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28916541 28916541]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28916541 92].
#Tain LS, Sehlke R, Jain C, Chokkalingam M, Nagaraj N, Essers P, Rassner M, Gr&ouml;nke S, Froelich J, Dieterich C, Mann M, Alic N, Beyer A, Partridge L,  (2017) &quot;A proteomic atlas of insulin signalling reveals tissue-specific mechanisms of longevity assurance.&quot; <i>Mol Syst Biol</i> <b>13</b>(9):939; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28916541 28916541]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28916541 92].
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#Abdelmegid S, Murugaiyan J, Abo-Ismail M, Caswell JL, Kelton D, Kirby GM,  (2017) &quot;Identification of Host Defense-Related Proteins Using Label-Free Quantitative Proteomic Analysis of Milk Whey from Cows with Staphylococcus aureus Subclinical Mastitis.&quot; <i>Int J Mol Sci</i> <b>19</b>(1):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29283389 29283389]; doi: [https://dx.doi.org/10.3390/ijms19010078 10.3390/ijms19010078]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29283389 11].
#Abdelmegid S, Murugaiyan J, Abo-Ismail M, Caswell JL, Kelton D, Kirby GM,  (2017) &quot;Identification of Host Defense-Related Proteins Using Label-Free Quantitative Proteomic Analysis of Milk Whey from Cows with Staphylococcus aureus Subclinical Mastitis.&quot; <i>Int J Mol Sci</i> <b>19</b>(1):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29283389 29283389]; doi: [https://dx.doi.org/10.3390/ijms19010078 10.3390/ijms19010078]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29283389 11].
#Kelley RC, McDonagh B, Ferreira LF,  (2018) &quot;Advanced aging causes diaphragm functional abnormalities, global proteome remodeling, and loss of mitochondrial cysteine redox flexibility in mice.&quot; <i>Exp Gerontol</i> <b>103</b>:69&ndash;79; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29289553 29289553]; doi: [https://dx.doi.org/10.1016/j.exger.2017.12.017 10.1016/j.exger.2017.12.017]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29289553 24].
#Kelley RC, McDonagh B, Ferreira LF,  (2018) &quot;Advanced aging causes diaphragm functional abnormalities, global proteome remodeling, and loss of mitochondrial cysteine redox flexibility in mice.&quot; <i>Exp Gerontol</i> <b>103</b>:69&ndash;79; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29289553 29289553]; doi: [https://dx.doi.org/10.1016/j.exger.2017.12.017 10.1016/j.exger.2017.12.017]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29289553 24].
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#Behr M, Sergeant K, Leclercq CC, Planchon S, Guignard C, Lenouvel A, Renaut J, Hausman JF, Lutts S, Guerriero G,  (2018) &quot;Insights into the molecular regulation of monolignol-derived product biosynthesis in the growing hemp hypocotyl.&quot; <i>BMC Plant Biol</i> <b>18</b>(1):1; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29291729 29291729]; doi: [https://dx.doi.org/10.1186/s12870-017-1213-1 10.1186/s12870-017-1213-1]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29291729 20].
#Ritz D, Sani E, Debiec H, Ronco P, Neri D, Fugmann T,  (2018) &quot;Membranal and blood-soluble HLA class II peptidome analyses using data-dependent and independent acquisition.&quot; <i>Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29314611 29314611]; doi: [https://dx.doi.org/10.1002/pmic.201700246 10.1002/pmic.201700246]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29314611 27].
#Ritz D, Sani E, Debiec H, Ronco P, Neri D, Fugmann T,  (2018) &quot;Membranal and blood-soluble HLA class II peptidome analyses using data-dependent and independent acquisition.&quot; <i>Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29314611 29314611]; doi: [https://dx.doi.org/10.1002/pmic.201700246 10.1002/pmic.201700246]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29314611 27].
#Kooijman S, Brummelman J, van Els CACM, Marino F, Heck AJR, Mommen GPM, Metz B, Kersten GFA, Pennings JLA, Meiring HD,  (2018) &quot;Novel identified aluminum hydroxide-induced pathways prove monocyte activation and pro-inflammatory preparedness.&quot; <i>J Proteomics</i> <b>175</b>:144&ndash;155; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29317357 29317357]; doi: [https://dx.doi.org/10.1016/j.jprot.2017.12.021 10.1016/j.jprot.2017.12.021]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29317357 55].
#Kooijman S, Brummelman J, van Els CACM, Marino F, Heck AJR, Mommen GPM, Metz B, Kersten GFA, Pennings JLA, Meiring HD,  (2018) &quot;Novel identified aluminum hydroxide-induced pathways prove monocyte activation and pro-inflammatory preparedness.&quot; <i>J Proteomics</i> <b>175</b>:144&ndash;155; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29317357 29317357]; doi: [https://dx.doi.org/10.1016/j.jprot.2017.12.021 10.1016/j.jprot.2017.12.021]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29317357 55].
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#Karayel &Ouml;, &#x15E;anal E, Giese SH, &Uuml;retmen Kag&#x131;al&#x131; ZC, Polat AN, Hu CK, Renard BY, Tuncbag N, &Ouml;zl&uuml; N,  (2018) &quot;Comparative phosphoproteomic analysis reveals signaling networks regulating monopolar and bipolar cytokinesis.&quot; <i>Sci Rep</i> <b>8</b>(1):2269; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29396449 29396449]; doi: [https://dx.doi.org/10.1038/s41598-018-20231-5 10.1038/s41598-018-20231-5]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29396449 16].
#Karayel &Ouml;, &#x15E;anal E, Giese SH, &Uuml;retmen Kag&#x131;al&#x131; ZC, Polat AN, Hu CK, Renard BY, Tuncbag N, &Ouml;zl&uuml; N,  (2018) &quot;Comparative phosphoproteomic analysis reveals signaling networks regulating monopolar and bipolar cytokinesis.&quot; <i>Sci Rep</i> <b>8</b>(1):2269; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29396449 29396449]; doi: [https://dx.doi.org/10.1038/s41598-018-20231-5 10.1038/s41598-018-20231-5]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29396449 16].
#Ikoma M, Gantt S, Casper C, Ogata Y, Zhang Q, Basom R, Dyen MR, Rose TM, Barcy S,  (2018) &quot;KSHV oral shedding and plasma viremia result in significant changes in the extracellular tumorigenic miRNA expression profile in individuals infected with the malaria parasite.&quot; <i>PLoS One</i> <b>13</b>(2):e0192659; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29425228 29425228]; doi: [https://dx.doi.org/10.1371/journal.pone.0192659 10.1371/journal.pone.0192659]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29425228 3].
#Ikoma M, Gantt S, Casper C, Ogata Y, Zhang Q, Basom R, Dyen MR, Rose TM, Barcy S,  (2018) &quot;KSHV oral shedding and plasma viremia result in significant changes in the extracellular tumorigenic miRNA expression profile in individuals infected with the malaria parasite.&quot; <i>PLoS One</i> <b>13</b>(2):e0192659; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29425228 29425228]; doi: [https://dx.doi.org/10.1371/journal.pone.0192659 10.1371/journal.pone.0192659]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29425228 3].
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#Vornhagen J, Quach P, Santana-Ufret V, Alishetti V, Brokaw A, Armistead B, Qing Tang H, MacDonald JW, Bammler TK, Adams Waldorf KM, Uldbjerg N, Rajagopal L,  (2018) &quot;Human Cervical Mucus Plugs Exhibit Insufficiencies in Antimicrobial Activity Towards Group B Streptococcus.&quot; <i>J Infect Dis</i> <b>217</b>(10):1626&ndash;1636; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29425317 29425317]; doi: [https://dx.doi.org/10.1093/infdis/jiy076 10.1093/infdis/jiy076]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29425317 1].
#Sandow JJ, Rainczuk A, Infusini G, Makanji M, Bilandzic M, Wilson AL, Fairweather N, Stanton PG, Garama D, Gough D, Jobling TW, Webb AI, Stephens AN,  (2018) &quot;Discovery and Validation of Novel Protein Biomarkers in Ovarian Cancer Patient Urine.&quot; <i>Proteomics Clin Appl</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29426060 29426060]; doi: [https://dx.doi.org/10.1002/prca.201700135 10.1002/prca.201700135]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29426060 10].
#Sandow JJ, Rainczuk A, Infusini G, Makanji M, Bilandzic M, Wilson AL, Fairweather N, Stanton PG, Garama D, Gough D, Jobling TW, Webb AI, Stephens AN,  (2018) &quot;Discovery and Validation of Novel Protein Biomarkers in Ovarian Cancer Patient Urine.&quot; <i>Proteomics Clin Appl</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29426060 29426060]; doi: [https://dx.doi.org/10.1002/prca.201700135 10.1002/prca.201700135]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29426060 10].
#De Muyt A, Pyatnitskaya A, Andr&eacute;ani J, Ranjha L, Ramus C, Laureau R, Fernandez-Vega A, Holoch D, Girard E, Govin J, Margueron R, Cout&eacute; Y, Cejka P, Gu&eacute;rois R, Borde V,  (2018) &quot;A meiotic XPF-ERCC1-like complex recognizes joint molecule recombination intermediates to promote crossover formation.&quot; <i>Genes Dev</i> <b>32</b>(3-4):283&ndash;296; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29440262 29440262]; doi: [https://dx.doi.org/10.1101/gad.308510.117 10.1101/gad.308510.117]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29440262 19].
#De Muyt A, Pyatnitskaya A, Andr&eacute;ani J, Ranjha L, Ramus C, Laureau R, Fernandez-Vega A, Holoch D, Girard E, Govin J, Margueron R, Cout&eacute; Y, Cejka P, Gu&eacute;rois R, Borde V,  (2018) &quot;A meiotic XPF-ERCC1-like complex recognizes joint molecule recombination intermediates to promote crossover formation.&quot; <i>Genes Dev</i> <b>32</b>(3-4):283&ndash;296; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29440262 29440262]; doi: [https://dx.doi.org/10.1101/gad.308510.117 10.1101/gad.308510.117]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29440262 19].
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#Carette X, Platig J, Young DC, Helmel M, Young AT, Wang Z, Potluri LP, Moody CS, Zeng J, Prisic S, Paulson JN, Muntel J, Madduri AVR, Velarde J, Mayfield JA, Locher C, Wang T, Quackenbush J, Rhee KY, Moody DB, Steen H, Husson RN,  (2018) &quot;Multisystem Analysis of <i>Mycobacterium tuberculosis</i> Reveals Kinase-Dependent Remodeling of the Pathogen-Environment Interface.&quot; <i>MBio</i> <b>9</b>(2):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29511081 29511081]; doi: [https://dx.doi.org/10.1128/mBio.02333-17 10.1128/mBio.02333-17]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29511081 48].
#Carette X, Platig J, Young DC, Helmel M, Young AT, Wang Z, Potluri LP, Moody CS, Zeng J, Prisic S, Paulson JN, Muntel J, Madduri AVR, Velarde J, Mayfield JA, Locher C, Wang T, Quackenbush J, Rhee KY, Moody DB, Steen H, Husson RN,  (2018) &quot;Multisystem Analysis of <i>Mycobacterium tuberculosis</i> Reveals Kinase-Dependent Remodeling of the Pathogen-Environment Interface.&quot; <i>MBio</i> <b>9</b>(2):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29511081 29511081]; doi: [https://dx.doi.org/10.1128/mBio.02333-17 10.1128/mBio.02333-17]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29511081 48].
#Iradi MCG, Triplett JC, Thomas JD, Davila R, Crown AM, Brown H, Lewis J, Swanson MS, Xu G, Rodriguez-Lebron E, Borchelt DR,  (2018) &quot;Characterization of gene regulation and protein interaction networks for Matrin 3 encoding mutations linked to amyotrophic lateral sclerosis and myopathy.&quot; <i>Sci Rep</i> <b>8</b>(1):4049; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29511296 29511296]; doi: [https://dx.doi.org/10.1038/s41598-018-21371-4 10.1038/s41598-018-21371-4]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29511296 23].
#Iradi MCG, Triplett JC, Thomas JD, Davila R, Crown AM, Brown H, Lewis J, Swanson MS, Xu G, Rodriguez-Lebron E, Borchelt DR,  (2018) &quot;Characterization of gene regulation and protein interaction networks for Matrin 3 encoding mutations linked to amyotrophic lateral sclerosis and myopathy.&quot; <i>Sci Rep</i> <b>8</b>(1):4049; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29511296 29511296]; doi: [https://dx.doi.org/10.1038/s41598-018-21371-4 10.1038/s41598-018-21371-4]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29511296 23].
