GPMDB Data Sources

From TheGPMWiki
(Difference between revisions)
Jump to: navigation, search
(171 intermediate revisions not shown)
Line 6: Line 6:
#ProteomeXchange/PRIDE;
#ProteomeXchange/PRIDE;
 +
#JPOST;
#MASSIVE;
#MASSIVE;
#PeptideAtlas/PASSEL;
#PeptideAtlas/PASSEL;
Line 17: Line 18:
GPMDB has been in operation since Jan. 1, 2004. Several large data source repositories have come into existence and ceased activity in the period since that time. All of the data from those repositories (e.g., TRANCHE, Peptidome) were reanalyzed and stored in GPMDB and they are still available even though the source repository sites are no longer active.
GPMDB has been in operation since Jan. 1, 2004. Several large data source repositories have come into existence and ceased activity in the period since that time. All of the data from those repositories (e.g., TRANCHE, Peptidome) were reanalyzed and stored in GPMDB and they are still available even though the source repository sites are no longer active.
 +
 +
==Review process==
 +
 +
Simply because data is made available does not mean that it will be included in GPMDB. The data must be approved our quality control AI for its initial acceptance and it may be rejected subsequently because of either quality or originality concerns.
 +
 +
<b>CAUTION</b>: Many papers contain serious errors in their Methods sections. When using data from the literature, it is important to be skeptical of any experimental parameter (cell line, tissue type, modification reagents, quantitation methoods, etc.) that may impact on your use of the data. We have tried to correct any obvious errors, but there is no way to guarantee that we found them all. When attempting to analyze or reproduce results, keep in mind the likelyhood that even key parts of the experiment methods may have been recorded incorrectly in the associated manuscript, as methods are rarely reviewed properly in the current journal publication process.
 +
 +
==Data from publications==
 +
 +
The following is a list of data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list was current, as of January 1, 2020.
 +
 +
#Lipton MS, Pasa-Tolic&#39; L, Anderson GA, Anderson DJ, Auberry DL, Battista JR, Daly MJ, Fredrickson J, Hixson KK, Kostandarithes H, Masselon C, Markillie LM, Moore RJ, Romine MF, Shen Y, Stritmatter E, Tolic&#39; N, Udseth HR, Venkateswaran A, Wong KK, Zhao R, Smith RD,  (2002) &quot;Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags.&quot; <i>Proc Natl Acad Sci U S A</i> <b>99</b>(17):11049&ndash;54; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/12177431 12177431]; doi: [https://dx.doi.org/10.1073/pnas.172170199 10.1073/pnas.172170199]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/12177431 498].
 +
#Liu T, Qian WJ, Strittmatter EF, Camp DG 2nd, Anderson GA, Thrall BD, Smith RD,  (2004) &quot;High-throughput comparative proteome analysis using a quantitative cysteinyl-peptide enrichment technology.&quot; <i>Anal Chem</i> <b>76</b>(18):5345&ndash;53; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/15362891 15362891]; doi: [https://dx.doi.org/10.1021/ac049485q 10.1021/ac049485q]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/15362891 6].
 +
#Sauer G, K&ouml;rner R, Hanisch A, Ries A, Nigg EA, Sillj&eacute; HH,  (2005) &quot;Proteome analysis of the human mitotic spindle.&quot; <i>Mol Cell Proteomics</i> <b>4</b>(1):35&ndash;43; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/15561729 15561729]; doi: [https://dx.doi.org/10.1074/mcp.M400158-MCP200 10.1074/mcp.M400158-MCP200]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/15561729 1].
 +
#Klein C, Garcia-Rizo C, Bisle B, Scheffer B, Zischka H, Pfeiffer F, Siedler F, Oesterhelt D,  (2005) &quot;The membrane proteome of Halobacterium salinarum.&quot; <i>Proteomics</i> <b>5</b>(1):180&ndash;97; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/15619294 15619294]; doi: [https://dx.doi.org/10.1002/pmic.200400943 10.1002/pmic.200400943]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/15619294 37].
 +
#Searle BC, Dasari S, Wilmarth PA, Turner M, Reddy AP, David LL, Nagalla SR,  (2005) &quot;Identification of protein modifications using MS/MS de novo sequencing and the OpenSea alignment algorithm.&quot; <i>J Proteome Res</i> <b>4</b>(2):546&ndash;54; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/15822933 15822933]; doi: [https://dx.doi.org/10.1021/pr049781j 10.1021/pr049781j]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/15822933 4].
 +
#Elias JE, Haas W, Faherty BK, Gygi SP,  (2005) &quot;Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations.&quot; <i>Nat Methods</i> <b>2</b>(9):667&ndash;75; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/16118637 16118637]; doi: [https://dx.doi.org/10.1038/nmeth785 10.1038/nmeth785]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/16118637 30].
 +
#Lee YJ, Rice RH, Lee YM,  (2006) &quot;Proteome analysis of human hair shaft: from protein identification to posttranslational modification.&quot; <i>Mol Cell Proteomics</i> <b>5</b>(5):789&ndash;800; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/16446289 16446289]; doi: [https://dx.doi.org/10.1074/mcp.M500278-MCP200 10.1074/mcp.M500278-MCP200]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/16446289 75].
 +
#Gatlin CL, Pieper R, Huang ST, Mongodin E, Gebregeorgis E, Parmar PP, Clark DJ, Alami H, Papazisi L, Fleischmann RD, Gill SR, Peterson SN,  (2006) &quot;Proteomic profiling of cell envelope-associated proteins from Staphylococcus aureus.&quot; <i>Proteomics</i> <b>6</b>(5):1530&ndash;49; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/16470658 16470658]; doi: [https://dx.doi.org/10.1002/pmic.200500253 10.1002/pmic.200500253]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/16470658 1603].
 +
#Keshamouni VG, Michailidis G, Grasso CS, Anthwal S, Strahler JR, Walker A, Arenberg DA, Reddy RC, Akulapalli S, Thannickal VJ, Standiford TJ, Andrews PC, Omenn GS,  (2006) &quot;Differential protein expression profiling by iTRAQ-2DLC-MS/MS of lung cancer cells undergoing epithelial-mesenchymal transition reveals a migratory/invasive phenotype.&quot; <i>J Proteome Res</i> <b>5</b>(5):1143&ndash;54; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/16674103 16674103]; doi: [https://dx.doi.org/10.1021/pr050455t 10.1021/pr050455t]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/16674103 3].
 +
#Bisle B, Schmidt A, Scheibe B, Klein C, Tebbe A, Kellermann J, Siedler F, Pfeiffer F, Lottspeich F, Oesterhelt D,  (2006) &quot;Quantitative profiling of the membrane proteome in a halophilic archaeon.&quot; <i>Mol Cell Proteomics</i> <b>5</b>(9):1543&ndash;58; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/16804162 16804162]; doi: [https://dx.doi.org/10.1074/mcp.M600106-MCP200 10.1074/mcp.M600106-MCP200]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/16804162 32].
 +
#Hamacher M, Apweiler R, Arnold G, Becker A, Bl&uuml;ggel M, Carrette O, Colvis C, Dunn MJ, Fr&ouml;hlich T, Fountoulakis M, van Hall A, Herberg F, Ji J, Kretzschmar H, Lewczuk P, Lubec G, Marcus K, Martens L, Palacios Bustamante N, Park YM, Pennington SR, Robben J, St&uuml;hler K, Reidegeld KA, Riederer P, Rossier J, Sanchez JC, Schrader M, Stephan C, Tagle D, Thiele H, Wang J, Wiltfang J, Yoo JS, Zhang C, Klose J, Meyer HE,  (2006) &quot;HUPO Brain Proteome Project: summary of the pilot phase and introduction of a comprehensive data reprocessing strategy.&quot; <i>Proteomics</i> <b>6</b>(18):4890&ndash;8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/16927433 16927433]; doi: [https://dx.doi.org/10.1002/pmic.200600295 10.1002/pmic.200600295]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/16927433 296].
 +
#Beausoleil SA, Vill&eacute;n J, Gerber SA, Rush J, Gygi SP,  (2006) &quot;A probability-based approach for high-throughput protein phosphorylation analysis and site localization.&quot; <i>Nat Biotechnol</i> <b>24</b>(10):1285&ndash;92; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/16964243 16964243]; doi: [https://dx.doi.org/10.1038/nbt1240 10.1038/nbt1240]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/16964243 31].
 +
#Whitehead K, Kish A, Pan M, Kaur A, Reiss DJ, King N, Hohmann L, DiRuggiero J, Baliga NS,  (2006) &quot;An integrated systems approach for understanding cellular responses to gamma radiation.&quot; <i>Mol Syst Biol</i> <b>2</b>:47; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/16969339 16969339]; doi: [https://dx.doi.org/10.1038/msb4100091 10.1038/msb4100091]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/16969339 27].
 +
#Price TS, Lucitt MB, Wu W, Austin DJ, Pizarro A, Yocum AK, Blair IA, FitzGerald GA, Grosser T,  (2007) &quot;EBP, a program for protein identification using multiple tandem mass spectrometry datasets.&quot; <i>Mol Cell Proteomics</i> <b>6</b>(3):527&ndash;36; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/17164401 17164401]; doi: [https://dx.doi.org/10.1074/mcp.T600049-MCP200 10.1074/mcp.T600049-MCP200]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/17164401 314].
 +
#Tanner S, Shen Z, Ng J, Florea L, Guig&oacute; R, Briggs SP, Bafna V,  (2007) &quot;Improving gene annotation using peptide mass spectrometry.&quot; <i>Genome Res</i> <b>17</b>(2):231&ndash;9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/17189379 17189379]; doi: [https://dx.doi.org/10.1101/gr.5646507 10.1101/gr.5646507]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/17189379 1].
 +
#Konstantinidis K, Tebbe A, Klein C, Scheffer B, Aivaliotis M, Bisle B, Falb M, Pfeiffer F, Siedler F, Oesterhelt D,  (2007) &quot;Genome-wide proteomics of Natronomonas pharaonis.&quot; <i>J Proteome Res</i> <b>6</b>(1):185&ndash;93; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/17203963 17203963]; doi: [https://dx.doi.org/10.1021/pr060352q 10.1021/pr060352q]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/17203963 176].
 +
#Vill&eacute;n J, Beausoleil SA, Gerber SA, Gygi SP,  (2007) &quot;Large-scale phosphorylation analysis of mouse liver.&quot; <i>Proc Natl Acad Sci U S A</i> <b>104</b>(5):1488&ndash;93; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/17242355 17242355]; doi: [https://dx.doi.org/10.1073/pnas.0609836104 10.1073/pnas.0609836104]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/17242355 1].
 +
#Klein C, Aivaliotis M, Olsen JV, Falb M, Besir H, Scheffer B, Bisle B, Tebbe A, Konstantinidis K, Siedler F, Pfeiffer F, Mann M, Oesterhelt D,  (2007) &quot;The low molecular weight proteome of Halobacterium salinarum.&quot; <i>J Proteome Res</i> <b>6</b>(4):1510&ndash;8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/17326674 17326674]; doi: [https://dx.doi.org/10.1021/pr060634q 10.1021/pr060634q]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/17326674 10].
 +
#Asara JM, Schweitzer MH, Freimark LM, Phillips M, Cantley LC,  (2007) &quot;Protein sequences from mastodon and Tyrannosaurus rex revealed by mass spectrometry.&quot; <i>Science</i> <b>316</b>(5822):280&ndash;5; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/17431180 17431180]; doi: [https://dx.doi.org/10.1126/science.1137614 10.1126/science.1137614]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/17431180 2].
 +
#Lowery DM, Clauser KR, Hjerrild M, Lim D, Alexander J, Kishi K, Ong SE, Gammeltoft S, Carr SA, Yaffe MB,  (2007) &quot;Proteomic screen defines the Polo-box domain interactome and identifies Rock2 as a Plk1 substrate.&quot; <i>EMBO J</i> <b>26</b>(9):2262&ndash;73; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/17446864 17446864]; doi: [https://dx.doi.org/10.1038/sj.emboj.7601683 10.1038/sj.emboj.7601683]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/17446864 24].
 +
#Brunner E, Ahrens CH, Mohanty S, Baetschmann H, Loevenich S, Potthast F, Deutsch EW, Panse C, de Lichtenberg U, Rinner O, Lee H, Pedrioli PG, Malmstrom J, Koehler K, Schrimpf S, Krijgsveld J, Kregenow F, Heck AJ, Hafen E, Schlapbach R, Aebersold R,  (2007) &quot;A high-quality catalog of the Drosophila melanogaster proteome.&quot; <i>Nat Biotechnol</i> <b>25</b>(5):576&ndash;83; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/17450130 17450130]; doi: [https://dx.doi.org/10.1038/nbt1300 10.1038/nbt1300]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/17450130 1907].
 +
#Wu L, Hwang SI, Rezaul K, Lu LJ, Mayya V, Gerstein M, Eng JK, Lundgren DH, Han DK,  (2007) &quot;Global survey of human T leukemic cells by integrating proteomics and transcriptomics profiling.&quot; <i>Mol Cell Proteomics</i> <b>6</b>(8):1343&ndash;53; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/17519225 17519225]; doi: [https://dx.doi.org/10.1074/mcp.M700017-MCP200 10.1074/mcp.M700017-MCP200]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/17519225 2299].
 +
#Au CE, Bell AW, Gilchrist A, Hiding J, Nilsson T, Bergeron JJ,  (2007) &quot;Organellar proteomics to create the cell map.&quot; <i>Curr Opin Cell Biol</i> <b>19</b>(4):376&ndash;85; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/17689063 17689063]; doi: [https://dx.doi.org/10.1016/j.ceb.2007.05.004 10.1016/j.ceb.2007.05.004]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/17689063 4090].
 +
#Whiteaker JR, Zhang H, Zhao L, Wang P, Kelly-Spratt KS, Ivey RG, Piening BD, Feng LC, Kasarda E, Gurley KE, Eng JK, Chodosh LA, Kemp CJ, McIntosh MW, Paulovich AG,  (2007) &quot;Integrated pipeline for mass spectrometry-based discovery and confirmation of biomarkers demonstrated in a mouse model of breast cancer.&quot; <i>J Proteome Res</i> <b>6</b>(10):3962&ndash;75; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/17711321 17711321]; doi: [https://dx.doi.org/10.1021/pr070202v 10.1021/pr070202v]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/17711321 84].
 +
#Bantscheff M, Eberhard D, Abraham Y, Bastuck S, Boesche M, Hobson S, Mathieson T, Perrin J, Raida M, Rau C, Reader V, Sweetman G, Bauer A, Bouwmeester T, Hopf C, Kruse U, Neubauer G, Ramsden N, Rick J, Kuster B, Drewes G,  (2007) &quot;Quantitative chemical proteomics reveals mechanisms of action of clinical ABL kinase inhibitors.&quot; <i>Nat Biotechnol</i> <b>25</b>(9):1035&ndash;44; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/17721511 17721511]; doi: [https://dx.doi.org/10.1038/nbt1328 10.1038/nbt1328]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/17721511 729].
 +
#Padliya ND, Garrett WM, Campbell KB, Tabb DL, Cooper B,  (2007) &quot;Tandem mass spectrometry for the detection of plant pathogenic fungi and the effects of database composition on protein inferences.&quot; <i>Proteomics</i> <b>7</b>(21):3932&ndash;42; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/17922518 17922518]; doi: [https://dx.doi.org/10.1002/pmic.200700419 10.1002/pmic.200700419]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/17922518 1].
 +
#Rikova K, Guo A, Zeng Q, Possemato A, Yu J, Haack H, Nardone J, Lee K, Reeves C, Li Y, Hu Y, Tan Z, Stokes M, Sullivan L, Mitchell J, Wetzel R, Macneill J, Ren JM, Yuan J, Bakalarski CE, Villen J, Kornhauser JM, Smith B, Li D, Zhou X, Gygi SP, Gu TL, Polakiewicz RD, Rush J, Comb MJ,  (2007) &quot;Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer.&quot; <i>Cell</i> <b>131</b>(6):1190&ndash;203; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/18083107 18083107]; doi: [https://dx.doi.org/10.1016/j.cell.2007.11.025 10.1016/j.cell.2007.11.025]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/18083107 104].
 +
#Ansong C, Yoon H, Norbeck AD, Gustin JK, McDermott JE, Mottaz HM, Rue J, Adkins JN, Heffron F, Smith RD,  (2008) &quot;Proteomics analysis of the causative agent of typhoid fever.&quot; <i>J Proteome Res</i> <b>7</b>(2):546&ndash;57; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/18166006 18166006]; doi: [https://dx.doi.org/10.1021/pr070434u 10.1021/pr070434u]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/18166006 313].
 +
#Finney GL, Blackler AR, Hoopmann MR, Canterbury JD, Wu CC, MacCoss MJ,  (2008) &quot;Label-free comparative analysis of proteomics mixtures using chromatographic alignment of high-resolution muLC-MS data.&quot; <i>Anal Chem</i> <b>80</b>(4):961&ndash;71; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/18189369 18189369]; doi: [https://dx.doi.org/10.1021/ac701649e 10.1021/ac701649e]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/18189369 12].
 +
#Stevens SM Jr, Duncan RS, Koulen P, Prokai L,  (2008) &quot;Proteomic analysis of mouse brain microsomes: identification and bioinformatic characterization of endoplasmic reticulum proteins in the mammalian central nervous system.&quot; <i>J Proteome Res</i> <b>7</b>(3):1046&ndash;54; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/18271522 18271522]; doi: [https://dx.doi.org/10.1021/pr7006279 10.1021/pr7006279]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/18271522 4].
 +
#Yocum AK, Gratsch TE, Leff N, Strahler JR, Hunter CL, Walker AK, Michailidis G, Omenn GS, O&#39;Shea KS, Andrews PC,  (2008) &quot;Coupled global and targeted proteomics of human embryonic stem cells during induced differentiation.&quot; <i>Mol Cell Proteomics</i> <b>7</b>(4):750&ndash;67; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/18304949 18304949]; doi: [https://dx.doi.org/10.1074/mcp.M700399-MCP200 10.1074/mcp.M700399-MCP200]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/18304949 18].
 +
#Lemeer S, Pinkse MW, Mohammed S, van Breukelen B, den Hertog J, Slijper M, Heck AJ,  (2008) &quot;Online automated in vivo zebrafish phosphoproteomics: from large-scale analysis down to a single embryo.&quot; <i>J Proteome Res</i> <b>7</b>(4):1555&ndash;64; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/18307296 18307296]; doi: [https://dx.doi.org/10.1021/pr700667w 10.1021/pr700667w]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/18307296 148].
 +
#Zhai B, Vill&eacute;n J, Beausoleil SA, Mintseris J, Gygi SP,  (2008) &quot;Phosphoproteome analysis of Drosophila melanogaster embryos.&quot; <i>J Proteome Res</i> <b>7</b>(4):1675&ndash;82; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/18327897 18327897]; doi: [https://dx.doi.org/10.1021/pr700696a 10.1021/pr700696a]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/18327897 24].
 +
#Denny P, Hagen FK, Hardt M, Liao L, Yan W, Arellanno M, Bassilian S, Bedi GS, Boontheung P, Cociorva D, Delahunty CM, Denny T, Dunsmore J, Faull KF, Gilligan J, Gonzalez-Begne M, Halgand F, Hall SC, Han X, Henson B, Hewel J, Hu S, Jeffrey S, Jiang J, Loo JA, Ogorzalek Loo RR, Malamud D, Melvin JE, Miroshnychenko O, Navazesh M, Niles R, Park SK, Prakobphol A, Ramachandran P, Richert M, Robinson S, Sondej M, Souda P, Sullivan MA, Takashima J, Than S, Wang J, Whitelegge JP, Witkowska HE, Wolinsky L, Xie Y, Xu T, Yu W, Ytterberg J, Wong DT, Yates JR 3rd, Fisher SJ,  (2008) &quot;The proteomes of human parotid and submandibular/sublingual gland salivas collected as the ductal secretions.&quot; <i>J Proteome Res</i> <b>7</b>(5):1994&ndash;2006; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/18361515 18361515]; doi: [https://dx.doi.org/10.1021/pr700764j 10.1021/pr700764j]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/18361515 102].
 +
#Sim&oacute; C, Bachi A, Cattaneo A, Guerrier L, Fortis F, Boschetti E, Podtelejnikov A, Righetti PG,  (2008) &quot;Performance of combinatorial peptide libraries in capturing the low-abundance proteome of red blood cells. 1. Behavior of mono- to hexapeptides.&quot; <i>Anal Chem</i> <b>80</b>(10):3547&ndash;56; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/18399644 18399644]; doi: [https://dx.doi.org/10.1021/ac702635v 10.1021/ac702635v]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/18399644 19].
 +
#Bachi A, Sim&oacute; C, Restuccia U, Guerrier L, Fortis F, Boschetti E, Masseroli M, Righetti PG,  (2008) &quot;Performance of combinatorial peptide libraries in capturing the low-abundance proteome of red blood cells. 2. Behavior of resins containing individual amino acids.&quot; <i>Anal Chem</i> <b>80</b>(10):3557&ndash;65; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/18410134 18410134]; doi: [https://dx.doi.org/10.1021/ac8001353 10.1021/ac8001353]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/18410134 2].
 +
#Baerenfaller K, Grossmann J, Grobei MA, Hull R, Hirsch-Hoffmann M, Yalovsky S, Zimmermann P, Grossniklaus U, Gruissem W, Baginsky S,  (2008) &quot;Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics.&quot; <i>Science</i> <b>320</b>(5878):938&ndash;41; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/18436743 18436743]; doi: [https://dx.doi.org/10.1126/science.1157956 10.1126/science.1157956]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/18436743 28].
 +
#Ji H, Erfani N, Tauro BJ, Kapp EA, Zhu HJ, Moritz RL, Lim JW, Simpson RJ,  (2008) &quot;Difference gel electrophoresis analysis of Ras-transformed fibroblast cell-derived exosomes.&quot; <i>Electrophoresis</i> <b>29</b>(12):2660&ndash;71; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/18494037 18494037]; doi: [https://dx.doi.org/10.1002/elps.200800015 10.1002/elps.200800015]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/18494037 26].
 +
#Cao Z, Li C, Higginbotham JN, Franklin JL, Tabb DL, Graves-Deal R, Hill S, Cheek K, Jerome WG, Lapierre LA, Goldenring JR, Ham AJ, Coffey RJ,  (2008) &quot;Use of fluorescence-activated vesicle sorting for isolation of Naked2-associated, basolaterally targeted exocytic vesicles for proteomics analysis.&quot; <i>Mol Cell Proteomics</i> <b>7</b>(9):1651&ndash;67; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/18504258 18504258]; doi: [https://dx.doi.org/10.1074/mcp.M700155-MCP200 10.1074/mcp.M700155-MCP200]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/18504258 6].
 +
#Lemeer S, Jopling C, Gouw J, Mohammed S, Heck AJ, Slijper M, den Hertog J,  (2008) &quot;Comparative phosphoproteomics of zebrafish Fyn/Yes morpholino knockdown embryos.&quot; <i>Mol Cell Proteomics</i> <b>7</b>(11):2176&ndash;87; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/18550893 18550893]; doi: [https://dx.doi.org/10.1074/mcp.M800081-MCP200 10.1074/mcp.M800081-MCP200]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/18550893 31].
 +
#Sodek KL, Evangelou AI, Ignatchenko A, Agochiya M, Brown TJ, Ringuette MJ, Jurisica I, Kislinger T,  (2008) &quot;Identification of pathways associated with invasive behavior by ovarian cancer cells using multidimensional protein identification technology (MudPIT).&quot; <i>Mol Biosyst</i> <b>4</b>(7):762&ndash;73; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/18563251 18563251]; doi: [https://dx.doi.org/10.1039/b717542f 10.1039/b717542f]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/18563251 252].
 +
#Schimmel J, Larsen KM, Matic I, van Hagen M, Cox J, Mann M, Andersen JS, Vertegaal AC,  (2008) &quot;The ubiquitin-proteasome system is a key component of the SUMO-2/3 cycle.&quot; <i>Mol Cell Proteomics</i> <b>7</b>(11):2107&ndash;22; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/18565875 18565875]; doi: [https://dx.doi.org/10.1074/mcp.M800025-MCP200 10.1074/mcp.M800025-MCP200]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/18565875 5].
 +
#Yu MJ, Pisitkun T, Wang G, Aranda JF, Gonzales PA, Tchapyjnikov D, Shen RF, Alonso MA, Knepper MA,  (2008) &quot;Large-scale quantitative LC-MS/MS analysis of detergent-resistant membrane proteins from rat renal collecting duct.&quot; <i>Am J Physiol Cell Physiol</i> <b>295</b>(3):C661&ndash;78; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/18596208 18596208]; doi: [https://dx.doi.org/10.1152/ajpcell.90650.2007 10.1152/ajpcell.90650.2007]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/18596208 137].
 +
#Pagliarini DJ, Calvo SE, Chang B, Sheth SA, Vafai SB, Ong SE, Walford GA, Sugiana C, Boneh A, Chen WK, Hill DE, Vidal M, Evans JG, Thorburn DR, Carr SA, Mootha VK,  (2008) &quot;A mitochondrial protein compendium elucidates complex I disease biology.&quot; <i>Cell</i> <b>134</b>(1):112&ndash;23; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/18614015 18614015]; doi: [https://dx.doi.org/10.1016/j.cell.2008.06.016 10.1016/j.cell.2008.06.016]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/18614015 274].
 +
#Merrihew GE, Davis C, Ewing B, Williams G, K&auml;ll L, Frewen BE, Noble WS, Green P, Thomas JH, MacCoss MJ,  (2008) &quot;Use of shotgun proteomics for the identification, confirmation, and correction of C. elegans gene annotations.&quot; <i>Genome Res</i> <b>18</b>(10):1660&ndash;9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/18653799 18653799]; doi: [https://dx.doi.org/10.1101/gr.077644.108 10.1101/gr.077644.108]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/18653799 369].
 +
#Dix MM, Simon GM, Cravatt BF,  (2008) &quot;Global mapping of the topography and magnitude of proteolytic events in apoptosis.&quot; <i>Cell</i> <b>134</b>(4):679&ndash;91; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/18724940 18724940]; doi: [https://dx.doi.org/10.1016/j.cell.2008.06.038 10.1016/j.cell.2008.06.038]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/18724940 178].
 +
#Kline KG, Frewen B, Bristow MR, Maccoss MJ, Wu CC,  (2008) &quot;High quality catalog of proteotypic peptides from human heart.&quot; <i>J Proteome Res</i> <b>7</b>(11):5055&ndash;61; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/18803417 18803417]; doi: [https://dx.doi.org/10.1021/pr800239e 10.1021/pr800239e]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/18803417 96].
 +
#de Godoy LM, Olsen JV, Cox J, Nielsen ML, Hubner NC, Fr&ouml;hlich F, Walther TC, Mann M,  (2008) &quot;Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast.&quot; <i>Nature</i> <b>455</b>(7217):1251&ndash;4; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/18820680 18820680]; doi: [https://dx.doi.org/10.1038/nature07341 10.1038/nature07341]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/18820680 505].
 +
#Liao L, Park SK, Xu T, Vanderklish P, Yates JR 3rd,  (2008) &quot;Quantitative proteomic analysis of primary neurons reveals diverse changes in synaptic protein content in fmr1 knockout mice.&quot; <i>Proc Natl Acad Sci U S A</i> <b>105</b>(40):15281&ndash;6; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/18829439 18829439]; doi: [https://dx.doi.org/10.1073/pnas.0804678105 10.1073/pnas.0804678105]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/18829439 15].
 +
#Lin MK, Lee YJ, Lough TJ, Phinney BS, Lucas WJ,  (2009) &quot;Analysis of the pumpkin phloem proteome provides insights into angiosperm sieve tube function.&quot; <i>Mol Cell Proteomics</i> <b>8</b>(2):343&ndash;56; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/18936055 18936055]; doi: [https://dx.doi.org/10.1074/mcp.M800420-MCP200 10.1074/mcp.M800420-MCP200]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/18936055 346].
 +
#Slebos RJ, Brock JW, Winters NF, Stuart SR, Martinez MA, Li M, Chambers MC, Zimmerman LJ, Ham AJ, Tabb DL, Liebler DC,  (2008) &quot;Evaluation of strong cation exchange versus isoelectric focusing of peptides for multidimensional liquid chromatography-tandem mass spectrometry.&quot; <i>J Proteome Res</i> <b>7</b>(12):5286&ndash;94; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/18939861 18939861]; doi: [https://dx.doi.org/10.1021/pr8004666 10.1021/pr8004666]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/18939861 346].
 +
#Mittler G, Butter F, Mann M,  (2009) &quot;A SILAC-based DNA protein interaction screen that identifies candidate binding proteins to functional DNA elements.&quot; <i>Genome Res</i> <b>19</b>(2):284&ndash;93; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19015324 19015324]; doi: [https://dx.doi.org/10.1101/gr.081711.108 10.1101/gr.081711.108]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19015324 7].
 +
#Codreanu SG, Zhang B, Sobecki SM, Billheimer DD, Liebler DC,  (2009) &quot;Global analysis of protein damage by the lipid electrophile 4-hydroxy-2-nonenal.&quot; <i>Mol Cell Proteomics</i> <b>8</b>(4):670&ndash;80; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19054759 19054759]; doi: [https://dx.doi.org/10.1074/mcp.M800070-MCP200 10.1074/mcp.M800070-MCP200]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19054759 168].
 +
#Ulintz PJ, Yocum AK, Bodenmiller B, Aebersold R, Andrews PC, Nesvizhskii AI,  (2009) &quot;Comparison of MS(2)-only, MSA, and MS(2)/MS(3) methodologies for phosphopeptide identification.&quot; <i>J Proteome Res</i> <b>8</b>(2):887&ndash;99; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19072539 19072539]; doi: [https://dx.doi.org/10.1021/pr800535h 10.1021/pr800535h]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19072539 18].
 +
#Du J, Bernasconi P, Clauser KR, Mani DR, Finn SP, Beroukhim R, Burns M, Julian B, Peng XP, Hieronymus H, Maglathlin RL, Lewis TA, Liau LM, Nghiemphu P, Mellinghoff IK, Louis DN, Loda M, Carr SA, Kung AL, Golub TR,  (2009) &quot;Bead-based profiling of tyrosine kinase phosphorylation identifies SRC as a potential target for glioblastoma therapy.&quot; <i>Nat Biotechnol</i> <b>27</b>(1):77&ndash;83; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19098899 19098899]; doi: [https://dx.doi.org/10.1038/nbt.1513 10.1038/nbt.1513]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19098899 36].
 +
#Glatter T, Wepf A, Aebersold R, Gstaiger M,  (2009) &quot;An integrated workflow for charting the human interaction proteome: insights into the PP2A system.&quot; <i>Mol Syst Biol</i> <b>5</b>:237; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19156129 19156129]; doi: [https://dx.doi.org/10.1038/msb.2008.75 10.1038/msb.2008.75]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19156129 62].
 +
#Bivi N, Bereszczak JZ, Romanello M, Zeef LA, Delneri D, Quadrifoglio F, Moro L, Brancia FL, Tell G,  (2009) &quot;Transcriptome and proteome analysis of osteocytes treated with nitrogen-containing bisphosphonates.&quot; <i>J Proteome Res</i> <b>8</b>(3):1131&ndash;42; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19226166 19226166]; doi: [https://dx.doi.org/10.1021/pr8005606 10.1021/pr8005606]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19226166 10].
 +
#Pieper R, Huang ST, Clark DJ, Robinson JM, Alami H, Parmar PP, Suh MJ, Kuntumalla S, Bunai CL, Perry RD, Fleischmann RD, Peterson SN,  (2009) &quot;Integral and peripheral association of proteins and protein complexes with Yersinia pestis inner and outer membranes.&quot; <i>Proteome Sci</i> <b>7</b>:5; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19228400 19228400]; doi: [https://dx.doi.org/10.1186/1477-5956-7-5 10.1186/1477-5956-7-5]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19228400 376].
 +
#de Sousa Abreu R, Sanchez-Diaz PC, Vogel C, Burns SC, Ko D, Burton TL, Vo DT, Chennasamudaram S, Le SY, Shapiro BA, Penalva LO,  (2009) &quot;Genomic analyses of musashi1 downstream targets show a strong association with cancer-related processes.&quot; <i>J Biol Chem</i> <b>284</b>(18):12125&ndash;35; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19258308 19258308]; doi: [https://dx.doi.org/10.1074/jbc.M809605200 10.1074/jbc.M809605200]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19258308 14].
 +
#Mathias RA, Wang B, Ji H, Kapp EA, Moritz RL, Zhu HJ, Simpson RJ,  (2009) &quot;Secretome-based proteomic profiling of Ras-transformed MDCK cells reveals extracellular modulators of epithelial-mesenchymal transition.&quot; <i>J Proteome Res</i> <b>8</b>(6):2827&ndash;37; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19296674 19296674]; doi: [https://dx.doi.org/10.1021/pr8010974 10.1021/pr8010974]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19296674 98].
 +
#Boersema PJ, Raijmakers R, Lemeer S, Mohammed S, Heck AJ,  (2009) &quot;Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics.&quot; <i>Nat Protoc</i> <b>4</b>(4):484&ndash;94; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19300442 19300442]; doi: [https://dx.doi.org/10.1038/nprot.2009.21 10.1038/nprot.2009.21]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19300442 3].
 +
#Ramakrishnan SR, Vogel C, Prince JT, Li Z, Penalva LO, Myers M, Marcotte EM, Miranker DP, Wang R,  (2009) &quot;Integrating shotgun proteomics and mRNA expression data to improve protein identification.&quot; <i>Bioinformatics</i> <b>25</b>(11):1397&ndash;403; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19318424 19318424]; doi: [https://dx.doi.org/10.1093/bioinformatics/btp168 10.1093/bioinformatics/btp168]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19318424 8].
 +
#Rudomin EL, Carr SA, Jaffe JD,  (2009) &quot;Directed sample interrogation utilizing an accurate mass exclusion-based data-dependent acquisition strategy (AMEx).&quot; <i>J Proteome Res</i> <b>8</b>(6):3154&ndash;60; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19344186 19344186]; doi: [https://dx.doi.org/10.1021/pr801017a 10.1021/pr801017a]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19344186 11].
 +
#Steiling K, Kadar AY, Bergerat A, Flanigon J, Sridhar S, Shah V, Ahmad QR, Brody JS, Lenburg ME, Steffen M, Spira A,  (2009) &quot;Comparison of proteomic and transcriptomic profiles in the bronchial airway epithelium of current and never smokers.&quot; <i>PLoS One</i> <b>4</b>(4):e5043; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19357784 19357784]; doi: [https://dx.doi.org/10.1371/journal.pone.0005043 10.1371/journal.pone.0005043]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19357784 589].
 +
#Hjelmervik TO, Jonsson R, Bolstad AI,  (2009) &quot;The minor salivary gland proteome in Sj&ouml;gren&#39;s syndrome.&quot; <i>Oral Dis</i> <b>15</b>(5):342&ndash;53; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19364392 19364392]; doi: [https://dx.doi.org/10.1111/j.1601-0825.2009.01531.x 10.1111/j.1601-0825.2009.01531.x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19364392 2].
 +
#Zanivan S, Gnad F, Wickstr&ouml;m SA, Geiger T, Macek B, Cox J, F&auml;ssler R, Mann M,  (2008) &quot;Solid tumor proteome and phosphoproteome analysis by high resolution mass spectrometry.&quot; <i>J Proteome Res</i> <b>7</b>(12):5314&ndash;26; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19367708 19367708]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19367708 20].
 +
#Reiland S, Messerli G, Baerenfaller K, Gerrits B, Endler A, Grossmann J, Gruissem W, Baginsky S,  (2009) &quot;Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.&quot; <i>Plant Physiol</i> <b>150</b>(2):889&ndash;903; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19376835 19376835]; doi: [https://dx.doi.org/10.1104/pp.109.138677 10.1104/pp.109.138677]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19376835 13].
 +
#Parker KC, Walsh RJ, Salajegheh M, Amato AA, Krastins B, Sarracino DA, Greenberg SA,  (2009) &quot;Characterization of human skeletal muscle biopsy samples using shotgun proteomics.&quot; <i>J Proteome Res</i> <b>8</b>(7):3265&ndash;77; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19382779 19382779]; doi: [https://dx.doi.org/10.1021/pr800873q 10.1021/pr800873q]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19382779 36].
 +
#Bell AW, Deutsch EW, Au CE, Kearney RE, Beavis R, Sechi S, Nilsson T, Bergeron JJ, HUPO Test Sample Working Group.,  (2009) &quot;A HUPO test sample study reveals common problems  in mass spectrometry-based proteomics.&quot; <i>Nat Methods</i> <b>6</b>(6):423&ndash;30; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19448641 19448641]; doi: [https://dx.doi.org/10.1038/nmeth.1333 10.1038/nmeth.1333]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19448641 14].
 +
#Fern&aacute;ndez E, Collins MO, Uren RT, Kopanitsa MV, Komiyama NH, Croning MD, Zografos L, Armstrong JD, Choudhary JS, Grant SG,  (2009) &quot;Targeted tandem affinity purification of PSD-95 recovers core postsynaptic complexes and schizophrenia susceptibility proteins.&quot; <i>Mol Syst Biol</i> <b>5</b>:269; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19455133 19455133]; doi: [https://dx.doi.org/10.1038/msb.2009.27 10.1038/msb.2009.27]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19455133 70].
 +
#Sprung RW Jr, Brock JW, Tanksley JP, Li M, Washington MK, Slebos RJ, Liebler DC,  (2009) &quot;Equivalence of protein inventories obtained from formalin-fixed paraffin-embedded and frozen tissue in multidimensional liquid chromatography-tandem mass spectrometry shotgun proteomic analysis.&quot; <i>Mol Cell Proteomics</i> <b>8</b>(8):1988&ndash;98; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19467989 19467989]; doi: [https://dx.doi.org/10.1074/mcp.M800518-MCP200 10.1074/mcp.M800518-MCP200]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19467989 230].
 +
#Burkard ME, Maciejowski J, Rodriguez-Bravo V, Repka M, Lowery DM, Clauser KR, Zhang C, Shokat KM, Carr SA, Yaffe MB, Jallepalli PV,  (2009) &quot;Plk1 self-organization and priming phosphorylation of HsCYK-4 at the spindle midzone regulate the onset of division in human cells.&quot; <i>PLoS Biol</i> <b>7</b>(5):e1000111; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19468302 19468302]; doi: [https://dx.doi.org/10.1371/journal.pbio.1000111 10.1371/journal.pbio.1000111]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19468302 1].
 +
#Samaee SM, Lahnsteiner F, Gim&eacute;nez G, Est&eacute;vez A, Sarg B, Lindner H,  (2009) &quot;Quantitative composition of vitellogenin-derived yolk proteins and their effects on viability of embryos and larvae of common dentex (Dentex dentex), a marine pelagophil teleost.&quot; <i>J Exp Zool A Ecol Genet Physiol</i> <b>311</b>(7):504&ndash;20; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19492308 19492308]; doi: [https://dx.doi.org/10.1002/jez.548 10.1002/jez.548]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19492308 4].
 +
#Ma ZQ, Dasari S, Chambers MC, Litton MD, Sobecki SM, Zimmerman LJ, Halvey PJ, Schilling B, Drake PM, Gibson BW, Tabb DL,  (2009) &quot;IDPicker 2.0: Improved protein assembly with high discrimination peptide identification filtering.&quot; <i>J Proteome Res</i> <b>8</b>(8):3872&ndash;81; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19522537 19522537]; doi: [https://dx.doi.org/10.1021/pr900360j 10.1021/pr900360j]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19522537 18].
 +
#Shi L, Chowdhury SM, Smallwood HS, Yoon H, Mottaz-Brewer HM, Norbeck AD, McDermott JE, Clauss TR, Heffron F, Smith RD, Adkins JN,  (2009) &quot;Proteomic investigation of the time course responses of RAW 264.7 macrophages to infection with Salmonella enterica.&quot; <i>Infect Immun</i> <b>77</b>(8):3227&ndash;33; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19528222 19528222]; doi: [https://dx.doi.org/10.1128/IAI.00063-09 10.1128/IAI.00063-09]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19528222 29].
 +
#Cox B, Kotlyar M, Evangelou AI, Ignatchenko V, Ignatchenko A, Whiteley K, Jurisica I, Adamson SL, Rossant J, Kislinger T,  (2009) &quot;Comparative systems biology of human and mouse as a tool to guide the modeling of human placental pathology.&quot; <i>Mol Syst Biol</i> <b>5</b>:279; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19536202 19536202]; doi: [https://dx.doi.org/10.1038/msb.2009.37 10.1038/msb.2009.37]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19536202 166].
 +
#Kentsis A, Lin YY, Kurek K, Calicchio M, Wang YY, Monigatti F, Campagne F, Lee R, Horwitz B, Steen H, Bachur R,  (2010) &quot;Discovery and validation of urine markers of acute pediatric appendicitis using high-accuracy mass spectrometry.&quot; <i>Ann Emerg Med</i> <b>55</b>(1):62&ndash;70.e4; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19556024 19556024]; doi: [https://dx.doi.org/10.1016/j.annemergmed.2009.04.020 10.1016/j.annemergmed.2009.04.020]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19556024 311].
 +
#Lau NC, Kolkman A, van Schaik FM, Mulder KW, Pijnappel WW, Heck AJ, Timmers HT,  (2009) &quot;Human Ccr4-Not complexes contain variable deadenylase subunits.&quot; <i>Biochem J</i> <b>422</b>(3):443&ndash;53; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19558367 19558367]; doi: [https://dx.doi.org/10.1042/BJ20090500 10.1042/BJ20090500]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19558367 10].
 +
#Zivanovic Y, Armengaud J, Lagorce A, Leplat C, Gu&eacute;rin P, Dutertre M, Anthouard V, Forterre P, Wincker P, Confalonieri F,  (2009) &quot;Genome analysis and genome-wide proteomics of Thermococcus gammatolerans, the most radioresistant organism known amongst the Archaea.&quot; <i>Genome Biol</i> <b>10</b>(6):R70; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19558674 19558674]; doi: [https://dx.doi.org/10.1186/gb-2009-10-6-r70 10.1186/gb-2009-10-6-r70]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19558674 7].
 +
#Alev C, Shinmyozu K, McIntyre BA, Sheng G,  (2009) &quot;Genomic organization of zebra finch alpha and beta globin genes and their expression in primitive and definitive blood in comparison with globins in chicken.&quot; <i>Dev Genes Evol</i> <b>219</b>(7):353&ndash;60; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19609557 19609557]; doi: [https://dx.doi.org/10.1007/s00427-009-0294-8 10.1007/s00427-009-0294-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19609557 8].
 +
#Izquierdo L, Schulz BL, Rodrigues JA, G&uuml;ther ML, Procter JB, Barton GJ, Aebi M, Ferguson MA,  (2009) &quot;Distinct donor and acceptor specificities of Trypanosoma brucei oligosaccharyltransferases.&quot; <i>EMBO J</i> <b>28</b>(17):2650&ndash;61; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19629045 19629045]; doi: [https://dx.doi.org/10.1038/emboj.2009.203 10.1038/emboj.2009.203]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19629045 1].