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#Evans PR, Gerber KJ, Dammer EB, Duong DM, Goswami D, Lustberg DJ, Zou J, Yang JJ, Dudek SM, Griffin PR, Seyfried NT, Hepler JR,  (2018) &quot;Interactome Analysis Reveals Regulator of G Protein Signaling 14 (RGS14) is a Novel Calcium/Calmodulin (Ca<sup>2+</sup>/CaM) and CaM Kinase II (CaMKII) Binding Partner.&quot; <i>J Proteome Res</i> <b>17</b>(4):1700&ndash;1711; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29518331 29518331]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00027 10.1021/acs.jproteome.8b00027]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29518331 6].
#Ge S, Xia X, Ding C, Zhen B, Zhou Q, Feng J, Yuan J, Chen R, Li Y, Ge Z, Ji J, Zhang L, Wang J, Li Z, Lai Y, Hu Y, Li Y, Li Y, Gao J, Chen L, Xu J, Zhang C, Jung SY, Choi JM, Jain A, Liu M, Song L, Liu W, Guo G, Gong T, Huang Y, Qiu Y, Huang W, Shi T, Zhu W, Wang Y, He F, Shen L, Qin J,  (2018) &quot;A proteomic landscape of diffuse-type gastric cancer.&quot; <i>Nat Commun</i> <b>9</b>(1):1012; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29520031 29520031]; doi: [https://dx.doi.org/10.1038/s41467-018-03121-2 10.1038/s41467-018-03121-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29520031 164].
#Ge S, Xia X, Ding C, Zhen B, Zhou Q, Feng J, Yuan J, Chen R, Li Y, Ge Z, Ji J, Zhang L, Wang J, Li Z, Lai Y, Hu Y, Li Y, Li Y, Gao J, Chen L, Xu J, Zhang C, Jung SY, Choi JM, Jain A, Liu M, Song L, Liu W, Guo G, Gong T, Huang Y, Qiu Y, Huang W, Shi T, Zhu W, Wang Y, He F, Shen L, Qin J,  (2018) &quot;A proteomic landscape of diffuse-type gastric cancer.&quot; <i>Nat Commun</i> <b>9</b>(1):1012; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29520031 29520031]; doi: [https://dx.doi.org/10.1038/s41467-018-03121-2 10.1038/s41467-018-03121-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29520031 164].
#Ojalill M, Rappu P, Siljam&auml;ki E, Taimen P, Bostr&ouml;m P, Heino J,  (2018) &quot;The composition of prostate core matrisome in vivo and in vitro unveiled by mass spectrometric analysis.&quot; <i>Prostate</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29520855 29520855]; doi: [https://dx.doi.org/10.1002/pros.23503 10.1002/pros.23503]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29520855 62].
#Ojalill M, Rappu P, Siljam&auml;ki E, Taimen P, Bostr&ouml;m P, Heino J,  (2018) &quot;The composition of prostate core matrisome in vivo and in vitro unveiled by mass spectrometric analysis.&quot; <i>Prostate</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29520855 29520855]; doi: [https://dx.doi.org/10.1002/pros.23503 10.1002/pros.23503]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29520855 62].
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#Costanza B, Turtoi A, Bellahc&egrave;ne A, Hirano T, Peulen O, Blomme A, Hennequi&egrave;re V, Mutijima E, Boniver J, Meuwis MA, Josse C, Koopmansch B, Segers K, Yokobori T, Fahmy K, Thiry M, Coimbra C, Garbacki N, Colige A, Baiwir D, Bours V, Louis E, Detry O, Delvenne P, Nishiyama M, Castronovo V,  (2018) &quot;Innovative methodology for the identification of soluble biomarkers in fresh tissues.&quot; <i>Oncotarget</i> <b>9</b>(12):10665&ndash;10680; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29535834 29535834]; doi: [https://dx.doi.org/10.18632/oncotarget.24366 10.18632/oncotarget.24366]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29535834 15].
#Costanza B, Turtoi A, Bellahc&egrave;ne A, Hirano T, Peulen O, Blomme A, Hennequi&egrave;re V, Mutijima E, Boniver J, Meuwis MA, Josse C, Koopmansch B, Segers K, Yokobori T, Fahmy K, Thiry M, Coimbra C, Garbacki N, Colige A, Baiwir D, Bours V, Louis E, Detry O, Delvenne P, Nishiyama M, Castronovo V,  (2018) &quot;Innovative methodology for the identification of soluble biomarkers in fresh tissues.&quot; <i>Oncotarget</i> <b>9</b>(12):10665&ndash;10680; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29535834 29535834]; doi: [https://dx.doi.org/10.18632/oncotarget.24366 10.18632/oncotarget.24366]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29535834 15].
#Zila N, Bileck A, Muqaku B, Janker L, Eichhoff OM, Cheng PF, Dummer R, Levesque MP, Gerner C, Paulitschke V,  (2018) &quot;Proteomics-based insights into mitogen-activated protein kinase inhibitor resistance of cerebral melanoma metastases.&quot; <i>Clin Proteomics</i> <b>15</b>:13; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29541007 29541007]; doi: [https://dx.doi.org/10.1186/s12014-018-9189-x 10.1186/s12014-018-9189-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29541007 36].
#Zila N, Bileck A, Muqaku B, Janker L, Eichhoff OM, Cheng PF, Dummer R, Levesque MP, Gerner C, Paulitschke V,  (2018) &quot;Proteomics-based insights into mitogen-activated protein kinase inhibitor resistance of cerebral melanoma metastases.&quot; <i>Clin Proteomics</i> <b>15</b>:13; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29541007 29541007]; doi: [https://dx.doi.org/10.1186/s12014-018-9189-x 10.1186/s12014-018-9189-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29541007 36].
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#Huang X, Zhu H, Gao Z, Li J, Zhuang J, Dong Y, Shen B, Li M, Zhou H, Guo H, Huang R, Yan J,  (2018) &quot;Wnt7a activates canonical Wnt signaling, promotes bladder cancer cell invasion, and is suppressed by miR-370-3p.&quot; <i>J Biol Chem</i> <b>293</b>(18):6693&ndash;6706; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29549123 29549123]; doi: [https://dx.doi.org/10.1074/jbc.RA118.001689 10.1074/jbc.RA118.001689]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29549123 1].
#Savitski MM, Zinn N, Faelth-Savitski M, Poeckel D, Gade S, Becher I, Muelbaier M, Wagner AJ, Strohmer K, Werner T, Melchert S, Petretich M, Rutkowska A, Vappiani J, Franken H, Steidel M, Sweetman GM, Gilan O, Lam EYN, Dawson MA, Prinjha RK, Grandi P, Bergamini G, Bantscheff M,  (2018) &quot;Multiplexed Proteome Dynamics Profiling Reveals Mechanisms Controlling Protein Homeostasis.&quot; <i>Cell</i> <b>173</b>(1):260&ndash;274.e25; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29551266 29551266]; doi: [https://dx.doi.org/10.1016/j.cell.2018.02.030 10.1016/j.cell.2018.02.030]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29551266 5].
#Savitski MM, Zinn N, Faelth-Savitski M, Poeckel D, Gade S, Becher I, Muelbaier M, Wagner AJ, Strohmer K, Werner T, Melchert S, Petretich M, Rutkowska A, Vappiani J, Franken H, Steidel M, Sweetman GM, Gilan O, Lam EYN, Dawson MA, Prinjha RK, Grandi P, Bergamini G, Bantscheff M,  (2018) &quot;Multiplexed Proteome Dynamics Profiling Reveals Mechanisms Controlling Protein Homeostasis.&quot; <i>Cell</i> <b>173</b>(1):260&ndash;274.e25; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29551266 29551266]; doi: [https://dx.doi.org/10.1016/j.cell.2018.02.030 10.1016/j.cell.2018.02.030]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29551266 5].
#Salunkhe V, De Cuyper IM, Papadopoulos P, van der Meer PF, Daal BB, Villa-Fajardo M, de Korte D, van den Berg TK, Guti&eacute;rrez L,  (2018) &quot;A comprehensive proteomics study on platelet concentrates: Platelet proteome, storage time and Mirasol pathogen reduction technology.&quot; <i>Platelets</i> <b></b>:1&ndash;12; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29553857 29553857]; doi: [https://dx.doi.org/10.1080/09537104.2018.1447658 10.1080/09537104.2018.1447658]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29553857 27].
#Salunkhe V, De Cuyper IM, Papadopoulos P, van der Meer PF, Daal BB, Villa-Fajardo M, de Korte D, van den Berg TK, Guti&eacute;rrez L,  (2018) &quot;A comprehensive proteomics study on platelet concentrates: Platelet proteome, storage time and Mirasol pathogen reduction technology.&quot; <i>Platelets</i> <b></b>:1&ndash;12; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29553857 29553857]; doi: [https://dx.doi.org/10.1080/09537104.2018.1447658 10.1080/09537104.2018.1447658]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29553857 27].
#Liang P, Zhu W, Lan T, Tao Q,  (2018) &quot;Detection of salivary protein biomarkers of saliva secretion disorder in a primary Sj&ouml;gren syndrome murine model.&quot; <i>J Pharm Biomed Anal</i> <b>154</b>:252&ndash;262; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29558726 29558726]; doi: [https://dx.doi.org/10.1016/j.jpba.2018.03.023 10.1016/j.jpba.2018.03.023]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29558726 2].
#Liang P, Zhu W, Lan T, Tao Q,  (2018) &quot;Detection of salivary protein biomarkers of saliva secretion disorder in a primary Sj&ouml;gren syndrome murine model.&quot; <i>J Pharm Biomed Anal</i> <b>154</b>:252&ndash;262; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29558726 29558726]; doi: [https://dx.doi.org/10.1016/j.jpba.2018.03.023 10.1016/j.jpba.2018.03.023]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29558726 2].
#Saei AA, Sabatier P, G&uuml;ler Tokat &Uuml;, Chernobrovkin A, Pirmoradian M, Zubarev RA,  (2018) &quot;Comparative proteomics of dying and surviving cancer cells improves&nbsp;the identification of drug targets and sheds light on cell life/death decisions.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29572246 29572246]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000610 10.1074/mcp.RA118.000610]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29572246 90].
#Saei AA, Sabatier P, G&uuml;ler Tokat &Uuml;, Chernobrovkin A, Pirmoradian M, Zubarev RA,  (2018) &quot;Comparative proteomics of dying and surviving cancer cells improves&nbsp;the identification of drug targets and sheds light on cell life/death decisions.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29572246 29572246]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000610 10.1074/mcp.RA118.000610]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29572246 90].
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#Zhang C, Leng W, Sun C, Lu T, Chen Z, Men X, Wang Y, Wang G, Zhen B, Qin J,  (2018) &quot;Urine Proteome Profiling Predicts Lung Cancer from Control Cases and Other Tumors.&quot; <i>EBioMedicine</i> <b>30</b>:120&ndash;128; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29576497 29576497]; doi: [https://dx.doi.org/10.1016/j.ebiom.2018.03.009 10.1016/j.ebiom.2018.03.009]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29576497 557].
#Haller C, Chaskar P, Piccand J, Cominetti O, Macron C, Dayon L, Kraus MR,  (2018) &quot;Insights into islet differentiation and maturation through proteomic characterization of a human iPSC-derived pancreatic endocrine model.&quot; <i>Proteomics Clin Appl</i> <b></b>:e1600173; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29578310 29578310]; doi: [https://dx.doi.org/10.1002/prca.201600173 10.1002/prca.201600173]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29578310 218].
#Haller C, Chaskar P, Piccand J, Cominetti O, Macron C, Dayon L, Kraus MR,  (2018) &quot;Insights into islet differentiation and maturation through proteomic characterization of a human iPSC-derived pancreatic endocrine model.&quot; <i>Proteomics Clin Appl</i> <b></b>:e1600173; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29578310 29578310]; doi: [https://dx.doi.org/10.1002/prca.201600173 10.1002/prca.201600173]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29578310 218].
#Tucher C, Bode K, Schiller P, Cla&szlig;en L, Birr C, Souto-Carneiro MM, Blank N, Lorenz HM, Schiller M,  (2018) &quot;Extracellular Vesicle Subtypes Released From Activated or Apoptotic T-Lymphocytes Carry a Specific and Stimulus-Dependent Protein Cargo.&quot; <i>Front Immunol</i> <b>9</b>:534; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29599781 29599781]; doi: [https://dx.doi.org/10.3389/fimmu.2018.00534 10.3389/fimmu.2018.00534]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29599781 24].