 +
#Van Hoof D, Mu&ntilde;oz J, Braam SR, Pinkse MW, Linding R, Heck AJ, Mummery CL, Krijgsveld J,  (2009) &quot;Phosphorylation dynamics during early differentiation of human embryonic stem cells.&quot; <i>Cell Stem Cell</i> <b>5</b>(2):214&ndash;26; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19664995 19664995]; doi: [https://dx.doi.org/10.1016/j.stem.2009.05.021 10.1016/j.stem.2009.05.021]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19664995 12].
 +
#Tebbe A, Schmidt A, Konstantinidis K, Falb M, Bisle B, Klein C, Aivaliotis M, Kellermann J, Siedler F, Pfeiffer F, Lottspeich F, Oesterhelt D,  (2009) &quot;Life-style changes of a halophilic archaeon analyzed by quantitative proteomics.&quot; <i>Proteomics</i> <b>9</b>(15):3843&ndash;55; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19670246 19670246]; doi: [https://dx.doi.org/10.1002/pmic.200800944 10.1002/pmic.200800944]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19670246 43].
 +
#Casado-Vela J, Rodriguez-Suarez E, Iloro I, Ametzazurra A, Alkorta N, Garc&iacute;a-Velasco JA, Matorras R, Prieto B, Gonz&aacute;lez S, Nagore D, Sim&oacute;n L, Elortza F,  (2009) &quot;Comprehensive proteomic analysis of human endometrial fluid aspirate.&quot; <i>J Proteome Res</i> <b>8</b>(10):4622&ndash;32; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19670903 19670903]; doi: [https://dx.doi.org/10.1021/pr9004426 10.1021/pr9004426]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19670903 4].
 +
#Charles RC, Harris JB, Chase MR, Lebrun LM, Sheikh A, LaRocque RC, Logvinenko T, Rollins SM, Tarique A, Hohmann EL, Rosenberg I, Krastins B, Sarracino DA, Qadri F, Calderwood SB, Ryan ET,  (2009) &quot;Comparative proteomic analysis of the PhoP regulon in Salmonella enterica serovar Typhi versus Typhimurium.&quot; <i>PLoS One</i> <b>4</b>(9):e6994; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19746165 19746165]; doi: [https://dx.doi.org/10.1371/journal.pone.0006994 10.1371/journal.pone.0006994]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19746165 6].
 +
#Pottiez G, Flahaut C, Cecchelli R, Karamanos Y,  (2009) &quot;Understanding the blood-brain barrier using gene and protein expression profiling technologies.&quot; <i>Brain Res Rev</i> <b>62</b>(1):83&ndash;98; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19770003 19770003]; doi: [https://dx.doi.org/10.1016/j.brainresrev.2009.09.004 10.1016/j.brainresrev.2009.09.004]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19770003 6].
 +
#Boersema PJ, Foong LY, Ding VM, Lemeer S, van Breukelen B, Philp R, Boekhorst J, Snel B, den Hertog J, Choo AB, Heck AJ,  (2010) &quot;In-depth qualitative and quantitative profiling of tyrosine phosphorylation using a combination of phosphopeptide immunoaffinity purification and stable isotope dimethyl labeling.&quot; <i>Mol Cell Proteomics</i> <b>9</b>(1):84&ndash;99; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19770167 19770167]; doi: [https://dx.doi.org/10.1074/mcp.M900291-MCP200 10.1074/mcp.M900291-MCP200]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19770167 4].
 +
#Ozl&uuml; N, Monigatti F, Renard BY, Field CM, Steen H, Mitchison TJ, Steen JJ,  (2010) &quot;Binding partner switching on microtubules and aurora-B in the mitosis to cytokinesis transition.&quot; <i>Mol Cell Proteomics</i> <b>9</b>(2):336&ndash;50; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19786723 19786723]; doi: [https://dx.doi.org/10.1074/mcp.M900308-MCP200 10.1074/mcp.M900308-MCP200]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19786723 13].
 +
#Johansen E, Schilling B, Lerch M, Niles RK, Liu H, Li B, Allen S, Hall SC, Witkowska HE, Regnier FE, Gibson BW, Fisher SJ, Drake PM,  (2009) &quot;A lectin HPLC method to enrich selectively-glycosylated peptides from complex biological samples.&quot; <i>J Vis Exp</i> <b></b>(32):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19798022 19798022]; doi: [https://dx.doi.org/10.3791/1398 10.3791/1398]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19798022 83].
 +
#Hahn CK, Berchuck JE, Ross KN, Kakoza RM, Clauser K, Schinzel AC, Ross L, Galinsky I, Davis TN, Silver SJ, Root DE, Stone RM, DeAngelo DJ, Carroll M, Hahn WC, Carr SA, Golub TR, Kung AL, Stegmaier K,  (2009) &quot;Proteomic and genetic approaches identify Syk as an AML target.&quot; <i>Cancer Cell</i> <b>16</b>(4):281&ndash;94; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19800574 19800574]; doi: [https://dx.doi.org/10.1016/j.ccr.2009.08.018 10.1016/j.ccr.2009.08.018]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19800574 8].
 +
#Delmotte N, Knief C, Chaffron S, Innerebner G, Roschitzki B, Schlapbach R, von Mering C, Vorholt JA,  (2009) &quot;Community proteogenomics reveals insights into the physiology of phyllosphere bacteria.&quot; <i>Proc Natl Acad Sci U S A</i> <b>106</b>(38):16428&ndash;33; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19805315 19805315]; doi: [https://dx.doi.org/10.1073/pnas.0905240106 10.1073/pnas.0905240106]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19805315 11].
 +
#Tunica DG, Yin X, Sidibe A, Stegemann C, Nissum M, Zeng L, Brunet M, Mayr M,  (2009) &quot;Proteomic analysis of the secretome of human umbilical vein endothelial cells using a combination of free-flow electrophoresis and nanoflow LC-MS/MS.&quot; <i>Proteomics</i> <b>9</b>(21):4991&ndash;6; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19810032 19810032]; doi: [https://dx.doi.org/10.1002/pmic.200900065 10.1002/pmic.200900065]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19810032 1].
 +
#Mathivanan S, Lim JW, Tauro BJ, Ji H, Moritz RL, Simpson RJ,  (2010) &quot;Proteomics analysis of A33 immunoaffinity-purified exosomes released from the human colon tumor cell line LIM1215 reveals a tissue-specific protein signature.&quot; <i>Mol Cell Proteomics</i> <b>9</b>(2):197&ndash;208; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19837982 19837982]; doi: [https://dx.doi.org/10.1074/mcp.M900152-MCP200 10.1074/mcp.M900152-MCP200]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19837982 84].
 +
#Baudet M, Ortet P, Gaillard JC, Fernandez B, Gu&eacute;rin P, Enjalbal C, Subra G, de Groot A, Barakat M, Dedieu A, Armengaud J,  (2010) &quot;Proteomics-based refinement of Deinococcus deserti genome annotation reveals an unwonted use of non-canonical translation initiation codons.&quot; <i>Mol Cell Proteomics</i> <b>9</b>(2):415&ndash;26; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19875382 19875382]; doi: [https://dx.doi.org/10.1074/mcp.M900359-MCP200 10.1074/mcp.M900359-MCP200]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19875382 19].
 +
#Pitteri SJ, JeBailey L, Fa&ccedil;a VM, Thorpe JD, Silva MA, Ireton RC, Horton MB, Wang H, Pruitt LC, Zhang Q, Cheng KH, Urban N, Hanash SM, Dinulescu DM,  (2009) &quot;Integrated proteomic analysis of human cancer cells and plasma from tumor bearing mice for ovarian cancer biomarker discovery.&quot; <i>PLoS One</i> <b>4</b>(11):e7916; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19936259 19936259]; doi: [https://dx.doi.org/10.1371/journal.pone.0007916 10.1371/journal.pone.0007916]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19936259 144].
 +
#Bilodeau N, Fiset A, Boulanger MC, Bhardwaj S, Winstall E, Lavoie JN, Faure RL,  (2010) &quot;Proteomic analysis of Src family kinases signaling complexes in Golgi/endosomal fractions using a site-selective anti-phosphotyrosine antibody: identification of LRP1-insulin receptor complexes.&quot; <i>J Proteome Res</i> <b>9</b>(2):708&ndash;17; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19947650 19947650]; doi: [https://dx.doi.org/10.1021/pr900481b 10.1021/pr900481b]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19947650 17].
 +
#Mathias RA, Chen YS, Wang B, Ji H, Kapp EA, Moritz RL, Zhu HJ, Simpson RJ,  (2010) &quot;Extracellular remodelling during oncogenic Ras-induced epithelial-mesenchymal transition facilitates MDCK cell migration.&quot; <i>J Proteome Res</i> <b>9</b>(2):1007&ndash;19; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/19954229 19954229]; doi: [https://dx.doi.org/10.1021/pr900907g 10.1021/pr900907g]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/19954229 66].
 +
#Lau TY, Power KA, Dijon S, de Gardelle I, McDonnell S, Duffy MJ, Pennington SR, Gallagher WM,  (2010) &quot;Prioritization of candidate protein biomarkers from an in vitro model system of breast tumor progression toward clinical verification.&quot; <i>J Proteome Res</i> <b>9</b>(3):1450&ndash;9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20000743 20000743]; doi: [https://dx.doi.org/10.1021/pr900989q 10.1021/pr900989q]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20000743 5].
 +
#Chalkley RJ, Medzihradszky KF, Lynn AJ, Baker PR, Burlingame AL,  (2010) &quot;Statistical analysis of Peptide electron transfer dissociation fragmentation mass spectrometry.&quot; <i>Anal Chem</i> <b>82</b>(2):579&ndash;84; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20028093 20028093]; doi: [https://dx.doi.org/10.1021/ac9018582 10.1021/ac9018582]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20028093 2].
 +
#Yin X, Cuello F, Mayr U, Hao Z, Hornshaw M, Ehler E, Avkiran M, Mayr M,  (2010) &quot;Proteomics analysis of the cardiac myofilament subproteome reveals dynamic alterations in phosphatase subunit distribution.&quot; <i>Mol Cell Proteomics</i> <b>9</b>(3):497&ndash;509; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20037178 20037178]; doi: [https://dx.doi.org/10.1074/mcp.M900275-MCP200 10.1074/mcp.M900275-MCP200]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20037178 156].
 +
#Friso G, Majeran W, Huang M, Sun Q, van Wijk KJ,  (2010) &quot;Reconstruction of metabolic pathways, protein expression, and homeostasis machineries across maize bundle sheath and mesophyll chloroplasts: large-scale quantitative proteomics using the first maize genome assembly.&quot; <i>Plant Physiol</i> <b>152</b>(3):1219&ndash;50; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20089766 20089766]; doi: [https://dx.doi.org/10.1104/pp.109.152694 10.1104/pp.109.152694]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20089766 301].
 +
#Gant-Branum RL, Broussard JA, Mahsut A, Webb DJ, McLean JA,  (2010) &quot;Identification of phosphorylation sites within the signaling adaptor APPL1 by mass spectrometry.&quot; <i>J Proteome Res</i> <b>9</b>(3):1541&ndash;8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20095645 20095645]; doi: [https://dx.doi.org/10.1021/pr901043e 10.1021/pr901043e]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20095645 8].
 +
#Paweletz CP, Wiener MC, Bondarenko AY, Yates NA, Song Q, Liaw A, Lee AY, Hunt BT, Henle ES, Meng F, Sleph HF, Holahan M, Sankaranarayanan S, Simon AJ, Settlage RE, Sachs JR, Shearman M, Sachs AB, Cook JJ, Hendrickson RC,  (2010) &quot;Application of an end-to-end biomarker discovery platform to identify target engagement markers in cerebrospinal fluid by high resolution differential mass spectrometry.&quot; <i>J Proteome Res</i> <b>9</b>(3):1392&ndash;401; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20095649 20095649]; doi: [https://dx.doi.org/10.1021/pr900925d 10.1021/pr900925d]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20095649 144].
 +
#Guo X, Shen J, Xia Z, Zhang R, Zhang P, Zhao C, Xing J, Chen L, Chen W, Lin M, Huo R, Su B, Zhou Z, Sha J,  (2010) &quot;Proteomic analysis of proteins involved in spermiogenesis in mouse.&quot; <i>J Proteome Res</i> <b>9</b>(3):1246&ndash;56; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20099899 20099899]; doi: [https://dx.doi.org/10.1021/pr900735k 10.1021/pr900735k]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20099899 1].
 +
#Chaerkady R, Kerr CL, Kandasamy K, Marimuthu A, Gearhart JD, Pandey A,  (2010) &quot;Comparative proteomics of human embryonic stem cells and embryonal carcinoma cells.&quot; <i>Proteomics</i> <b>10</b>(7):1359&ndash;73; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20104618 20104618]; doi: [https://dx.doi.org/10.1002/pmic.200900483 10.1002/pmic.200900483]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20104618 3].
 +
#Burgess EF, Ham AJ, Tabb DL, Billheimer D, Roth BJ, Chang SS, Cookson MS, Hinton TJ, Cheek KL, Hill S, Pietenpol JA,  (2008) &quot;Prostate cancer serum biomarker discovery through proteomic analysis of alpha-2 macroglobulin protein complexes.&quot; <i>Proteomics Clin Appl</i> <b>2</b>(9):1223; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20107526 20107526]; doi: [https://dx.doi.org/10.1002/prca.200780073 10.1002/prca.200780073]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20107526 115].
 +
#Swaney DL, Wenger CD, Coon JJ,  (2010) &quot;Value of using multiple proteases for large-scale mass spectrometry-based proteomics.&quot; <i>J Proteome Res</i> <b>9</b>(3):1323&ndash;9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20113005 20113005]; doi: [https://dx.doi.org/10.1021/pr900863u 10.1021/pr900863u]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20113005 15].
 +
#Rinschen MM, Yu MJ, Wang G, Boja ES, Hoffert JD, Pisitkun T, Knepper MA,  (2010) &quot;Quantitative phosphoproteomic analysis reveals vasopressin V2-receptor-dependent signaling pathways in renal collecting duct cells.&quot; <i>Proc Natl Acad Sci U S A</i> <b>107</b>(8):3882&ndash;7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20139300 20139300]; doi: [https://dx.doi.org/10.1073/pnas.0910646107 10.1073/pnas.0910646107]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20139300 117].
 +
#Looso M, Borchardt T, Kr&uuml;ger M, Braun T,  (2010) &quot;Advanced identification of proteins in uncharacterized proteomes by pulsed in vivo stable isotope labeling-based mass spectrometry.&quot; <i>Mol Cell Proteomics</i> <b>9</b>(6):1157&ndash;66; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20139370 20139370]; doi: [https://dx.doi.org/10.1074/mcp.M900426-MCP200 10.1074/mcp.M900426-MCP200]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20139370 23].
 +
#Tomazella GG, daSilva I, Thom&eacute; CH, Greene LJ, Koehler CJ, Thiede B, Wiker HG, de Souza GA,  (2010) &quot;Analysis of detergent-insoluble and whole cell lysate fractions of resting neutrophils using high-resolution mass spectrometry.&quot; <i>J Proteome Res</i> <b>9</b>(4):2030&ndash;6; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20158270 20158270]; doi: [https://dx.doi.org/10.1021/pr1000253 10.1021/pr1000253]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20158270 2].
 +
#Sharma K, Kumar C, K&eacute;ri G, Breitkopf SB, Oppermann FS, Daub H,  (2010) &quot;Quantitative analysis of kinase-proximal signaling in lipopolysaccharide-induced innate immune response.&quot; <i>J Proteome Res</i> <b>9</b>(5):2539&ndash;49; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20222745 20222745]; doi: [https://dx.doi.org/10.1021/pr901192p 10.1021/pr901192p]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20222745 73].
 +
#Baiges I, Palmfeldt J, Blad&eacute; C, Gregersen N, Arola L,  (2010) &quot;Lipogenesis is decreased by grape seed proanthocyanidins according to liver proteomics of rats fed a high fat diet.&quot; <i>Mol Cell Proteomics</i> <b>9</b>(7):1499&ndash;513; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20332082 20332082]; doi: [https://dx.doi.org/10.1074/mcp.M000055-MCP201 10.1074/mcp.M000055-MCP201]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20332082 2].
 +
#Drake RR, Elschenbroich S, Lopez-Perez O, Kim Y, Ignatchenko V, Ignatchenko A, Nyalwidhe JO, Basu G, Wilkins CE, Gjurich B, Lance RS, Semmes OJ, Medin JA, Kislinger T,  (2010) &quot;In-depth proteomic analyses of direct expressed prostatic secretions.&quot; <i>J Proteome Res</i> <b>9</b>(5):2109&ndash;16; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20334419 20334419]; doi: [https://dx.doi.org/10.1021/pr1001498 10.1021/pr1001498]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20334419 9].
 +
#Ettwig KF, Butler MK, Le Paslier D, Pelletier E, Mangenot S, Kuypers MM, Schreiber F, Dutilh BE, Zedelius J, de Beer D, Gloerich J, Wessels HJ, van Alen T, Luesken F, Wu ML, van de Pas-Schoonen KT, Op den Camp HJ, Janssen-Megens EM, Francoijs KJ, Stunnenberg H, Weissenbach J, Jetten MS, Strous M,  (2010) &quot;Nitrite-driven anaerobic methane oxidation by oxygenic bacteria.&quot; <i>Nature</i> <b>464</b>(7288):543&ndash;8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20336137 20336137]; doi: [https://dx.doi.org/10.1038/nature08883 10.1038/nature08883]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20336137 2].
 +
#Pardo M, Lang B, Yu L, Prosser H, Bradley A, Babu MM, Choudhary J,  (2010) &quot;An expanded Oct4 interaction network: implications for stem cell biology, development, and disease.&quot; <i>Cell Stem Cell</i> <b>6</b>(4):382&ndash;95; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20362542 20362542]; doi: [https://dx.doi.org/10.1016/j.stem.2010.03.004 10.1016/j.stem.2010.03.004]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20362542 7].
 +
#Geiger T, Cox J, Ostasiewicz P, Wisniewski JR, Mann M,  (2010) &quot;Super-SILAC mix for quantitative proteomics of human tumor tissue.&quot; <i>Nat Methods</i> <b>7</b>(5):383&ndash;5; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20364148 20364148]; doi: [https://dx.doi.org/10.1038/nmeth.1446 10.1038/nmeth.1446]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20364148 116].
 +
#Clair G, Roussi S, Armengaud J, Duport C,  (2010) &quot;Expanding the known repertoire of virulence factors produced by Bacillus cereus through early secretome profiling in three redox conditions.&quot; <i>Mol Cell Proteomics</i> <b>9</b>(7):1486&ndash;98; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20368289 20368289]; doi: [https://dx.doi.org/10.1074/mcp.M000027-MCP201 10.1074/mcp.M000027-MCP201]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20368289 27].
 +
#Aguiar M, Haas W, Beausoleil SA, Rush J, Gygi SP,  (2010) &quot;Gas-phase rearrangements do not affect site localization reliability in phosphoproteomics data sets.&quot; <i>J Proteome Res</i> <b>9</b>(6):3103&ndash;7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20377248 20377248]; doi: [https://dx.doi.org/10.1021/pr1000225 10.1021/pr1000225]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20377248 13].
 +
#Vandenborre G, Van Damme EJ, Ghesqui&egrave;re B, Menschaert G, Hamshou M, Rao RN, Gevaert K, Smagghe G,  (2010) &quot;Glycosylation signatures in Drosophila: fishing with lectins.&quot; <i>J Proteome Res</i> <b>9</b>(6):3235&ndash;42; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20387871 20387871]; doi: [https://dx.doi.org/10.1021/pr1001753 10.1021/pr1001753]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20387871 1].
 +
#Bakthavatsalam D, Gomer RH,  (2010) &quot;The secreted proteome profile of developing Dictyostelium discoideum cells.&quot; <i>Proteomics</i> <b>10</b>(13):2556&ndash;9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20422638 20422638]; doi: [https://dx.doi.org/10.1002/pmic.200900516 10.1002/pmic.200900516]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20422638 1].
 +
#Olinares PD, Ponnala L, van Wijk KJ,  (2010) &quot;Megadalton complexes in the chloroplast stroma of Arabidopsis thaliana characterized by size exclusion chromatography, mass spectrometry, and hierarchical clustering.&quot; <i>Mol Cell Proteomics</i> <b>9</b>(7):1594&ndash;615; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20423899 20423899]; doi: [https://dx.doi.org/10.1074/mcp.M000038-MCP201 10.1074/mcp.M000038-MCP201]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20423899 110].
 +
#McManus CA, Polden J, Cotter DR, Dunn MJ,  (2010) &quot;Two-dimensional reference map for the basic proteome of the human dorsolateral prefrontal cortex (dlPFC) of the prefrontal lobe region of the brain.&quot; <i>Proteomics</i> <b>10</b>(13):2551&ndash;5; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20432482 20432482]; doi: [https://dx.doi.org/10.1002/pmic.200900705 10.1002/pmic.200900705]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20432482 9].
 +
#Renard BY, Timm W, Kirchner M, Steen JA, Hamprecht FA, Steen H,  (2010) &quot;Estimating the confidence of peptide identifications without decoy databases.&quot; <i>Anal Chem</i> <b>82</b>(11):4314&ndash;8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20455556 20455556]; doi: [https://dx.doi.org/10.1021/ac902892j 10.1021/ac902892j]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20455556 58].
 +
#Hah N, Kolkman A, Ruhl DD, Pijnappel WW, Heck AJ, Timmers HT, Kraus WL,  (2010) &quot;A role for BAF57 in cell cycle-dependent transcriptional regulation by the SWI/SNF chromatin remodeling complex.&quot; <i>Cancer Res</i> <b>70</b>(11):4402&ndash;11; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20460533 20460533]; doi: [https://dx.doi.org/10.1158/0008-5472.CAN-09-2767 10.1158/0008-5472.CAN-09-2767]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20460533 2].
 +
#Choudhary C, Mann M,  (2010) &quot;Decoding signalling networks by mass spectrometry-based proteomics.&quot; <i>Nat Rev Mol Cell Biol</i> <b>11</b>(6):427&ndash;39; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20461098 20461098]; doi: [https://dx.doi.org/10.1038/nrm2900 10.1038/nrm2900]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20461098 17].
 +
#Casado-Vela J, Muries B, Carvajal M, Iloro I, Elortza F, Mart&iacute;nez-Ballesta MC,  (2010) &quot;Analysis of root plasma membrane aquaporins from Brassica oleracea: post-translational modifications, de novo sequencing and detection of isoforms by high resolution mass spectrometry.&quot; <i>J Proteome Res</i> <b>9</b>(7):3479&ndash;94; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20462273 20462273]; doi: [https://dx.doi.org/10.1021/pr901150g 10.1021/pr901150g]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20462273 8].
 +
#Hubner NC, Bird AW, Cox J, Splettstoesser B, Bandilla P, Poser I, Hyman A, Mann M,  (2010) &quot;Quantitative proteomics combined with BAC TransgeneOmics reveals in vivo protein interactions.&quot; <i>J Cell Biol</i> <b>189</b>(4):739&ndash;54; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20479470 20479470]; doi: [https://dx.doi.org/10.1083/jcb.200911091 10.1083/jcb.200911091]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20479470 61].
 +
#Peng L, Kapp EA, Feny&ouml; D, Kwon MS, Jiang P, Wu S, Jiang Y, Aguilar MI, Ahmed N, Baker MS, Cai Z, Chen YJ, Van Chi P, Chung MC, He F, Len AC, Liao PC, Nakamura K, Ngai SM, Paik YK, Pan TL, Poon TC, Salekdeh GH, Simpson RJ, Sirdeshmukh R, Srisomsap C, Svasti J, Tyan YC, Dreyer FS, McLauchlan D, Rawson P, Jordan TW,  (2010) &quot;The Asia Oceania Human Proteome Organisation Membrane Proteomics Initiative. Preparation and characterisation of the carbonate-washed membrane standard.&quot; <i>Proteomics</i> <b>10</b>(22):4142&ndash;8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20486120 20486120]; doi: [https://dx.doi.org/10.1002/pmic.201000126 10.1002/pmic.201000126]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20486120 2].
 +
#Breitkreutz A, Choi H, Sharom JR, Boucher L, Neduva V, Larsen B, Lin ZY, Breitkreutz BJ, Stark C, Liu G, Ahn J, Dewar-Darch D, Reguly T, Tang X, Almeida R, Qin ZS, Pawson T, Gingras AC, Nesvizhskii AI, Tyers M,  (2010) &quot;A global protein kinase and phosphatase interaction network in yeast.&quot; <i>Science</i> <b>328</b>(5981):1043&ndash;6; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20489023 20489023]; doi: [https://dx.doi.org/10.1126/science.1176495 10.1126/science.1176495]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20489023 571].
 +
#Pelletier S, Schuurman KG, Berkers CR, Ovaa H, Heck AJ, Raijmakers R,  (2010) &quot;Quantifying cross-tissue diversity in proteasome complexes by mass spectrometry.&quot; <i>Mol Biosyst</i> <b>6</b>(8):1450&ndash;3; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20498902 20498902]; doi: [https://dx.doi.org/10.1039/c004989a 10.1039/c004989a]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20498902 24].
 +
#Chen YS, Mathias RA, Mathivanan S, Kapp EA, Moritz RL, Zhu HJ, Simpson RJ,  (2011) &quot;Proteomics profiling of Madin-Darby canine kidney plasma membranes reveals Wnt-5a involvement during oncogenic H-Ras/TGF-beta-mediated epithelial-mesenchymal transition.&quot; <i>Mol Cell Proteomics</i> <b>10</b>(2):M110.001131; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20511395 20511395]; doi: [https://dx.doi.org/10.1074/mcp.M110.001131 10.1074/mcp.M110.001131]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20511395 100].
 +
#Gundry RL, Tchernyshyov I, Sheng S, Tarasova Y, Raginski K, Boheler KR, Van Eyk JE,  (2010) &quot;Expanding the mouse embryonic stem cell proteome: combining three proteomic approaches.&quot; <i>Proteomics</i> <b>10</b>(14):2728&ndash;32; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20512790 20512790]; doi: [https://dx.doi.org/10.1002/pmic.201000039 10.1002/pmic.201000039]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20512790 16].
 +
#O&#39;Brien RN, Shen Z, Tachikawa K, Lee PA, Briggs SP,  (2010) &quot;Quantitative proteome analysis of pluripotent cells by iTRAQ mass tagging reveals post-transcriptional regulation of proteins required for ES cell self-renewal.&quot; <i>Mol Cell Proteomics</i> <b>9</b>(10):2238&ndash;51; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20513800 20513800]; doi: [https://dx.doi.org/10.1074/mcp.M110.000281 10.1074/mcp.M110.000281]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20513800 8].
 +
#Sury MD, Chen JX, Selbach M,  (2010) &quot;The SILAC fly allows for accurate protein quantification in vivo.&quot; <i>Mol Cell Proteomics</i> <b>9</b>(10):2173&ndash;83; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20525996 20525996]; doi: [https://dx.doi.org/10.1074/mcp.M110.000323 10.1074/mcp.M110.000323]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20525996 120].
 +
#Kallappagoudar S, Varma P, Pathak RU, Senthilkumar R, Mishra RK,  (2010) &quot;Nuclear matrix proteome analysis of Drosophila melanogaster.&quot; <i>Mol Cell Proteomics</i> <b>9</b>(9):2005&ndash;18; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20530634 20530634]; doi: [https://dx.doi.org/10.1074/mcp.M110.001362 10.1074/mcp.M110.001362]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20530634 19].
 +
#Didangelos A, Yin X, Mandal K, Baumert M, Jahangiri M, Mayr M,  (2010) &quot;Proteomics characterization of extracellular space components in the human aorta.&quot; <i>Mol Cell Proteomics</i> <b>9</b>(9):2048&ndash;62; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20551380 20551380]; doi: [https://dx.doi.org/10.1074/mcp.M110.001693 10.1074/mcp.M110.001693]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20551380 108].
 +
#Kozielski F, Riaz T, DeBonis S, Koehler CJ, Kroening M, Panse I, Strozynski M, Donaldson IM, Thiede B,  (2011) &quot;Proteome analysis of microtubule-associated proteins and their interacting partners from mammalian brain.&quot; <i>Amino Acids</i> <b>41</b>(2):363&ndash;85; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20567863 20567863]; doi: [https://dx.doi.org/10.1007/s00726-010-0649-5 10.1007/s00726-010-0649-5]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20567863 15].
 +
#Andrews G, Lewis D, Notey J, Kelly R, Muddiman D,  (2010) &quot;Part II: defining and quantifying individual and co-cultured intracellular proteomes of two thermophilic microorganisms by GeLC-MS2 and spectral counting.&quot; <i>Anal Bioanal Chem</i> <b>398</b>(1):391&ndash;404; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20582400 20582400]; doi: [https://dx.doi.org/10.1007/s00216-010-3929-8 10.1007/s00216-010-3929-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20582400 48].
 +
#Li M, Gray W, Zhang H, Chung CH, Billheimer D, Yarbrough WG, Liebler DC, Shyr Y, Slebos RJ,  (2010) &quot;Comparative shotgun proteomics using spectral count data and quasi-likelihood modeling.&quot; <i>J Proteome Res</i> <b>9</b>(8):4295&ndash;305; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20586475 20586475]; doi: [https://dx.doi.org/10.1021/pr100527g 10.1021/pr100527g]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20586475 153].
 +
#Wolschin F, Mutti NS, Amdam GV,  (2011) &quot;Insulin receptor substrate influences female caste development in honeybees.&quot; <i>Biol Lett</i> <b>7</b>(1):112&ndash;5; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20591854 20591854]; doi: [https://dx.doi.org/10.1098/rsbl.2010.0463 10.1098/rsbl.2010.0463]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20591854 23].
 +
#Bezstarosti K, Ghamari A, Grosveld FG, Demmers JA,  (2010) &quot;Differential proteomics based on 18O labeling to determine the cyclin dependent kinase 9 interactome.&quot; <i>J Proteome Res</i> <b>9</b>(9):4464&ndash;75; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20593818 20593818]; doi: [https://dx.doi.org/10.1021/pr100217d 10.1021/pr100217d]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20593818 1].
 +
#Lee CP, Eubel H, Millar AH,  (2010) &quot;Diurnal changes in mitochondrial function reveal daily optimization of light and dark respiratory metabolism in Arabidopsis.&quot; <i>Mol Cell Proteomics</i> <b>9</b>(10):2125&ndash;39; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20601493 20601493]; doi: [https://dx.doi.org/10.1074/mcp.M110.001214 10.1074/mcp.M110.001214]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20601493 55].
 +
#Azimzadeh O, Barjaktarovic Z, Aubele M, Calzada-Wack J, Sarioglu H, Atkinson MJ, Tapio S,  (2010) &quot;Formalin-fixed paraffin-embedded (FFPE) proteome analysis using gel-free and gel-based proteomics.&quot; <i>J Proteome Res</i> <b>9</b>(9):4710&ndash;20; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20604508 20604508]; doi: [https://dx.doi.org/10.1021/pr1004168 10.1021/pr1004168]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20604508 11].
 +
#DeMarco R, Mathieson W, Manuel SJ, Dillon GP, Curwen RS, Ashton PD, Ivens AC, Berriman M, Verjovski-Almeida S, Wilson RA,  (2010) &quot;Protein variation in blood-dwelling schistosome worms generated by differential splicing of micro-exon gene transcripts.&quot; <i>Genome Res</i> <b>20</b>(8):1112&ndash;21; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20606017 20606017]; doi: [https://dx.doi.org/10.1101/gr.100099.109 10.1101/gr.100099.109]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20606017 1].
 +
#Magdeldin S, Li H, Yoshida Y, Enany S, Zhang Y, Xu B, Fujinaka H, Yaoita E, Yamamoto T,  (2010) &quot;Comparison of two dimensional electrophoresis mouse colon proteomes before and after knocking out Aquaporin 8.&quot; <i>J Proteomics</i> <b>73</b>(10):2031&ndash;40; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20619372 20619372]; doi: [https://dx.doi.org/10.1016/j.jprot.2010.06.010 10.1016/j.jprot.2010.06.010]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20619372 5].
 +
#Andrews G, Lewis D, Notey J, Kelly R, Muddiman D,  (2010) &quot;Part I: characterization of the extracellular proteome of the extreme thermophile Caldicellulosiruptor saccharolyticus by GeLC-MS2.&quot; <i>Anal Bioanal Chem</i> <b>398</b>(1):377&ndash;89; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20623222 20623222]; doi: [https://dx.doi.org/10.1007/s00216-010-3955-6 10.1007/s00216-010-3955-6]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20623222 58].
 +
#Impens F, Colaert N, Helsens K, Ghesqui&egrave;re B, Timmerman E, De Bock PJ, Chain BM, Vandekerckhove J, Gevaert K,  (2010) &quot;A quantitative proteomics design for systematic identification of protease cleavage events.&quot; <i>Mol Cell Proteomics</i> <b>9</b>(10):2327&ndash;33; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20627866 20627866]; doi: [https://dx.doi.org/10.1074/mcp.M110.001271 10.1074/mcp.M110.001271]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20627866 3].
 +
#M&auml;usbacher N, Schreiber TB, Daub H,  (2010) &quot;Glycoprotein capture and quantitative phosphoproteomics indicate coordinated regulation of cell migration upon lysophosphatidic acid stimulation.&quot; <i>Mol Cell Proteomics</i> <b>9</b>(11):2337&ndash;53; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20639409 20639409]; doi: [https://dx.doi.org/10.1074/mcp.M110.000737 10.1074/mcp.M110.000737]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20639409 70].
 +
#Xu G, Paige JS, Jaffrey SR,  (2010) &quot;Global analysis of lysine ubiquitination by ubiquitin remnant immunoaffinity profiling.&quot; <i>Nat Biotechnol</i> <b>28</b>(8):868&ndash;73; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20639865 20639865]; doi: [https://dx.doi.org/10.1038/nbt.1654 10.1038/nbt.1654]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20639865 2].
 +
#Tu C, Rudnick PA, Martinez MY, Cheek KL, Stein SE, Slebos RJ, Liebler DC,  (2010) &quot;Depletion of abundant plasma proteins and limitations of plasma proteomics.&quot; <i>J Proteome Res</i> <b>9</b>(10):4982&ndash;91; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20677825 20677825]; doi: [https://dx.doi.org/10.1021/pr100646w 10.1021/pr100646w]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20677825 207].
 +
#Gnad F, Forner F, Zielinska DF, Birney E, Gunawardena J, Mann M,  (2010) &quot;Evolutionary constraints of phosphorylation in eukaryotes, prokaryotes, and mitochondria.&quot; <i>Mol Cell Proteomics</i> <b>9</b>(12):2642&ndash;53; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20688971 20688971]; doi: [https://dx.doi.org/10.1074/mcp.M110.001594 10.1074/mcp.M110.001594]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20688971 18].
 +
#Korfali N, Wilkie GS, Swanson SK, Srsen V, Batrakou DG, Fairley EA, Malik P, Zuleger N, Goncharevich A, de Las Heras J, Kelly DA, Kerr AR, Florens L, Schirmer EC,  (2010) &quot;The leukocyte nuclear envelope proteome varies with cell activation and contains novel transmembrane proteins that affect genome architecture.&quot; <i>Mol Cell Proteomics</i> <b>9</b>(12):2571&ndash;85; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20693407 20693407]; doi: [https://dx.doi.org/10.1074/mcp.M110.002915 10.1074/mcp.M110.002915]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20693407 8].
 +
#Victor KJ, Fennell AY, Grimplet J,  (2010) &quot;Proteomic analysis of shoot tissue during photoperiod induced growth cessation in V. riparia Michx. grapevines.&quot; <i>Proteome Sci</i> <b>8</b>:44; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20704748 20704748]; doi: [https://dx.doi.org/10.1186/1477-5956-8-44 10.1186/1477-5956-8-44]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20704748 2].
 +
#Gunaratne R, Braucht DW, Rinschen MM, Chou CL, Hoffert JD, Pisitkun T, Knepper MA,  (2010) &quot;Quantitative phosphoproteomic analysis reveals cAMP/vasopressin-dependent signaling pathways in native renal thick ascending limb cells.&quot; <i>Proc Natl Acad Sci U S A</i> <b>107</b>(35):15653&ndash;8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20713729 20713729]; doi: [https://dx.doi.org/10.1073/pnas.1007424107 10.1073/pnas.1007424107]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20713729 4].
 +
#Kline KG, Barrett-Wilt GA, Sussman MR,  (2010) &quot;In planta changes in protein phosphorylation induced by the plant hormone abscisic acid.&quot; <i>Proc Natl Acad Sci U S A</i> <b>107</b>(36):15986&ndash;91; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20733066 20733066]; doi: [https://dx.doi.org/10.1073/pnas.1007879107 10.1073/pnas.1007879107]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20733066 48].
 +
#Franklin S, Zhang MJ, Chen H, Paulsson AK, Mitchell-Jordan SA, Li Y, Ping P, Vondriska TM,  (2011) &quot;Specialized compartments of cardiac nuclei exhibit distinct proteomic anatomy.&quot; <i>Mol Cell Proteomics</i> <b>10</b>(1):M110.000703; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20807835 20807835]; doi: [https://dx.doi.org/10.1074/mcp.M110.000703 10.1074/mcp.M110.000703]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20807835 136].
 +
#Alvarado R, Tran D, Ching B, Phinney BS,  (2010) &quot;A comparative study of in-gel digestions using microwave and pressure-accelerated technologies.&quot; <i>J Biomol Tech</i> <b>21</b>(3):148&ndash;55; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20808644 20808644]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20808644 85].
 +
#Wei Y, Tong J, Taylor P, Strumpf D, Ignatchenko V, Pham NA, Yanagawa N, Liu G, Jurisica I, Shepherd FA, Tsao MS, Kislinger T, Moran MF,  (2011) &quot;Primary tumor xenografts of human lung adeno and squamous cell carcinoma express distinct proteomic signatures.&quot; <i>J Proteome Res</i> <b>10</b>(1):161&ndash;74; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20815376 20815376]; doi: [https://dx.doi.org/10.1021/pr100491e 10.1021/pr100491e]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20815376 150].
 +
#Patel VN, Bebek G, Mariadason JM, Wang D, Augenlicht LH, Chance MR,  (2010) &quot;Prediction and testing of biological networks underlying intestinal cancer.&quot; <i>PLoS One</i> <b>5</b>(9):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20824133 20824133]; doi: [https://dx.doi.org/10.1371/journal.pone.0012497 10.1371/journal.pone.0012497]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20824133 1].
 +
#Kim S, Mischerikow N, Bandeira N, Navarro JD, Wich L, Mohammed S, Heck AJ, Pevzner PA,  (2010) &quot;The generating function of CID, ETD, and CID/ETD pairs of tandem mass spectra: applications to database search.&quot; <i>Mol Cell Proteomics</i> <b>9</b>(12):2840&ndash;52; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20829449 20829449]; doi: [https://dx.doi.org/10.1074/mcp.M110.003731 10.1074/mcp.M110.003731]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20829449 48].
 +
#Collier TS, Sarkar P, Franck WL, Rao BM, Dean RA, Muddiman DC,  (2010) &quot;Direct comparison of stable isotope labeling by amino acids in cell culture and spectral counting for quantitative proteomics.&quot; <i>Anal Chem</i> <b>82</b>(20):8696&ndash;702; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20845935 20845935]; doi: [https://dx.doi.org/10.1021/ac101978b 10.1021/ac101978b]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20845935 39].
 +
#Vermeulen M, Eberl HC, Matarese F, Marks H, Denissov S, Butter F, Lee KK, Olsen JV, Hyman AA, Stunnenberg HG, Mann M,  (2010) &quot;Quantitative interaction proteomics and genome-wide profiling of epigenetic histone marks and their readers.&quot; <i>Cell</i> <b>142</b>(6):967&ndash;80; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20850016 20850016]; doi: [https://dx.doi.org/10.1016/j.cell.2010.08.020 10.1016/j.cell.2010.08.020]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20850016 92].
 +
#Wegener KM, Singh AK, Jacobs JM, Elvitigala T, Welsh EA, Keren N, Gritsenko MA, Ghosh BK, Camp DG 2nd, Smith RD, Pakrasi HB,  (2010) &quot;Global proteomics reveal an atypical strategy for carbon/nitrogen assimilation by a cyanobacterium under diverse environmental perturbations.&quot; <i>Mol Cell Proteomics</i> <b>9</b>(12):2678&ndash;89; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20858728 20858728]; doi: [https://dx.doi.org/10.1074/mcp.M110.000109 10.1074/mcp.M110.000109]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20858728 278].
 +
#Nagaraj N, D&#39;Souza RC, Cox J, Olsen JV, Mann M,  (2010) &quot;Feasibility of large-scale phosphoproteomics with higher energy collisional dissociation fragmentation.&quot; <i>J Proteome Res</i> <b>9</b>(12):6786&ndash;94; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20873877 20873877]; doi: [https://dx.doi.org/10.1021/pr100637q 10.1021/pr100637q]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20873877 25].
 +
#Sun RX, Dong MQ, Song CQ, Chi H, Yang B, Xiu LY, Tao L, Jing ZY, Liu C, Wang LH, Fu Y, He SM,  (2010) &quot;Improved peptide identification for proteomic analysis based on comprehensive characterization of electron transfer dissociation spectra.&quot; <i>J Proteome Res</i> <b>9</b>(12):6354&ndash;67; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20883037 20883037]; doi: [https://dx.doi.org/10.1021/pr100648r 10.1021/pr100648r]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20883037 69].
 +
#Stone MD, Odland RM, McGowan T, Onsongo G, Tang C, Rhodus NL, Jagtap P, Bandhakavi S, Griffin TJ,  (2010) &quot;Novel In Situ Collection of Tumor Interstitial Fluid from a Head and Neck Squamous Carcinoma Reveals a Unique Proteome with Diagnostic Potential.&quot; <i>Clin Proteomics</i> <b>6</b>(3):75&ndash;82; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20930922 20930922]; doi: [https://dx.doi.org/10.1007/s12014-010-9050-3 10.1007/s12014-010-9050-3]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20930922 1].
 +
#Rice RH, Xia Y, Alvarado RJ, Phinney BS,  (2010) &quot;Proteomic analysis of human nail plate.&quot; <i>J Proteome Res</i> <b>9</b>(12):6752&ndash;8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20939611 20939611]; doi: [https://dx.doi.org/10.1021/pr1009349 10.1021/pr1009349]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20939611 40].
 +
#Khositseth S, Pisitkun T, Slentz DH, Wang G, Hoffert JD, Knepper MA, Yu MJ,  (2011) &quot;Quantitative protein and mRNA profiling shows selective post-transcriptional control of protein expression by vasopressin in kidney cells.&quot; <i>Mol Cell Proteomics</i> <b>10</b>(1):M110.004036; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20940332 20940332]; doi: [https://dx.doi.org/10.1074/mcp.M110.004036 10.1074/mcp.M110.004036]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20940332 5].
 +
#Bowyer PW, Simon GM, Cravatt BF, Bogyo M,  (2011) &quot;Global profiling of proteolysis during rupture of Plasmodium falciparum from the host erythrocyte.&quot; <i>Mol Cell Proteomics</i> <b>10</b>(5):M110.001636; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20943600 20943600]; doi: [https://dx.doi.org/10.1074/mcp.M110.001636 10.1074/mcp.M110.001636]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20943600 760].
 +
#Dedieu A, Gaillard JC, Pourcher T, Darrouzet E, Armengaud J,  (2011) &quot;Revisiting iodination sites in thyroglobulin with an organ-oriented shotgun strategy.&quot; <i>J Biol Chem</i> <b>286</b>(1):259&ndash;69; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20978121 20978121]; doi: [https://dx.doi.org/10.1074/jbc.M110.159483 10.1074/jbc.M110.159483]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/20978121 14].
 +
#Bartke T, Vermeulen M, Xhemalce B, Robson SC, Mann M, Kouzarides T,  (2010) &quot;Nucleosome-interacting proteins regulated by DNA and histone methylation.&quot; <i>Cell</i> <b>143</b>(3):470&ndash;84; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21029866 21029866]; doi: [https://dx.doi.org/10.1016/j.cell.2010.10.012 10.1016/j.cell.2010.10.012]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21029866 160].
 +
#de Souza GA, Arntzen M&Oslash;, Fortuin S, Sch&uuml;rch AC, M&aring;len H, McEvoy CR, van Soolingen D, Thiede B, Warren RM, Wiker HG,  (2011) &quot;Proteogenomic analysis of polymorphisms and gene annotation divergences in prokaryotes using a clustered mass spectrometry-friendly database.&quot; <i>Mol Cell Proteomics</i> <b>10</b>(1):M110.002527; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21030493 21030493]; doi: [https://dx.doi.org/10.1074/mcp.M110.002527 10.1074/mcp.M110.002527]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21030493 6].
 +
#Murray CI, Kane LA, Uhrigshardt H, Wang SB, Van Eyk JE,  (2011) &quot;Site-mapping of in vitro S-nitrosation in cardiac mitochondria: implications for cardioprotection.&quot; <i>Mol Cell Proteomics</i> <b>10</b>(3):M110.004721; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21036925 21036925]; doi: [https://dx.doi.org/10.1074/mcp.M110.004721 10.1074/mcp.M110.004721]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21036925 36].
 +
#Walther DM, Mann M,  (2011) &quot;Accurate quantification of more than 4000 mouse tissue proteins reveals minimal proteome changes during aging.&quot; <i>Mol Cell Proteomics</i> <b>10</b>(2):M110.004523; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21048193 21048193]; doi: [https://dx.doi.org/10.1074/mcp.M110.004523 10.1074/mcp.M110.004523]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21048193 119].
 +
#Murphy JP, Pinto DM,  (2011) &quot;Targeted proteomic analysis of glycolysis in cancer cells.&quot; <i>J Proteome Res</i> <b>10</b>(2):604&ndash;13; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21058741 21058741]; doi: [https://dx.doi.org/10.1021/pr100774f 10.1021/pr100774f]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21058741 1].
 +
#Li YF, Arnold RJ, Tang H, Radivojac P,  (2010) &quot;The importance of peptide detectability for protein identification, quantification, and experiment design in MS/MS proteomics.&quot; <i>J Proteome Res</i> <b>9</b>(12):6288&ndash;97; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21067214 21067214]; doi: [https://dx.doi.org/10.1021/pr1005586 10.1021/pr1005586]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21067214 20].
 +
#Vranakis I, De Bock PJ, Papadioti A, Tselentis Y, Gevaert K, Tsiotis G, Psaroulaki A,  (2011) &quot;Identification of potentially involved proteins in levofloxacin resistance mechanisms in Coxiella burnetii.&quot; <i>J Proteome Res</i> <b>10</b>(2):756&ndash;62; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21070068 21070068]; doi: [https://dx.doi.org/10.1021/pr100906v 10.1021/pr100906v]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21070068 1].
 +
#Angel TE, Luft BJ, Yang X, Nicora CD, Camp DG 2nd, Jacobs JM, Smith RD,  (2010) &quot;Proteome analysis of Borrelia burgdorferi response to environmental change.&quot; <i>PLoS One</i> <b>5</b>(11):e13800; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21072190 21072190]; doi: [https://dx.doi.org/10.1371/journal.pone.0013800 10.1371/journal.pone.0013800]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21072190 70].
 +
#Majeran W, Friso G, Ponnala L, Connolly B, Huang M, Reidel E, Zhang C, Asakura Y, Bhuiyan NH, Sun Q, Turgeon R, van Wijk KJ,  (2010) &quot;Structural and metabolic transitions of C4 leaf development and differentiation defined by microscopy and quantitative proteomics in maize.&quot; <i>Plant Cell</i> <b>22</b>(11):3509&ndash;42; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21081695 21081695]; doi: [https://dx.doi.org/10.1105/tpc.110.079764 10.1105/tpc.110.079764]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21081695 453].
 +
#Valgepea K, Adamberg K, Nahku R, Lahtvee PJ, Arike L, Vilu R,  (2010) &quot;Systems biology approach reveals that overflow metabolism of acetate in Escherichia coli is triggered by carbon catabolite repression of acetyl-CoA synthetase.&quot; <i>BMC Syst Biol</i> <b>4</b>:166; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21122111 21122111]; doi: [https://dx.doi.org/10.1186/1752-0509-4-166 10.1186/1752-0509-4-166]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21122111 22].
 +
#Helbig AO, Rosati S, Pijnappel PW, van Breukelen B, Timmers MH, Mohammed S, Slijper M, Heck AJ,  (2010) &quot;Perturbation of the yeast N-acetyltransferase NatB induces elevation of protein phosphorylation levels.&quot; <i>BMC Genomics</i> <b>11</b>:685; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21126336 21126336]; doi: [https://dx.doi.org/10.1186/1471-2164-11-685 10.1186/1471-2164-11-685]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21126336 10].
 +
#Fan C, Fu Z, Su Q, Angelini DJ, Van Eyk J, Johns RA,  (2011) &quot;S100A11 mediates hypoxia-induced mitogenic factor (HIMF)-induced smooth muscle cell migration, vesicular exocytosis, and nuclear activation.&quot; <i>Mol Cell Proteomics</i> <b>10</b>(3):M110.000901; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21139050 21139050]; doi: [https://dx.doi.org/10.1074/mcp.M110.000901 10.1074/mcp.M110.000901]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21139050 13].
 +
#Skirycz A, Memmi S, De Bodt S, Maleux K, Obata T, Fernie AR, Devreese B, Inz&eacute; D,  (2011) &quot;A reciprocal 15N-labeling proteomic analysis of expanding Arabidopsis leaves subjected to osmotic stress indicates importance of mitochondria in preserving plastid functions.&quot; <i>J Proteome Res</i> <b>10</b>(3):1018&ndash;29; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21142212 21142212]; doi: [https://dx.doi.org/10.1021/pr100785n 10.1021/pr100785n]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21142212 476].
 +
#Mestdagh P, Bostr&ouml;m AK, Impens F, Fredlund E, Van Peer G, De Antonellis P, von Stedingk K, Ghesqui&egrave;re B, Schulte S, Dews M, Thomas-Tikhonenko A, Schulte JH, Zollo M, Schramm A, Gevaert K, Axelson H, Speleman F, Vandesompele J,  (2010) &quot;The miR-17-92 microRNA cluster regulates multiple components of the TGF-&beta; pathway in neuroblastoma.&quot; <i>Mol Cell</i> <b>40</b>(5):762&ndash;73; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21145484 21145484]; doi: [https://dx.doi.org/10.1016/j.molcel.2010.11.038 10.1016/j.molcel.2010.11.038]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21145484 1].
 +
#Li QR, Xing XB, Chen TT, Li RX, Dai J, Sheng QH, Xin SM, Zhu LL, Jin Y, Pei G, Kang JH, Li YX, Zeng R,  (2011) &quot;Large scale phosphoproteome profiles comprehensive features of mouse embryonic stem cells.&quot; <i>Mol Cell Proteomics</i> <b>10</b>(4):M110.001750; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21149613 21149613]; doi: [https://dx.doi.org/10.1074/mcp.M110.001750 10.1074/mcp.M110.001750]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21149613 12].
 +
#Ito J, Batth TS, Petzold CJ, Redding-Johanson AM, Mukhopadhyay A, Verboom R, Meyer EH, Millar AH, Heazlewood JL,  (2011) &quot;Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism.&quot; <i>J Proteome Res</i> <b>10</b>(4):1571&ndash;82; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21166475 21166475]; doi: [https://dx.doi.org/10.1021/pr1009433 10.1021/pr1009433]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21166475 3].
 +
#Lee JE, Sweredoski MJ, Graham RL, Kolawa NJ, Smith GT, Hess S, Deshaies RJ,  (2011) &quot;The steady-state repertoire of human SCF ubiquitin ligase complexes does not require ongoing Nedd8 conjugation.&quot; <i>Mol Cell Proteomics</i> <b>10</b>(5):M110.006460; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21169563 21169563]; doi: [https://dx.doi.org/10.1074/mcp.M110.006460 10.1074/mcp.M110.006460]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21169563 41].
 +
#Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Vill&eacute;n J, Haas W, Sowa ME, Gygi SP,  (2010) &quot;A tissue-specific atlas of mouse protein phosphorylation and expression.&quot; <i>Cell</i> <b>143</b>(7):1174&ndash;89; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21183079 21183079]; doi: [https://dx.doi.org/10.1016/j.cell.2010.12.001 10.1016/j.cell.2010.12.001]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21183079 313].
 +
#Brockmeyer C, Paster W, Pepper D, Tan CP, Trudgian DC, McGowan S, Fu G, Gascoigne NR, Acuto O, Salek M,  (2011) &quot;T cell receptor (TCR)-induced tyrosine phosphorylation dynamics identifies THEMIS as a new TCR signalosome component.&quot; <i>J Biol Chem</i> <b>286</b>(9):7535&ndash;47; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21189249 21189249]; doi: [https://dx.doi.org/10.1074/jbc.M110.201236 10.1074/jbc.M110.201236]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21189249 4].
 +
#Manes NP, Dong L, Zhou W, Du X, Reghu N, Kool AC, Choi D, Bailey CL, Petricoin EF 3rd, Liotta LA, Popov SG,  (2011) &quot;Discovery of mouse spleen signaling responses to anthrax using label-free quantitative phosphoproteomics via mass spectrometry.&quot; <i>Mol Cell Proteomics</i> <b>10</b>(3):M110.000927; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21189417 21189417]; doi: [https://dx.doi.org/10.1074/mcp.M110.000927 10.1074/mcp.M110.000927]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21189417 133].
 +
#Chornoguz O, Grmai L, Sinha P, Artemenko KA, Zubarev RA, Ostrand-Rosenberg S,  (2011) &quot;Proteomic pathway analysis reveals inflammation increases myeloid-derived suppressor cell resistance to apoptosis.&quot; <i>Mol Cell Proteomics</i> <b>10</b>(3):M110.002980; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21191032 21191032]; doi: [https://dx.doi.org/10.1074/mcp.M110.002980 10.1074/mcp.M110.002980]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21191032 6].
 +
#Hansson J, Panchaud A, Favre L, Bosco N, Mansourian R, Benyacoub J, Blum S, Jensen ON, Kussmann M,  (2011) &quot;Time-resolved quantitative proteome analysis of in vivo intestinal development.&quot; <i>Mol Cell Proteomics</i> <b>10</b>(3):M110.005231; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21191033 21191033]; doi: [https://dx.doi.org/10.1074/mcp.M110.005231 10.1074/mcp.M110.005231]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21191033 48].
 +
#Singh SK, Lakshmi MG, Saxena S, Swamy CV, Idris MM,  (2011) &quot;Proteome profile of zebrafish caudal fin based on one-dimensional gel electrophoresis LCMS/MS and two-dimensional gel electrophoresis MALDI MS/MS analysis.&quot; <i>J Sep Sci</i> <b>34</b>(2):225&ndash;32; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21246729 21246729]; doi: [https://dx.doi.org/10.1002/jssc.201000626 10.1002/jssc.201000626]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21246729 17].
 +
#Bantscheff M, Hopf C, Savitski MM, Dittmann A, Grandi P, Michon AM, Schlegl J, Abraham Y, Becher I, Bergamini G, Boesche M, Delling M, D&uuml;mpelfeld B, Eberhard D, Huthmacher C, Mathieson T, Poeckel D, Reader V, Strunk K, Sweetman G, Kruse U, Neubauer G, Ramsden NG, Drewes G,  (2011) &quot;Chemoproteomics profiling of HDAC inhibitors reveals selective targeting of HDAC complexes.&quot; <i>Nat Biotechnol</i> <b>29</b>(3):255&ndash;65; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21258344 21258344]; doi: [https://dx.doi.org/10.1038/nbt.1759 10.1038/nbt.1759]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21258344 128].
 +
#Baerenfaller K, Hirsch-Hoffmann M, Svozil J, Hull R, Russenberger D, Bischof S, Lu Q, Gruissem W, Baginsky S,  (2011) &quot;pep2pro: a new tool for comprehensive proteome data analysis to reveal information about organ-specific proteomes in Arabidopsis thaliana.&quot; <i>Integr Biol (Camb)</i> <b>3</b>(3):225&ndash;37; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21264403 21264403]; doi: [https://dx.doi.org/10.1039/c0ib00078g 10.1039/c0ib00078g]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21264403 64].
 +
#Otto A, Bernhardt J, Meyer H, Schaffer M, Herbst FA, Siebourg J, M&auml;der U, Lalk M, Hecker M, Becher D,  (2010) &quot;Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis.&quot; <i>Nat Commun</i> <b>1</b>:137; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21266987 21266987]; doi: [https://dx.doi.org/10.1038/ncomms1137 10.1038/ncomms1137]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21266987 76].
 +
#Burkard TR, Planyavsky M, Kaupe I, Breitwieser FP, B&uuml;rckst&uuml;mmer T, Bennett KL, Superti-Furga G, Colinge J,  (2011) &quot;Initial characterization of the human central proteome.&quot; <i>BMC Syst Biol</i> <b>5</b>:17; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21269460 21269460]; doi: [https://dx.doi.org/10.1186/1752-0509-5-17 10.1186/1752-0509-5-17]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21269460 99].
 +
#Smith CR, Smith CD, Robertson HM, Helmkampf M, Zimin A, Yandell M, Holt C, Hu H, Abouheif E, Benton R, Cash E, Croset V, Currie CR, Elhaik E, Elsik CG, Fav&eacute; MJ, Fernandes V, Gibson JD, Graur D, Gronenberg W, Grubbs KJ, Hagen DE, Viniegra AS, Johnson BR, Johnson RM, Khila A, Kim JW, Mathis KA, Munoz-Torres MC, Murphy MC, Mustard JA, Nakamura R, Niehuis O, Nigam S, Overson RP, Placek JE, Rajakumar R, Reese JT, Suen G, Tao S, Torres CW, Tsutsui ND, Viljakainen L, Wolschin F, Gadau J,  (2011) &quot;Draft genome of the red harvester ant Pogonomyrmex barbatus.&quot; <i>Proc Natl Acad Sci U S A</i> <b>108</b>(14):5667&ndash;72; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21282651 21282651]; doi: [https://dx.doi.org/10.1073/pnas.1007901108 10.1073/pnas.1007901108]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21282651 2].
 +
#Michalski A, Cox J, Mann M,  (2011) &quot;More than 100,000 detectable peptide species elute in single shotgun proteomics runs but the majority is inaccessible to data-dependent LC-MS/MS.&quot; <i>J Proteome Res</i> <b>10</b>(4):1785&ndash;93; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21309581 21309581]; doi: [https://dx.doi.org/10.1021/pr101060v 10.1021/pr101060v]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21309581 3].
 +
#Lahtvee PJ, Adamberg K, Arike L, Nahku R, Aller K, Vilu R,  (2011) &quot;Multi-omics approach to study the growth efficiency and amino acid metabolism in Lactococcus lactis at various specific growth rates.&quot; <i>Microb Cell Fact</i> <b>10</b>:12; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21349178 21349178]; doi: [https://dx.doi.org/10.1186/1475-2859-10-12 10.1186/1475-2859-10-12]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21349178 64].
 +
#Paul D, Kumar R, Nanduri B, French T, Pendarvis K, Brown A, Lawrence ML, Burgess SC,  (2011) &quot;Proteome and membrane fatty acid analyses on Oligotropha carboxidovorans OM5 grown under chemolithoautotrophic and heterotrophic conditions.&quot; <i>PLoS One</i> <b>6</b>(2):e17111; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21386900 21386900]; doi: [https://dx.doi.org/10.1371/journal.pone.0017111 10.1371/journal.pone.0017111]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21386900 1].
 +
#Li J, Su Z, Ma ZQ, Slebos RJ, Halvey P, Tabb DL, Liebler DC, Pao W, Zhang B,  (2011) &quot;A bioinformatics workflow for variant peptide detection in shotgun proteomics.&quot; <i>Mol Cell Proteomics</i> <b>10</b>(5):M110.006536; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21389108 21389108]; doi: [https://dx.doi.org/10.1074/mcp.M110.006536 10.1074/mcp.M110.006536]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21389108 59].
 +
#Frese CK, Altelaar AF, Hennrich ML, Nolting D, Zeller M, Griep-Raming J, Heck AJ, Mohammed S,  (2011) &quot;Improved peptide identification by targeted fragmentation using CID, HCD and ETD on an LTQ-Orbitrap Velos.&quot; <i>J Proteome Res</i> <b>10</b>(5):2377&ndash;88; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21413819 21413819]; doi: [https://dx.doi.org/10.1021/pr1011729 10.1021/pr1011729]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21413819 73].
 +
#Poliakov A, Russell CW, Ponnala L, Hoops HJ, Sun Q, Douglas AE, van Wijk KJ,  (2011) &quot;Large-scale label-free quantitative proteomics of the pea aphid-Buchnera symbiosis.&quot; <i>Mol Cell Proteomics</i> <b>10</b>(6):M110.007039; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21421797 21421797]; doi: [https://dx.doi.org/10.1074/mcp.M110.007039 10.1074/mcp.M110.007039]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21421797 148].
 +
#Di Palma S, Boersema PJ, Heck AJ, Mohammed S,  (2011) &quot;Zwitterionic hydrophilic interaction liquid chromatography (ZIC-HILIC and ZIC-cHILIC) provide high resolution separation and increase sensitivity in proteome analysis.&quot; <i>Anal Chem</i> <b>83</b>(9):3440&ndash;7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21443167 21443167]; doi: [https://dx.doi.org/10.1021/ac103312e 10.1021/ac103312e]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21443167 4].
 +
#Jagannadham MV, Abou-Eladab EF, Kulkarni HM,  (2011) &quot;Identification of outer membrane proteins from an Antarctic bacterium Pseudomonas syringae Lz4W.&quot; <i>Mol Cell Proteomics</i> <b>10</b>(6):M110.004549; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21447709 21447709]; doi: [https://dx.doi.org/10.1074/mcp.M110.004549 10.1074/mcp.M110.004549]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21447709 14].
 +
#Chik JK, Schriemer DC, Childs SJ, McGhee JD,  (2011) &quot;Proteome of the Caenorhabditis elegans oocyte.&quot; <i>J Proteome Res</i> <b>10</b>(5):2300&ndash;5; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21452892 21452892]; doi: [https://dx.doi.org/10.1021/pr101124f 10.1021/pr101124f]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21452892 125].
 +
#Brosch M, Saunders GI, Frankish A, Collins MO, Yu L, Wright J, Verstraten R, Adams DJ, Harrow J, Choudhary JS, Hubbard T,  (2011) &quot;Shotgun proteomics aids discovery of novel protein-coding genes, alternative splicing, and &quot;resurrected&quot; pseudogenes in the mouse genome.&quot; <i>Genome Res</i> <b>21</b>(5):756&ndash;67; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21460061 21460061]; doi: [https://dx.doi.org/10.1101/gr.114272.110 10.1101/gr.114272.110]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21460061 3].
 +
#Elschenbroich S, Ignatchenko V, Clarke B, Kalloger SE, Boutros PC, Gramolini AO, Shaw P, Jurisica I, Kislinger T,  (2011) &quot;In-depth proteomics of ovarian cancer ascites: combining shotgun proteomics and selected reaction monitoring mass spectrometry.&quot; <i>J Proteome Res</i> <b>10</b>(5):2286&ndash;99; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21491939 21491939]; doi: [https://dx.doi.org/10.1021/pr1011087 10.1021/pr1011087]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21491939 210].
 +
#Sixt BS, Heinz C, Pichler P, Heinz E, Montanaro J, Op den Camp HJ, Ammerer G, Mechtler K, Wagner M, Horn M,  (2011) &quot;Proteomic analysis reveals a virtually complete set of proteins for translation and energy generation in elementary bodies of the amoeba symbiont Protochlamydia amoebophila.&quot; <i>Proteomics</i> <b>11</b>(10):1868&ndash;92; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21500343 21500343]; doi: [https://dx.doi.org/10.1002/pmic.201000510 10.1002/pmic.201000510]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21500343 232].
 +
#Farid SG, Craven RA, Peng J, Bonney GK, Perkins DN, Selby PJ, Rajendra Prasad K, Banks RE,  (2011) &quot;Shotgun proteomics of human bile in hilar cholangiocarcinoma.&quot; <i>Proteomics</i> <b>11</b>(10):2134&ndash;8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21500345 21500345]; doi: [https://dx.doi.org/10.1002/pmic.201000653 10.1002/pmic.201000653]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21500345 1].
 +
#Vaudel M, Burkhart JM, Sickmann A, Martens L, Zahedi RP,  (2011) &quot;Peptide identification quality control.&quot; <i>Proteomics</i> <b>11</b>(10):2105&ndash;14; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21500347 21500347]; doi: [https://dx.doi.org/10.1002/pmic.201000704 10.1002/pmic.201000704]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21500347 8].
 +
#Marimuthu A, O&#39;Meally RN, Chaerkady R, Subbannayya Y, Nanjappa V, Kumar P, Kelkar DS, Pinto SM, Sharma R, Renuse S, Goel R, Christopher R, Delanghe B, Cole RN, Harsha HC, Pandey A,  (2011) &quot;A comprehensive map of the human urinary proteome.&quot; <i>J Proteome Res</i> <b>10</b>(6):2734&ndash;43; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21500864 21500864]; doi: [https://dx.doi.org/10.1021/pr2003038 10.1021/pr2003038]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21500864 28].
 +
#Ma ZQ, Chambers MC, Ham AJ, Cheek KL, Whitwell CW, Aerni HR, Schilling B, Miller AW, Caprioli RM, Tabb DL,  (2011) &quot;ScanRanker: Quality assessment of tandem mass spectra via sequence tagging.&quot; <i>J Proteome Res</i> <b>10</b>(7):2896&ndash;904; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21520941 21520941]; doi: [https://dx.doi.org/10.1021/pr200118r 10.1021/pr200118r]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21520941 9].
 +
#Adamidi C, Wang Y, Gruen D, Mastrobuoni G, You X, Tolle D, Dodt M, Mackowiak SD, Gogol-Doering A, Oenal P, Rybak A, Ross E, S&aacute;nchez Alvarado A, Kempa S, Dieterich C, Rajewsky N, Chen W,  (2011) &quot;De novo assembly and validation of planaria transcriptome by massive parallel sequencing and shotgun proteomics.&quot; <i>Genome Res</i> <b>21</b>(7):1193&ndash;200; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21536722 21536722]; doi: [https://dx.doi.org/10.1101/gr.113779.110 10.1101/gr.113779.110]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21536722 19].
 +
#Wu R, Dephoure N, Haas W, Huttlin EL, Zhai B, Sowa ME, Gygi SP,  (2011) &quot;Correct interpretation of comprehensive phosphorylation dynamics requires normalization by protein expression changes.&quot; <i>Mol Cell Proteomics</i> <b>10</b>(8):M111.009654; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21551504 21551504]; doi: [https://dx.doi.org/10.1074/mcp.M111.009654 10.1074/mcp.M111.009654]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21551504 15].
 +
#de Poot SA, Westgeest M, Hostetter DR, Van Damme P, Plasman K, Demeyer K, Broekhuizen R, Gevaert K, Craik CS, Bovenschen N,  (2011) &quot;Human and mouse granzyme M display divergent and species-specific substrate specificities.&quot; <i>Biochem J</i> <b>437</b>(3):431&ndash;42; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21564021 21564021]; doi: [https://dx.doi.org/10.1042/BJ20110210 10.1042/BJ20110210]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21564021 1].
 +
#Overton IM, Graham S, Gould KA, Hinds J, Botting CH, Shirran S, Barton GJ, Coote PJ,  (2011) &quot;Global network analysis of drug tolerance, mode of action and virulence in methicillin-resistant S. aureus.&quot; <i>BMC Syst Biol</i> <b>5</b>:68; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21569391 21569391]; doi: [https://dx.doi.org/10.1186/1752-0509-5-68 10.1186/1752-0509-5-68]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21569391 10].
 +
#Thakur SS, Geiger T, Chatterjee B, Bandilla P, Fr&ouml;hlich F, Cox J, Mann M,  (2011) &quot;Deep and highly sensitive proteome coverage by LC-MS/MS without prefractionation.&quot; <i>Mol Cell Proteomics</i> <b>10</b>(8):M110.003699; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21586754 21586754]; doi: [https://dx.doi.org/10.1074/mcp.M110.003699 10.1074/mcp.M110.003699]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21586754 21].
 +
#Didangelos A, Yin X, Mandal K, Saje A, Smith A, Xu Q, Jahangiri M, Mayr M,  (2011) &quot;Extracellular matrix composition and remodeling in human abdominal aortic aneurysms: a proteomics approach.&quot; <i>Mol Cell Proteomics</i> <b>10</b>(8):M111.008128; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21593211 21593211]; doi: [https://dx.doi.org/10.1074/mcp.M111.008128 10.1074/mcp.M111.008128]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21593211 168].
 +
#Schwanh&auml;usser B, Busse D, Li N, Dittmar G, Schuchhardt J, Wolf J, Chen W, Selbach M,  (2011) &quot;Global quantification of mammalian gene expression control.&quot; <i>Nature</i> <b>473</b>(7347):337&ndash;42; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21593866 21593866]; doi: [https://dx.doi.org/10.1038/nature10098 10.1038/nature10098]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21593866 61].
 +
#Kim MS, Zhong J, Kandasamy K, Delanghe B, Pandey A,  (2011) &quot;Systematic evaluation of alternating CID and ETD fragmentation for phosphorylated peptides.&quot; <i>Proteomics</i> <b>11</b>(12):2568&ndash;72; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21598390 21598390]; doi: [https://dx.doi.org/10.1002/pmic.201000547 10.1002/pmic.201000547]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21598390 28].
 +
#M&uuml;hlhaus T, Weiss J, Hemme D, Sommer F, Schroda M,  (2011) &quot;Quantitative shotgun proteomics using a uniform &sup1;&#x2075;N-labeled standard to monitor proteome dynamics in time course experiments reveals new insights into the heat stress response of Chlamydomonas reinhardtii.&quot; <i>Mol Cell Proteomics</i> <b>10</b>(9):M110.004739; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21610104 21610104]; doi: [https://dx.doi.org/10.1074/mcp.M110.004739 10.1074/mcp.M110.004739]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21610104 2].
 +
#Shao H, Chaerkady R, Chen S, Pinto SM, Sharma R, Delanghe B, Birk DE, Pandey A, Chakravarti S,  (2011) &quot;Proteome profiling of wild type and lumican-deficient mouse corneas.&quot; <i>J Proteomics</i> <b>74</b>(10):1895&ndash;905; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21616181 21616181]; doi: [https://dx.doi.org/10.1016/j.jprot.2011.04.032 10.1016/j.jprot.2011.04.032]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21616181 96].
 +
#Helsens K, Van Damme P, Degroeve S, Martens L, Arnesen T, Vandekerckhove J, Gevaert K,  (2011) &quot;Bioinformatics analysis of a Saccharomyces cerevisiae N-terminal proteome provides evidence of alternative translation initiation and post-translational N-terminal acetylation.&quot; <i>J Proteome Res</i> <b>10</b>(8):3578&ndash;89; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21619078 21619078]; doi: [https://dx.doi.org/10.1021/pr2002325 10.1021/pr2002325]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21619078 1].
 +
#Dunham WH, Larsen B, Tate S, Badillo BG, Goudreault M, Tehami Y, Kislinger T, Gingras AC,  (2011) &quot;A cost-benefit analysis of multidimensional fractionation of affinity purification-mass spectrometry samples.&quot; <i>Proteomics</i> <b>11</b>(13):2603&ndash;12; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21630450 21630450]; doi: [https://dx.doi.org/10.1002/pmic.201000571 10.1002/pmic.201000571]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21630450 105].
 +
#Choi DS, Park JO, Jang SC, Yoon YJ, Jung JW, Choi DY, Kim JW, Kang JS, Park J, Hwang D, Lee KH, Park SH, Kim YK, Desiderio DM, Kim KP, Gho YS,  (2011) &quot;Proteomic analysis of microvesicles derived from human colorectal cancer ascites.&quot; <i>Proteomics</i> <b>11</b>(13):2745&ndash;51; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21630462 21630462]; doi: [https://dx.doi.org/10.1002/pmic.201100022 10.1002/pmic.201100022]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21630462 3].
 +
#Le Bihan T, Martin SF, Chirnside ES, van Ooijen G, Barrios-Llerena ME, O&#39;Neill JS, Shliaha PV, Kerr LE, Millar AJ,  (2011) &quot;Shotgun proteomic analysis of the unicellular alga Ostreococcus tauri.&quot; <i>J Proteomics</i> <b>74</b>(10):2060&ndash;70; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21635980 21635980]; doi: [https://dx.doi.org/10.1016/j.jprot.2011.05.028 10.1016/j.jprot.2011.05.028]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21635980 236].
 +
#Chan QW, Parker R, Sun Z, Deutsch EW, Foster LJ,  (2011) &quot;A honey bee (Apis mellifera L.) PeptideAtlas crossing castes and tissues.&quot; <i>BMC Genomics</i> <b>12</b>:290; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21639908 21639908]; doi: [https://dx.doi.org/10.1186/1471-2164-12-290 10.1186/1471-2164-12-290]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21639908 1032].
 +
#Olsson N, Wingren C, Mattsson M, James P, O&#39;Connell D, Nilsson F, Cahill DJ, Borrebaeck CA,  (2011) &quot;Proteomic analysis and discovery using affinity proteomics and mass spectrometry.&quot; <i>Mol Cell Proteomics</i> <b>10</b>(10):M110.003962; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21673276 21673276]; doi: [https://dx.doi.org/10.1074/mcp.M110.003962 10.1074/mcp.M110.003962]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21673276 109].
 +
#Addona TA, Shi X, Keshishian H, Mani DR, Burgess M, Gillette MA, Clauser KR, Shen D, Lewis GD, Farrell LA, Fifer MA, Sabatine MS, Gerszten RE, Carr SA,  (2011) &quot;A pipeline that integrates the discovery and verification of plasma protein biomarkers reveals candidate markers for cardiovascular disease.&quot; <i>Nat Biotechnol</i> <b>29</b>(7):635&ndash;43; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21685905 21685905]; doi: [https://dx.doi.org/10.1038/nbt.1899 10.1038/nbt.1899]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21685905 269].
 +
#Gfeller A, Baerenfaller K, Loscos J, Ch&eacute;telat A, Baginsky S, Farmer EE,  (2011) &quot;Jasmonate controls polypeptide patterning in undamaged tissue in wounded Arabidopsis leaves.&quot; <i>Plant Physiol</i> <b>156</b>(4):1797&ndash;807; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21693672 21693672]; doi: [https://dx.doi.org/10.1104/pp.111.181008 10.1104/pp.111.181008]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21693672 8].
 +
#Karn RC, Laukaitis CM,  (2011) &quot;Positive selection shaped the convergent evolution of independently expanded kallikrein subfamilies expressed in mouse and rat saliva proteomes.&quot; <i>PLoS One</i> <b>6</b>(6):e20979; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21695125 21695125]; doi: [https://dx.doi.org/10.1371/journal.pone.0020979 10.1371/journal.pone.0020979]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21695125 102].
 +
#de Oliveira JM, van Passel MW, Schaap PJ, de Graaff LH,  (2011) &quot;Proteomic analysis of the secretory response of Aspergillus niger to D-maltose and D-xylose.&quot; <i>PLoS One</i> <b>6</b>(6):e20865; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21698107 21698107]; doi: [https://dx.doi.org/10.1371/journal.pone.0020865 10.1371/journal.pone.0020865]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21698107 2].
 +
#Kuntumalla S, Zhang Q, Braisted JC, Fleischmann RD, Peterson SN, Donohue-Rolfe A, Tzipori S, Pieper R,  (2011) &quot;In vivo versus in vitro protein abundance analysis of Shigella dysenteriae type 1 reveals changes in the expression of proteins involved in virulence, stress and energy metabolism.&quot; <i>BMC Microbiol</i> <b>11</b>:147; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21702961 21702961]; doi: [https://dx.doi.org/10.1186/1471-2180-11-147 10.1186/1471-2180-11-147]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21702961 19].
 +
#Bisson N, James DA, Ivosev G, Tate SA, Bonner R, Taylor L, Pawson T,  (2011) &quot;Selected reaction monitoring mass spectrometry reveals the dynamics of signaling through the GRB2 adaptor.&quot; <i>Nat Biotechnol</i> <b>29</b>(7):653&ndash;8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21706016 21706016]; doi: [https://dx.doi.org/10.1038/nbt.1905 10.1038/nbt.1905]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21706016 5].
 +
#Kettenbach AN, Schweppe DK, Faherty BK, Pechenick D, Pletnev AA, Gerber SA,  (2011) &quot;Quantitative phosphoproteomics identifies substrates and functional modules of Aurora and Polo-like kinase activities in mitotic cells.&quot; <i>Sci Signal</i> <b>4</b>(179):rs5; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21712546 21712546]; doi: [https://dx.doi.org/10.1126/scisignal.2001497 10.1126/scisignal.2001497]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21712546 100].
 +
#Bradel-Tretheway BG, Mattiacio JL, Krasnoselsky A, Stevenson C, Purdy D, Dewhurst S, Katze MG,  (2011) &quot;Comprehensive proteomic analysis of influenza virus polymerase complex reveals a novel association with mitochondrial proteins and RNA polymerase accessory factors.&quot; <i>J Virol</i> <b>85</b>(17):8569&ndash;81; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21715506 21715506]; doi: [https://dx.doi.org/10.1128/JVI.00496-11 10.1128/JVI.00496-11]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21715506 22].
 +
#Freschi L, Courcelles M, Thibault P, Michnick SW, Landry CR,  (2011) &quot;Phosphorylation network rewiring by gene duplication.&quot; <i>Mol Syst Biol</i> <b>7</b>:504; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21734643 21734643]; doi: [https://dx.doi.org/10.1038/msb.2011.43 10.1038/msb.2011.43]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21734643 2].
 +
#Bright LA, Mujahid N, Nanduri B, McCarthy FM, Costa LR, Burgess SC, Swiderski CE,  (2011) &quot;Functional modelling of an equine bronchoalveolar lavage fluid proteome provides experimental confirmation and functional annotation of equine genome sequences.&quot; <i>Anim Genet</i> <b>42</b>(4):395&ndash;405; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21749422 21749422]; doi: [https://dx.doi.org/10.1111/j.1365-2052.2010.02158.x 10.1111/j.1365-2052.2010.02158.x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21749422 6].
 +
#Chi BK, Gronau K, M&auml;der U, Hessling B, Becher D, Antelmann H,  (2011) &quot;S-bacillithiolation protects against hypochlorite stress in Bacillus subtilis as revealed by transcriptomics and redox proteomics.&quot; <i>Mol Cell Proteomics</i> <b>10</b>(11):M111.009506; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21749987 21749987]; doi: [https://dx.doi.org/10.1074/mcp.M111.009506 10.1074/mcp.M111.009506]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21749987 144].
 +
#Choi DS, Kim DK, Choi SJ, Lee J, Choi JP, Rho S, Park SH, Kim YK, Hwang D, Gho YS,  (2011) &quot;Proteomic analysis of outer membrane vesicles derived from Pseudomonas aeruginosa.&quot; <i>Proteomics</i> <b>11</b>(16):3424&ndash;9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21751344 21751344]; doi: [https://dx.doi.org/10.1002/pmic.201000212 10.1002/pmic.201000212]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21751344 4].
 +
#Vermachova M, Purkrtova Z, Santrucek J, Jolivet P, Chardot T, Kodicek M,  (2011) &quot;New protein isoforms identified within Arabidopsis thaliana seed oil bodies combining chymotrypsin/trypsin digestion and peptide fragmentation analysis.&quot; <i>Proteomics</i> <b>11</b>(16):3430&ndash;4; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21751352 21751352]; doi: [https://dx.doi.org/10.1002/pmic.201000603 10.1002/pmic.201000603]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21751352 19].
 +
#Capriotti AL, Caracciolo G, Caruso G, Foglia P, Pozzi D, Samperi R, Lagan&agrave; A,  (2011) &quot;DNA affects the composition of lipoplex protein corona: a proteomics approach.&quot; <i>Proteomics</i> <b>11</b>(16):3349&ndash;58; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21751361 21751361]; doi: [https://dx.doi.org/10.1002/pmic.201000803 10.1002/pmic.201000803]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21751361 2].
 +
#Raj L, Ide T, Gurkar AU, Foley M, Schenone M, Li X, Tolliday NJ, Golub TR, Carr SA, Shamji AF, Stern AM, Mandinova A, Schreiber SL, Lee SW,  (2011) &quot;Selective killing of cancer cells by a small molecule targeting the stress response to ROS.&quot; <i>Nature</i> <b>475</b>(7355):231&ndash;4; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21753854 21753854]; doi: [https://dx.doi.org/10.1038/nature10167 10.1038/nature10167]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21753854 81].
 +
#Reiland S, Finazzi G, Endler A, Willig A, Baerenfaller K, Grossmann J, Gerrits B, Rutishauser D, Gruissem W, Rochaix JD, Baginsky S,  (2011) &quot;Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).&quot; <i>Proc Natl Acad Sci U S A</i> <b>108</b>(31):12955&ndash;60; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21768351 21768351]; doi: [https://dx.doi.org/10.1073/pnas.1104734108 10.1073/pnas.1104734108]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21768351 8].
 +
#Schmidt A, Beck M, Malmstr&ouml;m J, Lam H, Claassen M, Campbell D, Aebersold R,  (2011) &quot;Absolute quantification of microbial proteomes at different states by directed mass spectrometry.&quot; <i>Mol Syst Biol</i> <b>7</b>:510; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21772258 21772258]; doi: [https://dx.doi.org/10.1038/msb.2011.37 10.1038/msb.2011.37]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21772258 93].
 +
#Maier T, Schmidt A, G&uuml;ell M, K&uuml;hner S, Gavin AC, Aebersold R, Serrano L,  (2011) &quot;Quantification of mRNA and protein and integration with protein turnover in a bacterium.&quot; <i>Mol Syst Biol</i> <b>7</b>:511; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21772259 21772259]; doi: [https://dx.doi.org/10.1038/msb.2011.38 10.1038/msb.2011.38]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21772259 42].
 +
#Sundaresan NR, Pillai VB, Wolfgeher D, Samant S, Vasudevan P, Parekh V, Raghuraman H, Cunningham JM, Gupta M, Gupta MP,  (2011) &quot;The deacetylase SIRT1 promotes membrane localization and activation of Akt and PDK1 during tumorigenesis and cardiac hypertrophy.&quot; <i>Sci Signal</i> <b>4</b>(182):ra46; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21775285 21775285]; doi: [https://dx.doi.org/10.1126/scisignal.2001465 10.1126/scisignal.2001465]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21775285 2].
 +
#Ficarro SB, Zhang Y, Carrasco-Alfonso MJ, Garg B, Adelmant G, Webber JT, Luckey CJ, Marto JA,  (2011) &quot;Online nanoflow multidimensional fractionation for high efficiency phosphopeptide analysis.&quot; <i>Mol Cell Proteomics</i> <b>10</b>(11):O111.011064; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21788404 21788404]; doi: [https://dx.doi.org/10.1074/mcp.O111.011064 10.1074/mcp.O111.011064]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21788404 437].
 +
#Vranakis I, De Bock PJ, Papadioti A, Samoilis G, Tselentis Y, Gevaert K, Tsiotis G, Psaroulaki A,  (2011) &quot;Unraveling persistent host cell infection with Coxiella burnetii by quantitative proteomics.&quot; <i>J Proteome Res</i> <b>10</b>(9):4241&ndash;51; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21790200 21790200]; doi: [https://dx.doi.org/10.1021/pr200422f 10.1021/pr200422f]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21790200 1].
 +
#Weinert BT, Wagner SA, Horn H, Henriksen P, Liu WR, Olsen JV, Jensen LJ, Choudhary C,  (2011) &quot;Proteome-wide mapping of the Drosophila acetylome demonstrates a high degree of conservation of lysine acetylation.&quot; <i>Sci Signal</i> <b>4</b>(183):ra48; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21791702 21791702]; doi: [https://dx.doi.org/10.1126/scisignal.2001902 10.1126/scisignal.2001902]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21791702 46].
 +
#Chaerkady R, Kelkar DS, Muthusamy B, Kandasamy K, Dwivedi SB, Sahasrabuddhe NA, Kim MS, Renuse S, Pinto SM, Sharma R, Pawar H, Sekhar NR, Mohanty AK, Getnet D, Yang Y, Zhong J, Dash AP, MacCallum RM, Delanghe B, Mlambo G, Kumar A, Keshava Prasad TS, Okulate M, Kumar N, Pandey A,  (2011) &quot;A proteogenomic analysis of Anopheles gambiae using high-resolution Fourier transform mass spectrometry.&quot; <i>Genome Res</i> <b>21</b>(11):1872&ndash;81; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21795387 21795387]; doi: [https://dx.doi.org/10.1101/gr.127951.111 10.1101/gr.127951.111]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21795387 341].
 +
#Staes A, Impens F, Van Damme P, Ruttens B, Goethals M, Demol H, Timmerman E, Vandekerckhove J, Gevaert K,  (2011) &quot;Selecting protein N-terminal peptides by combined fractional diagonal chromatography.&quot; <i>Nat Protoc</i> <b>6</b>(8):1130&ndash;41; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21799483 21799483]; doi: [https://dx.doi.org/10.1038/nprot.2011.355 10.1038/nprot.2011.355]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21799483 1].
 +
#Hennrich ML, Groenewold V, Kops GJ, Heck AJ, Mohammed S,  (2011) &quot;Improving depth in phosphoproteomics by using a strong cation exchange-weak anion exchange-reversed phase multidimensional separation approach.&quot; <i>Anal Chem</i> <b>83</b>(18):7137&ndash;43; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21815630 21815630]; doi: [https://dx.doi.org/10.1021/ac2015068 10.1021/ac2015068]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21815630 119].