#Tucher C, Bode K, Schiller P, Cla&szlig;en L, Birr C, Souto-Carneiro MM, Blank N, Lorenz HM, Schiller M,  (2018) &quot;Extracellular Vesicle Subtypes Released From Activated or Apoptotic T-Lymphocytes Carry a Specific and Stimulus-Dependent Protein Cargo.&quot; <i>Front Immunol</i> <b>9</b>:534; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29599781 29599781]; doi: [https://dx.doi.org/10.3389/fimmu.2018.00534 10.3389/fimmu.2018.00534]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29599781 24].
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#Shraibman B, Barnea E, Melamed Kadosh D, Haimovich Y, Slobodin G, Rosner I, L&oacute;pez-Larrea C, Hilf N, Kuttruff S, Song C, Britten C, Castle J, Kreiter S, Frenzel K, Tatagiba M, Tabatabai G, Dietrich PY, Dutoit V, Wick W, Platten M, Winkler F, Von Deimling A, Kroep J, Sahuquillo J, Martinez-Ricarte F, Rodon J, Lassen U, Ottensmeier C, van der Burg SH, Thor Straten P, Poulsen HS, Ponsati B, Okada H, Rammensee HG, Sahin U, Singh H, Admon A,  (2018) &quot;Identification of tumor antigens among the HLA peptidomes of Glioblastoma tumors and plasma.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30072578 30072578]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000792 10.1074/mcp.RA118.000792]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30072578 75].
#Shraibman B, Barnea E, Melamed Kadosh D, Haimovich Y, Slobodin G, Rosner I, L&oacute;pez-Larrea C, Hilf N, Kuttruff S, Song C, Britten C, Castle J, Kreiter S, Frenzel K, Tatagiba M, Tabatabai G, Dietrich PY, Dutoit V, Wick W, Platten M, Winkler F, Von Deimling A, Kroep J, Sahuquillo J, Martinez-Ricarte F, Rodon J, Lassen U, Ottensmeier C, van der Burg SH, Thor Straten P, Poulsen HS, Ponsati B, Okada H, Rammensee HG, Sahin U, Singh H, Admon A,  (2018) &quot;Identification of tumor antigens among the HLA peptidomes of Glioblastoma tumors and plasma.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30072578 30072578]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000792 10.1074/mcp.RA118.000792]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30072578 75].
#Park S, Park JH, Jung HJ, Jang JH, Ahn S, Kim Y, Suh PG, Chae S, Yoon JH, Ryu SH, Hwang D,  (2018) &quot;A secretome profile indicative of oleate-induced proliferation of HepG2 hepatocellular carcinoma cells.&quot; <i>Exp Mol Med</i> <b>50</b>(8):93; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30076294 30076294]; doi: [https://dx.doi.org/10.1038/s12276-018-0120-3 10.1038/s12276-018-0120-3]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30076294 24].
#Park S, Park JH, Jung HJ, Jang JH, Ahn S, Kim Y, Suh PG, Chae S, Yoon JH, Ryu SH, Hwang D,  (2018) &quot;A secretome profile indicative of oleate-induced proliferation of HepG2 hepatocellular carcinoma cells.&quot; <i>Exp Mol Med</i> <b>50</b>(8):93; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30076294 30076294]; doi: [https://dx.doi.org/10.1038/s12276-018-0120-3 10.1038/s12276-018-0120-3]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30076294 24].
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#de la Parra C, Ernlund A, Alard A, Ruggles K, Ueberheide B, Schneider RJ,  (2018) &quot;A widespread alternate form of cap-dependent mRNA translation initiation.&quot; <i>Nat Commun</i> <b>9</b>(1):3068; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30076308 30076308]; doi: [https://dx.doi.org/10.1038/s41467-018-05539-0 10.1038/s41467-018-05539-0]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30076308 21].
#Kozono S, Lin YM, Seo HS, Pinch B, Lian X, Qiu C, Herbert MK, Chen CH, Tan L, Gao ZJ, Massefski W, Doctor ZM, Jackson BP, Chen Y, Dhe-Paganon S, Lu KP, Zhou XZ,  (2018) &quot;Arsenic targets Pin1 and cooperates with retinoic acid to inhibit cancer-driving pathways and tumor-initiating cells.&quot; <i>Nat Commun</i> <b>9</b>(1):3069; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30093655 30093655]; doi: [https://dx.doi.org/10.1038/s41467-018-05402-2 10.1038/s41467-018-05402-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30093655 12].
#Kozono S, Lin YM, Seo HS, Pinch B, Lian X, Qiu C, Herbert MK, Chen CH, Tan L, Gao ZJ, Massefski W, Doctor ZM, Jackson BP, Chen Y, Dhe-Paganon S, Lu KP, Zhou XZ,  (2018) &quot;Arsenic targets Pin1 and cooperates with retinoic acid to inhibit cancer-driving pathways and tumor-initiating cells.&quot; <i>Nat Commun</i> <b>9</b>(1):3069; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30093655 30093655]; doi: [https://dx.doi.org/10.1038/s41467-018-05402-2 10.1038/s41467-018-05402-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30093655 12].
#Kumar G, Hummel K, Razzazi-Fazeli E, El-Matbouli M,  (2018) &quot;Proteome Profiles of Head Kidney and Spleen of Rainbow Trout (Oncorhynchus Mykiss).&quot; <i>Proteomics</i> <b></b>:e1800101; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30094954 30094954]; doi: [https://dx.doi.org/10.1002/pmic.201800101 10.1002/pmic.201800101]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30094954 54].
#Kumar G, Hummel K, Razzazi-Fazeli E, El-Matbouli M,  (2018) &quot;Proteome Profiles of Head Kidney and Spleen of Rainbow Trout (Oncorhynchus Mykiss).&quot; <i>Proteomics</i> <b></b>:e1800101; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30094954 30094954]; doi: [https://dx.doi.org/10.1002/pmic.201800101 10.1002/pmic.201800101]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30094954 54].
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#Hwang H, Jeong JE, Lee HK, Yun KN, An HJ, Lee B, Paik YK, Jeong TS, Yee GT, Kim JY, Yoo JS,  (2018) &quot;Identification of Missing Proteins in Human Olfactory Epithelial Tissue by Liquid Chromatography-Tandem Mass Spectrometry.&quot; <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30113170 30113170]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00408 10.1021/acs.jproteome.8b00408]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30113170 23].
#Hwang H, Jeong JE, Lee HK, Yun KN, An HJ, Lee B, Paik YK, Jeong TS, Yee GT, Kim JY, Yoo JS,  (2018) &quot;Identification of Missing Proteins in Human Olfactory Epithelial Tissue by Liquid Chromatography-Tandem Mass Spectrometry.&quot; <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30113170 30113170]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00408 10.1021/acs.jproteome.8b00408]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30113170 23].
#Simunovic F, Winninger O, Strassburg S, Koch HG, Finkenzeller G, Stark GB, Lampert FM,  (2019) &quot;Increased differentiation and production of extracellular matrix components of primary human osteoblasts after cocultivation with endothelial cells: A quantitative proteomics approach.&quot; <i>J Cell Biochem</i> <b>120</b>(1):396&ndash;404; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30126049 30126049]; doi: [https://dx.doi.org/10.1002/jcb.27394 10.1002/jcb.27394]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30126049 20].
#Simunovic F, Winninger O, Strassburg S, Koch HG, Finkenzeller G, Stark GB, Lampert FM,  (2019) &quot;Increased differentiation and production of extracellular matrix components of primary human osteoblasts after cocultivation with endothelial cells: A quantitative proteomics approach.&quot; <i>J Cell Biochem</i> <b>120</b>(1):396&ndash;404; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30126049 30126049]; doi: [https://dx.doi.org/10.1002/jcb.27394 10.1002/jcb.27394]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30126049 20].
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#Shen ZQ, Shi B, Wang TR, Jiao J, Shang X, Wu QJ, Zhou YM, Cao TF, Du Q, Wang XX, Li D,  (2018) &quot;Characterization of the Sperm Proteome and Reproductive Outcomes with <i>in Vitro</i> Fertilization after a Reduction in Male Ejaculatory Abstinence Period.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30126978 30126978]; doi: [https://dx.doi.org/10.1074/mcp.RA117.000541 10.1074/mcp.RA117.000541]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30126978 18].
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#Locatelli G, Theodorou D, Kendirli A, Jord&atilde;o MJC, Staszewski O, Phulphagar K, Cantuti-Castelvetri L, Dagkalis A, Bessis A, Simons M, Meissner F, Prinz M, Kerschensteiner M,  (2018) &quot;Mononuclear phagocytes locally specify and adapt their phenotype in a multiple sclerosis model.&quot; <i>Nat Neurosci</i> <b>21</b>(9):1196&ndash;1208; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30127427 30127427]; doi: [https://dx.doi.org/10.1038/s41593-018-0212-3 10.1038/s41593-018-0212-3]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30127427 78].
#DeLeon-Pennell KY, Mouton AJ, Ero OK, Ma Y, Padmanabhan Iyer R, Flynn ER, Espinoza I, Musani SK, Vasan RS, Hall ME, Fox ER, Lindsey ML,  (2018) &quot;LXR/RXR signaling and neutrophil phenotype following myocardial infarction classify sex differences in remodeling.&quot; <i>Basic Res Cardiol</i> <b>113</b>(5):40; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30132266 30132266]; doi: [https://dx.doi.org/10.1007/s00395-018-0699-5 10.1007/s00395-018-0699-5]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30132266 120].
#DeLeon-Pennell KY, Mouton AJ, Ero OK, Ma Y, Padmanabhan Iyer R, Flynn ER, Espinoza I, Musani SK, Vasan RS, Hall ME, Fox ER, Lindsey ML,  (2018) &quot;LXR/RXR signaling and neutrophil phenotype following myocardial infarction classify sex differences in remodeling.&quot; <i>Basic Res Cardiol</i> <b>113</b>(5):40; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30132266 30132266]; doi: [https://dx.doi.org/10.1007/s00395-018-0699-5 10.1007/s00395-018-0699-5]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30132266 120].
#We&szlig;becher IM, Hinrichsen I, Funke S, Oellerich T, Plotz G, Zeuzem S, Grus FH, Biondi RM, Brieger A,  (2018) &quot;DNA mismatch repair activity of MutL&alpha; is regulated by CK2-dependent phosphorylation of MLH1 (S477).&quot; <i>Mol Carcinog</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30136313 30136313]; doi: [https://dx.doi.org/10.1002/mc.22892 10.1002/mc.22892]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30136313 2].
#We&szlig;becher IM, Hinrichsen I, Funke S, Oellerich T, Plotz G, Zeuzem S, Grus FH, Biondi RM, Brieger A,  (2018) &quot;DNA mismatch repair activity of MutL&alpha; is regulated by CK2-dependent phosphorylation of MLH1 (S477).&quot; <i>Mol Carcinog</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30136313 30136313]; doi: [https://dx.doi.org/10.1002/mc.22892 10.1002/mc.22892]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30136313 2].
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#Bruning U, Morales-Rodriguez F, Kalucka J, Goveia J, Taverna F, Queiroz KCS, Dubois C, Cantelmo AR, Chen R, Loroch S, Timmerman E, Caixeta V, Bloch K, Conradi LC, Treps L, Staes A, Gevaert K, Tee A, Dewerchin M, Semenkovich CF, Impens F, Schilling B, Verdin E, Swinnen JV, Meier JL, Kulkarni RA, Sickmann A, Ghesqui&egrave;re B, Schoonjans L, Li X, Mazzone M, Carmeliet P,  (2018) &quot;Impairment of Angiogenesis by Fatty Acid Synthase Inhibition Involves mTOR Malonylation.&quot; <i>Cell Metab</i> <b>28</b>(6):866&ndash;880.e15; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30146486 30146486]; doi: [https://dx.doi.org/10.1016/j.cmet.2018.07.019 10.1016/j.cmet.2018.07.019]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30146486 2].
#Varland S, Aksnes H, Kryuchkov F, Impens F, Van Haver D, Jonckheere V, Ziegler M, Gevaert K, Van Damme P, Arnesen T,  (2018) &quot;N-terminal acetylation levels are maintained during acetyl-CoA deficiency in Saccharomyces cerevisiae.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30150368 30150368]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000982 10.1074/mcp.RA118.000982]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30150368 17].
#Varland S, Aksnes H, Kryuchkov F, Impens F, Van Haver D, Jonckheere V, Ziegler M, Gevaert K, Van Damme P, Arnesen T,  (2018) &quot;N-terminal acetylation levels are maintained during acetyl-CoA deficiency in Saccharomyces cerevisiae.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30150368 30150368]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000982 10.1074/mcp.RA118.000982]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30150368 17].