 +
#Pagliuca FW, Collins MO, Lichawska A, Zegerman P, Choudhary JS, Pines J,  (2011) &quot;Quantitative proteomics reveals the basis for the biochemical specificity of the cell-cycle machinery.&quot; <i>Mol Cell</i> <b>43</b>(3):406&ndash;17; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21816347 21816347]; doi: [https://dx.doi.org/10.1016/j.molcel.2011.05.031 10.1016/j.molcel.2011.05.031]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21816347 3].
 +
#Fisunov GY, Alexeev DG, Bazaleev NA, Ladygina VG, Galyamina MA, Kondratov IG, Zhukova NA, Serebryakova MV, Demina IA, Govorun VM,  (2011) &quot;Core proteome of the minimal cell: comparative proteomics of three mollicute species.&quot; <i>PLoS One</i> <b>6</b>(7):e21964; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21818284 21818284]; doi: [https://dx.doi.org/10.1371/journal.pone.0021964 10.1371/journal.pone.0021964]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21818284 1].
 +
#Schilling O, auf dem Keller U, Overall CM,  (2011) &quot;Factor Xa subsite mapping by proteome-derived peptide libraries improved using WebPICS, a resource for proteomic identification of cleavage sites.&quot; <i>Biol Chem</i> <b>392</b>(11):1031&ndash;7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21846260 21846260]; doi: [https://dx.doi.org/10.1515/BC.2011.158 10.1515/BC.2011.158]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21846260 2].
 +
#Blasius M, Forment JV, Thakkar N, Wagner SA, Choudhary C, Jackson SP,  (2011) &quot;A phospho-proteomic screen identifies substrates of the checkpoint kinase Chk1.&quot; <i>Genome Biol</i> <b>12</b>(8):R78; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21851590 21851590]; doi: [https://dx.doi.org/10.1186/gb-2011-12-8-r78 10.1186/gb-2011-12-8-r78]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21851590 2].
 +
#Grosstessner-Hain K, Hegemann B, Novatchkova M, Rameseder J, Joughin BA, Hudecz O, Roitinger E, Pichler P, Kraut N, Yaffe MB, Peters JM, Mechtler K,  (2011) &quot;Quantitative phospho-proteomics to investigate the polo-like kinase 1-dependent phospho-proteome.&quot; <i>Mol Cell Proteomics</i> <b>10</b>(11):M111.008540; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21857030 21857030]; doi: [https://dx.doi.org/10.1074/mcp.M111.008540 10.1074/mcp.M111.008540]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21857030 27].
 +
#Galli M, Mu&ntilde;oz J, Portegijs V, Boxem M, Grill SW, Heck AJ, van den Heuvel S,  (2011) &quot;aPKC phosphorylates NuMA-related LIN-5 to position the mitotic spindle during asymmetric division.&quot; <i>Nat Cell Biol</i> <b>13</b>(9):1132&ndash;8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21857670 21857670]; doi: [https://dx.doi.org/10.1038/ncb2315 10.1038/ncb2315]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21857670 57].
 +
#James R, Searcy JL, Le Bihan T, Martin SF, Gliddon CM, Povey J, Deighton RF, Kerr LE, McCulloch J, Horsburgh K,  (2012) &quot;Proteomic analysis of mitochondria in APOE transgenic mice and in response to an ischemic challenge.&quot; <i>J Cereb Blood Flow Metab</i> <b>32</b>(1):164&ndash;76; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21878944 21878944]; doi: [https://dx.doi.org/10.1038/jcbfm.2011.120 10.1038/jcbfm.2011.120]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21878944 29].
 +
#Peng L, Kapp EA, McLauchlan D, Jordan TW,  (2011) &quot;Characterization of the Asia Oceania Human Proteome Organisation Membrane Proteomics Initiative Standard using SDS-PAGE shotgun proteomics.&quot; <i>Proteomics</i> <b>11</b>(22):4376&ndash;84; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21887821 21887821]; doi: [https://dx.doi.org/10.1002/pmic.201100169 10.1002/pmic.201100169]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21887821 6].
 +
#Fischer JJ, Michaelis S, Schrey AK, Diehl A, Graebner OY, Ungewiss J, Horzowski S, Glinski M, Kroll F, Dreger M, Koester H,  (2011) &quot;SAHA Capture Compound--a novel tool for the profiling of histone deacetylases and the identification of additional vorinostat binders.&quot; <i>Proteomics</i> <b>11</b>(20):4096&ndash;104; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21898820 21898820]; doi: [https://dx.doi.org/10.1002/pmic.201000717 10.1002/pmic.201000717]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21898820 18].
 +
#&Oslash;stergaard L, Honor&eacute; B, Thorsen LB, Baandrup J, Eskildsen-Helmond Y, Laursen BE, Vorum H, Mulvany MJ, Simonsen U,  (2011) &quot;Pulmonary pressure reduction attenuates expression of proteins identified by lung proteomic profiling in pulmonary hypertensive rats.&quot; <i>Proteomics</i> <b>11</b>(23):4492&ndash;502; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21905223 21905223]; doi: [https://dx.doi.org/10.1002/pmic.201100171 10.1002/pmic.201100171]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21905223 1].
 +
#Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP,  (2011) &quot;Systematic and quantitative assessment of the ubiquitin-modified proteome.&quot; <i>Mol Cell</i> <b>44</b>(2):325&ndash;40; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21906983 21906983]; doi: [https://dx.doi.org/10.1016/j.molcel.2011.08.025 10.1016/j.molcel.2011.08.025]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21906983 90].
 +
#Nguyen HM, Baudet M, Cuin&eacute; S, Adriano JM, Barthe D, Billon E, Bruley C, Beisson F, Peltier G, Ferro M, Li-Beisson Y,  (2011) &quot;Proteomic profiling of oil bodies isolated from the unicellular green microalga Chlamydomonas reinhardtii: with focus on proteins involved in lipid metabolism.&quot; <i>Proteomics</i> <b>11</b>(21):4266&ndash;73; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21928291 21928291]; doi: [https://dx.doi.org/10.1002/pmic.201100114 10.1002/pmic.201100114]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21928291 1].
 +
#Rogers LD, Brown NF, Fang Y, Pelech S, Foster LJ,  (2011) &quot;Phosphoproteomic analysis of Salmonella-infected cells identifies key kinase regulators and SopB-dependent host phosphorylation events.&quot; <i>Sci Signal</i> <b>4</b>(191):rs9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21934108 21934108]; doi: [https://dx.doi.org/10.1126/scisignal.2001668 10.1126/scisignal.2001668]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21934108 9].
 +
#Boisvert FM, Ahmad Y, Gierli&#x144;ski M, Charri&egrave;re F, Lamont D, Scott M, Barton G, Lamond AI,  (2012) &quot;A quantitative spatial proteomics analysis of proteome turnover in human cells.&quot; <i>Mol Cell Proteomics</i> <b>11</b>(3):M111.011429; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21937730 21937730]; doi: [https://dx.doi.org/10.1074/mcp.M111.011429 10.1074/mcp.M111.011429]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21937730 526].
 +
#Nishtala K, Phong TQ, Steil L, Sauter M, Salazar MG, Kandolf R, Kroemer HK, Felix SB, V&ouml;lker U, Klingel K, Hammer E,  (2011) &quot;Virus-induced dilated cardiomyopathy is characterized by increased levels of fibrotic extracellular matrix proteins and reduced amounts of energy-producing enzymes.&quot; <i>Proteomics</i> <b>11</b>(22):4310&ndash;20; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21954127 21954127]; doi: [https://dx.doi.org/10.1002/pmic.201100229 10.1002/pmic.201100229]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21954127 91].
 +
#Zeiler M, Straube WL, Lundberg E, Uhlen M, Mann M,  (2012) &quot;A Protein Epitope Signature Tag (PrEST) library allows SILAC-based absolute quantification and multiplexed determination of protein copy numbers in cell lines.&quot; <i>Mol Cell Proteomics</i> <b>11</b>(3):O111.009613; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21964433 21964433]; doi: [https://dx.doi.org/10.1074/mcp.O111.009613 10.1074/mcp.O111.009613]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21964433 138].
 +
#Kelkar DS, Kumar D, Kumar P, Balakrishnan L, Muthusamy B, Yadav AK, Shrivastava P, Marimuthu A, Anand S, Sundaram H, Kingsbury R, Harsha HC, Nair B, Prasad TS, Chauhan DS, Katoch K, Katoch VM, Kumar P, Chaerkady R, Ramachandran S, Dash D, Pandey A,  (2011) &quot;Proteogenomic analysis of Mycobacterium tuberculosis by high resolution mass spectrometry.&quot; <i>Mol Cell Proteomics</i> <b>10</b>(12):M111.011627; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21969609 21969609]; doi: [https://dx.doi.org/10.1074/mcp.M111.011445 10.1074/mcp.M111.011445]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21969609 52].
 +
#Burgener A, Rahman S, Ahmad R, Lajoie J, Ramdahin S, Mesa C, Brunet S, Wachihi C, Kimani J, Fowke K, Carr S, Plummer F, Ball TB,  (2011) &quot;Comprehensive proteomic study identifies serpin and cystatin antiproteases as novel correlates of HIV-1 resistance in the cervicovaginal mucosa of female sex workers.&quot; <i>J Proteome Res</i> <b>10</b>(11):5139&ndash;49; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21973077 21973077]; doi: [https://dx.doi.org/10.1021/pr200596r 10.1021/pr200596r]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21973077 6].
 +
#Phanstiel DH, Brumbaugh J, Wenger CD, Tian S, Probasco MD, Bailey DJ, Swaney DL, Tervo MA, Bolin JM, Ruotti V, Stewart R, Thomson JA, Coon JJ,  (2011) &quot;Proteomic and phosphoproteomic comparison of human ES and iPS cells.&quot; <i>Nat Methods</i> <b>8</b>(10):821&ndash;7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21983960 21983960]; doi: [https://dx.doi.org/10.1038/nmeth.1699 10.1038/nmeth.1699]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21983960 88].
 +
#Guan JS, Su SC, Gao J, Joseph N, Xie Z, Zhou Y, Durak O, Zhang L, Zhu JJ, Clauser KR, Carr SA, Tsai LH,  (2011) &quot;Cdk5 is required for memory function and hippocampal plasticity via the cAMP signaling pathway.&quot; <i>PLoS One</i> <b>6</b>(9):e25735; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21984943 21984943]; doi: [https://dx.doi.org/10.1371/journal.pone.0025735 10.1371/journal.pone.0025735]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21984943 26].
 +
#Fischer R, Trudgian DC, Wright C, Thomas G, Bradbury LA, Brown MA, Bowness P, Kessler BM,  (2012) &quot;Discovery of candidate serum proteomic and metabolomic biomarkers in ankylosing spondylitis.&quot; <i>Mol Cell Proteomics</i> <b>11</b>(2):M111.013904; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21997733 21997733]; doi: [https://dx.doi.org/10.1074/mcp.M111.013904 10.1074/mcp.M111.013904]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21997733 60].
 +
#Ng DW, Zhang C, Miller M, Shen Z, Briggs SP, Chen ZJ,  (2012) &quot;Proteomic divergence in Arabidopsis autopolyploids and allopolyploids and their progenitors.&quot; <i>Heredity (Edinb)</i> <b>108</b>(4):419&ndash;30; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22009271 22009271]; doi: [https://dx.doi.org/10.1038/hdy.2011.92 10.1038/hdy.2011.92]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22009271 111].
 +
#Capuano F, Bond NJ, Gatto L, Beaudoin F, Napier JA, Benvenuto E, Lilley KS, Baschieri S,  (2011) &quot;LC-MS/MS methods for absolute quantification and identification of proteins associated with chimeric plant oil bodies.&quot; <i>Anal Chem</i> <b>83</b>(24):9267&ndash;72; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22017570 22017570]; doi: [https://dx.doi.org/10.1021/ac201733m 10.1021/ac201733m]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22017570 3].
 +
#Nagaraj N, Kulak NA, Cox J, Neuhauser N, Mayr K, Hoerning O, Vorm O, Mann M,  (2012) &quot;System-wide perturbation analysis with nearly complete coverage of the yeast proteome by single-shot ultra HPLC runs on a bench top Orbitrap.&quot; <i>Mol Cell Proteomics</i> <b>11</b>(3):M111.013722; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22021278 22021278]; doi: [https://dx.doi.org/10.1074/mcp.M111.013722 10.1074/mcp.M111.013722]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22021278 13].
 +
#Bedon F, Villar E, Vincent D, Dupuy JW, Lomenech AM, Mabialangoma A, Chaumeil P, Barr&eacute; A, Plomion C, Gion JM,  (2012) &quot;Proteomic plasticity of two Eucalyptus genotypes under contrasted water regimes in the field.&quot; <i>Plant Cell Environ</i> <b>35</b>(4):790&ndash;805; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22026815 22026815]; doi: [https://dx.doi.org/10.1111/j.1365-3040.2011.02452.x 10.1111/j.1365-3040.2011.02452.x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22026815 145].
 +
#Inder KL, Zheng YZ, Davis MJ, Moon H, Loo D, Nguyen H, Clements JA, Parton RG, Foster LJ, Hill MM,  (2012) &quot;Expression of PTRF in PC-3 Cells modulates cholesterol dynamics and the actin cytoskeleton impacting secretion pathways.&quot; <i>Mol Cell Proteomics</i> <b>11</b>(2):M111.012245; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22030351 22030351]; doi: [https://dx.doi.org/10.1074/mcp.M111.012245 10.1074/mcp.M111.012245]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22030351 16].
 +
#Dunne JC, Li D, Kelly WJ, Leahy SC, Bond JJ, Attwood GT, Jordan TW,  (2012) &quot;Extracellular polysaccharide-degrading proteome of Butyrivibrio proteoclasticus.&quot; <i>J Proteome Res</i> <b>11</b>(1):131&ndash;42; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22060546 22060546]; doi: [https://dx.doi.org/10.1021/pr200864j 10.1021/pr200864j]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22060546 2].
 +
#Winck FV, Ria&ntilde;o-Pach&oacute;n DM, Sommer F, Rupprecht J, Mueller-Roeber B,  (2012) &quot;The nuclear proteome of the green alga Chlamydomonas reinhardtii.&quot; <i>Proteomics</i> <b>12</b>(1):95&ndash;100; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22065562 22065562]; doi: [https://dx.doi.org/10.1002/pmic.201000782 10.1002/pmic.201000782]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22065562 1].
 +
#Hegemann B, Hutchins JR, Hudecz O, Novatchkova M, Rameseder J, Sykora MM, Liu S, Mazanek M, L&eacute;n&aacute;rt P, H&eacute;rich&eacute; JK, Poser I, Kraut N, Hyman AA, Yaffe MB, Mechtler K, Peters JM,  (2011) &quot;Systematic phosphorylation analysis of human mitotic protein complexes.&quot; <i>Sci Signal</i> <b>4</b>(198):rs12; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22067460 22067460]; doi: [https://dx.doi.org/10.1126/scisignal.2001993 10.1126/scisignal.2001993]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22067460 213].
 +
#Glatter T, Schittenhelm RB, Rinner O, Roguska K, Wepf A, J&uuml;nger MA, K&ouml;hler K, Jevtov I, Choi H, Schmidt A, Nesvizhskii AI, Stocker H, Hafen E, Aebersold R, Gstaiger M,  (2011) &quot;Modularity and hormone sensitivity of the Drosophila melanogaster insulin receptor/target of rapamycin interaction proteome.&quot; <i>Mol Syst Biol</i> <b>7</b>:547; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22068330 22068330]; doi: [https://dx.doi.org/10.1038/msb.2011.79 10.1038/msb.2011.79]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22068330 138].
 +
#Nagaraj N, Wisniewski JR, Geiger T, Cox J, Kircher M, Kelso J, P&auml;&auml;bo S, Mann M,  (2011) &quot;Deep proteome and transcriptome mapping of a human cancer cell line.&quot; <i>Mol Syst Biol</i> <b>7</b>:548; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22068331 22068331]; doi: [https://dx.doi.org/10.1038/msb.2011.81 10.1038/msb.2011.81]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22068331 164].
 +
#Beck M, Schmidt A, Malmstroem J, Claassen M, Ori A, Szymborska A, Herzog F, Rinner O, Ellenberg J, Aebersold R,  (2011) &quot;The quantitative proteome of a human cell line.&quot; <i>Mol Syst Biol</i> <b>7</b>:549; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22068332 22068332]; doi: [https://dx.doi.org/10.1038/msb.2011.82 10.1038/msb.2011.82]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22068332 60].
 +
#Okamoto A, Yamada K,  (2011) &quot;Proteome driven re-evaluation and functional annotation of the Streptococcus pyogenes SF370 genome.&quot; <i>BMC Microbiol</i> <b>11</b>:249; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22070424 22070424]; doi: [https://dx.doi.org/10.1186/1471-2180-11-249 10.1186/1471-2180-11-249]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22070424 2].
 +
#Chevrier N, Mertins P, Artyomov MN, Shalek AK, Iannacone M, Ciaccio MF, Gat-Viks I, Tonti E, DeGrace MM, Clauser KR, Garber M, Eisenhaure TM, Yosef N, Robinson J, Sutton A, Andersen MS, Root DE, von Andrian U, Jones RB, Park H, Carr SA, Regev A, Amit I, Hacohen N,  (2011) &quot;Systematic discovery of TLR signaling components delineates viral-sensing circuits.&quot; <i>Cell</i> <b>147</b>(4):853&ndash;67; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22078882 22078882]; doi: [https://dx.doi.org/10.1016/j.cell.2011.10.022 10.1016/j.cell.2011.10.022]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22078882 48].
 +
#Cappellini E, Jensen LJ, Szklarczyk D, Ginolhac A, da Fonseca RA, Stafford TW, Holen SR, Collins MJ, Orlando L, Willerslev E, Gilbert MT, Olsen JV,  (2012) &quot;Proteomic analysis of a pleistocene mammoth femur reveals more than one hundred ancient bone proteins.&quot; <i>J Proteome Res</i> <b>11</b>(2):917&ndash;26; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22103443 22103443]; doi: [https://dx.doi.org/10.1021/pr200721u 10.1021/pr200721u]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22103443 13].
 +
#Schneider K, Peyraud R, Kiefer P, Christen P, Delmotte N, Massou S, Portais JC, Vorholt JA,  (2012) &quot;The ethylmalonyl-CoA pathway is used in place of the glyoxylate cycle by Methylobacterium extorquens AM1 during growth on acetate.&quot; <i>J Biol Chem</i> <b>287</b>(1):757&ndash;66; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22105076 22105076]; doi: [https://dx.doi.org/10.1074/jbc.M111.305219 10.1074/jbc.M111.305219]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22105076 6].
 +
#Rivera FE, Miller HK, Kolar SL, Stevens SM Jr, Shaw LN,  (2012) &quot;The impact of CodY on virulence determinant production in community-associated methicillin-resistant Staphylococcus aureus.&quot; <i>Proteomics</i> <b>12</b>(2):263&ndash;8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22106056 22106056]; doi: [https://dx.doi.org/10.1002/pmic.201100298 10.1002/pmic.201100298]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22106056 6].
 +
#Munoz J, Low TY, Kok YJ, Chin A, Frese CK, Ding V, Choo A, Heck AJ,  (2011) &quot;The quantitative proteomes of human-induced pluripotent stem cells and embryonic stem cells.&quot; <i>Mol Syst Biol</i> <b>7</b>:550; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22108792 22108792]; doi: [https://dx.doi.org/10.1038/msb.2011.84 10.1038/msb.2011.84]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22108792 220].
 +
#Barbhuiya MA, Sahasrabuddhe NA, Pinto SM, Muthusamy B, Singh TD, Nanjappa V, Keerthikumar S, Delanghe B, Harsha HC, Chaerkady R, Jalaj V, Gupta S, Shrivastav BR, Tiwari PK, Pandey A,  (2011) &quot;Comprehensive proteomic analysis of human bile.&quot; <i>Proteomics</i> <b>11</b>(23):4443&ndash;53; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22114102 22114102]; doi: [https://dx.doi.org/10.1002/pmic.201100197 10.1002/pmic.201100197]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22114102 37].
 +
#Wright B, Stanley RG, Kaiser WJ, Mills DJ, Gibbins JM,  (2011) &quot;Analysis of protein networks in resting and collagen receptor (GPVI)-stimulated platelet sub-proteomes.&quot; <i>Proteomics</i> <b>11</b>(23):4588&ndash;92; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22114104 22114104]; doi: [https://dx.doi.org/10.1002/pmic.201100410 10.1002/pmic.201100410]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22114104 24].
 +
#Malmstr&ouml;m J, Karlsson C, Nordenfelt P, Ossola R, Weisser H, Quandt A, Hansson K, Aebersold R, Malmstr&ouml;m L, Bj&ouml;rck L,  (2012) &quot;Streptococcus pyogenes in human plasma: adaptive mechanisms analyzed by mass spectrometry-based proteomics.&quot; <i>J Biol Chem</i> <b>287</b>(2):1415&ndash;25; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22117078 22117078]; doi: [https://dx.doi.org/10.1074/jbc.M111.267674 10.1074/jbc.M111.267674]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22117078 41].
 +
#Christianson JC, Olzmann JA, Shaler TA, Sowa ME, Bennett EJ, Richter CM, Tyler RE, Greenblatt EJ, Harper JW, Kopito RR,  (2011) &quot;Defining human ERAD networks through an integrative mapping strategy.&quot; <i>Nat Cell Biol</i> <b>14</b>(1):93&ndash;105; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22119785 22119785]; doi: [https://dx.doi.org/10.1038/ncb2383 10.1038/ncb2383]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22119785 94].
 +
#Journet A, Klein G, Brugi&egrave;re S, Vandenbrouck Y, Chapel A, Kieffer S, Bruley C, Masselon C, Aubry L,  (2012) &quot;Investigating the macropinocytic proteome of Dictyostelium amoebae by high-resolution mass spectrometry.&quot; <i>Proteomics</i> <b>12</b>(2):241&ndash;5; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22120990 22120990]; doi: [https://dx.doi.org/10.1002/pmic.201100313 10.1002/pmic.201100313]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22120990 1].
 +
#Murray CI, Uhrigshardt H, O&#39;Meally RN, Cole RN, Van Eyk JE,  (2012) &quot;Identification and quantification of S-nitrosylation by cysteine reactive tandem mass tag switch assay.&quot; <i>Mol Cell Proteomics</i> <b>11</b>(2):M111.013441; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22126794 22126794]; doi: [https://dx.doi.org/10.1074/mcp.M111.013441 10.1074/mcp.M111.013441]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22126794 3].
 +
#Bischof S, Baerenfaller K, Wildhaber T, Troesch R, Vidi PA, Roschitzki B, Hirsch-Hoffmann M, Hennig L, Kessler F, Gruissem W, Baginsky S,  (2011) &quot;Plastid proteome assembly without Toc159: photosynthetic protein import and accumulation of N-acetylated plastid precursor proteins.&quot; <i>Plant Cell</i> <b>23</b>(11):3911&ndash;28; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22128122 22128122]; doi: [https://dx.doi.org/10.1105/tpc.111.092882 10.1105/tpc.111.092882]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22128122 6].
 +
#Prasad TS, Harsha HC, Keerthikumar S, Sekhar NR, Selvan LD, Kumar P, Pinto SM, Muthusamy B, Subbannayya Y, Renuse S, Chaerkady R, Mathur PP, Ravikumar R, Pandey A,  (2012) &quot;Proteogenomic analysis of Candida glabrata using high resolution mass spectrometry.&quot; <i>J Proteome Res</i> <b>11</b>(1):247&ndash;60; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22129275 22129275]; doi: [https://dx.doi.org/10.1021/pr200827k 10.1021/pr200827k]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22129275 70].
 +
#Thomas L, Hodgson DA, Wentzel A, Nieselt K, Ellingsen TE, Moore J, Morrissey ER, Legaie R, STREAM Consortium., Wohlleben W, Rodr&iacute;guez-Garc&iacute;a A, Mart&iacute;n JF, Burroughs NJ, Wellington EM, Smith MC,  (2012) &quot;Metabolic switches and adaptations deduced from the proteomes of Streptomyces coelicolor wild type and phoP mutant grown in batch culture.&quot; <i>Mol Cell Proteomics</i> <b>11</b>(2):M111.013797; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22147733 22147733]; doi: [https://dx.doi.org/10.1074/mcp.M111.013797 10.1074/mcp.M111.013797]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22147733 64].
 +
#Choi DS, Yang JS, Choi EJ, Jang SC, Park S, Kim OY, Hwang D, Kim KP, Kim YK, Kim S, Gho YS,  (2012) &quot;The protein interaction network of extracellular vesicles derived from human colorectal cancer cells.&quot; <i>J Proteome Res</i> <b>11</b>(2):1144&ndash;51; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22149170 22149170]; doi: [https://dx.doi.org/10.1021/pr200842h 10.1021/pr200842h]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22149170 1].
 +
#Naba A, Clauser KR, Hoersch S, Liu H, Carr SA, Hynes RO,  (2012) &quot;The matrisome: in silico definition and in vivo characterization by proteomics of normal and tumor extracellular matrices.&quot; <i>Mol Cell Proteomics</i> <b>11</b>(4):M111.014647; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22159717 22159717]; doi: [https://dx.doi.org/10.1074/mcp.M111.014647 10.1074/mcp.M111.014647]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22159717 98].
 +
#Michalski A, Damoc E, Lange O, Denisov E, Nolting D, M&uuml;ller M, Viner R, Schwartz J, Remes P, Belford M, Dunyach JJ, Cox J, Horning S, Mann M, Makarov A,  (2012) &quot;Ultra high resolution linear ion trap Orbitrap mass spectrometer (Orbitrap Elite) facilitates top down LC MS/MS and versatile peptide fragmentation modes.&quot; <i>Mol Cell Proteomics</i> <b>11</b>(3):O111.013698; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22159718 22159718]; doi: [https://dx.doi.org/10.1074/mcp.O111.013698 10.1074/mcp.O111.013698]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22159718 22].
 +
#Martins-de-Souza D, Guest PC, Guest FL, Bauder C, Rahmoune H, Pietsch S, Roeber S, Kretzschmar H, Mann D, Baborie A, Bahn S,  (2012) &quot;Characterization of the human primary visual cortex and cerebellum proteomes using shotgun mass spectrometry-data-independent analyses.&quot; <i>Proteomics</i> <b>12</b>(3):500&ndash;4; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22162416 22162416]; doi: [https://dx.doi.org/10.1002/pmic.201100476 10.1002/pmic.201100476]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22162416 26].
 +
#Burkhart JM, Schumbrutzki C, Wortelkamp S, Sickmann A, Zahedi RP,  (2012) &quot;Systematic and quantitative comparison of digest efficiency and specificity reveals the impact of trypsin quality on MS-based proteomics.&quot; <i>J Proteomics</i> <b>75</b>(4):1454&ndash;62; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22166745 22166745]; doi: [https://dx.doi.org/10.1016/j.jprot.2011.11.016 10.1016/j.jprot.2011.11.016]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22166745 1].
 +
#Sharma K, Vabulas RM, Macek B, Pinkert S, Cox J, Mann M, Hartl FU,  (2012) &quot;Quantitative proteomics reveals that Hsp90 inhibition preferentially targets kinases and the DNA damage response.&quot; <i>Mol Cell Proteomics</i> <b>11</b>(3):M111.014654; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22167270 22167270]; doi: [https://dx.doi.org/10.1074/mcp.M111.014654 10.1074/mcp.M111.014654]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22167270 41].
 +
#Graumann J, Scheltema RA, Zhang Y, Cox J, Mann M,  (2012) &quot;A framework for intelligent data acquisition and real-time database searching for shotgun proteomics.&quot; <i>Mol Cell Proteomics</i> <b>11</b>(3):M111.013185; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22171319 22171319]; doi: [https://dx.doi.org/10.1074/mcp.M111.013185 10.1074/mcp.M111.013185]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22171319 13].
 +
#Dresang LR, Teuton JR, Feng H, Jacobs JM, Camp DG 2nd, Purvine SO, Gritsenko MA, Li Z, Smith RD, Sugden B, Moore PS, Chang Y,  (2011) &quot;Coupled transcriptome and proteome analysis of human lymphotropic tumor viruses: insights on the detection and discovery of viral genes.&quot; <i>BMC Genomics</i> <b>12</b>:625; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22185355 22185355]; doi: [https://dx.doi.org/10.1186/1471-2164-12-625 10.1186/1471-2164-12-625]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22185355 1].
 +
#Batruch I, Smith CR, Mullen BJ, Grober E, Lo KC, Diamandis EP, Jarvi KA,  (2012) &quot;Analysis of seminal plasma from patients with non-obstructive azoospermia and identification of candidate biomarkers of male infertility.&quot; <i>J Proteome Res</i> <b>11</b>(3):1503&ndash;11; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22188163 22188163]; doi: [https://dx.doi.org/10.1021/pr200812p 10.1021/pr200812p]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22188163 12].
 +
#Altelaar AF, Navarro D, Boekhorst J, van Breukelen B, Snel B, Mohammed S, Heck AJ,  (2012) &quot;Database independent proteomics analysis of the ostrich and human proteome.&quot; <i>Proc Natl Acad Sci U S A</i> <b>109</b>(2):407&ndash;12; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22198768 22198768]; doi: [https://dx.doi.org/10.1073/pnas.1108399108 10.1073/pnas.1108399108]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22198768 21].
 +
#Oppermann FS, Grundner-Culemann K, Kumar C, Gruss OJ, Jallepalli PV, Daub H,  (2012) &quot;Combination of chemical genetics and phosphoproteomics for kinase signaling analysis enables confident identification of cellular downstream targets.&quot; <i>Mol Cell Proteomics</i> <b>11</b>(4):O111.012351; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22199227 22199227]; doi: [https://dx.doi.org/10.1074/mcp.O111.012351 10.1074/mcp.O111.012351]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22199227 96].
 +
#Mertins P, Udeshi ND, Clauser KR, Mani DR, Patel J, Ong SE, Jaffe JD, Carr SA,  (2012) &quot;iTRAQ labeling is superior to mTRAQ for quantitative global proteomics and phosphoproteomics.&quot; <i>Mol Cell Proteomics</i> <b>11</b>(6):M111.014423; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22210691 22210691]; doi: [https://dx.doi.org/10.1074/mcp.M111.014423 10.1074/mcp.M111.014423]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22210691 32].
 +
#Elmore JM, Liu J, Smith B, Phinney B, Coaker G,  (2012) &quot;Quantitative proteomics reveals dynamic changes in the plasma membrane during Arabidopsis immune signaling.&quot; <i>Mol Cell Proteomics</i> <b>11</b>(4):M111.014555; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22215637 22215637]; doi: [https://dx.doi.org/10.1074/mcp.M111.014555 10.1074/mcp.M111.014555]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22215637 90].
 +
#K&ouml;nig S, Nimtz M, Scheiter M, Ljunggren HG, Bryceson YT, J&auml;nsch L,  (2012) &quot;Kinome analysis of receptor-induced phosphorylation in human natural killer cells.&quot; <i>PLoS One</i> <b>7</b>(1):e29672; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22238634 22238634]; doi: [https://dx.doi.org/10.1371/journal.pone.0029672 10.1371/journal.pone.0029672]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22238634 3].
 +
#Al-Hakim AK, Bashkurov M, Gingras AC, Durocher D, Pelletier L,  (2012) &quot;Interaction proteomics identify NEURL4 and the HECT E3 ligase HERC2 as novel modulators of centrosome architecture.&quot; <i>Mol Cell Proteomics</i> <b>11</b>(6):M111.014233; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22261722 22261722]; doi: [https://dx.doi.org/10.1074/mcp.M111.014233 10.1074/mcp.M111.014233]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22261722 18].
 +
#Franklin S, Chen H, Mitchell-Jordan S, Ren S, Wang Y, Vondriska TM,  (2012) &quot;Quantitative analysis of the chromatin proteome in disease reveals remodeling principles and identifies high mobility group protein B2 as a regulator of hypertrophic growth.&quot; <i>Mol Cell Proteomics</i> <b>11</b>(6):M111.014258; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22270000 22270000]; doi: [https://dx.doi.org/10.1074/mcp.M111.014258 10.1074/mcp.M111.014258]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22270000 75].
 +
#Capriotti AL, Caracciolo G, Caruso G, Cavaliere C, Pozzi D, Samperi R, Lagan&agrave; A,  (2013) &quot;Label-free quantitative analysis for studying the interactions between nanoparticles and plasma proteins.&quot; <i>Anal Bioanal Chem</i> <b>405</b>(2-3):635&ndash;45; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22274284 22274284]; doi: [https://dx.doi.org/10.1007/s00216-011-5691-y 10.1007/s00216-011-5691-y]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22274284 45].
 +
#Lundquist PK, Poliakov A, Bhuiyan NH, Zybailov B, Sun Q, van Wijk KJ,  (2012) &quot;The functional network of the Arabidopsis plastoglobule proteome based on quantitative proteomics and genome-wide coexpression analysis.&quot; <i>Plant Physiol</i> <b>158</b>(3):1172&ndash;92; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22274653 22274653]; doi: [https://dx.doi.org/10.1104/pp.111.193144 10.1104/pp.111.193144]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22274653 20].
 +
#Geiger T, Wehner A, Schaab C, Cox J, Mann M,  (2012) &quot;Comparative proteomic analysis of eleven common cell lines reveals ubiquitous but varying expression of most proteins.&quot; <i>Mol Cell Proteomics</i> <b>11</b>(3):M111.014050; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22278370 22278370]; doi: [https://dx.doi.org/10.1074/mcp.M111.014050 10.1074/mcp.M111.014050]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22278370 181].
 +
#Tauro BJ, Greening DW, Mathias RA, Ji H, Mathivanan S, Scott AM, Simpson RJ,  (2012) &quot;Comparison of ultracentrifugation, density gradient separation, and immunoaffinity capture methods for isolating human colon cancer cell line LIM1863-derived exosomes.&quot; <i>Methods</i> <b>56</b>(2):293&ndash;304; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22285593 22285593]; doi: [https://dx.doi.org/10.1016/j.ymeth.2012.01.002 10.1016/j.ymeth.2012.01.002]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22285593 163].
 +
#Schaab C, Geiger T, Stoehr G, Cox J, Mann M,  (2012) &quot;Analysis of high accuracy, quantitative proteomics data in the MaxQB database.&quot; <i>Mol Cell Proteomics</i> <b>11</b>(3):M111.014068; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22301388 22301388]; doi: [https://dx.doi.org/10.1074/mcp.M111.014068 10.1074/mcp.M111.014068]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22301388 361].
 +
#Stokes MP, Farnsworth CL, Moritz A, Silva JC, Jia X, Lee KA, Guo A, Polakiewicz RD, Comb MJ,  (2012) &quot;PTMScan direct: identification and quantification of peptides from critical signaling proteins by immunoaffinity enrichment coupled with LC-MS/MS.&quot; <i>Mol Cell Proteomics</i> <b>11</b>(5):187&ndash;201; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22322096 22322096]; doi: [https://dx.doi.org/10.1074/mcp.M111.015883 10.1074/mcp.M111.015883]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22322096 24].
 +
#Chen ZW, Fuchs K, Sieghart W, Townsend RR, Evers AS,  (2012) &quot;Deep amino acid sequencing of native brain GABAA receptors using high-resolution mass spectrometry.&quot; <i>Mol Cell Proteomics</i> <b>11</b>(1):M111.011445; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22338125 22338125]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22338125 16].
 +
#Bauer C, Kleinjung F, Rutishauser D, Panse C, Chadt A, Dreja T, Al-Hasani H, Reinert K, Schlapbach R, Schuchhardt J,  (2012) &quot;PPINGUIN: Peptide Profiling Guided Identification of Proteins improves quantitation of iTRAQ ratios.&quot; <i>BMC Bioinformatics</i> <b>13</b>:34; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22340093 22340093]; doi: [https://dx.doi.org/10.1186/1471-2105-13-34 10.1186/1471-2105-13-34]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22340093 1].
 +
#Zhong J, Kim MS, Chaerkady R, Wu X, Huang TC, Getnet D, Mitchell CJ, Palapetta SM, Sharma J, O&#39;Meally RN, Cole RN, Yoda A, Moritz A, Loriaux MM, Rush J, Weinstock DM, Tyner JW, Pandey A,  (2012) &quot;TSLP signaling network revealed by SILAC-based phosphoproteomics.&quot; <i>Mol Cell Proteomics</i> <b>11</b>(6):M112.017764; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22345495 22345495]; doi: [https://dx.doi.org/10.1074/mcp.M112.017764 10.1074/mcp.M112.017764]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22345495 25].
 +
#Sandalakis V, Psaroulaki A, De Bock PJ, Christidou A, Gevaert K, Tsiotis G, Tselentis Y,  (2012) &quot;Investigation of rifampicin resistance mechanisms in Brucella abortus using MS-driven comparative proteomics.&quot; <i>J Proteome Res</i> <b>11</b>(4):2374&ndash;85; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22360387 22360387]; doi: [https://dx.doi.org/10.1021/pr201122w 10.1021/pr201122w]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22360387 1].
 +
#Schneider T, Keiblinger KM, Schmid E, Sterflinger-Gleixner K, Ellersdorfer G, Roschitzki B, Richter A, Eberl L, Zechmeister-Boltenstern S, Riedel K,  (2012) &quot;Who is who in litter decomposition? Metaproteomics reveals major microbial players and their biogeochemical functions.&quot; <i>ISME J</i> <b>6</b>(9):1749&ndash;62; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22402400 22402400]; doi: [https://dx.doi.org/10.1038/ismej.2012.11 10.1038/ismej.2012.11]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22402400 1].
 +
#Geiger T, Madden SF, Gallagher WM, Cox J, Mann M,  (2012) &quot;Proteomic portrait of human breast cancer progression identifies novel prognostic markers.&quot; <i>Cancer Res</i> <b>72</b>(9):2428&ndash;39; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22414580 22414580]; doi: [https://dx.doi.org/10.1158/0008-5472.CAN-11-3711 10.1158/0008-5472.CAN-11-3711]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22414580 420].
 +
#Orr SJ, Boutz DR, Wang R, Chronis C, Lea NC, Thayaparan T, Hamilton E, Milewicz H, Blanc E, Mufti GJ, Marcotte EM, Thomas NS,  (2012) &quot;Proteomic and protein interaction network analysis of human T lymphocytes during cell-cycle entry.&quot; <i>Mol Syst Biol</i> <b>8</b>:573; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22415777 22415777]; doi: [https://dx.doi.org/10.1038/msb.2012.5 10.1038/msb.2012.5]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22415777 62].
 +
#Chen R, Mias GI, Li-Pook-Than J, Jiang L, Lam HY, Chen R, Miriami E, Karczewski KJ, Hariharan M, Dewey FE, Cheng Y, Clark MJ, Im H, Habegger L, Balasubramanian S, O&#39;Huallachain M, Dudley JT, Hillenmeyer S, Haraksingh R, Sharon D, Euskirchen G, Lacroute P, Bettinger K, Boyle AP, Kasowski M, Grubert F, Seki S, Garcia M, Whirl-Carrillo M, Gallardo M, Blasco MA, Greenberg PL, Snyder P, Klein TE, Altman RB, Butte AJ, Ashley EA, Gerstein M, Nadeau KC, Tang H, Snyder M,  (2012) &quot;Personal omics profiling reveals dynamic molecular and medical phenotypes.&quot; <i>Cell</i> <b>148</b>(6):1293&ndash;307; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22424236 22424236]; doi: [https://dx.doi.org/10.1016/j.cell.2012.02.009 10.1016/j.cell.2012.02.009]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22424236 165].
 +
#Vranakis I, De Bock PJ, Papadioti A, Tselentis Y, Gevaert K, Tsiotis G, Psaroulaki A,  (2012) &quot;Quantitative proteome profiling of C. burnetii under tetracycline stress conditions.&quot; <i>PLoS One</i> <b>7</b>(3):e33599; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22438959 22438959]; doi: [https://dx.doi.org/10.1371/journal.pone.0033599 10.1371/journal.pone.0033599]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22438959 2].
 +
#Deeb SJ, D&#39;Souza RC, Cox J, Schmidt-Supprian M, Mann M,  (2012) &quot;Super-SILAC allows classification of diffuse large B-cell lymphoma subtypes by their protein expression profiles.&quot; <i>Mol Cell Proteomics</i> <b>11</b>(5):77&ndash;89; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22442255 22442255]; doi: [https://dx.doi.org/10.1074/mcp.M111.015362 10.1074/mcp.M111.015362]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22442255 60].
 +
#Tondeleir D, Lambrechts A, M&uuml;ller M, Jonckheere V, Doll T, Vandamme D, Bakkali K, Waterschoot D, Lemaistre M, Debeir O, Decaestecker C, Hinz B, Staes A, Timmerman E, Colaert N, Gevaert K, Vandekerckhove J, Ampe C,  (2012) &quot;Cells lacking &beta;-actin are genetically reprogrammed and maintain conditional migratory capacity.&quot; <i>Mol Cell Proteomics</i> <b>11</b>(8):255&ndash;71; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22448045 22448045]; doi: [https://dx.doi.org/10.1074/mcp.M111.015099 10.1074/mcp.M111.015099]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22448045 2].
 +
#Schrimpe-Rutledge AC, Jones MB, Chauhan S, Purvine SO, Sanford JA, Monroe ME, Brewer HM, Payne SH, Ansong C, Frank BC, Smith RD, Peterson SN, Motin VL, Adkins JN,  (2012) &quot;Comparative omics-driven genome annotation refinement: application across Yersiniae.&quot; <i>PLoS One</i> <b>7</b>(3):e33903; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22479471 22479471]; doi: [https://dx.doi.org/10.1371/journal.pone.0033903 10.1371/journal.pone.0033903]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22479471 226].
 +
#Wright JC, Collins MO, Yu L, K&auml;ll L, Brosch M, Choudhary JS,  (2012) &quot;Enhanced peptide identification by electron transfer dissociation using an improved Mascot Percolator.&quot; <i>Mol Cell Proteomics</i> <b>11</b>(8):478&ndash;91; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22493177 22493177]; doi: [https://dx.doi.org/10.1074/mcp.O111.014522 10.1074/mcp.O111.014522]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22493177 8].
 +
#Franz-Wachtel M, Eisler SA, Krug K, Wahl S, Carpy A, Nordheim A, Pfizenmaier K, Hausser A, Macek B,  (2012) &quot;Global detection of protein kinase D-dependent phosphorylation events in nocodazole-treated human cells.&quot; <i>Mol Cell Proteomics</i> <b>11</b>(5):160&ndash;70; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22496350 22496350]; doi: [https://dx.doi.org/10.1074/mcp.M111.016014 10.1074/mcp.M111.016014]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22496350 18].
 +
#Ferrando IM, Chaerkady R, Zhong J, Molina H, Jacob HK, Herbst-Robinson K, Dancy BM, Katju V, Bose R, Zhang J, Pandey A, Cole PA,  (2012) &quot;Identification of targets of c-Src tyrosine kinase by chemical complementation and phosphoproteomics.&quot; <i>Mol Cell Proteomics</i> <b>11</b>(8):355&ndash;69; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22499769 22499769]; doi: [https://dx.doi.org/10.1074/mcp.M111.015750 10.1074/mcp.M111.015750]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22499769 7].