#B&eacute;guin EP, van den Eshof BL, Hoogendijk AJ, Nota B, Mertens K, Meijer AB, van den Biggelaar M,  (2018) &quot;Integrated proteomic analysis of tumor necrosis factor &alpha; and interleukin 1&beta;-induced endothelial inflammation.&quot; <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30153514 30153514]; doi: [https://dx.doi.org/10.1016/j.jprot.2018.08.011 10.1016/j.jprot.2018.08.011]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30153514 51].
#B&eacute;guin EP, van den Eshof BL, Hoogendijk AJ, Nota B, Mertens K, Meijer AB, van den Biggelaar M,  (2018) &quot;Integrated proteomic analysis of tumor necrosis factor &alpha; and interleukin 1&beta;-induced endothelial inflammation.&quot; <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30153514 30153514]; doi: [https://dx.doi.org/10.1016/j.jprot.2018.08.011 10.1016/j.jprot.2018.08.011]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30153514 51].
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#Yanovich G, Agmon H, Harel M, Sonnenblick A, Peretz T, Geiger T,  (2018) &quot;Clinical Proteomics of Breast Cancer Reveals a Novel Layer of Breast Cancer Classification.&quot; <i>Cancer Res</i> <b>78</b>(20):6001&ndash;6010; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30154156 30154156]; doi: [https://dx.doi.org/10.1158/0008-5472.CAN-18-1079 10.1158/0008-5472.CAN-18-1079]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30154156 30].
#Ten-Dom&eacute;nech I, Sim&oacute;-Alfonso EF, Herrero-Mart&iacute;nez JM,  (2018) &quot;Improving Fractionation of Human Milk Proteins through Calcium Phosphate Coprecipitation and Their Rapid Characterization by Capillary Electrophoresis.&quot; <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30156851 30156851]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00526 10.1021/acs.jproteome.8b00526]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30156851 26].
#Ten-Dom&eacute;nech I, Sim&oacute;-Alfonso EF, Herrero-Mart&iacute;nez JM,  (2018) &quot;Improving Fractionation of Human Milk Proteins through Calcium Phosphate Coprecipitation and Their Rapid Characterization by Capillary Electrophoresis.&quot; <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30156851 30156851]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00526 10.1021/acs.jproteome.8b00526]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30156851 26].
#Carnielli CM, Macedo CCS, De Rossi T, Granato DC, Rivera C, Domingues RR, Pauletti BA, Yokoo S, Heberle H, Busso-Lopes AF, Cervigne NK, Sawazaki-Calone I, Meirelles GV, Marchi FA, Telles GP, Minghim R, Ribeiro ACP, Brand&atilde;o TB, de Castro G Jr, Gonz&aacute;lez-Arriagada WA, Gomes A, Penteado F, Santos-Silva AR, Lopes MA, Rodrigues PC, Sundquist E, Salo T, da Silva SD, Alaoui-Jamali MA, Graner E, Fox JW, Coletta RD, Paes Leme AF,  (2018) &quot;Combining discovery and targeted proteomics reveals a prognostic signature in oral cancer.&quot; <i>Nat Commun</i> <b>9</b>(1):3598; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30185791 30185791]; doi: [https://dx.doi.org/10.1038/s41467-018-05696-2 10.1038/s41467-018-05696-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30185791 122].
#Carnielli CM, Macedo CCS, De Rossi T, Granato DC, Rivera C, Domingues RR, Pauletti BA, Yokoo S, Heberle H, Busso-Lopes AF, Cervigne NK, Sawazaki-Calone I, Meirelles GV, Marchi FA, Telles GP, Minghim R, Ribeiro ACP, Brand&atilde;o TB, de Castro G Jr, Gonz&aacute;lez-Arriagada WA, Gomes A, Penteado F, Santos-Silva AR, Lopes MA, Rodrigues PC, Sundquist E, Salo T, da Silva SD, Alaoui-Jamali MA, Graner E, Fox JW, Coletta RD, Paes Leme AF,  (2018) &quot;Combining discovery and targeted proteomics reveals a prognostic signature in oral cancer.&quot; <i>Nat Commun</i> <b>9</b>(1):3598; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30185791 30185791]; doi: [https://dx.doi.org/10.1038/s41467-018-05696-2 10.1038/s41467-018-05696-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30185791 122].
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#Abreha MH, Dammer EB, Ping L, Zhang T, Duong DM, Gearing M, Lah JJ, Levey AI, Seyfried NT,  (2018) &quot;Quantitative Analysis of the Brain Ubiquitylome in Alzheimer&#39;s Disease.&quot; <i>Proteomics</i> <b>18</b>(20):e1800108; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30230243 30230243]; doi: [https://dx.doi.org/10.1002/pmic.201800108 10.1002/pmic.201800108]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30230243 29].
#Finamore F, Reny JL, Malacarne S, Fontana P, Sanchez JC,  (2018) &quot;A high glucose level is associated with decreased aspirin-mediated acetylation of platelet cyclooxygenase (COX)-1 at serine 529: A pilot study.&quot; <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30240925 30240925]; doi: [https://dx.doi.org/10.1016/j.jprot.2018.09.007 10.1016/j.jprot.2018.09.007]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30240925 18].
#Finamore F, Reny JL, Malacarne S, Fontana P, Sanchez JC,  (2018) &quot;A high glucose level is associated with decreased aspirin-mediated acetylation of platelet cyclooxygenase (COX)-1 at serine 529: A pilot study.&quot; <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30240925 30240925]; doi: [https://dx.doi.org/10.1016/j.jprot.2018.09.007 10.1016/j.jprot.2018.09.007]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30240925 18].
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#Ohta S, Taniguchi T, Sato N, Hamada M, Taniguchi H, Rappsilber J,  (2019) &quot;Quantitative Proteomics of the Mitotic Chromosome Scaffold Reveals the Association of BAZ1B with Chromosomal Axes.&quot; <i>Mol Cell Proteomics</i> <b>18</b>(2):169&ndash;181; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30266865 30266865]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000923 10.1074/mcp.RA118.000923]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30266865 3].
#Sun J, Shi J, Wang Y, Chen Y, Li Y, Kong D, Chang L, Liu F, Lv Z, Zhou Y, He F, Zhang Y, Xu P,  (2018) &quot;Multiproteases Combined with High-pH Reverse-Phase Separation Strategy Verified Fourteen Missing Proteins in Human Testis Tissue.&quot; <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30280576 30280576]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00397 10.1021/acs.jproteome.8b00397]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30280576 108].
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#Sepil I, Hopkins BR, Dean R, Th&eacute;z&eacute;nas ML, Charles PD, Konietzny R, Fischer R, Kessler B, Wigby S,  (2018) &quot;Quantitative proteomics identification of seminal fluid proteins in male <i>Drosophila melanogaster</i>.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30287546 30287546]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000831 10.1074/mcp.RA118.000831]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30287546 87].
#Sepil I, Hopkins BR, Dean R, Th&eacute;z&eacute;nas ML, Charles PD, Konietzny R, Fischer R, Kessler B, Wigby S,  (2018) &quot;Quantitative proteomics identification of seminal fluid proteins in male <i>Drosophila melanogaster</i>.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30287546 30287546]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000831 10.1074/mcp.RA118.000831]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30287546 87].
Line 1,940: Line 1,961:
#El-Rami FE, Zielke RA, Wi T, Sikora AE, Unemo M,  (2018) &quot;Quantitative proteomics of the 2016 WHO&nbsp;<i>Neisseria gonorrhoeae</i>&nbsp;reference strains surveys vaccine candidates and antimicrobial resistance determinants.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30352803 30352803]; doi: [https://dx.doi.org/10.1074/mcp.RA118.001125 10.1074/mcp.RA118.001125]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30352803 8].
#El-Rami FE, Zielke RA, Wi T, Sikora AE, Unemo M,  (2018) &quot;Quantitative proteomics of the 2016 WHO&nbsp;<i>Neisseria gonorrhoeae</i>&nbsp;reference strains surveys vaccine candidates and antimicrobial resistance determinants.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30352803 30352803]; doi: [https://dx.doi.org/10.1074/mcp.RA118.001125 10.1074/mcp.RA118.001125]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30352803 8].
#Serra A, Gallart-Palau X, Park JE, Lim GGY, Lim KL, Ho HH, Tam JP, Sze SK,  (2018) &quot;Vascular Bed Molecular Profiling by Differential Systemic Decellularization In Vivo.&quot; <i>Arterioscler Thromb Vasc Biol</i> <b>38</b>(10):2396&ndash;2409; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30354219 30354219]; doi: [https://dx.doi.org/10.1161/ATVBAHA.118.311552 10.1161/ATVBAHA.118.311552]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30354219 16].
#Serra A, Gallart-Palau X, Park JE, Lim GGY, Lim KL, Ho HH, Tam JP, Sze SK,  (2018) &quot;Vascular Bed Molecular Profiling by Differential Systemic Decellularization In Vivo.&quot; <i>Arterioscler Thromb Vasc Biol</i> <b>38</b>(10):2396&ndash;2409; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30354219 30354219]; doi: [https://dx.doi.org/10.1161/ATVBAHA.118.311552 10.1161/ATVBAHA.118.311552]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30354219 16].
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#Zhao Y, Wilmarth PA, Cheng C, Limi S, Fowler VM, Zheng D, David LL, Cvekl A,  (2019) &quot;Proteome-transcriptome analysis and proteome remodeling in mouse lens epithelium and fibers.&quot; <i>Exp Eye Res</i> <b>179</b>:32&ndash;46; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30359574 30359574]; doi: [https://dx.doi.org/10.1016/j.exer.2018.10.011 10.1016/j.exer.2018.10.011]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30359574 3].
#Magagnotti C, Zerbini G, Fermo I, Carletti RM, Bonfanti R, Vallone F, Andolfo A,  (2018) &quot;Identification of nephropathy predictors in urine from children with a recent diagnosis of type 1 diabetes.&quot; <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30366120 30366120]; doi: [https://dx.doi.org/10.1016/j.jprot.2018.10.010 10.1016/j.jprot.2018.10.010]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30366120 51].
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#Gontan C, Mira-Bontenbal H, Magaraki A, Dupont C, Barakat TS, Rentmeester E, Demmers J, Gribnau J,  (2018) &quot;REX1 is the critical target of RNF12 in imprinted X chromosome inactivation in mice.&quot; <i>Nat Commun</i> <b>9</b>(1):4752; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30420655 30420655]; doi: [https://dx.doi.org/10.1038/s41467-018-07060-w 10.1038/s41467-018-07060-w]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30420655 120].
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#Gfeller D, Guillaume P, Michaux J, Pak HS, Daniel RT, Racle J, Coukos G, Bassani-Sternberg M,  (2018) &quot;The Length Distribution and Multiple Specificity of Naturally Presented HLA-I Ligands.&quot; <i>J Immunol</i> <b>201</b>(12):3705&ndash;3716; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30429286 30429286]; doi: [https://dx.doi.org/10.4049/jimmunol.1800914 10.4049/jimmunol.1800914]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30429286 11].
#Bigenzahn JW, Collu GM, Kartnig F, Pieraks M, Vladimer GI, Heinz LX, Sedlyarov V, Schischlik F, Fauster A, Rebsamen M, Parapatics K, Blomen VA, M&uuml;ller AC, Winter GE, Kralovics R, Brummelkamp TR, Mlodzik M, Superti-Furga G,  (2018) &quot;LZTR1 is a regulator of RAS ubiquitination and signaling.&quot; <i>Science</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30442766 30442766]; doi: [https://dx.doi.org/10.1126/science.aap8210 10.1126/science.aap8210]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30442766 20].
#Bigenzahn JW, Collu GM, Kartnig F, Pieraks M, Vladimer GI, Heinz LX, Sedlyarov V, Schischlik F, Fauster A, Rebsamen M, Parapatics K, Blomen VA, M&uuml;ller AC, Winter GE, Kralovics R, Brummelkamp TR, Mlodzik M, Superti-Furga G,  (2018) &quot;LZTR1 is a regulator of RAS ubiquitination and signaling.&quot; <i>Science</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30442766 30442766]; doi: [https://dx.doi.org/10.1126/science.aap8210 10.1126/science.aap8210]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30442766 20].
#Cominetti O, N&uacute;&ntilde;ez Galindo A, Corth&eacute;sy J, Valsesia A, Irincheeva I, Kussmann M, Saris WHM, Astrup A, McPherson R, Harper ME, Dent R, Hager J, Dayon L,  (2018) &quot;Obesity shows preserved plasma proteome in large independent clinical cohorts.&quot; <i>Sci Rep</i> <b>8</b>(1):16981; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30451909 30451909]; doi: [https://dx.doi.org/10.1038/s41598-018-35321-7 10.1038/s41598-018-35321-7]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30451909 318].
#Cominetti O, N&uacute;&ntilde;ez Galindo A, Corth&eacute;sy J, Valsesia A, Irincheeva I, Kussmann M, Saris WHM, Astrup A, McPherson R, Harper ME, Dent R, Hager J, Dayon L,  (2018) &quot;Obesity shows preserved plasma proteome in large independent clinical cohorts.&quot; <i>Sci Rep</i> <b>8</b>(1):16981; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30451909 30451909]; doi: [https://dx.doi.org/10.1038/s41598-018-35321-7 10.1038/s41598-018-35321-7]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30451909 318].
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#Narzt MS, Nagelreiter IM, Oskolkova O, Bochkov VN, Latreille J, Fedorova M, Ni Z, Sialana FJ, Lubec G, Filzwieser M, Laggner M, Bilban M, Mildner M, Tschachler E, Grillari J, Gruber F,  (2019) &quot;A novel role for NUPR1 in the keratinocyte stress response to UV oxidized phospholipids.&quot; <i>Redox Biol</i> <b>20</b>:467&ndash;482; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30466060 30466060]; doi: [https://dx.doi.org/10.1016/j.redox.2018.11.006 10.1016/j.redox.2018.11.006]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30466060 18].
#Cavanagh JP, Pain M, Askarian F, Bruun JA, Urbarova I, Wai SN, Schmidt F, Johannessen M,  (2018) &quot;Comparative exoproteome profiling of an invasive and a commensal Staphylococcus haemolyticus isolate.&quot; <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30472255 30472255]; doi: [https://dx.doi.org/10.1016/j.jprot.2018.11.013 10.1016/j.jprot.2018.11.013]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30472255 12].
#Cavanagh JP, Pain M, Askarian F, Bruun JA, Urbarova I, Wai SN, Schmidt F, Johannessen M,  (2018) &quot;Comparative exoproteome profiling of an invasive and a commensal Staphylococcus haemolyticus isolate.&quot; <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30472255 30472255]; doi: [https://dx.doi.org/10.1016/j.jprot.2018.11.013 10.1016/j.jprot.2018.11.013]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30472255 12].
#Zhu J, Garrigues L, Van den Toorn H, Stahl B, Heck AJR,  (2018) &quot;Discovery and quantification of non-human proteins in human milk.&quot; <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30489082 30489082]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00550 10.1021/acs.jproteome.8b00550]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30489082 37].
#Zhu J, Garrigues L, Van den Toorn H, Stahl B, Heck AJR,  (2018) &quot;Discovery and quantification of non-human proteins in human milk.&quot; <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30489082 30489082]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00550 10.1021/acs.jproteome.8b00550]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30489082 37].
Line 1,959: Line 1,984:
#Roustan V, Weckwerth W,  (2018) &quot;Quantitative Phosphoproteomic and System-Level Analysis of TOR Inhibition Unravel Distinct Organellar Acclimation in <i>Chlamydomonas reinhardtii</i>.&quot; <i>Front Plant Sci</i> <b>9</b>:1590; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30546371 30546371]; doi: [https://dx.doi.org/10.3389/fpls.2018.01590 10.3389/fpls.2018.01590]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30546371 54].
#Roustan V, Weckwerth W,  (2018) &quot;Quantitative Phosphoproteomic and System-Level Analysis of TOR Inhibition Unravel Distinct Organellar Acclimation in <i>Chlamydomonas reinhardtii</i>.&quot; <i>Front Plant Sci</i> <b>9</b>:1590; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30546371 30546371]; doi: [https://dx.doi.org/10.3389/fpls.2018.01590 10.3389/fpls.2018.01590]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30546371 54].
#Yao Z, Jia X, Megger DA, Chen J, Liu Y, Li J, Sitek B, Yuan Z,  (2018) &quot;Label-free Proteomic Analysis of Exosomes Secreted from THP-1-derived Macrophages Treated with IFN-&alpha; Identifies Antiviral Proteins Enriched in Exosomes.&quot; <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30550287 30550287]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00514 10.1021/acs.jproteome.8b00514]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30550287 23].
#Yao Z, Jia X, Megger DA, Chen J, Liu Y, Li J, Sitek B, Yuan Z,  (2018) &quot;Label-free Proteomic Analysis of Exosomes Secreted from THP-1-derived Macrophages Treated with IFN-&alpha; Identifies Antiviral Proteins Enriched in Exosomes.&quot; <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30550287 30550287]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00514 10.1021/acs.jproteome.8b00514]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30550287 23].
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#Alves Feliciano C, Douch&eacute; T, Giai Gianetto Q, Matondo M, Martin-Verstraete I, Dupuy B,  (2019) &quot;CotL, a new morphogenetic spore coat protein of Clostridium difficile.&quot; <i>Environ Microbiol</i> <b>21</b>(3):984&ndash;1003; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30556639 30556639]; doi: [https://dx.doi.org/10.1111/1462-2920.14505 10.1111/1462-2920.14505]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30556639 6].
#Yelamanchi SD, Tyagi A, Mohanty V, Dutta P, Korbonits M, Chavan S, Advani J, Madugundu AK, Dey G, Datta KK, Rajyalakshmi M, Sahasrabuddhe NA, Chaturvedi A, Kumar A, Das AA, Ghosh D, Jogdand GM, Nair HH, Saini K, Panchal M, Sarvaiya MA, Mohanraj SS, Sengupta N, Saxena P, Subramani PA, Kumar P, Akkali R, Reshma SV, Santhosh RS, Rastogi S, Kumar S, Ghosh SK, Irlapati VK, Srinivasan A, Radotra BD, Mathur PP, Wong GW, Satishchandra P, Chatterjee A, Gowda H, Bhansali A, Pandey A, Shankar SK, Mahadevan A, Prasad TSK,  (2018) &quot;Proteomic Analysis of the Human Anterior Pituitary Gland.&quot; <i>OMICS</i> <b>22</b>(12):759&ndash;769; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30571610 30571610]; doi: [https://dx.doi.org/10.1089/omi.2018.0160 10.1089/omi.2018.0160]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30571610 3].
#Yelamanchi SD, Tyagi A, Mohanty V, Dutta P, Korbonits M, Chavan S, Advani J, Madugundu AK, Dey G, Datta KK, Rajyalakshmi M, Sahasrabuddhe NA, Chaturvedi A, Kumar A, Das AA, Ghosh D, Jogdand GM, Nair HH, Saini K, Panchal M, Sarvaiya MA, Mohanraj SS, Sengupta N, Saxena P, Subramani PA, Kumar P, Akkali R, Reshma SV, Santhosh RS, Rastogi S, Kumar S, Ghosh SK, Irlapati VK, Srinivasan A, Radotra BD, Mathur PP, Wong GW, Satishchandra P, Chatterjee A, Gowda H, Bhansali A, Pandey A, Shankar SK, Mahadevan A, Prasad TSK,  (2018) &quot;Proteomic Analysis of the Human Anterior Pituitary Gland.&quot; <i>OMICS</i> <b>22</b>(12):759&ndash;769; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30571610 30571610]; doi: [https://dx.doi.org/10.1089/omi.2018.0160 10.1089/omi.2018.0160]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30571610 3].
#Nanaware PP, Jurewicz MM, Leszyk J, Shaffer SA, Stern LJ,  (2018) &quot;HLA-DO modulates the diversity of the MHC-II self-peptidome.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30573663 30573663]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000956 10.1074/mcp.RA118.000956]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30573663 26].
#Nanaware PP, Jurewicz MM, Leszyk J, Shaffer SA, Stern LJ,  (2018) &quot;HLA-DO modulates the diversity of the MHC-II self-peptidome.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30573663 30573663]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000956 10.1074/mcp.RA118.000956]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30573663 26].
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#Aloui C, Barlier C, Claverol S, Fagan J, Awounou D, Tavernier E, Guyotat D, Hamzeh-Cognasse H, Cognasse F, Garraud O, Laradi S,  (2019) &quot;Differential protein expression of blood platelet components associated with adverse transfusion reactions.&quot; <i>J Proteomics</i> <b>194</b>:25&ndash;36; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30590131 30590131]; doi: [https://dx.doi.org/10.1016/j.jprot.2018.12.019 10.1016/j.jprot.2018.12.019]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30590131 48].
#Zhou Z, Chen Y, Jin M, He J, Guli A, Yan C, Ding S,  (2018) &quot;Comprehensive analysis of lysine acetylome reveals a site-specific pattern in rapamycin-induced autophagy.&quot; <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30592415 30592415]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00533 10.1021/acs.jproteome.8b00533]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30592415 6].
#Zhou Z, Chen Y, Jin M, He J, Guli A, Yan C, Ding S,  (2018) &quot;Comprehensive analysis of lysine acetylome reveals a site-specific pattern in rapamycin-induced autophagy.&quot; <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30592415 30592415]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00533 10.1021/acs.jproteome.8b00533]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30592415 6].
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#Merlos Rodrigo MA, Buchtelova H, de Los Rios V, Casal JI, Eckschlager T, Hrabeta J, Belhajova M, Heger Z, Adam V,  (2019) &quot;Proteomic Signature of Neuroblastoma Cells UKF-NB-4 Reveals Key Role of Lysosomal Sequestration and the Proteasome Complex in Acquiring Chemoresistance to Cisplatin.&quot; <i>J Proteome Res</i> <b>18</b>(3):1255&ndash;1263; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30592607 30592607]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00867 10.1021/acs.jproteome.8b00867]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30592607 9].
#Dunn J, Ferluga S, Sharma V, Futschik M, Hilton DA, Adams CL, Lasonder E, Hannemann OC,  (2018) &quot;Proteomic analysis discovers the differential expression of novel proteins and phosphoproteins in meningioma including NEK9, HK2 and SET and deregulation of RNA metabolism.&quot; <i>EBioMedicine</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30594554 30594554]; doi: [https://dx.doi.org/10.1016/j.ebiom.2018.12.048 10.1016/j.ebiom.2018.12.048]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30594554 78].
#Dunn J, Ferluga S, Sharma V, Futschik M, Hilton DA, Adams CL, Lasonder E, Hannemann OC,  (2018) &quot;Proteomic analysis discovers the differential expression of novel proteins and phosphoproteins in meningioma including NEK9, HK2 and SET and deregulation of RNA metabolism.&quot; <i>EBioMedicine</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30594554 30594554]; doi: [https://dx.doi.org/10.1016/j.ebiom.2018.12.048 10.1016/j.ebiom.2018.12.048]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30594554 78].
#&#x17B;ylicz JJ, Bousard A, &#x17D;umer K, Dossin F, Mohammad E, da Rocha ST, Schwalb B, Syx L, Dingli F, Loew D, Cramer P, Heard E,  (2019) &quot;The Implication of Early Chromatin Changes in X Chromosome Inactivation.&quot; <i>Cell</i> <b>176</b>(1-2):182&ndash;197.e23; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30595450 30595450]; doi: [https://dx.doi.org/10.1016/j.cell.2018.11.041 10.1016/j.cell.2018.11.041]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30595450 10].
#&#x17B;ylicz JJ, Bousard A, &#x17D;umer K, Dossin F, Mohammad E, da Rocha ST, Schwalb B, Syx L, Dingli F, Loew D, Cramer P, Heard E,  (2019) &quot;The Implication of Early Chromatin Changes in X Chromosome Inactivation.&quot; <i>Cell</i> <b>176</b>(1-2):182&ndash;197.e23; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30595450 30595450]; doi: [https://dx.doi.org/10.1016/j.cell.2018.11.041 10.1016/j.cell.2018.11.041]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30595450 10].