 +
#Udeshi ND, Mani DR, Eisenhaure T, Mertins P, Jaffe JD, Clauser KR, Hacohen N, Carr SA,  (2012) &quot;Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition.&quot; <i>Mol Cell Proteomics</i> <b>11</b>(5):148&ndash;59; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22505724 22505724]; doi: [https://dx.doi.org/10.1074/mcp.M111.016857 10.1074/mcp.M111.016857]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22505724 113].
 +
#Yao L, Lao W, Zhang Y, Tang X, Hu X, He C, Hu X, Xu LX,  (2012) &quot;Identification of EFEMP2 as a serum biomarker for the early detection of colorectal cancer with lectin affinity capture assisted secretome analysis of cultured fresh tissues.&quot; <i>J Proteome Res</i> <b>11</b>(6):3281&ndash;94; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22506683 22506683]; doi: [https://dx.doi.org/10.1021/pr300020p 10.1021/pr300020p]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22506683 12].
 +
#Fonslow BR, Niessen SM, Singh M, Wong CC, Xu T, Carvalho PC, Choi J, Park SK, Yates JR 3rd,  (2012) &quot;Single-step inline hydroxyapatite enrichment facilitates identification and quantitation of phosphopeptides from mass-limited proteomes with MudPIT.&quot; <i>J Proteome Res</i> <b>11</b>(5):2697&ndash;709; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22509746 22509746]; doi: [https://dx.doi.org/10.1021/pr300200x 10.1021/pr300200x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22509746 77].
 +
#Urbaniak MD, Guther ML, Ferguson MA,  (2012) &quot;Comparative SILAC proteomic analysis of Trypanosoma brucei bloodstream and procyclic lifecycle stages.&quot; <i>PLoS One</i> <b>7</b>(5):e36619; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22574199 22574199]; doi: [https://dx.doi.org/10.1371/journal.pone.0036619 10.1371/journal.pone.0036619]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22574199 11].
 +
#Ivaldi C, Martin BR, Kieffer-Jaquinod S, Chapel A, Levade T, Garin J, Journet A,  (2012) &quot;Proteomic analysis of S-acylated proteins in human B cells reveals palmitoylation of the immune regulators CD20 and CD23.&quot; <i>PLoS One</i> <b>7</b>(5):e37187; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22615937 22615937]; doi: [https://dx.doi.org/10.1371/journal.pone.0037187 10.1371/journal.pone.0037187]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22615937 2].
 +
#Byron A, Humphries JD, Craig SE, Knight D, Humphries MJ,  (2012) &quot;Proteomic analysis of &alpha;4&beta;1 integrin adhesion complexes reveals &alpha;-subunit-dependent protein recruitment.&quot; <i>Proteomics</i> <b>12</b>(13):2107&ndash;14; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22623428 22623428]; doi: [https://dx.doi.org/10.1002/pmic.201100487 10.1002/pmic.201100487]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22623428 18].
 +
#Pisitkun T, Gandolfo MT, Das S, Knepper MA, Bagnasco SM,  (2012) &quot;Application of systems biology principles to protein biomarker discovery: urinary exosomal proteome in renal transplantation.&quot; <i>Proteomics Clin Appl</i> <b>6</b>(5-6):268&ndash;78; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22641613 22641613]; doi: [https://dx.doi.org/10.1002/prca.201100108 10.1002/prca.201100108]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22641613 7].
 +
#Coffill CR, Muller PA, Oh HK, Neo SP, Hogue KA, Cheok CF, Vousden KH, Lane DP, Blackstock WP, Gunaratne J,  (2012) &quot;Mutant p53 interactome identifies nardilysin as a p53R273H-specific binding partner that promotes invasion.&quot; <i>EMBO Rep</i> <b>13</b>(7):638&ndash;44; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22653443 22653443]; doi: [https://dx.doi.org/10.1038/embor.2012.74 10.1038/embor.2012.74]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22653443 154].
 +
#Castello A, Fischer B, Eichelbaum K, Horos R, Beckmann BM, Strein C, Davey NE, Humphreys DT, Preiss T, Steinmetz LM, Krijgsveld J, Hentze MW,  (2012) &quot;Insights into RNA biology from an atlas of mammalian mRNA-binding proteins.&quot; <i>Cell</i> <b>149</b>(6):1393&ndash;406; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22658674 22658674]; doi: [https://dx.doi.org/10.1016/j.cell.2012.04.031 10.1016/j.cell.2012.04.031]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22658674 6].
 +
#Rose CM, Venkateshwaran M, Volkening JD, Grimsrud PA, Maeda J, Bailey DJ, Park K, Howes-Podoll M, den Os D, Yeun LH, Westphall MS, Sussman MR, An&eacute; JM, Coon JJ,  (2012) &quot;Rapid phosphoproteomic and transcriptomic changes in the rhizobia-legume symbiosis.&quot; <i>Mol Cell Proteomics</i> <b>11</b>(9):724&ndash;44; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22683509 22683509]; doi: [https://dx.doi.org/10.1074/mcp.M112.019208 10.1074/mcp.M112.019208]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22683509 382].
 +
#Vial&aacute;s V, Perumal P, Gutierrez D, Xim&eacute;nez-Emb&uacute;n P, Nombela C, Gil C, Chaffin WL,  (2012) &quot;Cell surface shaving of Candida albicans biofilms, hyphae, and yeast form cells.&quot; <i>Proteomics</i> <b>12</b>(14):2331&ndash;9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22685022 22685022]; doi: [https://dx.doi.org/10.1002/pmic.201100588 10.1002/pmic.201100588]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22685022 1].
 +
#Mu&ntilde;oz J, Stange DE, Schepers AG, van de Wetering M, Koo BK, Itzkovitz S, Volckmann R, Kung KS, Koster J, Radulescu S, Myant K, Versteeg R, Sansom OJ, van Es JH, Barker N, van Oudenaarden A, Mohammed S, Heck AJ, Clevers H,  (2012) &quot;The Lgr5 intestinal stem cell signature: robust expression of proposed quiescent &#39;+4&#39; cell markers.&quot; <i>EMBO J</i> <b>31</b>(14):3079&ndash;91; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22692129 22692129]; doi: [https://dx.doi.org/10.1038/emboj.2012.166 10.1038/emboj.2012.166]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22692129 106].
 +
#Rashid ST, Humphries JD, Byron A, Dhar A, Askari JA, Selley JN, Knight D, Goldin RD, Thursz M, Humphries MJ,  (2012) &quot;Proteomic analysis of extracellular matrix from the hepatic stellate cell line LX-2 identifies CYR61 and Wnt-5a as novel constituents of fibrotic liver.&quot; <i>J Proteome Res</i> <b>11</b>(8):4052&ndash;64; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22694338 22694338]; doi: [https://dx.doi.org/10.1021/pr3000927 10.1021/pr3000927]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22694338 6].
 +
#Guyonnet B, Zabet-Moghaddam M, SanFrancisco S, Cornwall GA,  (2012) &quot;Isolation and proteomic characterization of the mouse sperm acrosomal matrix.&quot; <i>Mol Cell Proteomics</i> <b>11</b>(9):758&ndash;74; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22707618 22707618]; doi: [https://dx.doi.org/10.1074/mcp.M112.020339 10.1074/mcp.M112.020339]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22707618 5].
 +
#Bordbar A, Mo ML, Nakayasu ES, Schrimpe-Rutledge AC, Kim YM, Metz TO, Jones MB, Frank BC, Smith RD, Peterson SN, Hyduke DR, Adkins JN, Palsson BO,  (2012) &quot;Model-driven multi-omic data analysis elucidates metabolic immunomodulators of macrophage activation.&quot; <i>Mol Syst Biol</i> <b>8</b>:558; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22735334 22735334]; doi: [https://dx.doi.org/10.1038/msb.2012.21 10.1038/msb.2012.21]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22735334 42].
 +
#Graham NA, Tahmasian M, Kohli B, Komisopoulou E, Zhu M, Vivanco I, Teitell MA, Wu H, Ribas A, Lo RS, Mellinghoff IK, Mischel PS, Graeber TG,  (2012) &quot;Glucose deprivation activates a metabolic and signaling amplification loop leading to cell death.&quot; <i>Mol Syst Biol</i> <b>8</b>:589; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22735335 22735335]; doi: [https://dx.doi.org/10.1038/msb.2012.20 10.1038/msb.2012.20]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22735335 20].
 +
#Lim JW, Mathias RA, Kapp EA, Layton MJ, Faux MC, Burgess AW, Ji H, Simpson RJ,  (2012) &quot;Restoration of full-length APC protein in SW480 colon cancer cells induces exosome-mediated secretion of DKK-4.&quot; <i>Electrophoresis</i> <b>33</b>(12):1873&ndash;80; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22740476 22740476]; doi: [https://dx.doi.org/10.1002/elps.201100687 10.1002/elps.201100687]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22740476 129].
 +
#Enany S, Yoshida Y, Magdeldin S, Zhang Y, Bo X, Yamamoto T,  (2012) &quot;Extensive proteomic profiling of the secretome of European community acquired methicillin resistant Staphylococcus aureus clone.&quot; <i>Peptides</i> <b>37</b>(1):128&ndash;37; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22750914 22750914]; doi: [https://dx.doi.org/10.1016/j.peptides.2012.06.011 10.1016/j.peptides.2012.06.011]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22750914 2].
 +
#Miura N, Kirino A, Endo S, Morisaka H, Kuroda K, Takagi M, Ueda M,  (2012) &quot;Tracing putative trafficking of the glycolytic enzyme enolase via SNARE-driven unconventional secretion.&quot; <i>Eukaryot Cell</i> <b>11</b>(8):1075&ndash;82; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22753847 22753847]; doi: [https://dx.doi.org/10.1128/EC.00075-12 10.1128/EC.00075-12]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22753847 1].
 +
#Arike L, Valgepea K, Peil L, Nahku R, Adamberg K, Vilu R,  (2012) &quot;Comparison and applications of label-free absolute proteome quantification methods on Escherichia coli.&quot; <i>J Proteomics</i> <b>75</b>(17):5437&ndash;48; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22771841 22771841]; doi: [https://dx.doi.org/10.1016/j.jprot.2012.06.020 10.1016/j.jprot.2012.06.020]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22771841 6].
 +
#Bonhomme L, Valot B, Tardieu F, Zivy M,  (2012) &quot;Phosphoproteome dynamics upon changes in plant water status reveal early events associated with rapid growth adjustment in maize leaves.&quot; <i>Mol Cell Proteomics</i> <b>11</b>(10):957&ndash;72; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22787273 22787273]; doi: [https://dx.doi.org/10.1074/mcp.M111.015867 10.1074/mcp.M111.015867]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22787273 1598].
 +
#Gibbons JG, Salichos L, Slot JC, Rinker DC, McGary KL, King JG, Klich MA, Tabb DL, McDonald WH, Rokas A,  (2012) &quot;The evolutionary imprint of domestication on genome variation and function of the filamentous fungus Aspergillus oryzae.&quot; <i>Curr Biol</i> <b>22</b>(15):1403&ndash;9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22795693 22795693]; doi: [https://dx.doi.org/10.1016/j.cub.2012.05.033 10.1016/j.cub.2012.05.033]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22795693 8].
 +
#Goswami T, Li X, Smith AM, Luderowski EM, Vincent JJ, Rush J, Ballif BA,  (2012) &quot;Comparative phosphoproteomic analysis of neonatal and adult murine brain.&quot; <i>Proteomics</i> <b>12</b>(13):2185&ndash;9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22807455 22807455]; doi: [https://dx.doi.org/10.1002/pmic.201200003 10.1002/pmic.201200003]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22807455 3].
 +
#Yuan Y, Kadiyala CS, Ching TT, Hakimi P, Saha S, Xu H, Yuan C, Mullangi V, Wang L, Fivenson E, Hanson RW, Ewing R, Hsu AL, Miyagi M, Feng Z,  (2012) &quot;Enhanced energy metabolism contributes to the extended life span of calorie-restricted Caenorhabditis elegans.&quot; <i>J Biol Chem</i> <b>287</b>(37):31414&ndash;26; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22810224 22810224]; doi: [https://dx.doi.org/10.1074/jbc.M112.377275 10.1074/jbc.M112.377275]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22810224 40].
 +
#Dix MM, Simon GM, Wang C, Okerberg E, Patricelli MP, Cravatt BF,  (2012) &quot;Functional interplay between caspase cleavage and phosphorylation sculpts the apoptotic proteome.&quot; <i>Cell</i> <b>150</b>(2):426&ndash;40; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22817901 22817901]; doi: [https://dx.doi.org/10.1016/j.cell.2012.05.040 10.1016/j.cell.2012.05.040]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22817901 234].
 +
#Burgener A, Mogk K, Westmacott G, Plummer F, Ball B, Broliden K, Hasselrot K,  (2012) &quot;Salivary basic proline-rich proteins are elevated in HIV-exposed seronegative men who have sex with men.&quot; <i>AIDS</i> <b>26</b>(15):1857&ndash;67; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22824632 22824632]; doi: [https://dx.doi.org/10.1097/QAD.0b013e328357f79c 10.1097/QAD.0b013e328357f79c]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22824632 2].
 +
#Wejda M, Impens F, Takahashi N, Van Damme P, Gevaert K, Vandenabeele P,  (2012) &quot;Degradomics reveals that cleavage specificity profiles of caspase-2 and effector caspases are alike.&quot; <i>J Biol Chem</i> <b>287</b>(41):33983&ndash;95; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22825847 22825847]; doi: [https://dx.doi.org/10.1074/jbc.M112.384552 10.1074/jbc.M112.384552]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22825847 1].
 +
#Corthals A, Koller A, Martin DW, Rieger R, Chen EI, Bernaski M, Recagno G, D&aacute;valos LM,  (2012) &quot;Detecting the immune system response of a 500 year-old Inca mummy.&quot; <i>PLoS One</i> <b>7</b>(7):e41244; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22848450 22848450]; doi: [https://dx.doi.org/10.1371/journal.pone.0041244 10.1371/journal.pone.0041244]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22848450 12].
 +
#Zijnge V, Kieselbach T, Oscarsson J,  (2012) &quot;Proteomics of protein secretion by Aggregatibacter actinomycetemcomitans.&quot; <i>PLoS One</i> <b>7</b>(7):e41662; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22848560 22848560]; doi: [https://dx.doi.org/10.1371/journal.pone.0041662 10.1371/journal.pone.0041662]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22848560 171].
 +
#Wen Q, Goldenson B, Silver SJ, Schenone M, Dancik V, Huang Z, Wang LZ, Lewis TA, An WF, Li X, Bray MA, Thiollier C, Diebold L, Gilles L, Vokes MS, Moore CB, Bliss-Moreau M, Verplank L, Tolliday NJ, Mishra R, Vemula S, Shi J, Wei L, Kapur R, Lopez CK, Gerby B, Ballerini P, Pflumio F, Gilliland DG, Goldberg L, Birger Y, Izraeli S, Gamis AS, Smith FO, Woods WG, Taub J, Scherer CA, Bradner JE, Goh BC, Mercher T, Carpenter AE, Gould RJ, Clemons PA, Carr SA, Root DE, Schreiber SL, Stern AM, Crispino JD,  (2012) &quot;Identification of regulators of polyploidization presents therapeutic targets for treatment of AMKL.&quot; <i>Cell</i> <b>150</b>(3):575&ndash;89; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22863010 22863010]; doi: [https://dx.doi.org/10.1016/j.cell.2012.06.032 10.1016/j.cell.2012.06.032]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22863010 24].
 +
#Kohr MJ, Aponte A, Sun J, Gucek M, Steenbergen C, Murphy E,  (2012) &quot;Measurement of S-nitrosylation occupancy in the myocardium with cysteine-reactive tandem mass tags: short communication.&quot; <i>Circ Res</i> <b>111</b>(10):1308&ndash;12; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22865876 22865876]; doi: [https://dx.doi.org/10.1161/CIRCRESAHA.112.271320 10.1161/CIRCRESAHA.112.271320]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22865876 32].
 +
#Henriksen P, Wagner SA, Weinert BT, Sharma S, Bacinskaja G, Rehman M, Juffer AH, Walther TC, Lisby M, Choudhary C,  (2012) &quot;Proteome-wide analysis of lysine acetylation suggests its broad regulatory scope in Saccharomyces cerevisiae.&quot; <i>Mol Cell Proteomics</i> <b>11</b>(11):1510&ndash;22; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22865919 22865919]; doi: [https://dx.doi.org/10.1074/mcp.M112.017251 10.1074/mcp.M112.017251]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22865919 64].
 +
#Uhlmann T, Geoghegan VL, Thomas B, Ridlova G, Trudgian DC, Acuto O,  (2012) &quot;A method for large-scale identification of protein arginine methylation.&quot; <i>Mol Cell Proteomics</i> <b>11</b>(11):1489&ndash;99; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22865923 22865923]; doi: [https://dx.doi.org/10.1074/mcp.M112.020743 10.1074/mcp.M112.020743]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22865923 133].
 +
#Burkhart JM, Vaudel M, Gambaryan S, Radau S, Walter U, Martens L, Geiger J, Sickmann A, Zahedi RP,  (2012) &quot;The first comprehensive and quantitative analysis of human platelet protein composition allows the comparative analysis of structural and functional pathways.&quot; <i>Blood</i> <b>120</b>(15):e73&ndash;82; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22869793 22869793]; doi: [https://dx.doi.org/10.1182/blood-2012-04-416594 10.1182/blood-2012-04-416594]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22869793 4].
 +
#Vaudel M, Burkhart JM, Radau S, Zahedi RP, Martens L, Sickmann A,  (2012) &quot;Integral quantification accuracy estimation for reporter ion-based quantitative proteomics (iQuARI).&quot; <i>J Proteome Res</i> <b>11</b>(10):5072&ndash;80; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22874012 22874012]; doi: [https://dx.doi.org/10.1021/pr300247u 10.1021/pr300247u]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22874012 8].
 +
#Veitinger M, Umlauf E, Baumgartner R, Badrnya S, Porter J, Lamont J, Gerner C, Gruber CW, Oehler R, Zellner M,  (2012) &quot;A combined proteomic and genetic analysis of the highly variable platelet proteome: from plasmatic proteins and SNPs.&quot; <i>J Proteomics</i> <b>75</b>(18):5848&ndash;60; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22885077 22885077]; doi: [https://dx.doi.org/10.1016/j.jprot.2012.07.042 10.1016/j.jprot.2012.07.042]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22885077 19].
 +
#Brown RN, Sanford JA, Park JH, Deatherage BL, Champion BL, Smith RD, Heffron F, Adkins JN,  (2012) &quot;A Comprehensive Subcellular Proteomic Survey of Salmonella Grown under Phagosome-Mimicking versus Standard Laboratory Conditions.&quot; <i>Int J Proteomics</i> <b>2012</b>:123076; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22900174 22900174]; doi: [https://dx.doi.org/10.1155/2012/123076 10.1155/2012/123076]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22900174 78].
 +
#Jones ML, Collins MO, Goulding D, Choudhary JS, Rayner JC,  (2012) &quot;Analysis of protein palmitoylation reveals a pervasive role in Plasmodium development and pathogenesis.&quot; <i>Cell Host Microbe</i> <b>12</b>(2):246&ndash;58; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22901544 22901544]; doi: [https://dx.doi.org/10.1016/j.chom.2012.06.005 10.1016/j.chom.2012.06.005]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22901544 10].
 +
#Toyofuku M, Roschitzki B, Riedel K, Eberl L,  (2012) &quot;Identification of proteins associated with the Pseudomonas aeruginosa biofilm extracellular matrix.&quot; <i>J Proteome Res</i> <b>11</b>(10):4906&ndash;15; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22909304 22909304]; doi: [https://dx.doi.org/10.1021/pr300395j 10.1021/pr300395j]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22909304 4].
 +
#Jerebtsova M, Kumari N, Obuhkov Y, Nekhai S,  (2012) &quot;Adenoviral E4 gene stimulates secretion of pigmental epithelium derived factor (PEDF) that maintains long-term survival of human glomerulus-derived endothelial cells.&quot; <i>Mol Cell Proteomics</i> <b>11</b>(11):1378&ndash;88; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22915824 22915824]; doi: [https://dx.doi.org/10.1074/mcp.M112.020313 10.1074/mcp.M112.020313]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22915824 20].
 +
#Baerenfaller K, Massonnet C, Walsh S, Baginsky S, B&uuml;hlmann P, Hennig L, Hirsch-Hoffmann M, Howell KA, Kahlau S, Radziejwoski A, Russenberger D, Rutishauser D, Small I, Stekhoven D, Sulpice R, Svozil J, Wuyts N, Stitt M, Hilson P, Granier C, Gruissem W,  (2012) &quot;Systems-based analysis of Arabidopsis leaf growth reveals adaptation to water deficit.&quot; <i>Mol Syst Biol</i> <b>8</b>:606; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22929616 22929616]; doi: [https://dx.doi.org/10.1038/msb.2012.39 10.1038/msb.2012.39]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22929616 24].
 +
#Havugimana PC, Hart GT, Nepusz T, Yang H, Turinsky AL, Li Z, Wang PI, Boutz DR, Fong V, Phanse S, Babu M, Craig SA, Hu P, Wan C, Vlasblom J, Dar VU, Bezginov A, Clark GW, Wu GC, Wodak SJ, Tillier ER, Paccanaro A, Marcotte EM, Emili A,  (2012) &quot;A census of human soluble protein complexes.&quot; <i>Cell</i> <b>150</b>(5):1068&ndash;81; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22939629 22939629]; doi: [https://dx.doi.org/10.1016/j.cell.2012.08.011 10.1016/j.cell.2012.08.011]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22939629 2355].
 +
#MacDonald ML, Ciccimaro E, Prakash A, Banerjee A, Seeholzer SH, Blair IA, Hahn CG,  (2012) &quot;Biochemical fractionation and stable isotope dilution liquid chromatography-mass spectrometry for targeted and microdomain-specific protein quantification in human postmortem brain tissue.&quot; <i>Mol Cell Proteomics</i> <b>11</b>(12):1670&ndash;81; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22942359 22942359]; doi: [https://dx.doi.org/10.1074/mcp.M112.021766 10.1074/mcp.M112.021766]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22942359 14].
 +
#V&ouml;gtle FN, Burkhart JM, Rao S, Gerbeth C, Hinrichs J, Martinou JC, Chacinska A, Sickmann A, Zahedi RP, Meisinger C,  (2012) &quot;Intermembrane space proteome of yeast mitochondria.&quot; <i>Mol Cell Proteomics</i> <b>11</b>(12):1840&ndash;52; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22984289 22984289]; doi: [https://dx.doi.org/10.1074/mcp.M112.021105 10.1074/mcp.M112.021105]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22984289 30].
 +
#Kim Y, Ignatchenko V, Yao CQ, Kalatskaya I, Nyalwidhe JO, Lance RS, Gramolini AO, Troyer DA, Stein LD, Boutros PC, Medin JA, Semmes OJ, Drake RR, Kislinger T,  (2012) &quot;Identification of differentially expressed proteins in direct expressed prostatic secretions of men with organ-confined versus extracapsular prostate cancer.&quot; <i>Mol Cell Proteomics</i> <b>11</b>(12):1870&ndash;84; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22986220 22986220]; doi: [https://dx.doi.org/10.1074/mcp.M112.017889 10.1074/mcp.M112.017889]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22986220 320].
 +
#Ene IV, Heilmann CJ, Sorgo AG, Walker LA, de Koster CG, Munro CA, Klis FM, Brown AJ,  (2012) &quot;Carbon source-induced reprogramming of the cell wall proteome and secretome modulates the adherence and drug resistance of the fungal pathogen Candida albicans.&quot; <i>Proteomics</i> <b>12</b>(21):3164&ndash;79; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22997008 22997008]; doi: [https://dx.doi.org/10.1002/pmic.201200228 10.1002/pmic.201200228]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22997008 50].
 +
#Michalski A, Neuhauser N, Cox J, Mann M,  (2012) &quot;A systematic investigation into the nature of tryptic HCD spectra.&quot; <i>J Proteome Res</i> <b>11</b>(11):5479&ndash;91; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22998608 22998608]; doi: [https://dx.doi.org/10.1021/pr3007045 10.1021/pr3007045]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/22998608 35].
 +
#Bleijerveld OB, Wijten P, Cappadona S, McClellan EA, Polat AN, Raijmakers R, Sels JW, Colle L, Grasso S, van den Toorn HW, van Breukelen B, Stubbs A, Pasterkamp G, Heck AJ, Hoefer IE, Scholten A,  (2012) &quot;Deep proteome profiling of circulating granulocytes reveals bactericidal/permeability-increasing protein as a biomarker for severe atherosclerotic coronary stenosis.&quot; <i>J Proteome Res</i> <b>11</b>(11):5235&ndash;44; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23020738 23020738]; doi: [https://dx.doi.org/10.1021/pr3004375 10.1021/pr3004375]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23020738 163].
 +
#Ren YR, Chaerkady R, Hu S, Wan J, Qian J, Zhu H, Pandey A, Kern SE,  (2012) &quot;Unbiased discovery of interactions at a control locus driving expression of the cancer-specific therapeutic and diagnostic target, mesothelin.&quot; <i>J Proteome Res</i> <b>11</b>(11):5301&ndash;10; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23025254 23025254]; doi: [https://dx.doi.org/10.1021/pr300797v 10.1021/pr300797v]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23025254 67].
 +
#Motohashi R, R&ouml;diger A, Agne B, Baerenfaller K, Baginsky S,  (2012) &quot;Common and specific protein accumulation patterns in different albino/pale-green mutants reveals regulon organization at the proteome level.&quot; <i>Plant Physiol</i> <b>160</b>(4):2189&ndash;201; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23027667 23027667]; doi: [https://dx.doi.org/10.1104/pp.112.204032 10.1104/pp.112.204032]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23027667 4].
 +
#Hu CW, Lin MH, Huang HC, Ku WC, Yi TH, Tsai CF, Chen YJ, Sugiyama N, Ishihama Y, Juan HF, Wu SH,  (2012) &quot;Phosphoproteomic analysis of Rhodopseudomonas palustris reveals the role of pyruvate phosphate dikinase phosphorylation in lipid production.&quot; <i>J Proteome Res</i> <b>11</b>(11):5362&ndash;75; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23030682 23030682]; doi: [https://dx.doi.org/10.1021/pr300582p 10.1021/pr300582p]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23030682 12].
 +
#Ubaida Mohien C, Colquhoun DR, Mathias DK, Gibbons JG, Armistead JS, Rodriguez MC, Rodriguez MH, Edwards NJ, Hartler J, Thallinger GG, Graham DR, Martinez-Barnetche J, Rokas A, Dinglasan RR,  (2013) &quot;A bioinformatics approach for integrated transcriptomic and proteomic comparative analyses of model and non-sequenced anopheline vectors of human malaria parasites.&quot; <i>Mol Cell Proteomics</i> <b>12</b>(1):120&ndash;31; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23082028 23082028]; doi: [https://dx.doi.org/10.1074/mcp.M112.019596 10.1074/mcp.M112.019596]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23082028 97].
 +
#Mathew R, Seiler MP, Scanlon ST, Mao AP, Constantinides MG, Bertozzi-Villa C, Singer JD, Bendelac A,  (2012) &quot;BTB-ZF factors recruit the E3 ligase cullin 3 to regulate lymphoid effector programs.&quot; <i>Nature</i> <b>491</b>(7425):618&ndash;21; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23086144 23086144]; doi: [https://dx.doi.org/10.1038/nature11548 10.1038/nature11548]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23086144 8].
 +
#Butter F, Bucerius F, Michel M, Cicova Z, Mann M, Janzen CJ,  (2013) &quot;Comparative proteomics of two life cycle stages of stable isotope-labeled Trypanosoma brucei reveals novel components of the parasite&#39;s host adaptation machinery.&quot; <i>Mol Cell Proteomics</i> <b>12</b>(1):172&ndash;9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23090971 23090971]; doi: [https://dx.doi.org/10.1074/mcp.M112.019224 10.1074/mcp.M112.019224]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23090971 94].
 +
#Marguerat S, Schmidt A, Codlin S, Chen W, Aebersold R, B&auml;hler J,  (2012) &quot;Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells.&quot; <i>Cell</i> <b>151</b>(3):671&ndash;83; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23101633 23101633]; doi: [https://dx.doi.org/10.1016/j.cell.2012.09.019 10.1016/j.cell.2012.09.019]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23101633 33].
 +
#Pointner J, Persson J, Prasad P, Norman-Axelsson U, Str&aring;lfors A, Khorosjutina O, Krietenstein N, Svensson JP, Ekwall K, Korber P,  (2012) &quot;CHD1 remodelers regulate nucleosome spacing in vitro and align nucleosomal arrays over gene coding regions in S. pombe.&quot; <i>EMBO J</i> <b>31</b>(23):4388&ndash;403; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23103765 23103765]; doi: [https://dx.doi.org/10.1038/emboj.2012.289 10.1038/emboj.2012.289]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23103765 30].
 +
#Oliveira AP, Ludwig C, Picotti P, Kogadeeva M, Aebersold R, Sauer U,  (2012) &quot;Regulation of yeast central metabolism by enzyme phosphorylation.&quot; <i>Mol Syst Biol</i> <b>8</b>:623; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23149688 23149688]; doi: [https://dx.doi.org/10.1038/msb.2012.55 10.1038/msb.2012.55]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23149688 26].
 +
#Muraoka S, Kume H, Adachi J, Shiromizu T, Watanabe S, Masuda T, Ishihama Y, Tomonaga T,  (2013) &quot;In-depth membrane proteomic study of breast cancer tissues for the generation of a chromosome-based protein list.&quot; <i>J Proteome Res</i> <b>12</b>(1):208&ndash;13; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23153008 23153008]; doi: [https://dx.doi.org/10.1021/pr300824m 10.1021/pr300824m]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23153008 36].
 +
#Fonslow BR, Stein BD, Webb KJ, Xu T, Choi J, Park SK, Yates JR 3rd,  (2013) &quot;Digestion and depletion of abundant proteins improves proteomic coverage.&quot; <i>Nat Methods</i> <b>10</b>(1):54&ndash;6; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23160281 23160281]; doi: [https://dx.doi.org/10.1038/nmeth.2250 10.1038/nmeth.2250]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23160281 132].
 +
#Kliemt S, Lange C, Otto W, Hintze V, M&ouml;ller S, von Bergen M, Hempel U, Kalkhof S,  (2013) &quot;Sulfated hyaluronan containing collagen matrices enhance cell-matrix-interaction, endocytosis, and osteogenic differentiation of human mesenchymal stromal cells.&quot; <i>J Proteome Res</i> <b>12</b>(1):378&ndash;89; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23170904 23170904]; doi: [https://dx.doi.org/10.1021/pr300640h 10.1021/pr300640h]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23170904 30].
 +
#Hoehenwarter W, Thomas M, Nukarinen E, Egelhofer V, R&ouml;hrig H, Weckwerth W, Conrath U, Beckers GJ,  (2013) &quot;Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.&quot; <i>Mol Cell Proteomics</i> <b>12</b>(2):369&ndash;80; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23172892 23172892]; doi: [https://dx.doi.org/10.1074/mcp.M112.020560 10.1074/mcp.M112.020560]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23172892 6].
 +
#Yamana R, Iwasaki M, Wakabayashi M, Nakagawa M, Yamanaka S, Ishihama Y,  (2013) &quot;Rapid and deep profiling of human induced pluripotent stem cell proteome by one-shot NanoLC-MS/MS analysis with meter-scale monolithic silica columns.&quot; <i>J Proteome Res</i> <b>12</b>(1):214&ndash;21; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23210603 23210603]; doi: [https://dx.doi.org/10.1021/pr300837u 10.1021/pr300837u]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23210603 129].
 +
#Meding S, Martin K, Gustafsson OJ, Eddes JS, Hack S, Oehler MK, Hoffmann P,  (2013) &quot;Tryptic peptide reference data sets for MALDI imaging mass spectrometry on formalin-fixed ovarian cancer tissues.&quot; <i>J Proteome Res</i> <b>12</b>(1):308&ndash;15; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23214983 23214983]; doi: [https://dx.doi.org/10.1021/pr300996x 10.1021/pr300996x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23214983 31].
 +
#Tauro BJ, Greening DW, Mathias RA, Mathivanan S, Ji H, Simpson RJ,  (2013) &quot;Two distinct populations of exosomes are released from LIM1863 colon carcinoma cell-derived organoids.&quot; <i>Mol Cell Proteomics</i> <b>12</b>(3):587&ndash;98; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23230278 23230278]; doi: [https://dx.doi.org/10.1074/mcp.M112.021303 10.1074/mcp.M112.021303]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23230278 20].
 +
#Segura V, Medina-Aunon JA, Guruceaga E, Gharbi SI, Gonz&aacute;lez-Tejedo C, S&aacute;nchez del Pino MM, Canals F, Fuentes M, Casal JI, Mart&iacute;nez-Bartolom&eacute; S, Elortza F, Mato JM, Arizmendi JM, Abian J, Oliveira E, Gil C, Vivanco F, Blanco F, Albar JP, Corrales FJ,  (2013) &quot;Spanish human proteome project: dissection of chromosome 16.&quot; <i>J Proteome Res</i> <b>12</b>(1):112&ndash;22; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23234512 23234512]; doi: [https://dx.doi.org/10.1021/pr300898u 10.1021/pr300898u]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23234512 43].
 +
#Farcas AM, Blackledge NP, Sudbery I, Long HK, McGouran JF, Rose NR, Lee S, Sims D, Cerase A, Sheahan TW, Koseki H, Brockdorff N, Ponting CP, Kessler BM, Klose RJ,  (2012) &quot;KDM2B links the Polycomb Repressive Complex 1 (PRC1) to recognition of CpG islands.&quot; <i>Elife</i> <b>1</b>:e00205; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23256043 23256043]; doi: [https://dx.doi.org/10.7554/eLife.00205 10.7554/eLife.00205]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23256043 5].
 +
#Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA,  (2013) &quot;Refined preparation and use of anti-diglycine remnant (K-&epsilon;-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.&quot; <i>Mol Cell Proteomics</i> <b>12</b>(3):825&ndash;31; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23266961 23266961]; doi: [https://dx.doi.org/10.1074/mcp.O112.027094 10.1074/mcp.O112.027094]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23266961 72].
 +
#Maccarrone G, Rewerts C, Lebar M, Turck CW, Martins-de-Souza D,  (2013) &quot;Proteome profiling of peripheral mononuclear cells from human blood.&quot; <i>Proteomics</i> <b>13</b>(5):893&ndash;7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23281267 23281267]; doi: [https://dx.doi.org/10.1002/pmic.201200377 10.1002/pmic.201200377]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23281267 3].
 +
#Kentsis A, Shulman A, Ahmed S, Brennan E, Monuteaux MC, Lee YH, Lipsett S, Paulo JA, Dedeoglu F, Fuhlbrigge R, Bachur R, Bradwin G, Arditi M, Sundel RP, Newburger JW, Steen H, Kim S,  (2013) &quot;Urine proteomics for discovery of improved diagnostic markers of Kawasaki disease.&quot; <i>EMBO Mol Med</i> <b>5</b>(2):210&ndash;20; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23281308 23281308]; doi: [https://dx.doi.org/10.1002/emmm.201201494 10.1002/emmm.201201494]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23281308 145].
 +
#Chen JS, Broadus MR, McLean JR, Feoktistova A, Ren L, Gould KL,  (2013) &quot;Comprehensive proteomics analysis reveals new substrates and regulators of the fission yeast clp1/cdc14 phosphatase.&quot; <i>Mol Cell Proteomics</i> <b>12</b>(5):1074&ndash;86; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23297348 23297348]; doi: [https://dx.doi.org/10.1074/mcp.M112.025924 10.1074/mcp.M112.025924]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23297348 190].
 +
#Holewinski RJ, Jin Z, Powell MJ, Maust MD, Van Eyk JE,  (2013) &quot;A fast and reproducible method for albumin isolation and depletion from serum and cerebrospinal fluid.&quot; <i>Proteomics</i> <b>13</b>(5):743&ndash;50; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23300121 23300121]; doi: [https://dx.doi.org/10.1002/pmic.201200192 10.1002/pmic.201200192]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23300121 27].
 +
#Hahne H, Sobotzki N, Nyberg T, Helm D, Borodkin VS, van Aalten DM, Agnew B, Kuster B,  (2013) &quot;Proteome wide purification and identification of O-GlcNAc-modified proteins using click chemistry and mass spectrometry.&quot; <i>J Proteome Res</i> <b>12</b>(2):927&ndash;36; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23301498 23301498]; doi: [https://dx.doi.org/10.1021/pr300967y 10.1021/pr300967y]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23301498 9].
 +
#Strader MB, Hervey WJ 4th, Costantino N, Fujigaki S, Chen CY, Akal-Strader A, Ihunnah CA, Makusky AJ, Court DL, Markey SP, Kowalak JA,  (2013) &quot;A coordinated proteomic approach for identifying proteins that interact with the E. coli ribosomal protein S12.&quot; <i>J Proteome Res</i> <b>12</b>(3):1289&ndash;99; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23305560 23305560]; doi: [https://dx.doi.org/10.1021/pr3009435 10.1021/pr3009435]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23305560 209].
 +
#Shiromizu T, Adachi J, Watanabe S, Murakami T, Kuga T, Muraoka S, Tomonaga T,  (2013) &quot;Identification of missing proteins in the neXtProt database and unregistered phosphopeptides in the PhosphoSitePlus database as part of the Chromosome-centric Human Proteome Project.&quot; <i>J Proteome Res</i> <b>12</b>(6):2414&ndash;21; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23312004 23312004]; doi: [https://dx.doi.org/10.1021/pr300825v 10.1021/pr300825v]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23312004 232].
 +
#Krahmer N, Hilger M, Kory N, Wilfling F, Stoehr G, Mann M, Farese RV Jr, Walther TC,  (2013) &quot;Protein correlation profiles identify lipid droplet proteins with high confidence.&quot; <i>Mol Cell Proteomics</i> <b>12</b>(5):1115&ndash;26; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23319140 23319140]; doi: [https://dx.doi.org/10.1074/mcp.M112.020230 10.1074/mcp.M112.020230]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23319140 18].
 +
#Wenger CD, Coon JJ,  (2013) &quot;A proteomics search algorithm specifically designed for high-resolution tandem mass spectra.&quot; <i>J Proteome Res</i> <b>12</b>(3):1377&ndash;86; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23323968 23323968]; doi: [https://dx.doi.org/10.1021/pr301024c 10.1021/pr301024c]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23323968 15].
 +
#Lindner SE, Swearingen KE, Harupa A, Vaughan AM, Sinnis P, Moritz RL, Kappe SH,  (2013) &quot;Total and putative surface proteomics of malaria parasite salivary gland sporozoites.&quot; <i>Mol Cell Proteomics</i> <b>12</b>(5):1127&ndash;43; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23325771 23325771]; doi: [https://dx.doi.org/10.1074/mcp.M112.024505 10.1074/mcp.M112.024505]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23325771 72].
 +
#Zhang H, Zhou H, Berke L, Heck AJ, Mohammed S, Scheres B, Menke FL,  (2013) &quot;Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.&quot; <i>Mol Cell Proteomics</i> <b>12</b>(5):1158&ndash;69; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23328941 23328941]; doi: [https://dx.doi.org/10.1074/mcp.M112.021220 10.1074/mcp.M112.021220]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23328941 11].
 +
#Wang F, Blanchard AP, Elisma F, Granger M, Xu H, Bennett SA, Figeys D, Zou H,  (2013) &quot;Phosphoproteome analysis of an early onset mouse model (TgCRND8) of Alzheimer&#39;s disease reveals temporal changes in neuronal and glia signaling pathways.&quot; <i>Proteomics</i> <b>13</b>(8):1292&ndash;305; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23335269 23335269]; doi: [https://dx.doi.org/10.1002/pmic.201200415 10.1002/pmic.201200415]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23335269 63].
 +
#Albrethsen J, Agner J, Piersma SR, H&oslash;jrup P, Pham TV, Weldingh K, Jimenez CR, Andersen P, Rosenkrands I,  (2013) &quot;Proteomic profiling of Mycobacterium tuberculosis identifies nutrient-starvation-responsive toxin-antitoxin systems.&quot; <i>Mol Cell Proteomics</i> <b>12</b>(5):1180&ndash;91; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23345537 23345537]; doi: [https://dx.doi.org/10.1074/mcp.M112.018846 10.1074/mcp.M112.018846]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23345537 59].
 +
#Hau&szlig;mann U, Wolters DA, Fr&auml;nzel B, Eltis LD, Poetsch A,  (2013) &quot;Physiological adaptation of the Rhodococcus jostii RHA1 membrane proteome to steroids as growth substrates.&quot; <i>J Proteome Res</i> <b>12</b>(3):1188&ndash;98; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23360181 23360181]; doi: [https://dx.doi.org/10.1021/pr300816n 10.1021/pr300816n]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23360181 220].
 +
#Lee HJ, Jeong SK, Na K, Lee MJ, Lee SH, Lim JS, Cha HJ, Cho JY, Kwon JY, Kim H, Song SY, Yoo JS, Park YM, Kim H, Hancock WS, Paik YK,  (2013) &quot;Comprehensive genome-wide proteomic analysis of human placental tissue for the Chromosome-Centric Human Proteome Project.&quot; <i>J Proteome Res</i> <b>12</b>(6):2458&ndash;66; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23362793 23362793]; doi: [https://dx.doi.org/10.1021/pr301040g 10.1021/pr301040g]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23362793 47].
 +
#Rhee HW, Zou P, Udeshi ND, Martell JD, Mootha VK, Carr SA, Ting AY,  (2013) &quot;Proteomic mapping of mitochondria in living cells via spatially restricted enzymatic tagging.&quot; <i>Science</i> <b>339</b>(6125):1328&ndash;31; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23371551 23371551]; doi: [https://dx.doi.org/10.1126/science.1230593 10.1126/science.1230593]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23371551 64].
 +
#Zanivan S, Meves A, Behrendt K, Schoof EM, Neilson LJ, Cox J, Tang HR, Kalna G, van Ree JH, van Deursen JM, Trempus CS, Machesky LM, Linding R, Wickstr&ouml;m SA, F&auml;ssler R, Mann M,  (2013) &quot;In vivo SILAC-based proteomics reveals phosphoproteome changes during mouse skin carcinogenesis.&quot; <i>Cell Rep</i> <b>3</b>(2):552&ndash;66; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23375375 23375375]; doi: [https://dx.doi.org/10.1016/j.celrep.2013.01.003 10.1016/j.celrep.2013.01.003]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23375375 315].
 +
#Ekkebus R, van Kasteren SI, Kulathu Y, Scholten A, Berlin I, Geurink PP, de Jong A, Goerdayal S, Neefjes J, Heck AJ, Komander D, Ovaa H,  (2013) &quot;On terminal alkynes that can react with active-site cysteine nucleophiles in proteases.&quot; <i>J Am Chem Soc</i> <b>135</b>(8):2867&ndash;70; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23387960 23387960]; doi: [https://dx.doi.org/10.1021/ja309802n 10.1021/ja309802n]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23387960 1].