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#Liebelt F, Sebastian RM, Moore CL, Mulder MPC, Ovaa H, Shoulders MD, Vertegaal ACO,  (2019) &quot;SUMOylation and the HSF1-Regulated Chaperone Network Converge to Promote Proteostasis in Response to Heat Shock.&quot; <i>Cell Rep</i> <b>26</b>(1):236&ndash;249.e4; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30605679 30605679]; doi: [https://dx.doi.org/10.1016/j.celrep.2018.12.027 10.1016/j.celrep.2018.12.027]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30605679 57].
#Queiroz RML, Smith T, Villanueva E, Marti-Solano M, Monti M, Pizzinga M, Mirea DM, Ramakrishna M, Harvey RF, Dezi V, Thomas GH, Willis AE, Lilley KS,  (2019) &quot;Comprehensive identification of RNA-protein interactions in any organism using orthogonal organic phase separation (OOPS).&quot; <i>Nat Biotechnol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30607034 30607034]; doi: [https://dx.doi.org/10.1038/s41587-018-0001-2 10.1038/s41587-018-0001-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30607034 106].
#Queiroz RML, Smith T, Villanueva E, Marti-Solano M, Monti M, Pizzinga M, Mirea DM, Ramakrishna M, Harvey RF, Dezi V, Thomas GH, Willis AE, Lilley KS,  (2019) &quot;Comprehensive identification of RNA-protein interactions in any organism using orthogonal organic phase separation (OOPS).&quot; <i>Nat Biotechnol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30607034 30607034]; doi: [https://dx.doi.org/10.1038/s41587-018-0001-2 10.1038/s41587-018-0001-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30607034 106].
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#Orre LM, Vesterlund M, Pan Y, Arslan T, Zhu Y, Fernandez Woodbridge A, Frings O, Fredlund E, Lehti&ouml; J,  (2019) &quot;SubCellBarCode: Proteome-wide Mapping of Protein Localization and Relocalization.&quot; <i>Mol Cell</i> <b>73</b>(1):166&ndash;182.e7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30609389 30609389]; doi: [https://dx.doi.org/10.1016/j.molcel.2018.11.035 10.1016/j.molcel.2018.11.035]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30609389 4].
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#Orre LM, Vesterlund M, Pan Y, Arslan T, Zhu Y, Fernandez Woodbridge A, Frings O, Fredlund E, Lehti&ouml; J,  (2019) &quot;SubCellBarCode: Proteome-wide Mapping of Protein Localization and Relocalization.&quot; <i>Mol Cell</i> <b>73</b>(1):166&ndash;182.e7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30609389 30609389]; doi: [https://dx.doi.org/10.1016/j.molcel.2018.11.035 10.1016/j.molcel.2018.11.035]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30609389 18].
#Landsberg CD, Megger DA, Hotter D, R&uuml;ckborn MU, Eilbrecht M, Rashidi-Alavijeh J, Howe S, Heinrichs S, Sauter D, Sitek B, Le-Trilling VTK, Trilling M,  (2018) &quot;A Mass Spectrometry-Based Profiling of Interactomes of Viral DDB1- and Cullin Ubiquitin Ligase-Binding Proteins Reveals NF-&kappa;B Inhibitory Activity of the HIV-2-Encoded Vpx.&quot; <i>Front Immunol</i> <b>9</b>:2978; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30619335 30619335]; doi: [https://dx.doi.org/10.3389/fimmu.2018.02978 10.3389/fimmu.2018.02978]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30619335 48].
#Landsberg CD, Megger DA, Hotter D, R&uuml;ckborn MU, Eilbrecht M, Rashidi-Alavijeh J, Howe S, Heinrichs S, Sauter D, Sitek B, Le-Trilling VTK, Trilling M,  (2018) &quot;A Mass Spectrometry-Based Profiling of Interactomes of Viral DDB1- and Cullin Ubiquitin Ligase-Binding Proteins Reveals NF-&kappa;B Inhibitory Activity of the HIV-2-Encoded Vpx.&quot; <i>Front Immunol</i> <b>9</b>:2978; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30619335 30619335]; doi: [https://dx.doi.org/10.3389/fimmu.2018.02978 10.3389/fimmu.2018.02978]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30619335 48].
#Yang H, Li Y, Zhao M, Wu F, Wang X, Xiao W, Wang Y, Zhang J, Wang F, Xu F, Zeng WF, Overall CM, He SM, Chi H, Xu P,  (2019) &quot;Precision <i>de novo</i> peptide sequencing using mirror proteases of Ac-LysargiNase and trypsin for large-scale proteomics.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30622160 30622160]; doi: [https://dx.doi.org/10.1074/mcp.TIR118.000918 10.1074/mcp.TIR118.000918]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30622160 2].
#Yang H, Li Y, Zhao M, Wu F, Wang X, Xiao W, Wang Y, Zhang J, Wang F, Xu F, Zeng WF, Overall CM, He SM, Chi H, Xu P,  (2019) &quot;Precision <i>de novo</i> peptide sequencing using mirror proteases of Ac-LysargiNase and trypsin for large-scale proteomics.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30622160 30622160]; doi: [https://dx.doi.org/10.1074/mcp.TIR118.000918 10.1074/mcp.TIR118.000918]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30622160 2].
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#Chen D, Ludwig K, Krokhin OV, Spicer V, Yang Z, Shen X, Hummon AB, Sun L,  (2019) &quot;Capillary zone electrophoresis-tandem mass spectrometry for large-scale phosphoproteomics with the production of over 11000 phosphopeptides from the colon carcinoma HCT116 cell line.&quot; <i>Anal Chem</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30624053 30624053]; doi: [https://dx.doi.org/10.1021/acs.analchem.8b04770 10.1021/acs.analchem.8b04770]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30624053 40].
#Chen Z, Lei C, Wang C, Li N, Srivastava M, Tang M, Zhang H, Choi JM, Jung SY, Qin J, Chen J,  (2019) &quot;Global phosphoproteomic analysis reveals ARMC10 as an AMPK substrate that regulates mitochondrial dynamics.&quot; <i>Nat Commun</i> <b>10</b>(1):104; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30631047 30631047]; doi: [https://dx.doi.org/10.1038/s41467-018-08004-0 10.1038/s41467-018-08004-0]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30631047 30].
#Chen Z, Lei C, Wang C, Li N, Srivastava M, Tang M, Zhang H, Choi JM, Jung SY, Qin J, Chen J,  (2019) &quot;Global phosphoproteomic analysis reveals ARMC10 as an AMPK substrate that regulates mitochondrial dynamics.&quot; <i>Nat Commun</i> <b>10</b>(1):104; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30631047 30631047]; doi: [https://dx.doi.org/10.1038/s41467-018-08004-0 10.1038/s41467-018-08004-0]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30631047 30].
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#Pfaff F, H&auml;gglund S, Zoli M, Blaise-Boisseau S, Laloy E, Koethe S, Z&uuml;hlke D, Riedel K, Zientara S, Bakkali-Kassimi L, Valarcher JF, H&ouml;per D, Beer M, Eschbaumer M,  (2019) &quot;Proteogenomics Uncovers Critical Elements of Host Response in Bovine Soft Palate Epithelial Cells Following In Vitro Infection with Foot-And-Mouth Disease Virus.&quot; <i>Viruses</i> <b>11</b>(1):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30642035 30642035]; doi: [https://dx.doi.org/10.3390/v11010053 10.3390/v11010053]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30642035 70].
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#Hansen M, Peltier J, Killy B, Amin B, Bodendorfer B, H&auml;rtlova A, Uebel S, Bosmann M, Hofmann J, B&uuml;ttner C, Ekici AB, Kuttke M, Franzyk H, Foged C, Beer-Hammer S, Schabbauer G, Trost M, Lang R,  (2019) &quot;Macrophage phosphoproteome analysis reveals MINCLE-dependent and -independent mycobacterial cord factor signaling.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30635358 30635358]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000929 10.1074/mcp.RA118.000929]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30635358 72].
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#Tripathi SK, V&auml;likangas T, Shetty A, Khan MM, Moulder R, Bhosale SD, Komsi E, Salo V, De Albuquerque RS, Rasool O, Galande S, Elo LL, Lahesmaa R,  (2019) &quot;Quantitative Proteomics Reveals the Dynamic Protein Landscape during Initiation of Human Th17 Cell Polarization.&quot; <i>iScience</i> <b>11</b>:334&ndash;355; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30641411 30641411]; doi: [https://dx.doi.org/10.1016/j.isci.2018.12.020 10.1016/j.isci.2018.12.020]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30641411 75].
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#Pfaff F, H&auml;gglund S, Zoli M, Blaise-Boisseau S, Laloy E, Koethe S, Z&uuml;hlke D, Riedel K, Zientara S, Bakkali-Kassimi L, Valarcher JF, H&ouml;per D, Beer M, Eschbaumer M,  (2019) &quot;Proteogenomics Uncovers Critical Elements of Host Response in Bovine Soft Palate Epithelial Cells Following In Vitro Infection with Foot-And-Mouth Disease Virus.&quot; <i>Viruses</i> <b>11</b>(1):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30642035 30642035]; doi: [https://dx.doi.org/10.3390/v11010053 10.3390/v11010053]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30642035 110].
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#Kosack L, Wingelhofer B, Popa A, Orlova A, Agerer B, Vilagos B, Majek P, Parapatics K, Lercher A, Ringler A, Klughammer J, Smyth M, Khamina K, Baazim H, de Araujo ED, Rosa DA, Park J, Tin G, Ahmar S, Gunning PT, Bock C, Siddle HV, Woods GM, Kubicek S, Murchison EP, Bennett KL, Moriggl R, Bergthaler A,  (2019) &quot;The ERBB-STAT3 Axis Drives Tasmanian Devil Facial Tumor Disease.&quot; <i>Cancer Cell</i> <b>35</b>(1):125&ndash;139.e9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30645971 30645971]; doi: [https://dx.doi.org/10.1016/j.ccell.2018.11.018 10.1016/j.ccell.2018.11.018]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30645971 20].
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#Liu Z, Lv J, Zhang Z, Li H, Yang B, Chen W, Dai X, Li X, Yang S, Liu L, Ou L, Ma Y, Zou X,  (2019) &quot;Integrative Transcriptome and Proteome Analysis Identifies Major Metabolic Pathways Involved in Pepper Fruit Development.&quot; <i>J Proteome Res</i> <b>18</b>(3):982&ndash;994; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30650966 30650966]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00673 10.1021/acs.jproteome.8b00673]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30650966 24].
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#Stewart PA, Welsh EA, Slebos RJC, Fang B, Izumi V, Chambers M, Zhang G, Cen L, Pettersson F, Zhang Y, Chen Z, Cheng CH, Thapa R, Thompson Z, Fellows KM, Francis JM, Saller JJ, Mesa T, Zhang C, Yoder S, DeNicola GM, Beg AA, Boyle TA, Teer JK, Ann Chen Y, Koomen JM, Eschrich SA, Haura EB,  (2019) &quot;Proteogenomic landscape of squamous cell lung cancer.&quot; <i>Nat Commun</i> <b>10</b>(1):3578; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31395880 31395880]; doi: [https://dx.doi.org/10.1038/s41467-019-11452-x 10.1038/s41467-019-11452-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31395880 58].
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#Olson MG, Widner RE, Jorgenson LM, Lawrence A, Lagundzin D, Woods NT, Ouellette SP, Rucks EA,  (2019) &quot;Proximity Labeling To Map Host-Pathogen Interactions at the Membrane of a Bacterium-Containing Vacuole in Chlamydia trachomatis-Infected Human Cells.&quot; <i>Infect Immun</i> <b>87</b>(11):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31405957 31405957]; doi: [https://dx.doi.org/10.1128/IAI.00537-19 10.1128/IAI.00537-19]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31405957 117].
 +
#Brophy RH, Cai L, Duan X, Zhang Q, Townsend RR, Nunley RM, Guilak F, Rai MF,  (2019) &quot;Proteomic analysis of synovial fluid identifies periostin as a biomarker for anterior cruciate ligament injury.&quot; <i>Osteoarthritis Cartilage</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31430535 31430535]; doi: [https://dx.doi.org/10.1016/j.joca.2019.08.002 10.1016/j.joca.2019.08.002]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31430535 11].
 +
#Ong JWJ, Tan KS, Ler SG, Gunaratne J, Choi H, Seet JE, Chow VT,  (2019) &quot;Insights into Early Recovery from Influenza Pneumonia by Spatial and Temporal Quantification of Putative Lung Regenerating Cells and by Lung Proteomics.&quot; <i>Cells</i> <b>8</b>(9):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31455003 31455003]; doi: [https://dx.doi.org/10.3390/cells8090975 10.3390/cells8090975]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31455003 1].