 +
#Cho CK, Drabovich AP, Karagiannis GS, Mart&iacute;nez-Morillo E, Dason S, Dimitromanolakis A, Diamandis EP,  (2013) &quot;Quantitative proteomic analysis of amniocytes reveals potentially dysregulated molecular networks in Down syndrome.&quot; <i>Clin Proteomics</i> <b>10</b>(1):2; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23394617 23394617]; doi: [https://dx.doi.org/10.1186/1559-0275-10-2 10.1186/1559-0275-10-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23394617 30].
 +
#de Graaf EL, Vermeij WP, de Waard MC, Rijksen Y, van der Pluijm I, Hoogenraad CC, Hoeijmakers JH, Altelaar AF, Heck AJ,  (2013) &quot;Spatio-temporal analysis of molecular determinants of neuronal degeneration in the aging mouse cerebellum.&quot; <i>Mol Cell Proteomics</i> <b>12</b>(5):1350&ndash;62; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23399551 23399551]; doi: [https://dx.doi.org/10.1074/mcp.M112.024950 10.1074/mcp.M112.024950]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23399551 120].
 +
#Mohammed H, D&#39;Santos C, Serandour AA, Ali HR, Brown GD, Atkins A, Rueda OM, Holmes KA, Theodorou V, Robinson JL, Zwart W, Saadi A, Ross-Innes CS, Chin SF, Menon S, Stingl J, Palmieri C, Caldas C, Carroll JS,  (2013) &quot;Endogenous purification reveals GREB1 as a key estrogen receptor regulatory factor.&quot; <i>Cell Rep</i> <b>3</b>(2):342&ndash;9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23403292 23403292]; doi: [https://dx.doi.org/10.1016/j.celrep.2013.01.010 10.1016/j.celrep.2013.01.010]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23403292 9].
 +
#Sun B, Ma L, Yan X, Lee D, Alexander V, Hohmann LJ, Lorang C, Chandrasena L, Tian Q, Hood L,  (2013) &quot;N-glycoproteome of E14.Tg2a mouse embryonic stem cells.&quot; <i>PLoS One</i> <b>8</b>(2):e55722; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23405203 23405203]; doi: [https://dx.doi.org/10.1371/journal.pone.0055722 10.1371/journal.pone.0055722]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23405203 40].
 +
#Colinet H, Overgaard J, Com E, S&oslash;rensen JG,  (2013) &quot;Proteomic profiling of thermal acclimation in Drosophila melanogaster.&quot; <i>Insect Biochem Mol Biol</i> <b>43</b>(4):352&ndash;65; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23416132 23416132]; doi: [https://dx.doi.org/10.1016/j.ibmb.2013.01.006 10.1016/j.ibmb.2013.01.006]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23416132 50].
 +
#Spruijt CG, Gnerlich F, Smits AH, Pfaffeneder T, Jansen PW, Bauer C, M&uuml;nzel M, Wagner M, M&uuml;ller M, Khan F, Eberl HC, Mensinga A, Brinkman AB, Lephikov K, M&uuml;ller U, Walter J, Boelens R, van Ingen H, Leonhardt H, Carell T, Vermeulen M,  (2013) &quot;Dynamic readers for 5-(hydroxy)methylcytosine and its oxidized derivatives.&quot; <i>Cell</i> <b>152</b>(5):1146&ndash;59; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23434322 23434322]; doi: [https://dx.doi.org/10.1016/j.cell.2013.02.004 10.1016/j.cell.2013.02.004]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23434322 249].
 +
#Chapel A, Kieffer-Jaquinod S, Sagn&eacute; C, Verdon Q, Ivaldi C, Mellal M, Thirion J, Jadot M, Bruley C, Garin J, Gasnier B, Journet A,  (2013) &quot;An extended proteome map of the lysosomal membrane reveals novel potential transporters.&quot; <i>Mol Cell Proteomics</i> <b>12</b>(6):1572&ndash;88; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23436907 23436907]; doi: [https://dx.doi.org/10.1074/mcp.M112.021980 10.1074/mcp.M112.021980]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23436907 1].
 +
#Fabietti A, Gaspari M, Krishnan S, Quirino A, Liberto MC, Cuda G, Foc&agrave; A,  (2013) &quot;Shotgun proteomic analysis of two Bartonella quintana strains.&quot; <i>Proteomics</i> <b>13</b>(8):1375&ndash;8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23450663 23450663]; doi: [https://dx.doi.org/10.1002/pmic.201200165 10.1002/pmic.201200165]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23450663 8].
 +
#Varjosalo M, Sacco R, Stukalov A, van Drogen A, Planyavsky M, Hauri S, Aebersold R, Bennett KL, Colinge J, Gstaiger M, Superti-Furga G,  (2013) &quot;Interlaboratory reproducibility of large-scale human protein-complex analysis by standardized AP-MS.&quot; <i>Nat Methods</i> <b>10</b>(4):307&ndash;14; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23455922 23455922]; doi: [https://dx.doi.org/10.1038/nmeth.2400 10.1038/nmeth.2400]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23455922 288].
 +
#Fanayan S, Smith JT, Lee LY, Yan F, Snyder M, Hancock WS, Nice E,  (2013) &quot;Proteogenomic analysis of human colon carcinoma cell lines LIM1215, LIM1899, and LIM2405.&quot; <i>J Proteome Res</i> <b>12</b>(4):1732&ndash;42; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23458625 23458625]; doi: [https://dx.doi.org/10.1021/pr3010869 10.1021/pr3010869]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23458625 136].
 +
#Rao SA, Carolan JC, Wilkinson TL,  (2013) &quot;Proteomic profiling of cereal aphid saliva reveals both ubiquitous and adaptive secreted proteins.&quot; <i>PLoS One</i> <b>8</b>(2):e57413; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23460852 23460852]; doi: [https://dx.doi.org/10.1371/journal.pone.0057413 10.1371/journal.pone.0057413]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23460852 16].
 +
#Gunaratne J, Schmidt A, Quandt A, Neo SP, Sara&ccedil; OS, Gracia T, Loguercio S, Ahrn&eacute; E, Xia RL, Tan KH, L&ouml;ssner C, B&auml;hler J, Beyer A, Blackstock W, Aebersold R,  (2013) &quot;Extensive mass spectrometry-based analysis of the fission yeast proteome: the Schizosaccharomyces pombe PeptideAtlas.&quot; <i>Mol Cell Proteomics</i> <b>12</b>(6):1741&ndash;51; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23462206 23462206]; doi: [https://dx.doi.org/10.1074/mcp.M112.023754 10.1074/mcp.M112.023754]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23462206 384].
 +
#Hassan C, Kester MG, de Ru AH, Hombrink P, Drijfhout JW, Nijveen H, Leunissen JA, Heemskerk MH, Falkenburg JH, van Veelen PA,  (2013) &quot;The human leukocyte antigen-presented ligandome of B lymphocytes.&quot; <i>Mol Cell Proteomics</i> <b>12</b>(7):1829&ndash;43; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23481700 23481700]; doi: [https://dx.doi.org/10.1074/mcp.M112.024810 10.1074/mcp.M112.024810]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23481700 191].
 +
#Urbaniak MD, Martin DM, Ferguson MA,  (2013) &quot;Global quantitative SILAC phosphoproteomics reveals differential phosphorylation is widespread between the procyclic and bloodstream form lifecycle stages of Trypanosoma brucei.&quot; <i>J Proteome Res</i> <b>12</b>(5):2233&ndash;44; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23485197 23485197]; doi: [https://dx.doi.org/10.1021/pr400086y 10.1021/pr400086y]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23485197 148].
 +
#van Nuland R, Smits AH, Pallaki P, Jansen PW, Vermeulen M, Timmers HT,  (2013) &quot;Quantitative dissection and stoichiometry determination of the human SET1/MLL histone methyltransferase complexes.&quot; <i>Mol Cell Biol</i> <b>33</b>(10):2067&ndash;77; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23508102 23508102]; doi: [https://dx.doi.org/10.1128/MCB.01742-12 10.1128/MCB.01742-12]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23508102 52].
 +
#Papachristou EK, Roumeliotis TI, Chrysagi A, Trigoni C, Charvalos E, Townsend PA, Pavlakis K, Garbis SD,  (2013) &quot;The shotgun proteomic study of the human ThinPrep cervical smear using iTRAQ mass-tagging and 2D LC-FT-Orbitrap-MS: the detection of the human papillomavirus at the protein level.&quot; <i>J Proteome Res</i> <b>12</b>(5):2078&ndash;89; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23510160 23510160]; doi: [https://dx.doi.org/10.1021/pr301067r 10.1021/pr301067r]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23510160 3].
 +
#Ori A, Banterle N, Iskar M, Andr&eacute;s-Pons A, Escher C, Khanh Bui H, Sparks L, Solis-Mezarino V, Rinner O, Bork P, Lemke EA, Beck M,  (2013) &quot;Cell type-specific nuclear pores: a case in point for context-dependent stoichiometry of molecular machines.&quot; <i>Mol Syst Biol</i> <b>9</b>:648; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23511206 23511206]; doi: [https://dx.doi.org/10.1038/msb.2013.4 10.1038/msb.2013.4]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23511206 30].
 +
#Bendz M, Skwark M, Nilsson D, Granholm V, Cristobal S, K&auml;ll L, Elofsson A,  (2013) &quot;Membrane protein shaving with thermolysin can be used to evaluate topology predictors.&quot; <i>Proteomics</i> <b>13</b>(9):1467&ndash;80; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23512833 23512833]; doi: [https://dx.doi.org/10.1002/pmic.201200517 10.1002/pmic.201200517]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23512833 8].
 +
#Cramer GR, Van Sluyter SC, Hopper DW, Pascovici D, Keighley T, Haynes PA,  (2013) &quot;Proteomic analysis indicates massive changes in metabolism prior to the inhibition of growth and photosynthesis of grapevine (Vitis vinifera L.) in response to water deficit.&quot; <i>BMC Plant Biol</i> <b>13</b>:49; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23514573 23514573]; doi: [https://dx.doi.org/10.1186/1471-2229-13-49 10.1186/1471-2229-13-49]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23514573 96].
 +
#Bradshaw E, Saalbach G, McArthur M,  (2013) &quot;Proteomic survey of the Streptomyces coelicolor nucleoid.&quot; <i>J Proteomics</i> <b>83</b>:37&ndash;46; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23523638 23523638]; doi: [https://dx.doi.org/10.1016/j.jprot.2013.02.033 10.1016/j.jprot.2013.02.033]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23523638 6].
 +
#Casado P, Rodriguez-Prados JC, Cosulich SC, Guichard S, Vanhaesebroeck B, Joel S, Cutillas PR,  (2013) &quot;Kinase-substrate enrichment analysis provides insights into the heterogeneity of signaling pathway activation in leukemia cells.&quot; <i>Sci Signal</i> <b>6</b>(268):rs6; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23532336 23532336]; doi: [https://dx.doi.org/10.1126/scisignal.2003573 10.1126/scisignal.2003573]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23532336 160].
 +
#Webb KJ, Xu T, Park SK, Yates JR 3rd,  (2013) &quot;Modified MuDPIT separation identified 4488 proteins in a system-wide analysis of quiescence in yeast.&quot; <i>J Proteome Res</i> <b>12</b>(5):2177&ndash;84; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23540446 23540446]; doi: [https://dx.doi.org/10.1021/pr400027m 10.1021/pr400027m]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23540446 135].
 +
#Sun B, Utleg AG, Hu Z, Qin S, Keller A, Lorang C, Gray L, Brightman A, Lee D, Alexander VM, Ranish JA, Moritz RL, Hood L,  (2013) &quot;Glycocapture-assisted global quantitative proteomics (gagQP) reveals multiorgan responses in serum toxicoproteome.&quot; <i>J Proteome Res</i> <b>12</b>(5):2034&ndash;44; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23540550 23540550]; doi: [https://dx.doi.org/10.1021/pr301178a 10.1021/pr301178a]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23540550 58].
 +
#Kim J, Olinares PD, Oh SH, Ghisaura S, Poliakov A, Ponnala L, van Wijk KJ,  (2013) &quot;Modified Clp protease complex in the ClpP3 null mutant and consequences for chloroplast development and function in Arabidopsis.&quot; <i>Plant Physiol</i> <b>162</b>(1):157&ndash;79; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23548781 23548781]; doi: [https://dx.doi.org/10.1104/pp.113.215699 10.1104/pp.113.215699]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23548781 118].
 +
#Ji H, Greening DW, Barnes TW, Lim JW, Tauro BJ, Rai A, Xu R, Adda C, Mathivanan S, Zhao W, Xue Y, Xu T, Zhu HJ, Simpson RJ,  (2013) &quot;Proteome profiling of exosomes derived from human primary and metastatic colorectal cancer cells reveal differential expression of key metastatic factors and signal transduction components.&quot; <i>Proteomics</i> <b>13</b>(10-11):1672&ndash;86; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23585443 23585443]; doi: [https://dx.doi.org/10.1002/pmic.201200562 10.1002/pmic.201200562]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23585443 51].
 +
#Biarc J, Chalkley RJ, Burlingame AL, Bradshaw RA,  (2013) &quot;Dissecting the roles of tyrosines 490 and 785 of TrkA protein in the induction of downstream protein phosphorylation using chimeric receptors.&quot; <i>J Biol Chem</i> <b>288</b>(23):16606&ndash;18; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23589303 23589303]; doi: [https://dx.doi.org/10.1074/jbc.M113.475285 10.1074/jbc.M113.475285]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23589303 210].
 +
#Zhuang G, Yu K, Jiang Z, Chung A, Yao J, Ha C, Toy K, Soriano R, Haley B, Blackwood E, Sampath D, Bais C, Lill JR, Ferrara N,  (2013) &quot;Phosphoproteomic analysis implicates the mTORC2-FoxO1 axis in VEGF signaling and feedback activation of receptor tyrosine kinases.&quot; <i>Sci Signal</i> <b>6</b>(271):ra25; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23592840 23592840]; doi: [https://dx.doi.org/10.1126/scisignal.2003572 10.1126/scisignal.2003572]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23592840 7].
 +
#Varjosalo M, Keskitalo S, Van Drogen A, Nurkkala H, Vichalkovski A, Aebersold R, Gstaiger M,  (2013) &quot;The protein interaction landscape of the human CMGC kinase group.&quot; <i>Cell Rep</i> <b>3</b>(4):1306&ndash;20; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23602568 23602568]; doi: [https://dx.doi.org/10.1016/j.celrep.2013.03.027 10.1016/j.celrep.2013.03.027]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23602568 114].
 +
#Marcone S, Fitzgerald DJ,  (2013) &quot;Proteomic identification of the candidate target proteins of 15-deoxy-delta12,14-prostaglandin J2.&quot; <i>Proteomics</i> <b>13</b>(14):2135&ndash;9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23606334 23606334]; doi: [https://dx.doi.org/10.1002/pmic.201200289 10.1002/pmic.201200289]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23606334 62].
 +
#Halim VA, Alvarez-Fern&aacute;ndez M, Xu YJ, Aprelia M, van den Toorn HW, Heck AJ, Mohammed S, Medema RH,  (2013) &quot;Comparative phosphoproteomic analysis of checkpoint recovery identifies new regulators of the DNA damage response.&quot; <i>Sci Signal</i> <b>6</b>(272):rs9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23612710 23612710]; doi: [https://dx.doi.org/10.1126/scisignal.2003664 10.1126/scisignal.2003664]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23612710 247].
 +
#Kooij V, Holewinski RJ, Murphy AM, Van Eyk JE,  (2013) &quot;Characterization of the cardiac myosin binding protein-C phosphoproteome in healthy and failing human hearts.&quot; <i>J Mol Cell Cardiol</i> <b>60</b>:116&ndash;20; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23619294 23619294]; doi: [https://dx.doi.org/10.1016/j.yjmcc.2013.04.012 10.1016/j.yjmcc.2013.04.012]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23619294 87].
 +
#Casado P, Alcolea MP, Iorio F, Rodr&iacute;guez-Prados JC, Vanhaesebroeck B, Saez-Rodriguez J, Joel S, Cutillas PR,  (2013) &quot;Phosphoproteomics data classify hematological cancer cell lines according to tumor type and sensitivity to kinase inhibitors.&quot; <i>Genome Biol</i> <b>14</b>(4):R37; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23628362 23628362]; doi: [https://dx.doi.org/10.1186/gb-2013-14-4-r37 10.1186/gb-2013-14-4-r37]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23628362 75].
 +
#Sheynkman GM, Shortreed MR, Frey BL, Smith LM,  (2013) &quot;Discovery and mass spectrometric analysis of novel splice-junction peptides using RNA-Seq.&quot; <i>Mol Cell Proteomics</i> <b>12</b>(8):2341&ndash;53; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23629695 23629695]; doi: [https://dx.doi.org/10.1074/mcp.O113.028142 10.1074/mcp.O113.028142]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23629695 28].
 +
#Wijten P, van Holten T, Woo LL, Bleijerveld OB, Roest M, Heck AJ, Scholten A,  (2013) &quot;High precision platelet releasate definition by quantitative reversed protein profiling--brief report.&quot; <i>Arterioscler Thromb Vasc Biol</i> <b>33</b>(7):1635&ndash;8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23640497 23640497]; doi: [https://dx.doi.org/10.1161/ATVBAHA.113.301147 10.1161/ATVBAHA.113.301147]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23640497 82].
 +
#Tauro BJ, Mathias RA, Greening DW, Gopal SK, Ji H, Kapp EA, Coleman BM, Hill AF, Kusebauch U, Hallows JL, Shteynberg D, Moritz RL, Zhu HJ, Simpson RJ,  (2013) &quot;Oncogenic H-ras reprograms Madin-Darby canine kidney (MDCK) cell-derived exosomal proteins following epithelial-mesenchymal transition.&quot; <i>Mol Cell Proteomics</i> <b>12</b>(8):2148&ndash;59; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23645497 23645497]; doi: [https://dx.doi.org/10.1074/mcp.M112.027086 10.1074/mcp.M112.027086]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23645497 187].
 +
#M&uuml;ller SA, Findei&szlig; S, Pernitzsch SR, Wissenbach DK, Stadler PF, Hofacker IL, von Bergen M, Kalkhof S,  (2013) &quot;Identification of new protein coding sequences and signal peptidase cleavage sites of Helicobacter pylori strain 26695 by proteogenomics.&quot; <i>J Proteomics</i> <b>86</b>:27&ndash;42; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23665149 23665149]; doi: [https://dx.doi.org/10.1016/j.jprot.2013.04.036 10.1016/j.jprot.2013.04.036]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23665149 63].
 +
#Marimuthu A, Chavan S, Sathe G, Sahasrabuddhe NA, Srikanth SM, Renuse S, Ahmad S, Radhakrishnan A, Barbhuiya MA, Kumar RV, Harsha HC, Sidransky D, Califano J, Pandey A, Chatterjee A,  (2013) &quot;Identification of head and neck squamous cell carcinoma biomarker candidates through proteomic analysis of cancer cell secretome.&quot; <i>Biochim Biophys Acta</i> <b>1834</b>(11):2308&ndash;16; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23665456 23665456]; doi: [https://dx.doi.org/10.1016/j.bbapap.2013.04.029 10.1016/j.bbapap.2013.04.029]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23665456 23].
 +
#Chen Z, Wen B, Wang Q, Tong W, Guo J, Bai X, Zhao J, Sun Y, Tang Q, Lin Z, Lin L, Liu S,  (2013) &quot;Quantitative proteomics reveals the temperature-dependent proteins encoded by a series of cluster genes in thermoanaerobacter tengcongensis.&quot; <i>Mol Cell Proteomics</i> <b>12</b>(8):2266&ndash;77; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23665590 23665590]; doi: [https://dx.doi.org/10.1074/mcp.M112.025817 10.1074/mcp.M112.025817]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23665590 84].
 +
#Wu L, Candille SI, Choi Y, Xie D, Jiang L, Li-Pook-Than J, Tang H, Snyder M,  (2013) &quot;Variation and genetic control of protein abundance in humans.&quot; <i>Nature</i> <b>499</b>(7456):79&ndash;82; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23676674 23676674]; doi: [https://dx.doi.org/10.1038/nature12223 10.1038/nature12223]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23676674 51].
 +
#Greening DW, Kapp EA, Ji H, Speed TP, Simpson RJ,  (2013) &quot;Colon tumour secretopeptidome: insights into endogenous proteolytic cleavage events in the colon tumour microenvironment.&quot; <i>Biochim Biophys Acta</i> <b>1834</b>(11):2396&ndash;407; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23684732 23684732]; doi: [https://dx.doi.org/10.1016/j.bbapap.2013.05.006 10.1016/j.bbapap.2013.05.006]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23684732 4].
 +
#Zhang L, Holmes IP, Hochgr&auml;fe F, Walker SR, Ali NA, Humphrey ES, Wu J, de Silva M, Kersten WJ, Connor T, Falk H, Allan L, Street IP, Bentley JD, Pilling PA, Monahan BJ, Peat TS, Daly RJ,  (2013) &quot;Characterization of the novel broad-spectrum kinase inhibitor CTx-0294885 as an affinity reagent for mass spectrometry-based kinome profiling.&quot; <i>J Proteome Res</i> <b>12</b>(7):3104&ndash;16; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23692254 23692254]; doi: [https://dx.doi.org/10.1021/pr3008495 10.1021/pr3008495]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23692254 106].
 +
#Courcelles M, Fr&eacute;min C, Voisin L, Lemieux S, Meloche S, Thibault P,  (2013) &quot;Phosphoproteome dynamics reveal novel ERK1/2 MAP kinase substrates with broad spectrum of functions.&quot; <i>Mol Syst Biol</i> <b>9</b>:669; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23712012 23712012]; doi: [https://dx.doi.org/10.1038/msb.2013.25 10.1038/msb.2013.25]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23712012 124].
 +
#Darville LN, Sokolowski BH,  (2013) &quot;In-depth proteomic analysis of mouse cochlear sensory epithelium by mass spectrometry.&quot; <i>J Proteome Res</i> <b>12</b>(8):3620&ndash;30; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23721421 23721421]; doi: [https://dx.doi.org/10.1021/pr4001338 10.1021/pr4001338]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23721421 160].
 +
#Villamor JG, Kaschani F, Colby T, Oeljeklaus J, Zhao D, Kaiser M, Patricelli MP, van der Hoorn RA,  (2013) &quot;Profiling protein kinases and other ATP binding proteins in Arabidopsis using Acyl-ATP probes.&quot; <i>Mol Cell Proteomics</i> <b>12</b>(9):2481&ndash;96; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23722185 23722185]; doi: [https://dx.doi.org/10.1074/mcp.M112.026278 10.1074/mcp.M112.026278]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23722185 30].
 +
#Liberski AR, Al-Noubi MN, Rahman ZH, Halabi NM, Dib SS, Al-Mismar R, Billing AM, Krishnankutty R, Ahmad FS, Raynaud CM, Rafii A, Engholm-Keller K, Graumann J,  (2013) &quot;Adaptation of a commonly used, chemically defined medium for human embryonic stem cells to stable isotope labeling with amino acids in cell culture.&quot; <i>J Proteome Res</i> <b>12</b>(7):3233&ndash;45; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23734825 23734825]; doi: [https://dx.doi.org/10.1021/pr400099j 10.1021/pr400099j]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23734825 13].
 +
#Casabona MG, Vandenbrouck Y, Attree I, Cout&eacute; Y,  (2013) &quot;Proteomic characterization of Pseudomonas aeruginosa PAO1 inner membrane.&quot; <i>Proteomics</i> <b>13</b>(16):2419&ndash;23; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23744604 23744604]; doi: [https://dx.doi.org/10.1002/pmic.201200565 10.1002/pmic.201200565]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23744604 6].
 +
#Ross BD, Rosin L, Thomae AW, Hiatt MA, Vermaak D, de la Cruz AF, Imhof A, Mellone BG, Malik HS,  (2013) &quot;Stepwise evolution of essential centromere function in a Drosophila neogene.&quot; <i>Science</i> <b>340</b>(6137):1211&ndash;4; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23744945 23744945]; doi: [https://dx.doi.org/10.1126/science.1234393 10.1126/science.1234393]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23744945 18].
 +
#Miura N, Shinohara M, Tatsukami Y, Sato Y, Morisaka H, Kuroda K, Ueda M,  (2013) &quot;Spatial reorganization of Saccharomyces cerevisiae enolase to alter carbon metabolism under hypoxia.&quot; <i>Eukaryot Cell</i> <b>12</b>(8):1106&ndash;19; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23748432 23748432]; doi: [https://dx.doi.org/10.1128/EC.00093-13 10.1128/EC.00093-13]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23748432 8].
 +
#Swaney DL, Beltrao P, Starita L, Guo A, Rush J, Fields S, Krogan NJ, Vill&eacute;n J,  (2013) &quot;Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation.&quot; <i>Nat Methods</i> <b>10</b>(7):676&ndash;82; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23749301 23749301]; doi: [https://dx.doi.org/10.1038/nmeth.2519 10.1038/nmeth.2519]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23749301 137].
 +
#Mertins P, Qiao JW, Patel J, Udeshi ND, Clauser KR, Mani DR, Burgess MW, Gillette MA, Jaffe JD, Carr SA,  (2013) &quot;Integrated proteomic analysis of post-translational modifications by serial enrichment.&quot; <i>Nat Methods</i> <b>10</b>(7):634&ndash;7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23749302 23749302]; doi: [https://dx.doi.org/10.1038/nmeth.2518 10.1038/nmeth.2518]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23749302 231].
 +
#Joshi P, Greco TM, Guise AJ, Luo Y, Yu F, Nesvizhskii AI, Cristea IM,  (2013) &quot;The functional interactome landscape of the human histone deacetylase family.&quot; <i>Mol Syst Biol</i> <b>9</b>:672; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23752268 23752268]; doi: [https://dx.doi.org/10.1038/msb.2013.26 10.1038/msb.2013.26]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23752268 75].
 +
#Wierer M, Verde G, Pisano P, Molina H, Font-Mateu J, Di Croce L, Beato M,  (2013) &quot;PLK1 signaling in breast cancer cells cooperates with estrogen receptor-dependent gene transcription.&quot; <i>Cell Rep</i> <b>3</b>(6):2021&ndash;32; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23770244 23770244]; doi: [https://dx.doi.org/10.1016/j.celrep.2013.05.024 10.1016/j.celrep.2013.05.024]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23770244 7].
 +
#Takahashi Y, Ebisu Y, Kinoshita T, Doi M, Okuma E, Murata Y, Shimazaki K,  (2013) &quot;bHLH transcription factors that facilitate K&#x207A; uptake during stomatal opening are repressed by abscisic acid through phosphorylation.&quot; <i>Sci Signal</i> <b>6</b>(280):ra48; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23779086 23779086]; doi: [https://dx.doi.org/10.1126/scisignal.2003760 10.1126/scisignal.2003760]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23779086 2].
 +
#Freund DM, Prenni JE, Curthoys NP,  (2013) &quot;Proteomic profiling of the mitochondrial inner membrane of rat renal proximal convoluted tubules.&quot; <i>Proteomics</i> <b>13</b>(16):2495&ndash;9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23780708 23780708]; doi: [https://dx.doi.org/10.1002/pmic.201200558 10.1002/pmic.201200558]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23780708 10].
 +
#Maier SK, Hahne H, Gholami AM, Balluff B, Meding S, Schoene C, Walch AK, Kuster B,  (2013) &quot;Comprehensive identification of proteins from MALDI imaging.&quot; <i>Mol Cell Proteomics</i> <b>12</b>(10):2901&ndash;10; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23782541 23782541]; doi: [https://dx.doi.org/10.1074/mcp.M113.027599 10.1074/mcp.M113.027599]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23782541 215].
 +
#Tanca A, Biosa G, Pagnozzi D, Addis MF, Uzzau S,  (2013) &quot;Comparison of detergent-based sample preparation workflows for LTQ-Orbitrap analysis of the Escherichia coli proteome.&quot; <i>Proteomics</i> <b>13</b>(17):2597&ndash;607; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23784971 23784971]; doi: [https://dx.doi.org/10.1002/pmic.201200478 10.1002/pmic.201200478]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23784971 131].
 +
#Hansen AM, Chaerkady R, Sharma J, D&iacute;az-Mej&iacute;a JJ, Tyagi N, Renuse S, Jacob HK, Pinto SM, Sahasrabuddhe NA, Kim MS, Delanghe B, Srinivasan N, Emili A, Kaper JB, Pandey A,  (2013) &quot;The Escherichia coli phosphotyrosine proteome relates to core pathways and virulence.&quot; <i>PLoS Pathog</i> <b>9</b>(6):e1003403; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23785281 23785281]; doi: [https://dx.doi.org/10.1371/journal.ppat.1003403 10.1371/journal.ppat.1003403]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23785281 24].
 +
#Prewitz MC, Seib FP, von Bonin M, Friedrichs J, Sti&szlig;el A, Niehage C, M&uuml;ller K, Anastassiadis K, Waskow C, Hoflack B, Bornh&auml;user M, Werner C,  (2013) &quot;Tightly anchored tissue-mimetic matrices as instructive stem cell microenvironments.&quot; <i>Nat Methods</i> <b>10</b>(8):788&ndash;94; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23793238 23793238]; doi: [https://dx.doi.org/10.1038/nmeth.2523 10.1038/nmeth.2523]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23793238 108].
 +
#Xiang F, Guo X, Chen W, Wang J, Zhou T, Huang F, Cao C, Chen X,  (2013) &quot;Proteomics analysis of human pericardial fluid.&quot; <i>Proteomics</i> <b>13</b>(17):2692&ndash;5; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23797974 23797974]; doi: [https://dx.doi.org/10.1002/pmic.201200317 10.1002/pmic.201200317]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23797974 59].
 +
#Kosanam H, Prassas I, Chrystoja CC, Soleas I, Chan A, Dimitromanolakis A, Blasutig IM, R&uuml;ckert F, Gruetzmann R, Pilarsky C, Maekawa M, Brand R, Diamandis EP,  (2013) &quot;Laminin, gamma 2 (LAMC2): a promising new putative pancreatic cancer biomarker identified by proteomic analysis of pancreatic adenocarcinoma tissues.&quot; <i>Mol Cell Proteomics</i> <b>12</b>(10):2820&ndash;32; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23798558 23798558]; doi: [https://dx.doi.org/10.1074/mcp.M112.023507 10.1074/mcp.M112.023507]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23798558 112].
 +
#Vialas V, Sun Z, Loureiro y Penha CV, Carrascal M, Abi&aacute;n J, Monteoliva L, Deutsch EW, Aebersold R, Moritz RL, Gil C,  (2014) &quot;A Candida albicans PeptideAtlas.&quot; <i>J Proteomics</i> <b>97</b>:62&ndash;8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23811049 23811049]; doi: [https://dx.doi.org/10.1016/j.jprot.2013.06.020 10.1016/j.jprot.2013.06.020]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23811049 148].
 +
#H&ouml;hner R, Barth J, Magneschi L, Jaeger D, Niehues A, Bald T, Grossman A, Fufezan C, Hippler M,  (2013) &quot;The metabolic status drives acclimation of iron deficiency responses in Chlamydomonas reinhardtii as revealed by proteomics based hierarchical clustering and reverse genetics.&quot; <i>Mol Cell Proteomics</i> <b>12</b>(10):2774&ndash;90; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23820728 23820728]; doi: [https://dx.doi.org/10.1074/mcp.M113.029991 10.1074/mcp.M113.029991]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23820728 669].
 +
#Stout GJ, Stigter EC, Essers PB, Mulder KW, Kolkman A, Snijders DS, van den Broek NJ, Betist MC, Korswagen HC, Macinnes AW, Brenkman AB,  (2013) &quot;Insulin/IGF-1-mediated longevity is marked by reduced protein metabolism.&quot; <i>Mol Syst Biol</i> <b>9</b>:679; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23820781 23820781]; doi: [https://dx.doi.org/10.1038/msb.2013.35 10.1038/msb.2013.35]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23820781 66].
 +
#Bottermann K, Reinartz M, Barsoum M, K&ouml;tter S, G&ouml;decke A,  (2013) &quot;Systematic Analysis Reveals Elongation Factor 2 and &alpha;-Enolase as Novel Interaction Partners of AKT2.&quot; <i>PLoS One</i> <b>8</b>(6):e66045; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23823123 23823123]; doi: [https://dx.doi.org/10.1371/journal.pone.0066045 10.1371/journal.pone.0066045]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23823123 4].
 +
#Rodr&iacute;guez-Pi&ntilde;eiro AM, Bergstr&ouml;m JH, Ermund A, Gustafsson JK, Sch&uuml;tte A, Johansson ME, Hansson GC,  (2013) &quot;Studies of mucus in mouse stomach, small intestine, and colon. II. Gastrointestinal mucus proteome reveals Muc2 and Muc5ac accompanied by a set of core proteins.&quot; <i>Am J Physiol Gastrointest Liver Physiol</i> <b>305</b>(5):G348&ndash;56; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23832517 23832517]; doi: [https://dx.doi.org/10.1152/ajpgi.00047.2013 10.1152/ajpgi.00047.2013]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23832517 72].
 +
#Konvalinka A, Zhou J, Dimitromanolakis A, Drabovich AP, Fang F, Gurley S, Coffman T, John R, Zhang SL, Diamandis EP, Scholey JW,  (2013) &quot;Determination of an angiotensin II-regulated proteome in primary human kidney cells by stable isotope labeling of amino acids in cell culture (SILAC).&quot; <i>J Biol Chem</i> <b>288</b>(34):24834&ndash;47; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23846697 23846697]; doi: [https://dx.doi.org/10.1074/jbc.M113.485326 10.1074/jbc.M113.485326]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23846697 204].
 +
#Zhou F, Lu Y, Ficarro SB, Adelmant G, Jiang W, Luckey CJ, Marto JA,  (2013) &quot;Genome-scale proteome quantification by DEEP SEQ mass spectrometry.&quot; <i>Nat Commun</i> <b>4</b>:2171; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23863870 23863870]; doi: [https://dx.doi.org/10.1038/ncomms3171 10.1038/ncomms3171]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23863870 60].
 +
#Johansson HJ, Sanchez BC, Mundt F, Forshed J, Kovacs A, Panizza E, Hultin-Rosenberg L, Lundgren B, Martens U, M&aacute;th&eacute; G, Yakhini Z, Helou K, Krawiec K, Kanter L, Hjerpe A, St&aring;l O, Linderholm BK, Lehti&ouml; J,  (2013) &quot;Retinoic acid receptor alpha is associated with tamoxifen resistance in breast cancer.&quot; <i>Nat Commun</i> <b>4</b>:2175; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23868472 23868472]; doi: [https://dx.doi.org/10.1038/ncomms3175 10.1038/ncomms3175]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23868472 144].
 +
#Prasad TS, Verma R, Kumar S, Nirujogi RS, Sathe GJ, Madugundu AK, Sharma J, Puttamallesh VN, Ganjiwale A, Myneedu VP, Chatterjee A, Pandey A, Harsha H, Narayana J,  (2013) &quot;Proteomic analysis of purified protein derivative of Mycobacterium tuberculosis.&quot; <i>Clin Proteomics</i> <b>10</b>(1):8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23870090 23870090]; doi: [https://dx.doi.org/10.1186/1559-0275-10-8 10.1186/1559-0275-10-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23870090 1].
 +
#Omasits U, Quebatte M, Stekhoven DJ, Fortes C, Roschitzki B, Robinson MD, Dehio C, Ahrens CH,  (2013) &quot;Directed shotgun proteomics guided by saturated RNA-seq identifies a complete expressed prokaryotic proteome.&quot; <i>Genome Res</i> <b>23</b>(11):1916&ndash;27; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23878158 23878158]; doi: [https://dx.doi.org/10.1101/gr.151035.112 10.1101/gr.151035.112]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23878158 26].
 +
#Xia L, Wang TD, Shen SM, Zhao M, Sun H, He Y, Xie L, Wu ZX, Han SF, Wang LS, Chen GQ,  (2013) &quot;Phosphoproteomics study on the activated PKC&delta;-induced cell death.&quot; <i>J Proteome Res</i> <b>12</b>(10):4280&ndash;301; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23879269 23879269]; doi: [https://dx.doi.org/10.1021/pr400089v 10.1021/pr400089v]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23879269 385].
 +
#Chen YY, Chambers MC, Li M, Ham AJ, Turner JL, Zhang B, Tabb DL,  (2013) &quot;IDPQuantify: combining precursor intensity with spectral counts for protein and peptide quantification.&quot; <i>J Proteome Res</i> <b>12</b>(9):4111&ndash;21; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23879310 23879310]; doi: [https://dx.doi.org/10.1021/pr400438q 10.1021/pr400438q]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23879310 23].
 +
#Chamr&aacute;d I, Rix U, Stukalov A, Gridling M, Parapatics K, M&uuml;ller AC, Altiok S, Colinge J, Superti-Furga G, Haura EB, Bennett KL,  (2013) &quot;A miniaturized chemical proteomic approach for target profiling of clinical kinase inhibitors in tumor biopsies.&quot; <i>J Proteome Res</i> <b>12</b>(9):4005&ndash;17; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23901793 23901793]; doi: [https://dx.doi.org/10.1021/pr400309p 10.1021/pr400309p]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23901793 56].
 +
#Oosterkamp MJ, Boeren S, Plugge CM, Schaap PJ, Stams AJ,  (2013) &quot;Metabolic response of Alicycliphilus denitrificans strain BC toward electron acceptor variation.&quot; <i>Proteomics</i> <b>13</b>(18-19):2886&ndash;94; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23907812 23907812]; doi: [https://dx.doi.org/10.1002/pmic.201200571 10.1002/pmic.201200571]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23907812 16].
 +
#Kwon SC, Yi H, Eichelbaum K, F&ouml;hr S, Fischer B, You KT, Castello A, Krijgsveld J, Hentze MW, Kim VN,  (2013) &quot;The RNA-binding protein repertoire of embryonic stem cells.&quot; <i>Nat Struct Mol Biol</i> <b>20</b>(9):1122&ndash;30; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23912277 23912277]; doi: [https://dx.doi.org/10.1038/nsmb.2638 10.1038/nsmb.2638]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23912277 36].
 +
#Gholami AM, Hahne H, Wu Z, Auer FJ, Meng C, Wilhelm M, Kuster B,  (2013) &quot;Global proteome analysis of the NCI-60 cell line panel.&quot; <i>Cell Rep</i> <b>4</b>(3):609&ndash;20; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23933261 23933261]; doi: [https://dx.doi.org/10.1016/j.celrep.2013.07.018 10.1016/j.celrep.2013.07.018]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23933261 899].
 +
#Krishnappa L, Dreisbach A, Otto A, Goosens VJ, Cranenburgh RM, Harwood CR, Becher D, van Dijl JM,  (2013) &quot;Extracytoplasmic proteases determining the cleavage and release of secreted proteins, lipoproteins, and membrane proteins in Bacillus subtilis.&quot; <i>J Proteome Res</i> <b>12</b>(9):4101&ndash;10; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23937099 23937099]; doi: [https://dx.doi.org/10.1021/pr400433h 10.1021/pr400433h]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23937099 112].
 +
#Han D, Moon S, Kim Y, Kim J, Jin J, Kim Y,  (2013) &quot;In-depth proteomic analysis of mouse microglia using a combination of FASP and StageTip-based, high pH, reversed-phase fractionation.&quot; <i>Proteomics</i> <b>13</b>(20):2984&ndash;8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23943505 23943505]; doi: [https://dx.doi.org/10.1002/pmic.201300091 10.1002/pmic.201300091]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23943505 36].
 +
#Edwards AV, Edwards GJ, Schw&auml;mmle V, Saxtorph H, Larsen MR,  (2014) &quot;Spatial and temporal effects in protein post-translational modification distributions in the developing mouse brain.&quot; <i>J Proteome Res</i> <b>13</b>(1):260&ndash;7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23947802 23947802]; doi: [https://dx.doi.org/10.1021/pr4002977 10.1021/pr4002977]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23947802 11].
 +
#Ulrich C, Quilici DR, Schlauch KA, Buxton IL,  (2013) &quot;The human uterine smooth muscle S-nitrosoproteome fingerprint in pregnancy, labor, and preterm labor.&quot; <i>Am J Physiol Cell Physiol</i> <b>305</b>(8):C803&ndash;16; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23948706 23948706]; doi: [https://dx.doi.org/10.1152/ajpcell.00198.2013 10.1152/ajpcell.00198.2013]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23948706 9].
 +
#Liu NQ, Dekker LJ, Stingl C, G&uuml;zel C, De Marchi T, Martens JW, Foekens JA, Luider TM, Umar A,  (2013) &quot;Quantitative proteomic analysis of microdissected breast cancer tissues: comparison of label-free and SILAC-based quantification with shotgun, directed, and targeted MS approaches.&quot; <i>J Proteome Res</i> <b>12</b>(10):4627&ndash;41; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23957277 23957277]; doi: [https://dx.doi.org/10.1021/pr4005794 10.1021/pr4005794]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23957277 57].
 +
#Hahne H, Pachl F, Ruprecht B, Maier SK, Klaeger S, Helm D, M&eacute;dard G, Wilm M, Lemeer S, Kuster B,  (2013) &quot;DMSO enhances electrospray response, boosting sensitivity of proteomic experiments.&quot; <i>Nat Methods</i> <b>10</b>(10):989&ndash;91; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23975139 23975139]; doi: [https://dx.doi.org/10.1038/nmeth.2610 10.1038/nmeth.2610]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23975139 64].
 +
#Lewandowska D, ten Have S, Hodge K, Tillemans V, Lamond AI, Brown JW,  (2013) &quot;Plant SILAC: stable-isotope labelling with amino acids of arabidopsis seedlings for quantitative proteomics.&quot; <i>PLoS One</i> <b>8</b>(8):e72207; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23977254 23977254]; doi: [https://dx.doi.org/10.1371/journal.pone.0072207 10.1371/journal.pone.0072207]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23977254 50].
 +
#Zanivan S, Maione F, Hein MY, Hern&aacute;ndez-Fernaud JR, Ostasiewicz P, Giraudo E, Mann M,  (2013) &quot;SILAC-based proteomics of human primary endothelial cell morphogenesis unveils tumor angiogenic markers.&quot; <i>Mol Cell Proteomics</i> <b>12</b>(12):3599&ndash;611; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23979707 23979707]; doi: [https://dx.doi.org/10.1074/mcp.M113.031344 10.1074/mcp.M113.031344]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23979707 452].
 +
#Lichtman JS, Marcobal A, Sonnenburg JL, Elias JE,  (2013) &quot;Host-centric proteomics of stool: a novel strategy focused on intestinal responses to the gut microbiota.&quot; <i>Mol Cell Proteomics</i> <b>12</b>(11):3310&ndash;8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23982161 23982161]; doi: [https://dx.doi.org/10.1074/mcp.M113.029967 10.1074/mcp.M113.029967]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23982161 289].
 +
#Ueda K, Tatsuguchi A, Saichi N, Toyama A, Tamura K, Furihata M, Takata R, Akamatsu S, Igarashi M, Nakayama M, Sato TA, Ogawa O, Fujioka T, Shuin T, Nakamura Y, Nakagawa H,  (2013) &quot;Plasma low-molecular-weight proteome profiling identified neuropeptide-Y as a prostate cancer biomarker polypeptide.&quot; <i>J Proteome Res</i> <b>12</b>(10):4497&ndash;506; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23991666 23991666]; doi: [https://dx.doi.org/10.1021/pr400547s 10.1021/pr400547s]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/23991666 116].