 +
#Denes BJ, Bolton C, Illsley CS, Kok WL, Walker JV, Poetsch A, Tredwin C, Kiliaridis S, Hu B,  (2019) &quot;Notch Coordinates Periodontal Ligament Maturation through Regulating Lamin A.&quot; <i>J Dent Res</i> <b></b>:22034519871448; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31461625 31461625]; doi: [https://dx.doi.org/10.1177/0022034519871448 10.1177/0022034519871448]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31461625 1].
 +
#Schulte F, Hasturk H, Hardt M,  (2019) &quot;Mapping Relative Differences in Human Salivary Gland Secretions by Dried Saliva Spot Sampling and nanoLC-MS/MS.&quot; <i>Proteomics</i> <b></b>:e1900023; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31476108 31476108]; doi: [https://dx.doi.org/10.1002/pmic.201900023 10.1002/pmic.201900023]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31476108 36].
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#Defenouill&egrave;re Q, Verraes A, Laussel C, Friedrich A, Schacherer J, L&eacute;on S,  (2019) &quot;The induction of HAD-like phosphatases by multiple signaling pathways confers resistance to the metabolic inhibitor 2-deoxyglucose.&quot; <i>Sci Signal</i> <b>12</b>(597):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31481524 31481524]; doi: [https://dx.doi.org/10.1126/scisignal.aaw8000 10.1126/scisignal.aaw8000]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31481524 6].
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#Gao Y, Lee H, Kwon OK, Tan M, Kim KT, Lee S,  (2019) &quot;Global Proteomic Analysis of Lysine Succinylation in Zebrafish (<i>Danio rerio</i>).&quot; <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31483678 31483678]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00462 10.1021/acs.jproteome.9b00462]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31483678 4].
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#Al Ahmad A, Paffrath V, Clima R, Busch JF, Rabien A, Kilic E, Villegas S, Timmermann B, Attimonelli M, Jung K, Meierhofer D,  (2019) &quot;Papillary Renal Cell Carcinomas Rewire Glutathione Metabolism and Are Deficient in Both Anabolic Glucose Synthesis and Oxidative Phosphorylation.&quot; <i>Cancers (Basel)</i> <b>11</b>(9):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31484429 31484429]; doi: [https://dx.doi.org/10.3390/cancers11091298 10.3390/cancers11091298]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31484429 33].
 +
#Liebelt F, Jansen NS, Kumar S, Gracheva E, Claessens LA, Verlaan-de Vries M, Willemstein E, Vertegaal ACO,  (2019) &quot;The poly-SUMO2/3 protease SENP6 enables assembly of the constitutive centromere-associated network by group deSUMOylation.&quot; <i>Nat Commun</i> <b>10</b>(1):3987; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31485003 31485003]; doi: [https://dx.doi.org/10.1038/s41467-019-11773-x 10.1038/s41467-019-11773-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31485003 46].
 +
#Sleat DE, Wiseman JA, El-Banna M, Zheng H, Zhao C, Soherwardy A, Moore DF, Lobel P,  (2019) &quot;Analysis of brain and cerebrospinal fluid from mouse models of the three major forms of neuronal ceroid lipofuscinosis reveals changes in the lysosomal proteome.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31501224 31501224]; doi: [https://dx.doi.org/10.1074/mcp.RA119.001587 10.1074/mcp.RA119.001587]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31501224 132].
 +
#Wilson R, Gundamaraju R, Vemuri R, Angelucci C, Geraghty D, Gueven N, Eri RD,  (2019) &quot;Identification of Key Pro-Survival Proteins in Isolated Colonic Goblet Cells of Winnie, a Murine Model of Spontaneous Colitis.&quot; <i>Inflamm Bowel Dis</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31504521 31504521]; doi: [https://dx.doi.org/10.1093/ibd/izz179 10.1093/ibd/izz179]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31504521 6].
 +
#Piano D, Cocco E, Guadalupi G, Kalaji HM, Kirkpatrick J, Farci D,  (2019) &quot;Characterization under quasi-native conditions of the capsanthin/capsorubin synthase from Capsicum annuum L.&quot; <i>Plant Physiol Biochem</i> <b>143</b>:165&ndash;175; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31505449 31505449]; doi: [https://dx.doi.org/10.1016/j.plaphy.2019.09.007 10.1016/j.plaphy.2019.09.007]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31505449 4].
 +
#Dou M, Clair G, Tsai CF, Xu K, Chrisler WB, Sontag RL, Zhao R, Moore RJ, Liu T, Pasa-Tolic L, Smith RD, Shi T, Adkins JN, Qian WJ, Kelly RT, Ansong C, Zhu Y,  (2019) &quot;High-Throughput Single Cell Proteomics Enabled by Multiplex Isobaric Labeling in a Nanodroplet Sample Preparation Platform.&quot; <i>Anal Chem</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31509397 31509397]; doi: [https://dx.doi.org/10.1021/acs.analchem.9b03349 10.1021/acs.analchem.9b03349]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31509397 20].
 +
#Lugli F, Di Rocco G, Vazzana A, Genovese F, Pinetti D, Cilli E, Carile MC, Silvestrini S, Gabanini G, Arrighi S, Buti L, Bortolini E, Cipriani A, Figus C, Marciani G, Oxilia G, Romandini M, Sorrentino R, Sola M, Benazzi S,  (2019) &quot;Enamel peptides reveal the sex of the Late Antique &#39;Lovers of Modena&#39;.&quot; <i>Sci Rep</i> <b>9</b>(1):13130; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31511583 31511583]; doi: [https://dx.doi.org/10.1038/s41598-019-49562-7 10.1038/s41598-019-49562-7]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31511583 16].
 +
#Gnanasundram SV, Kos-Braun IC, Ko&scaron; M,  (2019) &quot;At least two molecules of the RNA helicase Has1 are simultaneously present in pre-ribosomes during ribosome biogenesis.&quot; <i>Nucleic Acids Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31511893 31511893]; doi: [https://dx.doi.org/10.1093/nar/gkz767 10.1093/nar/gkz767]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31511893 17].
 +
#Kampstra ASB, van Heemst J, Janssen GM, de Ru AH, van Lummel M, van Veelen PA, Toes REM,  (2019) &quot;Ligandomes obtained from different HLA-class II-molecules are homologous for N- and C-terminal residues outside the peptide-binding cleft.&quot; <i>Immunogenetics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31520135 31520135]; doi: [https://dx.doi.org/10.1007/s00251-019-01129-6 10.1007/s00251-019-01129-6]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31520135 77].
 +
#Sj&ouml;din S, Brinkmalm G, &Ouml;hrfelt A, Parnetti L, Paciotti S, Hansson O, Hardy J, Blennow K, Zetterberg H, Brinkmalm A,  (2019) &quot;Endo-lysosomal proteins and ubiquitin CSF concentrations in Alzheimer&#39;s and Parkinson&#39;s disease.&quot; <i>Alzheimers Res Ther</i> <b>11</b>(1):82; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31521194 31521194]; doi: [https://dx.doi.org/10.1186/s13195-019-0533-9 10.1186/s13195-019-0533-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31521194 27].
 +
#Israel S, Ernst M, Psathaki OE, Drexler HCA, Casser E, Suzuki Y, Makalowski W, Boiani M, Fuellen G, Taher L,  (2019) &quot;An integrated genome-wide multi-omics analysis of gene expression dynamics in the preimplantation mouse embryo.&quot; <i>Sci Rep</i> <b>9</b>(1):13356; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31527703 31527703]; doi: [https://dx.doi.org/10.1038/s41598-019-49817-3 10.1038/s41598-019-49817-3]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31527703 14].
 +
#Uckeley ZM, Moeller R, K&uuml;hn LI, Nilsson E, Robens C, Lasswitz L, Lindqvist R, Lenman A, Passos V, Voss Y, Sommerauer C, Kampmann M, Goffinet C, Meissner F, &Ouml;verby AK, Lozach PY, Gerold G,  (2019) &quot;Quantitative proteomics of Uukuniemi virus - host cell interactions reveals GBF1 as proviral host factor for phleboviruses.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31570497 31570497]; doi: [https://dx.doi.org/10.1074/mcp.RA119.001631 10.1074/mcp.RA119.001631]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31570497 20].
 +
#Kawahara R, Recuero S, Nogueira FCS, Domont GB, Leite KRM, Srougi M, Thaysen-Andersen M, Palmisano G,  (2019) &quot;Tissue Proteome Signatures Associated with Five Grades of Prostate Cancer and Benign Prostatic Hyperplasia.&quot; <i>Proteomics</i> <b></b>:e1900174; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31576646 31576646]; doi: [https://dx.doi.org/10.1002/pmic.201900174 10.1002/pmic.201900174]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31576646 5].
 +
#Vel&aacute;squez E, Martins de Souza D, Vel&aacute;squez I, Carneiro GRA, Schmitt A, Falkai P, Domont GB, Nogueira FCS,  (2019) &quot;QUANTITATIVE SUBCELLULAR PROTEOMICS OF THE ORBITOFRONTAL CORTEX OF SCHIZOPHRENIA PATIENTS.&quot; <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31581776 31581776]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00398 10.1021/acs.jproteome.9b00398]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31581776 46].
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#Lundby A, Franciosa G, Emdal KB, Refsgaard JC, Gnosa SP, Bekker-Jensen DB, Secher A, Maurya SR, Paul I, Mendez BL, Kelstrup CD, Francavilla C, Kveiborg M, Montoya G, Jensen LJ, Olsen JV,  (2019) &quot;Oncogenic Mutations Rewire Signaling Pathways by Switching Protein Recruitment to Phosphotyrosine Sites.&quot; <i>Cell</i> <b>179</b>(2):543&ndash;560.e26; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31585087 31585087]; doi: [https://dx.doi.org/10.1016/j.cell.2019.09.008 10.1016/j.cell.2019.09.008]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31585087 255].
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#Bichmann L, Nelde A, Ghosh M, Heumos L, Mohr C, Peltzer A, Kuchenbecker L, Sachsenberg T, Walz JS, Stevanovi&#x107; S, Rammensee HG, Kohlbacher O,  (2019) &quot;MHCquant: Automated and reproducible data analysis for immunopeptidomics.&quot; <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31589052 31589052]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00313 10.1021/acs.jproteome.9b00313]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31589052 38].
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#Lin Z, Zhang Y, Pan H, Hao P, Li S, He Y, Yang H, Liu S, Ren Y,  (2019) &quot;An alternative strategy to explore missing proteins with low molecular weight.&quot; <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31592669 31592669]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00353 10.1021/acs.jproteome.9b00353]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31592669 3].
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#Noya SB, Colameo D, Br&uuml;ning F, Spinnler A, Mircsof D, Opitz L, Mann M, Tyagarajan SK, Robles MS, Brown SA,  (2019) &quot;The forebrain synaptic transcriptome is organized by clocks but its proteome is driven by sleep.&quot; <i>Science</i> <b>366</b>(6462):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31601739 31601739]; doi: [https://dx.doi.org/10.1126/science.aav2642 10.1126/science.aav2642]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31601739 96].
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#Racle J, Michaux J, Rockinger GA, Arnaud M, Bobisse S, Chong C, Guillaume P, Coukos G, Harari A, Jandus C, Bassani-Sternberg M, Gfeller D,  (2019) &quot;Robust prediction of HLA class II epitopes by deep motif deconvolution of immunopeptidomes.&quot; <i>Nat Biotechnol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31611696 31611696]; doi: [https://dx.doi.org/10.1038/s41587-019-0289-6 10.1038/s41587-019-0289-6]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31611696 131].
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#Stadlmann J, Hudecz O, Kr&scaron;&scaron;&aacute;kov&aacute; G, Ctortecka C, Van Raemdonck G, Op De Beeck J, Desmet G, Penninger JM, Jacobs P, Mechtler K,  (2019) &quot;Improved Sensitivity in Low-Input Proteomics using Micro-Pillar Array-based Chromatography.&quot; <i>Anal Chem</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31612716 31612716]; doi: [https://dx.doi.org/10.1021/acs.analchem.9b02899 10.1021/acs.analchem.9b02899]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31612716 68].