 +
#Depuydt G, Xie F, Petyuk VA, Shanmugam N, Smolders A, Dhondt I, Brewer HM, Camp DG 2nd, Smith RD, Braeckman BP,  (2013) &quot;Reduced insulin/insulin-like growth factor-1 signaling and dietary restriction inhibit translation but preserve muscle mass in Caenorhabditis elegans.&quot; <i>Mol Cell Proteomics</i> <b>12</b>(12):3624&ndash;39; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24002365 24002365]; doi: [https://dx.doi.org/10.1074/mcp.M113.027383 10.1074/mcp.M113.027383]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24002365 64].
 +
#Jones KA, Kim PD, Patel BB, Kelsen SG, Braverman A, Swinton DJ, Gafken PR, Jones LA, Lane WS, Neveu JM, Leung HC, Shaffer SA, Leszyk JD, Stanley BA, Fox TE, Stanley A, Hall MJ, Hampel H, South CD, de la Chapelle A, Burt RW, Jones DA, Kopelovich L, Yeung AT,  (2013) &quot;Immunodepletion plasma proteomics by tripleTOF 5600 and Orbitrap elite/LTQ-Orbitrap Velos/Q exactive mass spectrometers.&quot; <i>J Proteome Res</i> <b>12</b>(10):4351&ndash;65; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24004147 24004147]; doi: [https://dx.doi.org/10.1021/pr400307u 10.1021/pr400307u]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24004147 149].
 +
#Salmon CR, Tomazela DM, Ruiz KG, Foster BL, Paes Leme AF, Sallum EA, Somerman MJ, Nociti FH Jr,  (2013) &quot;Proteomic analysis of human dental cementum and alveolar bone.&quot; <i>J Proteomics</i> <b>91</b>:544&ndash;55; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24007660 24007660]; doi: [https://dx.doi.org/10.1016/j.jprot.2013.08.016 10.1016/j.jprot.2013.08.016]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24007660 42].
 +
#Mart&iacute;nez-F&aacute;bregas J, D&iacute;az-Moreno I, Gonz&aacute;lez-Arzola K, Janocha S, Navarro JA, Herv&aacute;s M, Bernhardt R, D&iacute;az-Quintana A, De la Rosa M&Aacute;,  (2013) &quot;New Arabidopsis thaliana cytochrome c partners: a look into the elusive role of cytochrome c in programmed cell death in plants.&quot; <i>Mol Cell Proteomics</i> <b>12</b>(12):3666&ndash;76; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24019145 24019145]; doi: [https://dx.doi.org/10.1074/mcp.M113.030692 10.1074/mcp.M113.030692]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24019145 8].
 +
#Bai B, Hales CM, Chen PC, Gozal Y, Dammer EB, Fritz JJ, Wang X, Xia Q, Duong DM, Street C, Cantero G, Cheng D, Jones DR, Wu Z, Li Y, Diner I, Heilman CJ, Rees HD, Wu H, Lin L, Szulwach KE, Gearing M, Mufson EJ, Bennett DA, Montine TJ, Seyfried NT, Wingo TS, Sun YE, Jin P, Hanfelt J, Willcock DM, Levey A, Lah JJ, Peng J,  (2013) &quot;U1 small nuclear ribonucleoprotein complex and RNA splicing alterations in Alzheimer&#39;s disease.&quot; <i>Proc Natl Acad Sci U S A</i> <b>110</b>(41):16562&ndash;7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24023061 24023061]; doi: [https://dx.doi.org/10.1073/pnas.1310249110 10.1073/pnas.1310249110]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24023061 80].
 +
#Kirkwood KJ, Ahmad Y, Larance M, Lamond AI,  (2013) &quot;Characterization of native protein complexes and protein isoform variation using size-fractionation-based quantitative proteomics.&quot; <i>Mol Cell Proteomics</i> <b>12</b>(12):3851&ndash;73; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24043423 24043423]; doi: [https://dx.doi.org/10.1074/mcp.M113.032367 10.1074/mcp.M113.032367]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24043423 120].
 +
#Miranda HV, Antelmann H, Hepowit N, Chavarria NE, Krause DJ, Pritz JR, B&auml;sell K, Becher D, Humbard MA, Brocchieri L, Maupin-Furlow JA,  (2014) &quot;Archaeal ubiquitin-like SAMP3 is isopeptide-linked to proteins via a UbaA-dependent mechanism.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(1):220&ndash;39; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24097257 24097257]; doi: [https://dx.doi.org/10.1074/mcp.M113.029652 10.1074/mcp.M113.029652]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24097257 35].
 +
#Hartmann EM, Armengaud J,  (2014) &quot;Shotgun proteomics suggests involvement of additional enzymes in dioxin degradation by Sphingomonas wittichii RW1.&quot; <i>Environ Microbiol</i> <b>16</b>(1):162&ndash;76; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24118890 24118890]; doi: [https://dx.doi.org/10.1111/1462-2920.12264 10.1111/1462-2920.12264]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24118890 84].
 +
#Puttamallesh VN, Sreenivasamurthy SK, Singh PK, Harsha HC, Ganjiwale A, Broor S, Pandey A, Narayana J, Prasad TS,  (2013) &quot;Proteomic profiling of serum samples from chikungunya-infected patients provides insights into host response.&quot; <i>Clin Proteomics</i> <b>10</b>(1):14; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24124767 24124767]; doi: [https://dx.doi.org/10.1186/1559-0275-10-14 10.1186/1559-0275-10-14]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24124767 23].
 +
#Wang W, Li X, Huang J, Feng L, Dolinta KG, Chen J,  (2014) &quot;Defining the protein-protein interaction network of the human hippo pathway.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(1):119&ndash;31; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24126142 24126142]; doi: [https://dx.doi.org/10.1074/mcp.M113.030049 10.1074/mcp.M113.030049]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24126142 66].
 +
#Khan Z, Ford MJ, Cusanovich DA, Mitrano A, Pritchard JK, Gilad Y,  (2013) &quot;Primate transcript and protein expression levels evolve under compensatory selection pressures.&quot; <i>Science</i> <b>342</b>(6162):1100&ndash;4; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24136357 24136357]; doi: [https://dx.doi.org/10.1126/science.1242379 10.1126/science.1242379]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24136357 173].
 +
#Segura V, Medina-Aunon JA, Mora MI, Mart&iacute;nez-Bartolom&eacute; S, Abian J, Aloria K, Ant&uacute;nez O, Arizmendi JM, Azkargorta M, Barcel&oacute;-Batllori S, Beaskoetxea J, Bech-Serra JJ, Blanco F, Monteiro MB, C&aacute;ceres D, Canals F, Carrascal M, Casal JI, Clemente F, Colom&eacute; N, Dasilva N, D&iacute;az P, Elortza F, Fern&aacute;ndez-Puente P, Fuentes M, Gallardo O, Gharbi SI, Gil C, Gonz&aacute;lez-Tejedo C, Hern&aacute;ez ML, Lombard&iacute;a M, Lopez-Lucendo M, Marcilla M, Mato JM, Mendes M, Oliveira E, Orera I, Pascual-Montano A, Prieto G, Ruiz-Romero C, S&aacute;nchez del Pino MM, Tabas-Madrid D, Valero ML, Vialas V, Villanueva J, Albar JP, Corrales FJ,  (2014) &quot;Surfing transcriptomic landscapes. A step beyond the annotation of chromosome 16 proteome.&quot; <i>J Proteome Res</i> <b>13</b>(1):158&ndash;72; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24138474 24138474]; doi: [https://dx.doi.org/10.1021/pr400721r 10.1021/pr400721r]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24138474 106].
 +
#Hebert AS, Richards AL, Bailey DJ, Ulbrich A, Coughlin EE, Westphall MS, Coon JJ,  (2014) &quot;The one hour yeast proteome.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(1):339&ndash;47; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24143002 24143002]; doi: [https://dx.doi.org/10.1074/mcp.M113.034769 10.1074/mcp.M113.034769]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24143002 7].
 +
#Gorbachev AY, Fisunov GY, Izraelson M, Evsyutina DV, Mazin PV, Alexeev DG, Pobeguts OV, Gorshkova TN, Kovalchuk SI, Kamashev DE, Govorun VM,  (2013) &quot;DNA repair in Mycoplasma gallisepticum.&quot; <i>BMC Genomics</i> <b>14</b>:726; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24148612 24148612]; doi: [https://dx.doi.org/10.1186/1471-2164-14-726 10.1186/1471-2164-14-726]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24148612 1].
 +
#McKnight H, Kelsey WP, Hooper DA, Hart TC, Mariotti A,  (2014) &quot;Proteomic analyses of human gingival and periodontal ligament fibroblasts.&quot; <i>J Periodontol</i> <b>85</b>(6):810&ndash;8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24171499 24171499]; doi: [https://dx.doi.org/10.1902/jop.2013.130161 10.1902/jop.2013.130161]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24171499 8].
 +
#Deeb SJ, Cox J, Schmidt-Supprian M, Mann M,  (2014) &quot;N-linked glycosylation enrichment for in-depth cell surface proteomics of diffuse large B-cell lymphoma subtypes.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(1):240&ndash;51; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24190977 24190977]; doi: [https://dx.doi.org/10.1074/mcp.M113.033977 10.1074/mcp.M113.033977]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24190977 40].
 +
#English JA, Harauma A, F&ouml;cking M, Wynne K, Scaife C, Cagney G, Moriguchi T, Cotter DR,  (2013) &quot;Omega-3 fatty acid deficiency disrupts endocytosis, neuritogenesis, and mitochondrial protein pathways in the mouse hippocampus.&quot; <i>Front Genet</i> <b>4</b>:208; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24194745 24194745]; doi: [https://dx.doi.org/10.3389/fgene.2013.00208 10.3389/fgene.2013.00208]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24194745 48].
 +
#Fujita T, Asano Y, Ohtsuka J, Takada Y, Saito K, Ohki R, Fujii H,  (2013) &quot;Identification of telomere-associated molecules by engineered DNA-binding molecule-mediated chromatin immunoprecipitation (enChIP).&quot; <i>Sci Rep</i> <b>3</b>:3171; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24201379 24201379]; doi: [https://dx.doi.org/10.1038/srep03171 10.1038/srep03171]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24201379 30].
 +
#Salek M, McGowan S, Trudgian DC, Dushek O, de Wet B, Efstathiou G, Acuto O,  (2013) &quot;Quantitative phosphoproteome analysis unveils LAT as a modulator of CD3&zeta; and ZAP-70 tyrosine phosphorylation.&quot; <i>PLoS One</i> <b>8</b>(10):e77423; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24204825 24204825]; doi: [https://dx.doi.org/10.1371/journal.pone.0077423 10.1371/journal.pone.0077423]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24204825 162].
 +
#Sandberg A, Branca RM, Lehti&ouml; J, Forshed J,  (2014) &quot;Quantitative accuracy in mass spectrometry based proteomics of complex samples: the impact of labeling and precursor interference.&quot; <i>J Proteomics</i> <b>96</b>:133&ndash;44; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24211767 24211767]; doi: [https://dx.doi.org/10.1016/j.jprot.2013.10.035 10.1016/j.jprot.2013.10.035]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24211767 27].
 +
#Caruthers NJ, Stemmer PM, Shin N, Dombkowski A, Caruso JA, Gill R, Rosenspire A,  (2014) &quot;Mercury alters B-cell protein phosphorylation profiles.&quot; <i>J Proteome Res</i> <b>13</b>(2):496&ndash;505; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24224561 24224561]; doi: [https://dx.doi.org/10.1021/pr400657k 10.1021/pr400657k]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24224561 21].
 +
#Sancak Y, Markhard AL, Kitami T, Kov&aacute;cs-Bogd&aacute;n E, Kamer KJ, Udeshi ND, Carr SA, Chaudhuri D, Clapham DE, Li AA, Calvo SE, Goldberger O, Mootha VK,  (2013) &quot;EMRE is an essential component of the mitochondrial calcium uniporter complex.&quot; <i>Science</i> <b>342</b>(6164):1379&ndash;82; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24231807 24231807]; doi: [https://dx.doi.org/10.1126/science.1242993 10.1126/science.1242993]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24231807 7].
 +
#Thomae AW, Schade GO, Padeken J, Borath M, Vetter I, Kremmer E, Heun P, Imhof A,  (2013) &quot;A pair of centromeric proteins mediates reproductive isolation in Drosophila species.&quot; <i>Dev Cell</i> <b>27</b>(4):412&ndash;24; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24239514 24239514]; doi: [https://dx.doi.org/10.1016/j.devcel.2013.10.001 10.1016/j.devcel.2013.10.001]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24239514 51].
 +
#Branca RM, Orre LM, Johansson HJ, Granholm V, Huss M, P&eacute;rez-Bercoff &Aring;, Forshed J, K&auml;ll L, Lehti&ouml; J,  (2014) &quot;HiRIEF LC-MS enables deep proteome coverage and unbiased proteogenomics.&quot; <i>Nat Methods</i> <b>11</b>(1):59&ndash;62; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24240322 24240322]; doi: [https://dx.doi.org/10.1038/nmeth.2732 10.1038/nmeth.2732]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24240322 2592].
 +
#Schaab C, Oppermann FS, Klammer M, Pfeifer H, Tebbe A, Oellerich T, Krauter J, Levis M, Perl AE, Daub H, Steffen B, Godl K, Serve H,  (2014) &quot;Global phosphoproteome analysis of human bone marrow reveals predictive phosphorylation markers for the treatment of acute myeloid leukemia with quizartinib.&quot; <i>Leukemia</i> <b>28</b>(3):716&ndash;9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24247654 24247654]; doi: [https://dx.doi.org/10.1038/leu.2013.347 10.1038/leu.2013.347]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24247654 22].
 +
#Drake JM, Graham NA, Lee JK, Stoyanova T, Faltermeier CM, Sud S, Titz B, Huang J, Pienta KJ, Graeber TG, Witte ON,  (2013) &quot;Metastatic castration-resistant prostate cancer reveals intrapatient similarity and interpatient heterogeneity of therapeutic kinase targets.&quot; <i>Proc Natl Acad Sci U S A</i> <b>110</b>(49):E4762&ndash;9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24248375 24248375]; doi: [https://dx.doi.org/10.1073/pnas.1319948110 10.1073/pnas.1319948110]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24248375 87].
 +
#Chang C, Li L, Zhang C, Wu S, Guo K, Zi J, Chen Z, Jiang J, Ma J, Yu Q, Fan F, Qin P, Han M, Su N, Chen T, Wang K, Zhai L, Zhang T, Ying W, Xu Z, Zhang Y, Liu Y, Liu X, Zhong F, Shen H, Wang Q, Hou G, Zhao H, Li G, Liu S, Gu W, Wang G, Wang T, Zhang G, Qian X, Li N, He QY, Lin L, Yang P, Zhu Y, He F, Xu P,  (2014) &quot;Systematic analyses of the transcriptome, translatome, and proteome provide a global view and potential strategy for the C-HPP.&quot; <i>J Proteome Res</i> <b>13</b>(1):38&ndash;49; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24256510 24256510]; doi: [https://dx.doi.org/10.1021/pr4009018 10.1021/pr4009018]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24256510 216].
 +
#Dagley LF, White CA, Liao Y, Shi W, Smyth GK, Orian JM, Emili A, Purcell AW,  (2014) &quot;Quantitative proteomic profiling reveals novel region-specific markers in the adult mouse brain.&quot; <i>Proteomics</i> <b>14</b>(2-3):241&ndash;61; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24259518 24259518]; doi: [https://dx.doi.org/10.1002/pmic.201300196 10.1002/pmic.201300196]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24259518 56].
 +
#Xing X, Zhang C, Li N, Zhai L, Zhu Y, Yang X, Xu P,  (2014) &quot;Qualitative and quantitative analysis of the adult Drosophila melanogaster proteome.&quot; <i>Proteomics</i> <b>14</b>(2-3):286&ndash;90; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24259522 24259522]; doi: [https://dx.doi.org/10.1002/pmic.201300121 10.1002/pmic.201300121]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24259522 125].
 +
#Lichti CF, Liu H, Shavkunov AS, Mostovenko E, Sulman EP, Ezhilarasan R, Wang Q, Kroes RA, Moskal JC, Feny&ouml; D, Oksuz BA, Conrad CA, Lang FF, Berven FS, V&eacute;gv&aacute;ri A, Rezeli M, Marko-Varga G, Hober S, Nilsson CL,  (2014) &quot;Integrated chromosome 19 transcriptomic and proteomic data sets derived from glioma cancer stem-cell lines.&quot; <i>J Proteome Res</i> <b>13</b>(1):191&ndash;9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24266786 24266786]; doi: [https://dx.doi.org/10.1021/pr400786s 10.1021/pr400786s]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24266786 66].
 +
#Grolimund L, Aeby E, Hamelin R, Armand F, Chiappe D, Moniatte M, Lingner J,  (2013) &quot;A quantitative telomeric chromatin isolation protocol identifies different telomeric states.&quot; <i>Nat Commun</i> <b>4</b>:2848; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24270157 24270157]; doi: [https://dx.doi.org/10.1038/ncomms3848 10.1038/ncomms3848]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24270157 177].
 +
#Martins-de-Souza D, Carvalho PC, Schmitt A, Junqueira M, Nogueira FC, Turck CW, Domont GB,  (2014) &quot;Deciphering the human brain proteome: characterization of the anterior temporal lobe and corpus callosum as part of the Chromosome 15-centric Human Proteome Project.&quot; <i>J Proteome Res</i> <b>13</b>(1):147&ndash;57; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24274931 24274931]; doi: [https://dx.doi.org/10.1021/pr4009157 10.1021/pr4009157]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24274931 80].
 +
#Schlage P, Egli FE, Nanni P, Wang LW, Kizhakkedathu JN, Apte SS, auf dem Keller U,  (2014) &quot;Time-resolved analysis of the matrix metalloproteinase 10 substrate degradome.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(2):580&ndash;93; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24281761 24281761]; doi: [https://dx.doi.org/10.1074/mcp.M113.035139 10.1074/mcp.M113.035139]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24281761 34].
 +
#Aquino PF, Lima DB, de Saldanha da Gama Fischer J, Melani RD, Nogueira FC, Chalub SR, Soares ER, Barbosa VC, Domont GB, Carvalho PC,  (2014) &quot;Exploring the proteomic landscape of a gastric cancer biopsy with the shotgun imaging analyzer.&quot; <i>J Proteome Res</i> <b>13</b>(1):314&ndash;20; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24283986 24283986]; doi: [https://dx.doi.org/10.1021/pr400919k 10.1021/pr400919k]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24283986 152].
 +
#Nensa FM, Neumann MH, Schr&ouml;tter A, Przyborski A, Mastalski T, Susdalzew S, Loo&beta;e C, Helling S, El Magraoui F, Erdmann R, Meyer HE, Uszkoreit J, Eisenacher M, Suh J, Gu&eacute;nette SY, R&ouml;hner N, K&ouml;gel D, Theiss C, Marcus K, M&uuml;ller T,  (2014) &quot;Amyloid beta a4 precursor protein-binding family B member 1 (FE65) interactomics revealed synaptic vesicle glycoprotein 2A (SV2A) and sarcoplasmic/endoplasmic reticulum calcium ATPase 2 (SERCA2) as new binding proteins in the human brain.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(2):475&ndash;88; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24284412 24284412]; doi: [https://dx.doi.org/10.1074/mcp.M113.029280 10.1074/mcp.M113.029280]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24284412 60].
 +
#J&uuml;schke C, Dohnal I, Pichler P, Harzer H, Swart R, Ammerer G, Mechtler K, Knoblich JA,  (2013) &quot;Transcriptome and proteome quantification of a tumor model provides novel insights into post-transcriptional gene regulation.&quot; <i>Genome Biol</i> <b>14</b>(11):r133; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24289286 24289286]; doi: [https://dx.doi.org/10.1186/gb-2013-14-11-r133 10.1186/gb-2013-14-11-r133]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24289286 203].
 +
#Wang C, Weerapana E, Blewett MM, Cravatt BF,  (2014) &quot;A chemoproteomic platform to quantitatively map targets of lipid-derived electrophiles.&quot; <i>Nat Methods</i> <b>11</b>(1):79&ndash;85; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24292485 24292485]; doi: [https://dx.doi.org/10.1038/nmeth.2759 10.1038/nmeth.2759]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24292485 180].
 +
#Kr&ouml;nke J, Udeshi ND, Narla A, Grauman P, Hurst SN, McConkey M, Svinkina T, Heckl D, Comer E, Li X, Ciarlo C, Hartman E, Munshi N, Schenone M, Schreiber SL, Carr SA, Ebert BL,  (2014) &quot;Lenalidomide causes selective degradation of IKZF1 and IKZF3 in multiple myeloma cells.&quot; <i>Science</i> <b>343</b>(6168):301&ndash;5; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24292625 24292625]; doi: [https://dx.doi.org/10.1126/science.1244851 10.1126/science.1244851]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24292625 90].
 +
#Poulsen ET, Runager K, Ris&oslash;r MW, Dyrlund TF, Scavenius C, Karring H, Praetorius J, Vorum H, Otzen DE, Klintworth GK, Enghild JJ,  (2014) &quot;Comparison of two phenotypically distinct lattice corneal dystrophies caused by mutations in the transforming growth factor beta induced (TGFBI) gene.&quot; <i>Proteomics Clin Appl</i> <b>8</b>(3-4):168&ndash;77; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24302499 24302499]; doi: [https://dx.doi.org/10.1002/prca.201300058 10.1002/prca.201300058]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24302499 10].
 +
#Macleod AK, Zang T, Riches Z, Henderson CJ, Wolf CR, Huang JT,  (2014) &quot;A targeted in vivo SILAC approach for quantification of drug metabolism enzymes: regulation by the constitutive androstane receptor.&quot; <i>J Proteome Res</i> <b>13</b>(2):866&ndash;74; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24303842 24303842]; doi: [https://dx.doi.org/10.1021/pr400897t 10.1021/pr400897t]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24303842 44].
 +
#Aguilera L, Toloza L, Gim&eacute;nez R, Odena A, Oliveira E, Aguilar J, Badia J, Baldom&agrave; L,  (2014) &quot;Proteomic analysis of outer membrane vesicles from the probiotic strain Escherichia coli Nissle 1917.&quot; <i>Proteomics</i> <b>14</b>(2-3):222&ndash;9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24307187 24307187]; doi: [https://dx.doi.org/10.1002/pmic.201300328 10.1002/pmic.201300328]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24307187 44].
 +
#de la Tour CB, Passot FM, Toueille M, Mirabella B, Gu&eacute;rin P, Blanchard L, Servant P, de Groot A, Sommer S, Armengaud J,  (2013) &quot;Comparative proteomics reveals key proteins recruited at the nucleoid of Deinococcus after irradiation-induced DNA damage.&quot; <i>Proteomics</i> <b>13</b>(23-24):3457&ndash;69; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24307635 24307635]; doi: [https://dx.doi.org/10.1002/pmic.201300249 10.1002/pmic.201300249]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24307635 24].
 +
#Carlson SM, Moore KE, Green EM, Mart&iacute;n GM, Gozani O,  (2014) &quot;Proteome-wide enrichment of proteins modified by lysine methylation.&quot; <i>Nat Protoc</i> <b>9</b>(1):37&ndash;50; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24309976 24309976]; doi: [https://dx.doi.org/10.1038/nprot.2013.164 10.1038/nprot.2013.164]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24309976 8].
 +
#Fierro-Monti I, Echeverria P, Racle J, Hernandez C, Picard D, Quadroni M,  (2013) &quot;Dynamic impacts of the inhibition of the molecular chaperone Hsp90 on the T-cell proteome have implications for anti-cancer therapy.&quot; <i>PLoS One</i> <b>8</b>(11):e80425; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24312219 24312219]; doi: [https://dx.doi.org/10.1371/journal.pone.0080425 10.1371/journal.pone.0080425]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24312219 293].
 +
#Bland C, Bellanger L, Armengaud J,  (2014) &quot;Magnetic immunoaffinity enrichment for selective capture and MS/MS analysis of N-terminal-TMPP-labeled peptides.&quot; <i>J Proteome Res</i> <b>13</b>(2):668&ndash;80; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24313271 24313271]; doi: [https://dx.doi.org/10.1021/pr400774z 10.1021/pr400774z]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24313271 9].
 +
#Tsai CF, Hsu CC, Hung JN, Wang YT, Choong WK, Zeng MY, Lin PY, Hong RW, Sung TY, Chen YJ,  (2014) &quot;Sequential phosphoproteomic enrichment through complementary metal-directed immobilized metal ion affinity chromatography.&quot; <i>Anal Chem</i> <b>86</b>(1):685&ndash;93; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24313913 24313913]; doi: [https://dx.doi.org/10.1021/ac4031175 10.1021/ac4031175]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24313913 27].
 +
#Kennedy JJ, Abbatiello SE, Kim K, Yan P, Whiteaker JR, Lin C, Kim JS, Zhang Y, Wang X, Ivey RG, Zhao L, Min H, Lee Y, Yu MH, Yang EG, Lee C, Wang P, Rodriguez H, Kim Y, Carr SA, Paulovich AG,  (2014) &quot;Demonstrating the feasibility of large-scale development of standardized assays to quantify human proteins.&quot; <i>Nat Methods</i> <b>11</b>(2):149&ndash;55; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24317253 24317253]; doi: [https://dx.doi.org/10.1038/nmeth.2763 10.1038/nmeth.2763]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24317253 221].
 +
#Kao L, Wang YT, Chen YC, Tseng SF, Jhang JC, Chen YJ, Teng SC,  (2014) &quot;Global analysis of cdc14 dephosphorylation sites reveals essential regulatory role in mitosis and cytokinesis.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(2):594&ndash;605; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24319056 24319056]; doi: [https://dx.doi.org/10.1074/mcp.M113.032680 10.1074/mcp.M113.032680]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24319056 9].
 +
#Beck F, Geiger J, Gambaryan S, Veit J, Vaudel M, Nollau P, Kohlbacher O, Martens L, Walter U, Sickmann A, Zahedi RP,  (2014) &quot;Time-resolved characterization of cAMP/PKA-dependent signaling reveals that platelet inhibition is a concerted process involving multiple signaling pathways.&quot; <i>Blood</i> <b>123</b>(5):e1&ndash;e10; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24324209 24324209]; doi: [https://dx.doi.org/10.1182/blood-2013-07-512384 10.1182/blood-2013-07-512384]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24324209 19].
 +
#Lv DW, Subburaj S, Cao M, Yan X, Li X, Appels R, Sun DF, Ma W, Yan YM,  (2014) &quot;Proteome and phosphoproteome characterization reveals new response and defense mechanisms of Brachypodium distachyon leaves under salt stress.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(2):632&ndash;52; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24335353 24335353]; doi: [https://dx.doi.org/10.1074/mcp.M113.030171 10.1074/mcp.M113.030171]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24335353 87].
 +
#Hauri S, Wepf A, van Drogen A, Varjosalo M, Tapon N, Aebersold R, Gstaiger M,  (2013) &quot;Interaction proteome of human Hippo signaling: modular control of the co-activator YAP1.&quot; <i>Mol Syst Biol</i> <b>9</b>:713; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24366813 24366813]; doi: [https://dx.doi.org/10.1002/msb.201304750 10.1002/msb.201304750]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24366813 96].
 +
#Hoffmann C, Finsel I, Otto A, Pfaffinger G, Rothmeier E, Hecker M, Becher D, Hilbi H,  (2014) &quot;Functional analysis of novel Rab GTPases identified in the proteome of purified Legionella-containing vacuoles from macrophages.&quot; <i>Cell Microbiol</i> <b>16</b>(7):1034&ndash;52; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24373249 24373249]; doi: [https://dx.doi.org/10.1111/cmi.12256 10.1111/cmi.12256]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24373249 120].
 +
#Robles MS, Cox J, Mann M,  (2014) &quot;In-vivo quantitative proteomics reveals a key contribution of post-transcriptional mechanisms to the circadian regulation of liver metabolism.&quot; <i>PLoS Genet</i> <b>10</b>(1):e1004047; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24391516 24391516]; doi: [https://dx.doi.org/10.1371/journal.pgen.1004047 10.1371/journal.pgen.1004047]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24391516 282].
 +
#Faso C, Bischof S, Hehl AB,  (2013) &quot;The proteome landscape of Giardia lamblia encystation.&quot; <i>PLoS One</i> <b>8</b>(12):e83207; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24391747 24391747]; doi: [https://dx.doi.org/10.1371/journal.pone.0083207 10.1371/journal.pone.0083207]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24391747 125].
 +
#Forterre A, Jalabert A, Berger E, Baudet M, Chikh K, Errazuriz E, De Larichaudy J, Chanon S, Weiss-Gayet M, Hesse AM, Record M, Geloen A, Lefai E, Vidal H, Cout&eacute; Y, Rome S,  (2014) &quot;Proteomic analysis of C2C12 myoblast and myotube exosome-like vesicles: a new paradigm for myoblast-myotube cross talk?&quot; <i>PLoS One</i> <b>9</b>(1):e84153; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24392111 24392111]; doi: [https://dx.doi.org/10.1371/journal.pone.0084153 10.1371/journal.pone.0084153]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24392111 6].
 +
#Eichelbaum K, Krijgsveld J,  (2014) &quot;Rapid temporal dynamics of transcription, protein synthesis, and secretion during macrophage activation.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(3):792&ndash;810; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24396086 24396086]; doi: [https://dx.doi.org/10.1074/mcp.M113.030916 10.1074/mcp.M113.030916]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24396086 48].
 +
#Liu NQ, Stingl C, Look MP, Smid M, Braakman RB, De Marchi T, Sieuwerts AM, Span PN, Sweep FC, Linderholm BK, Mangia A, Paradiso A, Dirix LY, Van Laere SJ, Luider TM, Martens JW, Foekens JA, Umar A,  (2014) &quot;Comparative proteome analysis revealing an 11-protein signature for aggressive triple-negative breast cancer.&quot; <i>J Natl Cancer Inst</i> <b>106</b>(2):djt376; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24399849 24399849]; doi: [https://dx.doi.org/10.1093/jnci/djt376 10.1093/jnci/djt376]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24399849 126].
 +
#Van Damme P, St&oslash;ve SI, Glomnes N, Gevaert K, Arnesen T,  (2014) &quot;A Saccharomyces cerevisiae model reveals in vivo functional impairment of the Ogden syndrome N-terminal acetyltransferase NAA10 Ser37Pro mutant.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(8):2031&ndash;41; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24408909 24408909]; doi: [https://dx.doi.org/10.1074/mcp.M113.035402 10.1074/mcp.M113.035402]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24408909 192].
 +
#Sinha A, Ignatchenko V, Ignatchenko A, Mejia-Guerrero S, Kislinger T,  (2014) &quot;In-depth proteomic analyses of ovarian cancer cell line exosomes reveals differential enrichment of functional categories compared to the NCI 60 proteome.&quot; <i>Biochem Biophys Res Commun</i> <b>445</b>(4):694&ndash;701; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24434149 24434149]; doi: [https://dx.doi.org/10.1016/j.bbrc.2013.12.070 10.1016/j.bbrc.2013.12.070]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24434149 14].
 +
#Lennon R, Byron A, Humphries JD, Randles MJ, Carisey A, Murphy S, Knight D, Brenchley PE, Zent R, Humphries MJ,  (2014) &quot;Global analysis reveals the complexity of the human glomerular extracellular matrix.&quot; <i>J Am Soc Nephrol</i> <b>25</b>(5):939&ndash;51; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24436468 24436468]; doi: [https://dx.doi.org/10.1681/ASN.2013030233 10.1681/ASN.2013030233]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24436468 89].
 +
#Byron A, Randles MJ, Humphries JD, Mironov A, Hamidi H, Harris S, Mathieson PW, Saleem MA, Satchell SC, Zent R, Humphries MJ, Lennon R,  (2014) &quot;Glomerular cell cross-talk influences composition and assembly of extracellular matrix.&quot; <i>J Am Soc Nephrol</i> <b>25</b>(5):953&ndash;66; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24436469 24436469]; doi: [https://dx.doi.org/10.1681/ASN.2013070795 10.1681/ASN.2013070795]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24436469 180].
 +
#Licker V, Turck N, K&ouml;vari E, Burkhardt K, C&ocirc;te M, Surini-Demiri M, Lobrinus JA, Sanchez JC, Burkhard PR,  (2014) &quot;Proteomic analysis of human substantia nigra identifies novel candidates involved in Parkinson&#39;s disease pathogenesis.&quot; <i>Proteomics</i> <b>14</b>(6):784&ndash;94; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24449343 24449343]; doi: [https://dx.doi.org/10.1002/pmic.201300342 10.1002/pmic.201300342]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24449343 48].
 +
#Pesciotta EN, Sriswasdi S, Tang HY, Speicher DW, Mason PJ, Bessler M,  (2014) &quot;Dysferlin and other non-red cell proteins accumulate in the red cell membrane of Diamond-Blackfan Anemia patients.&quot; <i>PLoS One</i> <b>9</b>(1):e85504; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24454878 24454878]; doi: [https://dx.doi.org/10.1371/journal.pone.0085504 10.1371/journal.pone.0085504]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24454878 346].
 +
#Ferreira R, Vitorino R, Padr&atilde;o AI, Espadas G, Mancuso FM, Moreira-Gon&ccedil;alves D, Castro-Sousa G, Henriques-Coelho T, Oliveira PA, Barros AS, Duarte JA, Sabid&oacute; E, Amado F,  (2014) &quot;Lifelong exercise training modulates cardiac mitochondrial phosphoproteome in rats.&quot; <i>J Proteome Res</i> <b>13</b>(4):2045&ndash;55; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24467267 24467267]; doi: [https://dx.doi.org/10.1021/pr4011926 10.1021/pr4011926]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24467267 20].
 +
#Barth J, Bergner SV, Jaeger D, Niehues A, Schulze S, Scholz M, Fufezan C,  (2014) &quot;The interplay of light and oxygen in the reactive oxygen stress response of Chlamydomonas reinhardtii dissected by quantitative mass spectrometry.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(4):969&ndash;89; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24482124 24482124]; doi: [https://dx.doi.org/10.1074/mcp.M113.032771 10.1074/mcp.M113.032771]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24482124 198].
 +
#Kulak NA, Pichler G, Paron I, Nagaraj N, Mann M,  (2014) &quot;Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells.&quot; <i>Nat Methods</i> <b>11</b>(3):319&ndash;24; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24487582 24487582]; doi: [https://dx.doi.org/10.1038/nmeth.2834 10.1038/nmeth.2834]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24487582 59].
 +
#Weinert BT, Iesmantavicius V, Moustafa T, Sch&ouml;lz C, Wagner SA, Magnes C, Zechner R, Choudhary C,  (2014) &quot;Acetylation dynamics and stoichiometry in Saccharomyces cerevisiae.&quot; <i>Mol Syst Biol</i> <b>10</b>:716; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24489116 24489116]; doi: [https://dx.doi.org/10.1002/msb.134766 10.1002/msb.134766]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24489116 88].
 +
#Kjellin H, Johansson H, H&ouml;&ouml;g A, Lehti&ouml; J, Jakobsson PJ, Kjellman M,  (2014) &quot;Differentially expressed proteins in malignant and benign adrenocortical tumors.&quot; <i>PLoS One</i> <b>9</b>(2):e87951; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24498411 24498411]; doi: [https://dx.doi.org/10.1371/journal.pone.0087951 10.1371/journal.pone.0087951]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24498411 2].
 +
#van den Biggelaar M, Hern&aacute;ndez-Fernaud JR, van den Eshof BL, Neilson LJ, Meijer AB, Mertens K, Zanivan S,  (2014) &quot;Quantitative phosphoproteomics unveils temporal dynamics of thrombin signaling in human endothelial cells.&quot; <i>Blood</i> <b>123</b>(12):e22&ndash;36; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24501219 24501219]; doi: [https://dx.doi.org/10.1182/blood-2013-12-546036 10.1182/blood-2013-12-546036]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24501219 87].
 +
#Eguren M, &Aacute;lvarez-Fern&aacute;ndez M, Garc&iacute;a F, L&oacute;pez-Contreras AJ, Fujimitsu K, Yaguchi H, Luque-Garc&iacute;a JL, Fern&aacute;ndez-Capetillo O, Mu&ntilde;oz J, Yamano H, Malumbres M,  (2014) &quot;A synthetic lethal interaction between APC/C and topoisomerase poisons uncovered by proteomic screens.&quot; <i>Cell Rep</i> <b>6</b>(4):670&ndash;83; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24508461 24508461]; doi: [https://dx.doi.org/10.1016/j.celrep.2014.01.017 10.1016/j.celrep.2014.01.017]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24508461 119].
 +
#Rinschen MM, Wu X, K&ouml;nig T, Pisitkun T, Hagmann H, Pahmeyer C, Lamkemeyer T, Kohli P, Schnell N, Schermer B, Dryer S, Brooks BR, Beltrao P, Krueger M, Brinkkoetter PT, Benzing T,  (2014) &quot;Phosphoproteomic analysis reveals regulatory mechanisms at the kidney filtration barrier.&quot; <i>J Am Soc Nephrol</i> <b>25</b>(7):1509&ndash;22; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24511133 24511133]; doi: [https://dx.doi.org/10.1681/ASN.2013070760 10.1681/ASN.2013070760]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24511133 34].
 +
#Tao D, King JG, Tweedell RE, Jost PJ, Boddey JA, Dinglasan RR,  (2014) &quot;The acute transcriptomic and proteomic response of HC-04 hepatoma cells to hepatocyte growth factor and its implications for Plasmodium falciparum sporozoite invasion.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(5):1153&ndash;64; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24532842 24532842]; doi: [https://dx.doi.org/10.1074/mcp.M113.035584 10.1074/mcp.M113.035584]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24532842 51].
 +
#Kustatscher G, H&eacute;garat N, Wills KL, Furlan C, Bukowski-Wills JC, Hochegger H, Rappsilber J,  (2014) &quot;Proteomics of a fuzzy organelle: interphase chromatin.&quot; <i>EMBO J</i> <b>33</b>(6):648&ndash;64; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24534090 24534090]; doi: [https://dx.doi.org/10.1002/embj.201387614 10.1002/embj.201387614]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24534090 519].
 +
#Bland C, Hartmann EM, Christie-Oleza JA, Fernandez B, Armengaud J,  (2014) &quot;N-Terminal-oriented proteogenomics of the marine bacterium roseobacter denitrificans Och114 using N-Succinimidyloxycarbonylmethyl)tris(2,4,6-trimethoxyphenyl)phosphonium bromide (TMPP) labeling and diagonal chromatography.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(5):1369&ndash;81; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24536027 24536027]; doi: [https://dx.doi.org/10.1074/mcp.O113.032854 10.1074/mcp.O113.032854]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24536027 4].
 +
#Zufferey A, Schvartz D, Nolli S, Reny JL, Sanchez JC, Fontana P,  (2014) &quot;Characterization of the platelet granule proteome: evidence of the presence of MHC1 in alpha-granules.&quot; <i>J Proteomics</i> <b>101</b>:130&ndash;40; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24549006 24549006]; doi: [https://dx.doi.org/10.1016/j.jprot.2014.02.008 10.1016/j.jprot.2014.02.008]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24549006 8].
 +
#Depuydt G, Xie F, Petyuk VA, Smolders A, Brewer HM, Camp DG 2nd, Smith RD, Braeckman BP,  (2014) &quot;LC-MS proteomics analysis of the insulin/IGF-1-deficient Caenorhabditis elegans daf-2(e1370) mutant reveals extensive restructuring of intermediary metabolism.&quot; <i>J Proteome Res</i> <b>13</b>(4):1938&ndash;56; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24555535 24555535]; doi: [https://dx.doi.org/10.1021/pr401081b 10.1021/pr401081b]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24555535 40].
 +
#Lange PF, Huesgen PF, Nguyen K, Overall CM,  (2014) &quot;Annotating N termini for the human proteome project: N termini and N&alpha;-acetylation status differentiate stable cleaved protein species from degradation remnants in the human erythrocyte proteome.&quot; <i>J Proteome Res</i> <b>13</b>(4):2028&ndash;44; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24555563 24555563]; doi: [https://dx.doi.org/10.1021/pr401191w 10.1021/pr401191w]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24555563 101].
 +
#Plohnke N, Hamann A, Poetsch A, Osiewacz HD, R&ouml;gner M, Rexroth S,  (2014) &quot;Proteomic analysis of mitochondria from senescent Podospora anserina casts new light on ROS dependent aging mechanisms.&quot; <i>Exp Gerontol</i> <b>56</b>:13&ndash;25; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24556281 24556281]; doi: [https://dx.doi.org/10.1016/j.exger.2014.02.008 10.1016/j.exger.2014.02.008]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24556281 36].
 +
#Kolinko I, Loh&szlig;e A, Borg S, Raschdorf O, Jogler C, Tu Q, P&oacute;sfai M, Tompa E, Plitzko JM, Brachmann A, Wanner G, M&uuml;ller R, Zhang Y, Sch&uuml;ler D,  (2014) &quot;Biosynthesis of magnetic nanostructures in a foreign organism by transfer of bacterial magnetosome gene clusters.&quot; <i>Nat Nanotechnol</i> <b>9</b>(3):193&ndash;7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24561353 24561353]; doi: [https://dx.doi.org/10.1038/nnano.2014.13 10.1038/nnano.2014.13]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24561353 1].
 +
#Warinner C, Rodrigues JF, Vyas R, Trachsel C, Shved N, Grossmann J, Radini A, Hancock Y, Tito RY, Fiddyment S, Speller C, Hendy J, Charlton S, Luder HU, Salazar-Garc&iacute;a DC, Eppler E, Seiler R, Hansen LH, Castruita JA, Barkow-Oesterreicher S, Teoh KY, Kelstrup CD, Olsen JV, Nanni P, Kawai T, Willerslev E, von Mering C, Lewis CM Jr, Collins MJ, Gilbert MT, R&uuml;hli F, Cappellini E,  (2014) &quot;Pathogens and host immunity in the ancient human oral cavity.&quot; <i>Nat Genet</i> <b>46</b>(4):336&ndash;44; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24562188 24562188]; doi: [https://dx.doi.org/10.1038/ng.2906 10.1038/ng.2906]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24562188 18].
 +
#Sigdel TK, Nicora CD, Hsieh SC, Dai H, Qian WJ, Camp DG 2nd, Sarwal MM,  (2014) &quot;Optimization for peptide sample preparation for urine peptidomics.&quot; <i>Clin Proteomics</i> <b>11</b>(1):7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24568099 24568099]; doi: [https://dx.doi.org/10.1186/1559-0275-11-7 10.1186/1559-0275-11-7]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24568099 8].