Revision as of 20:24, 3 November 2019

GPMDB was originally constructed to serve as a reference work for all publicly available proteomics generated using tandem mass spectrometry. Public data is downloaded and reanalyzed using the current version of X! Tandem. The result files generated by the reanalysis and the relevant metadata are imported into the database and made available through the associated web site, ftp site and REST interfaces.

Contents

Current Public Data Sources

The following public data repositories are checked daily for new suitable raw data for reanalysis:

  1. ProteomeXchange/PRIDE;
  2. JPOST;
  3. MASSIVE;
  4. PeptideAtlas/PASSEL;
  5. ProteomicsDB;
  6. The Chorus Project; and
  7. iProX.

Data made available from specific large projects, such as CPTAC or the Human Proteome Atlas, are also included when they are made available. Every effort is made so that reanalyzed results from all data sources are made available within 48 hours of their being released. In addition, data from lab web sites, ftp sites and direct contributions through the GPM sites made available to researchers are imported into GPMDB as part of a daily incremental update process.

Previous Data Sources

GPMDB has been in operation since Jan. 1, 2004. Several large data source repositories have come into existence and ceased activity in the period since that time. All of the data from those repositories (e.g., TRANCHE, Peptidome) were reanalyzed and stored in GPMDB and they are still available even though the source repository sites are no longer active.

Review process

Simply because data is made available does not mean that it will be included in GPMDB. The data must be approved our quality control AI for its initial acceptance and it may be rejected subsequently because of either quality or originality concerns.

CAUTION: Many papers contain serious errors in their Methods sections. When using data from the literature, it is important to be skeptical of any experimental parameter (cell line, tissue type, modification reagents, quantitation methoods, etc.) that may impact on your use of the data. We have tried to correct any obvious errors, but there is no way to guarantee that we found them all. When attempting to analyze or reproduce results, keep in mind the likelyhood that even key parts of the experiment methods may have been recorded incorrectly in the associated manuscript, as methods are rarely reviewed properly in the current journal publication process.

Data from publications

The following is a list of data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list was current, as of November 3, 2019.

  1. Lipton MS, Pasa-Tolic' L, Anderson GA, Anderson DJ, Auberry DL, Battista JR, Daly MJ, Fredrickson J, Hixson KK, Kostandarithes H, Masselon C, Markillie LM, Moore RJ, Romine MF, Shen Y, Stritmatter E, Tolic' N, Udseth HR, Venkateswaran A, Wong KK, Zhao R, Smith RD, (2002) "Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags." Proc Natl Acad Sci U S A 99(17):11049–54; PMID: 12177431; doi: 10.1073/pnas.172170199; GPMDB: 498.
  2. Liu T, Qian WJ, Strittmatter EF, Camp DG 2nd, Anderson GA, Thrall BD, Smith RD, (2004) "High-throughput comparative proteome analysis using a quantitative cysteinyl-peptide enrichment technology." Anal Chem 76(18):5345–53; PMID: 15362891; doi: 10.1021/ac049485q; GPMDB: 6.
  3. Sauer G, Körner R, Hanisch A, Ries A, Nigg EA, Silljé HH, (2005) "Proteome analysis of the human mitotic spindle." Mol Cell Proteomics 4(1):35–43; PMID: 15561729; doi: 10.1074/mcp.M400158-MCP200; GPMDB: 1.
  4. Klein C, Garcia-Rizo C, Bisle B, Scheffer B, Zischka H, Pfeiffer F, Siedler F, Oesterhelt D, (2005) "The membrane proteome of Halobacterium salinarum." Proteomics 5(1):180–97; PMID: 15619294; doi: 10.1002/pmic.200400943; GPMDB: 37.
  5. Searle BC, Dasari S, Wilmarth PA, Turner M, Reddy AP, David LL, Nagalla SR, (2005) "Identification of protein modifications using MS/MS de novo sequencing and the OpenSea alignment algorithm." J Proteome Res 4(2):546–54; PMID: 15822933; doi: 10.1021/pr049781j; GPMDB: 4.
  6. Elias JE, Haas W, Faherty BK, Gygi SP, (2005) "Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations." Nat Methods 2(9):667–75; PMID: 16118637; doi: 10.1038/nmeth785; GPMDB: 30.
  7. Lee YJ, Rice RH, Lee YM, (2006) "Proteome analysis of human hair shaft: from protein identification to posttranslational modification." Mol Cell Proteomics 5(5):789–800; PMID: 16446289; doi: 10.1074/mcp.M500278-MCP200; GPMDB: 75.
  8. Gatlin CL, Pieper R, Huang ST, Mongodin E, Gebregeorgis E, Parmar PP, Clark DJ, Alami H, Papazisi L, Fleischmann RD, Gill SR, Peterson SN, (2006) "Proteomic profiling of cell envelope-associated proteins from Staphylococcus aureus." Proteomics 6(5):1530–49; PMID: 16470658; doi: 10.1002/pmic.200500253; GPMDB: 1603.
  9. Keshamouni VG, Michailidis G, Grasso CS, Anthwal S, Strahler JR, Walker A, Arenberg DA, Reddy RC, Akulapalli S, Thannickal VJ, Standiford TJ, Andrews PC, Omenn GS, (2006) "Differential protein expression profiling by iTRAQ-2DLC-MS/MS of lung cancer cells undergoing epithelial-mesenchymal transition reveals a migratory/invasive phenotype." J Proteome Res 5(5):1143–54; PMID: 16674103; doi: 10.1021/pr050455t; GPMDB: 3.
  10. Bisle B, Schmidt A, Scheibe B, Klein C, Tebbe A, Kellermann J, Siedler F, Pfeiffer F, Lottspeich F, Oesterhelt D, (2006) "Quantitative profiling of the membrane proteome in a halophilic archaeon." Mol Cell Proteomics 5(9):1543–58; PMID: 16804162; doi: 10.1074/mcp.M600106-MCP200; GPMDB: 32.
  11. Hamacher M, Apweiler R, Arnold G, Becker A, Blüggel M, Carrette O, Colvis C, Dunn MJ, Fröhlich T, Fountoulakis M, van Hall A, Herberg F, Ji J, Kretzschmar H, Lewczuk P, Lubec G, Marcus K, Martens L, Palacios Bustamante N, Park YM, Pennington SR, Robben J, Stühler K, Reidegeld KA, Riederer P, Rossier J, Sanchez JC, Schrader M, Stephan C, Tagle D, Thiele H, Wang J, Wiltfang J, Yoo JS, Zhang C, Klose J, Meyer HE, (2006) "HUPO Brain Proteome Project: summary of the pilot phase and introduction of a comprehensive data reprocessing strategy." Proteomics 6(18):4890–8; PMID: 16927433; doi: 10.1002/pmic.200600295; GPMDB: 296.
  12. Beausoleil SA, Villén J, Gerber SA, Rush J, Gygi SP, (2006) "A probability-based approach for high-throughput protein phosphorylation analysis and site localization." Nat Biotechnol 24(10):1285–92; PMID: 16964243; doi: 10.1038/nbt1240; GPMDB: 31.
  13. Whitehead K, Kish A, Pan M, Kaur A, Reiss DJ, King N, Hohmann L, DiRuggiero J, Baliga NS, (2006) "An integrated systems approach for understanding cellular responses to gamma radiation." Mol Syst Biol 2:47; PMID: 16969339; doi: 10.1038/msb4100091; GPMDB: 27.
  14. Price TS, Lucitt MB, Wu W, Austin DJ, Pizarro A, Yocum AK, Blair IA, FitzGerald GA, Grosser T, (2007) "EBP, a program for protein identification using multiple tandem mass spectrometry datasets." Mol Cell Proteomics 6(3):527–36; PMID: 17164401; doi: 10.1074/mcp.T600049-MCP200; GPMDB: 314.
  15. Tanner S, Shen Z, Ng J, Florea L, Guigó R, Briggs SP, Bafna V, (2007) "Improving gene annotation using peptide mass spectrometry." Genome Res 17(2):231–9; PMID: 17189379; doi: 10.1101/gr.5646507; GPMDB: 1.
  16. Konstantinidis K, Tebbe A, Klein C, Scheffer B, Aivaliotis M, Bisle B, Falb M, Pfeiffer F, Siedler F, Oesterhelt D, (2007) "Genome-wide proteomics of Natronomonas pharaonis." J Proteome Res 6(1):185–93; PMID: 17203963; doi: 10.1021/pr060352q; GPMDB: 176.
  17. Villén J, Beausoleil SA, Gerber SA, Gygi SP, (2007) "Large-scale phosphorylation analysis of mouse liver." Proc Natl Acad Sci U S A 104(5):1488–93; PMID: 17242355; doi: 10.1073/pnas.0609836104; GPMDB: 1.
  18. Klein C, Aivaliotis M, Olsen JV, Falb M, Besir H, Scheffer B, Bisle B, Tebbe A, Konstantinidis K, Siedler F, Pfeiffer F, Mann M, Oesterhelt D, (2007) "The low molecular weight proteome of Halobacterium salinarum." J Proteome Res 6(4):1510–8; PMID: 17326674; doi: 10.1021/pr060634q; GPMDB: 10.
  19. Asara JM, Schweitzer MH, Freimark LM, Phillips M, Cantley LC, (2007) "Protein sequences from mastodon and Tyrannosaurus rex revealed by mass spectrometry." Science 316(5822):280–5; PMID: 17431180; doi: 10.1126/science.1137614; GPMDB: 2.
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