 +
#Husi H, Van Agtmael T, Mullen W, Bahlmann FH, Schanstra JP, Vlahou A, Delles C, Perco P, Mischak H,  (2014) &quot;Proteome-based systems biology analysis of the diabetic mouse aorta reveals major changes in fatty acid biosynthesis as potential hallmark in diabetes mellitus-associated vascular disease.&quot; <i>Circ Cardiovasc Genet</i> <b>7</b>(2):161&ndash;70; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24573165 24573165]; doi: [https://dx.doi.org/10.1161/CIRCGENETICS.113.000196 10.1161/CIRCGENETICS.113.000196]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24573165 14].
 +
#Talamantes T, Ughy B, Domonkos I, Kis M, Gombos Z, Prokai L,  (2014) &quot;Label-free LC-MS/MS identification of phosphatidylglycerol-regulated proteins in Synechocystis sp. PCC6803.&quot; <i>Proteomics</i> <b>14</b>(9):1053&ndash;7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24574175 24574175]; doi: [https://dx.doi.org/10.1002/pmic.201300372 10.1002/pmic.201300372]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24574175 30].
 +
#Benevento M, Di Palma S, Snijder J, Moyer CL, Reddy VS, Nemerow GR, Heck AJ,  (2014) &quot;Adenovirus composition, proteolysis, and disassembly studied by in-depth qualitative and quantitative proteomics.&quot; <i>J Biol Chem</i> <b>289</b>(16):11421&ndash;30; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24591515 24591515]; doi: [https://dx.doi.org/10.1074/jbc.M113.537498 10.1074/jbc.M113.537498]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24591515 5].
 +
#Legendre M, Bartoli J, Shmakova L, Jeudy S, Labadie K, Adrait A, Lescot M, Poirot O, Bertaux L, Bruley C, Cout&eacute; Y, Rivkina E, Abergel C, Claverie JM,  (2014) &quot;Thirty-thousand-year-old distant relative of giant icosahedral DNA viruses with a pandoravirus morphology.&quot; <i>Proc Natl Acad Sci U S A</i> <b>111</b>(11):4274&ndash;9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24591590 24591590]; doi: [https://dx.doi.org/10.1073/pnas.1320670111 10.1073/pnas.1320670111]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24591590 1].
 +
#Ly T, Ahmad Y, Shlien A, Soroka D, Mills A, Emanuele MJ, Stratton MR, Lamond AI,  (2014) &quot;A proteomic chronology of gene expression through the cell cycle in human myeloid leukemia cells.&quot; <i>Elife</i> <b>3</b>:e01630; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24596151 24596151]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24596151 98].
 +
#Bailey DJ, McDevitt MT, Westphall MS, Pagliarini DJ, Coon JJ,  (2014) &quot;Intelligent data acquisition blends targeted and discovery methods.&quot; <i>J Proteome Res</i> <b>13</b>(4):2152&ndash;61; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24611583 24611583]; doi: [https://dx.doi.org/10.1021/pr401278j 10.1021/pr401278j]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24611583 37].
 +
#Dai DF, Karunadharma PP, Chiao YA, Basisty N, Crispin D, Hsieh EJ, Chen T, Gu H, Djukovic D, Raftery D, Beyer RP, MacCoss MJ, Rabinovitch PS,  (2014) &quot;Altered proteome turnover and remodeling by short-term caloric restriction or rapamycin rejuvenate the aging heart.&quot; <i>Aging Cell</i> <b>13</b>(3):529&ndash;39; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24612461 24612461]; doi: [https://dx.doi.org/10.1111/acel.12203 10.1111/acel.12203]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24612461 140].
 +
#Naba A, Clauser KR, Lamar JM, Carr SA, Hynes RO,  (2014) &quot;Extracellular matrix signatures of human mammary carcinoma identify novel metastasis promoters.&quot; <i>Elife</i> <b>3</b>:e01308; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24618895 24618895]; doi: [https://dx.doi.org/10.7554/eLife.01308 10.7554/eLife.01308]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24618895 44].
 +
#Peebo K, Valgepea K, Nahku R, Riis G, Oun M, Adamberg K, Vilu R,  (2014) &quot;Coordinated activation of PTA-ACS and TCA cycles strongly reduces overflow metabolism of acetate in Escherichia coli.&quot; <i>Appl Microbiol Biotechnol</i> <b>98</b>(11):5131&ndash;43; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24633370 24633370]; doi: [https://dx.doi.org/10.1007/s00253-014-5613-y 10.1007/s00253-014-5613-y]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24633370 10].
 +
#Clark CG, Chong PM, McCorrister SJ, Simon P, Walker M, Lee DM, Nguy K, Cheng K, Gilmour MW, Westmacott GR,  (2014) &quot;The CJIE1 prophage of Campylobacter jejuni affects protein expression in growth media with and without bile salts.&quot; <i>BMC Microbiol</i> <b>14</b>:70; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24641125 24641125]; doi: [https://dx.doi.org/10.1186/1471-2180-14-70 10.1186/1471-2180-14-70]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24641125 163].
 +
#Zhang Q, Matzke M, Schepmoes AA, Moore RJ, Webb-Robertson BJ, Hu Z, Monroe ME, Qian WJ, Smith RD, Morgan WF,  (2014) &quot;High and low doses of ionizing radiation induce different secretome profiles in a human skin model.&quot; <i>PLoS One</i> <b>9</b>(3):e92332; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24642900 24642900]; doi: [https://dx.doi.org/10.1371/journal.pone.0092332 10.1371/journal.pone.0092332]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24642900 85].
 +
#de Groot RE, Ganji RS, Bernatik O, Lloyd-Lewis B, Seipel K, &Scaron;edov&aacute; K, Zdr&aacute;hal Z, Dhople VM, Dale TC, Korswagen HC, Bryja V,  (2014) &quot;Huwe1-mediated ubiquitylation of dishevelled defines a negative feedback loop in the Wnt signaling pathway.&quot; <i>Sci Signal</i> <b>7</b>(317):ra26; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24643799 24643799]; doi: [https://dx.doi.org/10.1126/scisignal.2004985 10.1126/scisignal.2004985]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24643799 10].
 +
#Sahasrabuddhe NA, Barbhuiya MA, Bhunia S, Subbannayya T, Gowda H, Advani J, Shrivastav BR, Navani S, Leal P, Roa JC, Chaerkady R, Gupta S, Chatterjee A, Pandey A, Tiwari PK,  (2014) &quot;Identification of prosaposin and transgelin as potential biomarkers for gallbladder cancer using quantitative proteomics.&quot; <i>Biochem Biophys Res Commun</i> <b>446</b>(4):863&ndash;9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24657443 24657443]; doi: [https://dx.doi.org/10.1016/j.bbrc.2014.03.017 10.1016/j.bbrc.2014.03.017]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24657443 29].
 +
#Schwarzer C, Siatkowski M, Pfeiffer MJ, Baeumer N, Drexler HC, Wang B, Fuellen G, Boiani M,  (2014) &quot;Maternal age effect on mouse oocytes: new biological insight from proteomic analysis.&quot; <i>Reproduction</i> <b>148</b>(1):55&ndash;72; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24686459 24686459]; doi: [https://dx.doi.org/10.1530/REP-14-0126 10.1530/REP-14-0126]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24686459 3].
 +
#Kume H, Muraoka S, Kuga T, Adachi J, Narumi R, Watanabe S, Kuwano M, Kodera Y, Matsushita K, Fukuoka J, Masuda T, Ishihama Y, Matsubara H, Nomura F, Tomonaga T,  (2014) &quot;Discovery of colorectal cancer biomarker candidates by membrane proteomic analysis and subsequent verification using selected reaction monitoring (SRM) and tissue microarray (TMA) analysis.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(6):1471&ndash;84; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24687888 24687888]; doi: [https://dx.doi.org/10.1074/mcp.M113.037093 10.1074/mcp.M113.037093]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24687888 6].
 +
#Guo X, Trudgian DC, Lemoff A, Yadavalli S, Mirzaei H,  (2014) &quot;Confetti: a multiprotease map of the HeLa proteome for comprehensive proteomics.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(6):1573&ndash;84; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24696503 24696503]; doi: [https://dx.doi.org/10.1074/mcp.M113.035170 10.1074/mcp.M113.035170]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24696503 99].
 +
#Hiemstra TF, Charles PD, Gracia T, Hester SS, Gatto L, Al-Lamki R, Floto RA, Su Y, Skepper JN, Lilley KS, Karet Frankl FE,  (2014) &quot;Human urinary exosomes as innate immune effectors.&quot; <i>J Am Soc Nephrol</i> <b>25</b>(9):2017&ndash;27; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24700864 24700864]; doi: [https://dx.doi.org/10.1681/ASN.2013101066 10.1681/ASN.2013101066]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24700864 489].
 +
#Shevchuk O, Abidi N, Klawonn F, Wissing J, Nimtz M, Kugler C, Steinert M, Goldmann T, J&auml;nsch L,  (2014) &quot;HOPE-fixation of lung tissue allows retrospective proteome and phosphoproteome studies.&quot; <i>J Proteome Res</i> <b>13</b>(11):5230&ndash;9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24702127 24702127]; doi: [https://dx.doi.org/10.1021/pr500096a 10.1021/pr500096a]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24702127 4].
 +
#Tsai CM, Wu HY, Su TH, Kuo CW, Huang HW, Chung CH, Chen CS, Khoo KH, Chen YJ, Lin KI,  (2014) &quot;Phosphoproteomic analyses reveal that galectin-1 augments the dynamics of B-cell receptor signaling.&quot; <i>J Proteomics</i> <b>103</b>:241&ndash;53; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24704852 24704852]; doi: [https://dx.doi.org/10.1016/j.jprot.2014.03.031 10.1016/j.jprot.2014.03.031]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24704852 15].
 +
#MacLean AM, Orlovskis Z, Kowitwanich K, Zdziarska AM, Angenent GC, Immink RG, Hogenhout SA,  (2014) &quot;Phytoplasma effector SAP54 hijacks plant reproduction by degrading MADS-box proteins and promotes insect colonization in a RAD23-dependent manner.&quot; <i>PLoS Biol</i> <b>12</b>(4):e1001835; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24714165 24714165]; doi: [https://dx.doi.org/10.1371/journal.pbio.1001835 10.1371/journal.pbio.1001835]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24714165 20].
 +
#Bourdetsky D, Schmelzer CE, Admon A,  (2014) &quot;The nature and extent of contributions by defective ribosome products to the HLA peptidome.&quot; <i>Proc Natl Acad Sci U S A</i> <b>111</b>(16):E1591&ndash;9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24715725 24715725]; doi: [https://dx.doi.org/10.1073/pnas.1321902111 10.1073/pnas.1321902111]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24715725 16].
 +
#Azimi A, Pernemalm M, Frostvik Stolt M, Hansson J, Lehti&ouml; J, Egyh&aacute;zi Brage S, Hertzman Johansson C,  (2014) &quot;Proteomics analysis of melanoma metastases: association between S100A13 expression and chemotherapy resistance.&quot; <i>Br J Cancer</i> <b>110</b>(10):2489&ndash;95; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24722184 24722184]; doi: [https://dx.doi.org/10.1038/bjc.2014.169 10.1038/bjc.2014.169]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24722184 146].
 +
#Svozil J, Hirsch-Hoffmann M, Dudler R, Gruissem W, Baerenfaller K,  (2014) &quot;Protein abundance changes and ubiquitylation targets identified after inhibition of the proteasome with syringolin A.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(6):1523&ndash;36; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24732913 24732913]; doi: [https://dx.doi.org/10.1074/mcp.M113.036269 10.1074/mcp.M113.036269]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24732913 128].
 +
#Farrelly LA, Dicker P, Wynne K, English J, Cagney G, F&ouml;cking M, Cotter DR,  (2014) &quot;Adolescent Risperidone treatment alters protein expression associated with protein trafficking and cellular metabolism in the adult rat prefrontal cortex.&quot; <i>Proteomics</i> <b>14</b>(12):1574&ndash;8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24733778 24733778]; doi: [https://dx.doi.org/10.1002/pmic.201300466 10.1002/pmic.201300466]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24733778 30].
 +
#Tran DT, Adhikari J, Fitzgerald MC,  (2014) &quot;StableIsotope Labeling with Amino Acids in Cell Culture (SILAC)-based strategy for proteome-wide thermodynamic analysis of protein-ligand binding interactions.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(7):1800&ndash;13; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24741112 24741112]; doi: [https://dx.doi.org/10.1074/mcp.M113.034702 10.1074/mcp.M113.034702]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24741112 27].
 +
#Kuhlmann K, Tschapek A, Wiese H, Eisenacher M, Meyer HE, Hatt HH, Oeljeklaus S, Warscheid B,  (2014) &quot;The membrane proteome of sensory cilia to the depth of olfactory receptors.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(7):1828&ndash;43; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24748648 24748648]; doi: [https://dx.doi.org/10.1074/mcp.M113.035378 10.1074/mcp.M113.035378]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24748648 91].
 +
#Sansoni V, Casas-Delucchi CS, Rajan M, Schmidt A, B&ouml;nisch C, Thomae AW, Staege MS, Hake SB, Cardoso MC, Imhof A,  (2014) &quot;The histone variant H2A.Bbd is enriched at sites of DNA synthesis.&quot; <i>Nucleic Acids Res</i> <b>42</b>(10):6405&ndash;20; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24753410 24753410]; doi: [https://dx.doi.org/10.1093/nar/gku303 10.1093/nar/gku303]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24753410 96].
 +
#Han D, Jin J, Woo J, Min H, Kim Y,  (2014) &quot;Proteomic analysis of mouse astrocytes and their secretome by a combination of FASP and StageTip-based, high pH, reversed-phase fractionation.&quot; <i>Proteomics</i> <b>14</b>(13-14):1604&ndash;9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24753479 24753479]; doi: [https://dx.doi.org/10.1002/pmic.201300495 10.1002/pmic.201300495]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24753479 107].
 +
#Chiasserini D, van Weering JR, Piersma SR, Pham TV, Malekzadeh A, Teunissen CE, de Wit H, Jim&eacute;nez CR,  (2014) &quot;Proteomic analysis of cerebrospinal fluid extracellular vesicles: a comprehensive dataset.&quot; <i>J Proteomics</i> <b>106</b>:191&ndash;204; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24769233 24769233]; doi: [https://dx.doi.org/10.1016/j.jprot.2014.04.028 10.1016/j.jprot.2014.04.028]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24769233 36].
 +
#Renvois&eacute; M, Bonhomme L, Davanture M, Valot B, Zivy M, Lemaire C,  (2014) &quot;Quantitative variations of the mitochondrial proteome and phosphoproteome during fermentative and respiratory growth in Saccharomyces cerevisiae.&quot; <i>J Proteomics</i> <b>106</b>:140&ndash;50; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24769239 24769239]; doi: [https://dx.doi.org/10.1016/j.jprot.2014.04.022 10.1016/j.jprot.2014.04.022]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24769239 48].
 +
#Eravci M, Sommer C, Selbach M,  (2014) &quot;IPG strip-based peptide fractionation for shotgun proteomics.&quot; <i>Methods Mol Biol</i> <b>1156</b>:67&ndash;77; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24791982 24791982]; doi: [https://dx.doi.org/10.1007/978-1-4939-0685-7_5 10.1007/978-1-4939-0685-7_5]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24791982 41].
 +
#G&uuml;ther ML, Urbaniak MD, Tavendale A, Prescott A, Ferguson MA,  (2014) &quot;High-confidence glycosome proteome for procyclic form Trypanosoma brucei by epitope-tag organelle enrichment and SILAC proteomics.&quot; <i>J Proteome Res</i> <b>13</b>(6):2796&ndash;806; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24792668 24792668]; doi: [https://dx.doi.org/10.1021/pr401209w 10.1021/pr401209w]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24792668 154].
 +
#Guyonnet B, Egge N, Cornwall GA,  (2014) &quot;Functional amyloids in the mouse sperm acrosome.&quot; <i>Mol Cell Biol</i> <b>34</b>(14):2624&ndash;34; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24797071 24797071]; doi: [https://dx.doi.org/10.1128/MCB.00073-14 10.1128/MCB.00073-14]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24797071 12].
 +
#Tong J, Taylor P, Moran MF,  (2014) &quot;Proteomic analysis of the epidermal growth factor receptor (EGFR) interactome and post-translational modifications associated with receptor endocytosis in response to EGF and stress.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(7):1644&ndash;58; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24797263 24797263]; doi: [https://dx.doi.org/10.1074/mcp.M114.038596 10.1074/mcp.M114.038596]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24797263 69].
 +
#Giansanti P, Preisinger C, Huber KV, Gridling M, Superti-Furga G, Bennett KL, Heck AJ,  (2014) &quot;Evaluating the promiscuous nature of tyrosine kinase inhibitors assessed in A431 epidermoid carcinoma cells by both chemical- and phosphoproteomics.&quot; <i>ACS Chem Biol</i> <b>9</b>(7):1490&ndash;8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24804581 24804581]; doi: [https://dx.doi.org/10.1021/cb500116c 10.1021/cb500116c]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24804581 71].
 +
#Rowshanravan B, Woodcock SA, Botella JA, Kiermayer C, Schneuwly S, Hughes DA,  (2014) &quot;RasGAP mediates neuronal survival in Drosophila through direct regulation of Rab5-dependent endocytosis.&quot; <i>J Cell Sci</i> <b>127</b>(Pt 13):2849&ndash;61; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24816559 24816559]; doi: [https://dx.doi.org/10.1242/jcs.139329 10.1242/jcs.139329]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24816559 42].
 +
#Bracht T, Hagemann S, Loscha M, Megger DA, Padden J, Eisenacher M, Kuhlmann K, Meyer HE, Baba HA, Sitek B,  (2014) &quot;Proteome analysis of a hepatocyte-specific BIRC5 (survivin)-knockout mouse model during liver regeneration.&quot; <i>J Proteome Res</i> <b>13</b>(6):2771&ndash;82; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24818710 24818710]; doi: [https://dx.doi.org/10.1021/pr401188r 10.1021/pr401188r]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24818710 68].
 +
#Siljam&auml;ki P, Varmanen P, Kankainen M, Sukura A, Savijoki K, Nyman TA,  (2014) &quot;Comparative exoprotein profiling of different Staphylococcus epidermidis strains reveals potential link between nonclassical protein export and virulence.&quot; <i>J Proteome Res</i> <b>13</b>(7):3249&ndash;61; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24840314 24840314]; doi: [https://dx.doi.org/10.1021/pr500075j 10.1021/pr500075j]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24840314 94].
 +
#Barth TK, Schade GO, Schmidt A, Vetter I, Wirth M, Heun P, Thomae AW, Imhof A,  (2014) &quot;Identification of novel Drosophila centromere-associated proteins.&quot; <i>Proteomics</i> <b>14</b>(19):2167&ndash;78; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24841622 24841622]; doi: [https://dx.doi.org/10.1002/pmic.201400052 10.1002/pmic.201400052]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24841622 72].
 +
#Poulsen ET, Dyrlund TF, Runager K, Scavenius C, Krogager TP, H&oslash;jrup P, Th&oslash;gersen IB, Sanggaard KW, Vorum H, Hjortdal J, Enghild JJ,  (2014) &quot;Proteomics of Fuchs&#39; endothelial corneal dystrophy support that the extracellular matrix of Descemet&#39;s membrane is disordered.&quot; <i>J Proteome Res</i> <b>13</b>(11):4659&ndash;67; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24846694 24846694]; doi: [https://dx.doi.org/10.1021/pr500252r 10.1021/pr500252r]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24846694 66].
 +
#Leong HS, Dawson K, Wirth C, Li Y, Connolly Y, Smith DL, Wilkinson CR, Miller CJ,  (2014) &quot;A global non-coding RNA system modulates fission yeast protein levels in response to stress.&quot; <i>Nat Commun</i> <b>5</b>:3947; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24853205 24853205]; doi: [https://dx.doi.org/10.1038/ncomms4947 10.1038/ncomms4947]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24853205 60].
 +
#Kim MS, Pinto SM, Getnet D, Nirujogi RS, Manda SS, Chaerkady R, Madugundu AK, Kelkar DS, Isserlin R, Jain S, Thomas JK, Muthusamy B, Leal-Rojas P, Kumar P, Sahasrabuddhe NA, Balakrishnan L, Advani J, George B, Renuse S, Selvan LD, Patil AH, Nanjappa V, Radhakrishnan A, Prasad S, Subbannayya T, Raju R, Kumar M, Sreenivasamurthy SK, Marimuthu A, Sathe GJ, Chavan S, Datta KK, Subbannayya Y, Sahu A, Yelamanchi SD, Jayaram S, Rajagopalan P, Sharma J, Murthy KR, Syed N, Goel R, Khan AA, Ahmad S, Dey G, Mudgal K, Chatterjee A, Huang TC, Zhong J, Wu X, Shaw PG, Freed D, Zahari MS, Mukherjee KK, Shankar S, Mahadevan A, Lam H, Mitchell CJ, Shankar SK, Satishchandra P, Schroeder JT, Sirdeshmukh R, Maitra A, Leach SD, Drake CG, Halushka MK, Prasad TS, Hruban RH, Kerr CL, Bader GD, Iacobuzio-Donahue CA, Gowda H, Pandey A,  (2014) &quot;A draft map of the human proteome.&quot; <i>Nature</i> <b>509</b>(7502):575&ndash;81; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24870542 24870542]; doi: [https://dx.doi.org/10.1038/nature13302 10.1038/nature13302]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24870542 88].
 +
#Wilhelm M, Schlegl J, Hahne H, Gholami AM, Lieberenz M, Savitski MM, Ziegler E, Butzmann L, Gessulat S, Marx H, Mathieson T, Lemeer S, Schnatbaum K, Reimer U, Wenschuh H, Mollenhauer M, Slotta-Huspenina J, Boese JH, Bantscheff M, Gerstmair A, Faerber F, Kuster B,  (2014) &quot;Mass-spectrometry-based draft of the human proteome.&quot; <i>Nature</i> <b>509</b>(7502):582&ndash;7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24870543 24870543]; doi: [https://dx.doi.org/10.1038/nature13319 10.1038/nature13319]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24870543 1257].
 +
#van der Post S, Hansson GC,  (2014) &quot;Membrane protein profiling of human colon reveals distinct regional differences.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(9):2277&ndash;87; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24889196 24889196]; doi: [https://dx.doi.org/10.1074/mcp.M114.040204 10.1074/mcp.M114.040204]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24889196 16].
 +
#Kim MS, Zhong Y, Yachida S, Rajeshkumar NV, Abel ML, Marimuthu A, Mudgal K, Hruban RH, Poling JS, Tyner JW, Maitra A, Iacobuzio-Donahue CA, Pandey A,  (2014) &quot;Heterogeneity of pancreatic cancer metastases in a single patient revealed by quantitative proteomics.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(11):2803&ndash;11; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24895378 24895378]; doi: [https://dx.doi.org/10.1074/mcp.M114.038547 10.1074/mcp.M114.038547]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24895378 24].
 +
#Siljam&auml;ki P, Varmanen P, Kankainen M, Py&ouml;r&auml;l&auml; S, Karonen T, Iivanainen A, Auvinen P, Paulin L, Laine PK, Taponen S, Simojoki H, Sukura A, Nyman TA, Savijoki K,  (2014) &quot;Comparative proteome profiling of bovine and human Staphylococcus epidermidis strains for screening specifically expressed virulence and adaptation proteins.&quot; <i>Proteomics</i> <b>14</b>(16):1890&ndash;4; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24909406 24909406]; doi: [https://dx.doi.org/10.1002/pmic.201300275 10.1002/pmic.201300275]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24909406 3].
 +
#K&ouml;cher T, Pichler P, De Pra M, Rieux L, Swart R, Mechtler K,  (2014) &quot;Development and performance evaluation of an ultralow flow nanoliquid chromatography-tandem mass spectrometry set-up.&quot; <i>Proteomics</i> <b>14</b>(17-18):1999&ndash;2007; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24920484 24920484]; doi: [https://dx.doi.org/10.1002/pmic.201300418 10.1002/pmic.201300418]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24920484 39].
 +
#Corradini E, Vallur R, Raaijmakers LM, Feil S, Feil R, Heck AJ, Scholten A,  (2014) &quot;Alterations in the cerebellar (Phospho)proteome of a cyclic guanosine monophosphate (cGMP)-dependent protein kinase knockout mouse.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(8):2004&ndash;16; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24925903 24925903]; doi: [https://dx.doi.org/10.1074/mcp.M113.035154 10.1074/mcp.M113.035154]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24925903 6].
 +
#Kukuczka B, Magneschi L, Petroutsos D, Steinbeck J, Bald T, Powikrowska M, Fufezan C, Finazzi G, Hippler M,  (2014) &quot;Proton Gradient Regulation5-Like1-Mediated Cyclic Electron Flow Is Crucial for Acclimation to Anoxia and Complementary to Nonphotochemical Quenching in Stress Adaptation.&quot; <i>Plant Physiol</i> <b>165</b>(4):1604&ndash;1617; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24948831 24948831]; doi: [https://dx.doi.org/10.1104/pp.114.240648 10.1104/pp.114.240648]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24948831 79].
 +
#Cuello F, Shankar-Hari M, Mayr U, Yin X, Marshall M, Suna G, Willeit P, Langley SR, Jayawardhana T, Zeller T, Terblanche M, Shah AM, Mayr M,  (2014) &quot;Redox state of pentraxin 3 as a novel biomarker for resolution of inflammation and survival in sepsis.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(10):2545&ndash;57; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24958171 24958171]; doi: [https://dx.doi.org/10.1074/mcp.M114.039446 10.1074/mcp.M114.039446]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24958171 384].
 +
#de Graaf EL, Kaplon J, Zhou H, Heck AJ, Peeper DS, Altelaar AF,  (2014) &quot;Phosphoproteome dynamics in onset and maintenance of oncogene-induced senescence.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(8):2089&ndash;100; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24961811 24961811]; doi: [https://dx.doi.org/10.1074/mcp.M113.035436 10.1074/mcp.M113.035436]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24961811 223].
 +
#Iesmantavicius V, Weinert BT, Choudhary C,  (2014) &quot;Convergence of ubiquitylation and phosphorylation signaling in rapamycin-treated yeast cells.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(8):1979&ndash;92; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24961812 24961812]; doi: [https://dx.doi.org/10.1074/mcp.O113.035683 10.1074/mcp.O113.035683]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24961812 71].
 +
#Jefferson M, Donaszi-Ivanov A, Pollen S, Dalmay T, Saalbach G, Powell PP,  (2014) &quot;Host factors that interact with the pestivirus N-terminal protease, Npro, are components of the ribonucleoprotein complex.&quot; <i>J Virol</i> <b>88</b>(18):10340&ndash;53; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24965446 24965446]; doi: [https://dx.doi.org/10.1128/JVI.00984-14 10.1128/JVI.00984-14]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24965446 30].
 +
#Milbradt J, Kraut A, Hutterer C, Sonntag E, Schmeiser C, Ferro M, Wagner S, Lenac T, Claus C, Pinkert S, Hamilton ST, Rawlinson WD, Sticht H, Cout&eacute; Y, Marschall M,  (2014) &quot;Proteomic analysis of the multimeric nuclear egress complex of human cytomegalovirus.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(8):2132&ndash;46; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24969177 24969177]; doi: [https://dx.doi.org/10.1074/mcp.M113.035782 10.1074/mcp.M113.035782]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24969177 24].
 +
#Fischer MG, Kelly I, Foster LJ, Suttle CA,  (2014) &quot;The virion of Cafeteria roenbergensis virus (CroV) contains a complex suite of proteins for transcription and DNA repair.&quot; <i>Virology</i> <b>466-467</b>:82&ndash;94; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24973308 24973308]; doi: [https://dx.doi.org/10.1016/j.virol.2014.05.029 10.1016/j.virol.2014.05.029]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24973308 10].
 +
#Chiva C, Ortega M, Sabid&oacute; E,  (2014) &quot;Influence of the digestion technique, protease, and missed cleavage peptides in protein quantitation.&quot; <i>J Proteome Res</i> <b>13</b>(9):3979&ndash;86; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24986539 24986539]; doi: [https://dx.doi.org/10.1021/pr500294d 10.1021/pr500294d]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24986539 89].
 +
#Uechi G, Sun Z, Schreiber EM, Halfter W, Balasubramani M,  (2014) &quot;Proteomic View of Basement Membranes from Human Retinal Blood Vessels, Inner Limiting Membranes, and Lens Capsules.&quot; <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24990792 24990792]; doi: [https://dx.doi.org/10.1021/pr5002065 10.1021/pr5002065]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24990792 315].
 +
#Zhang H, Wu P, Chen F, Hao Y, Lao Y, Ren L, Sun L, Sun W, Wei H, Chan DW, Jiang Y, He F,  (2014) &quot;SILAC-based quantitative proteomic analysis of secretome between activated and reverted hepatic stellate cells.&quot; <i>Proteomics</i> <b>14</b>(17-18):1977&ndash;86; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24995952 24995952]; doi: [https://dx.doi.org/10.1002/pmic.201300539 10.1002/pmic.201300539]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24995952 30].
 +
#Pasillas MP, Shields S, Reilly R, Strnadel J, Behl C, Park R, Yates JR 3rd, Klemke R, Gonias SL, Coppinger JA,  (2015) &quot;Proteomic analysis reveals a role for Bcl2-associated athanogene 3 and major vault protein in resistance to apoptosis in senescent cells by regulating ERK1/2 activation.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(1):1&ndash;14; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24997994 24997994]; doi: [https://dx.doi.org/10.1074/mcp.M114.037697 10.1074/mcp.M114.037697]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24997994 51].
 +
#Chopra T, Hamelin R, Armand F, Chiappe D, Moniatte M, McKinney JD,  (2014) &quot;Quantitative mass spectrometry reveals plasticity of metabolic networks in Mycobacterium smegmatis.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(11):3014&ndash;28; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24997995 24997995]; doi: [https://dx.doi.org/10.1074/mcp.M113.034082 10.1074/mcp.M113.034082]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24997995 28].
 +
#&Ouml;hman T, S&ouml;derholm S, Hintsanen P, V&auml;lim&auml;ki E, Lietz&eacute;n N, MacKintosh C, Aittokallio T, Matikainen S, Nyman TA,  (2014) &quot;Phosphoproteomics combined with quantitative 14-3-3-affinity capture identifies SIRT1 and RAI as novel regulators of cytosolic double-stranded RNA recognition pathway.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(10):2604&ndash;17; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24997996 24997996]; doi: [https://dx.doi.org/10.1074/mcp.M114.038968 10.1074/mcp.M114.038968]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24997996 44].
 +
#Sangar V, Funk CC, Kusebauch U, Campbell DS, Moritz RL, Price ND,  (2014) &quot;Quantitative proteomic analysis reveals effects of epidermal growth factor receptor (EGFR) on invasion-promoting proteins secreted by glioblastoma cells.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(10):2618&ndash;31; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24997998 24997998]; doi: [https://dx.doi.org/10.1074/mcp.M114.040428 10.1074/mcp.M114.040428]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24997998 8].
 +
#Savijoki K, Iivanainen A, Siljam&auml;ki P, Laine PK, Paulin L, Karonen T, Py&ouml;r&auml;l&auml; S, Kankainen M, Nyman TA, Salom&auml;ki T, Koskinen P, Holm L, Simojoki H, Taponen S, Sukura A, Kalkkinen N, Auvinen P, Varmanen P,  (2014) &quot;Genomics and Proteomics Provide New Insight into the Commensal and Pathogenic Lifestyles of Bovine- and Human-Associated Staphylococcus epidermidis Strains.&quot; <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25014494 25014494]; doi: [https://dx.doi.org/10.1021/pr500322d 10.1021/pr500322d]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25014494 8].
 +
#de Keijzer J, de Haas PE, de Ru AH, van Veelen PA, van Soolingen D,  (2014) &quot;Disclosure of selective advantages in the &quot;modern&quot; sublineage of the Mycobacterium tuberculosis Beijing genotype family by quantitative proteomics.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(10):2632&ndash;45; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25022876 25022876]; doi: [https://dx.doi.org/10.1074/mcp.M114.038380 10.1074/mcp.M114.038380]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25022876 152].
 +
#Engel E, Viargues P, Mortier M, Taillebourg E, Cout&eacute; Y, Thevenon D, Fauvarque MO,  (2014) &quot;Identifying USPs regulating immune signals in Drosophila: USP2 deubiquitinates Imd and promotes its degradation by interacting with the proteasome.&quot; <i>Cell Commun Signal</i> <b>12</b>:41; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25027767 25027767]; doi: [https://dx.doi.org/10.1186/PREACCEPT-1588328929121802 10.1186/PREACCEPT-1588328929121802]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25027767 2].
 +
#Padden J, Megger DA, Bracht T, Reis H, Ahrens M, Kohl M, Eisenacher M, Schlaak JF, Canbay AE, Weber F, Hoffmann AC, Kuhlmann K, Meyer HE, Baba HA, Sitek B,  (2014) &quot;Identification of novel biomarker candidates for the immunohistochemical diagnosis of cholangiocellular carcinoma.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(10):2661&ndash;72; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25034945 25034945]; doi: [https://dx.doi.org/10.1074/mcp.M113.034942 10.1074/mcp.M113.034942]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25034945 16].
 +
#Naba A, Clauser KR, Whittaker CA, Carr SA, Tanabe KK, Hynes RO,  (2014) &quot;Extracellular matrix signatures of human primary metastatic colon cancers and their metastases to liver.&quot; <i>BMC Cancer</i> <b>14</b>:518; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25037231 25037231]; doi: [https://dx.doi.org/10.1186/1471-2407-14-518 10.1186/1471-2407-14-518]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25037231 176].
 +
#Guldbrandsen A, Vethe H, Farag Y, Oveland E, Garberg H, Berle M, Myhr KM, Opsahl JA, Barsnes H, Berven FS,  (2014) &quot;In-depth characterization of the cerebrospinal fluid (CSF) proteome displayed through the CSF proteome resource (CSF-PR).&quot; <i>Mol Cell Proteomics</i> <b>13</b>(11):3152&ndash;63; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25038066 25038066]; doi: [https://dx.doi.org/10.1074/mcp.M114.038554 10.1074/mcp.M114.038554]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25038066 88].
 +
#Chen YJ, Ching WC, Chen JS, Lee TY, Lu CT, Chou HC, Lin PY, Khoo KH, Chen JH, Chen YJ,  (2014) &quot;Decoding the s-nitrosoproteomic atlas in individualized human colorectal cancer tissues using a label-free quantitation strategy.&quot; <i>J Proteome Res</i> <b>13</b>(11):4942&ndash;58; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25040305 25040305]; doi: [https://dx.doi.org/10.1021/pr5002675 10.1021/pr5002675]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25040305 54].
 +
#Zhang B, Wang J, Wang X, Zhu J, Liu Q, Shi Z, Chambers MC, Zimmerman LJ, Shaddox KF, Kim S, Davies SR, Wang S, Wang P, Kinsinger CR, Rivers RC, Rodriguez H, Townsend RR, Ellis MJ, Carr SA, Tabb DL, Coffey RJ, Slebos RJ, Liebler DC, NCI CPTAC.,  (2014) &quot;Proteogenomic characterization of human colon and rectal cancer.&quot; <i>Nature</i> <b>513</b>(7518):382&ndash;7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25043054 25043054]; doi: [https://dx.doi.org/10.1038/nature13438 10.1038/nature13438]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25043054 1381].
 +
#An E, Narayanan M, Manes NP, Nita-Lazar A,  (2014) &quot;Characterization of functional reprogramming during osteoclast development using quantitative proteomics and mRNA profiling.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(10):2687&ndash;704; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25044017 25044017]; doi: [https://dx.doi.org/10.1074/mcp.M113.034371 10.1074/mcp.M113.034371]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25044017 73].
 +
#V&eacute;gh MJ, Rausell A, Loos M, Heldring CM, Jurkowski W, van Nierop P, Paliukhovich I, Li KW, del Sol A, Smit AB, Spijker S, van Kesteren RE,  (2014) &quot;Hippocampal extracellular matrix levels and stochasticity in synaptic protein expression increase with age and are associated with age-dependent cognitive decline.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(11):2975&ndash;85; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25044018 25044018]; doi: [https://dx.doi.org/10.1074/mcp.M113.032086 10.1074/mcp.M113.032086]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25044018 8].
 +
#Heo S, Spoerk S, Birner-Gruenberger R, Lubec G,  (2014) &quot;Gel-based mass spectrometric analysis of hippocampal transmembrane proteins using high resolution LTQ Orbitrap Velos Pro.&quot; <i>Proteomics</i> <b>14</b>(17-18):2084&ndash;8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25044505 25044505]; doi: [https://dx.doi.org/10.1002/pmic.201400077 10.1002/pmic.201400077]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25044505 60].
 +
#Aaseb&oslash; E, Vaudel M, Mjaavatten O, Gausdal G, Van der Burgh A, Gjertsen BT, D&oslash;skeland SO, Bruserud O, Berven FS, Selheim F,  (2014) &quot;Performance of super-SILAC based quantitative proteomics for comparison of different acute myeloid leukemia (AML) cell lines.&quot; <i>Proteomics</i> <b>14</b>(17-18):1971&ndash;6; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25044641 25044641]; doi: [https://dx.doi.org/10.1002/pmic.201300448 10.1002/pmic.201300448]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25044641 186].
 +
#Soleilhavoup C, Tsikis G, Labas V, Harichaux G, Kohnke PL, Dacheux JL, Gu&eacute;rin Y, Gatti JL, de Graaf SP, Druart X,  (2014) &quot;Ram seminal plasma proteome and its impact on liquid preservation of spermatozoa.&quot; <i>J Proteomics</i> <b>109</b>:245&ndash;60; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25053255 25053255]; doi: [https://dx.doi.org/10.1016/j.jprot.2014.07.007 10.1016/j.jprot.2014.07.007]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25053255 114].
 +
#Smits AH, Lindeboom RG, Perino M, van Heeringen SJ, Veenstra GJ, Vermeulen M,  (2014) &quot;Global absolute quantification reveals tight regulation of protein expression in single Xenopus eggs.&quot; <i>Nucleic Acids Res</i> <b>42</b>(15):9880&ndash;91; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25056316 25056316]; doi: [https://dx.doi.org/10.1093/nar/gku661 10.1093/nar/gku661]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25056316 62].
 +
#Tao D, Ubaida-Mohien C, Mathias DK, King JG, Pastrana-Mena R, Tripathi A, Goldowitz I, Graham DR, Moss E, Marti M, Dinglasan RR,  (2014) &quot;Sex-partitioning of the Plasmodium falciparum stage V gametocyte proteome provides insight into falciparum-specific cell biology.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(10):2705&ndash;24; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25056935 25056935]; doi: [https://dx.doi.org/10.1074/mcp.M114.040956 10.1074/mcp.M114.040956]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25056935 10].
 +
#Klaubauf S, Narang HM, Post H, Zhou M, Brunner K, Mach-Aigner AR, Mach RL, Heck AJ, Altelaar AF, de Vries RP,  (2014) &quot;Similar is not the same: differences in the function of the (hemi-)cellulolytic regulator XlnR (Xlr1/Xyr1) in filamentous fungi.&quot; <i>Fungal Genet Biol</i> <b>72</b>:73&ndash;81; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25064064 25064064]; doi: [https://dx.doi.org/10.1016/j.fgb.2014.07.007 10.1016/j.fgb.2014.07.007]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25064064 40].
 +
#Putker M, Vos HR, van Dorenmalen K, de Ruiter H, Duran AG, Snel B, Burgering BM, Vermeulen M, Dansen TB,  (2015) &quot;Evolutionary acquisition of cysteines determines FOXO paralog-specific redox signaling.&quot; <i>Antioxid Redox Signal</i> <b>22</b>(1):15&ndash;28; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25069953 25069953]; doi: [https://dx.doi.org/10.1089/ars.2014.6056 10.1089/ars.2014.6056]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25069953 41].
 +
#Dephoure N, Hwang S, O&#39;Sullivan C, Dodgson SE, Gygi SP, Amon A, Torres EM,  (2014) &quot;Quantitative proteomic analysis reveals posttranslational responses to aneuploidy in yeast.&quot; <i>Elife</i> <b>3</b>:e03023; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25073701 25073701]; doi: [https://dx.doi.org/10.7554/eLife.03023 10.7554/eLife.03023]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25073701 10].
 +
#Yang W, Ramachandran A, You S, Jeong H, Morley S, Mulone MD, Logvinenko T, Kim J, Hwang D, Freeman MR, Adam RM,  (2014) &quot;Integration of proteomic and transcriptomic profiles identifies a novel PDGF-MYC network in human smooth muscle cells.&quot; <i>Cell Commun Signal</i> <b>12</b>:44; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25080971 25080971]; doi: [https://dx.doi.org/10.1186/s12964-014-0044-z 10.1186/s12964-014-0044-z]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25080971 30].
 +
#Labas V, Grasseau I, Cahier K, Gargaros A, Harichaux G, Teixeira-Gomes AP, Alves S, Bourin M, G&eacute;rard N, Blesbois E,  (2015) &quot;Qualitative and quantitative peptidomic and proteomic approaches to phenotyping chicken semen.&quot; <i>J Proteomics</i> <b>112</b>:313&ndash;35; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25086240 25086240]; doi: [https://dx.doi.org/10.1016/j.jprot.2014.07.024 10.1016/j.jprot.2014.07.024]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25086240 44].
 +
#Berlin C, Kowalewski DJ, Schuster H, Mirza N, Walz S, Handel M, Schmid-Horch B, Salih HR, Kanz L, Rammensee HG, Stevanovi&#x107; S, Stickel JS,  (2015) &quot;Mapping the HLA ligandome landscape of acute myeloid leukemia: a targeted approach toward peptide-based immunotherapy.&quot; <i>Leukemia</i> <b>29</b>(3):647&ndash;59; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25092142 25092142]; doi: [https://dx.doi.org/10.1038/leu.2014.233 10.1038/leu.2014.233]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25092142 146].
 +
#Alqahtani A, Heesom K, Bramson JL, Curiel D, Ugai H, Matthews DA,  (2014) &quot;Analysis of purified wild type and mutant adenovirus particles by SILAC based quantitative proteomics.&quot; <i>J Gen Virol</i> <b>95</b>(Pt 11):2504&ndash;11; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25096814 25096814]; doi: [https://dx.doi.org/10.1099/vir.0.068221-0 10.1099/vir.0.068221-0]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25096814 22].
 +
#Jin L, Huo Y, Zheng Z, Jiang X, Deng H, Chen Y, Lian Q, Ge R, Deng H,  (2014) &quot;Down-regulation of Ras-related protein Rab 5C-dependent endocytosis and glycolysis in cisplatin-resistant ovarian cancer cell lines.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(11):3138&ndash;51; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25096996 25096996]; doi: [https://dx.doi.org/10.1074/mcp.M113.033217 10.1074/mcp.M113.033217]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25096996 11].
 +
#Zhang B, Pirmoradian M, Chernobrovkin A, Zubarev RA,  (2014) &quot;DeMix workflow for efficient identification of cofragmented peptides in high resolution data-dependent tandem mass spectrometry.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(11):3211&ndash;23; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25100859 25100859]; doi: [https://dx.doi.org/10.1074/mcp.O114.038877 10.1074/mcp.O114.038877]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25100859 7].
 +
#Wallin MT, Oh U, Nyalwidhe J, Semmes J, Kislinger T, Coffman P, Kurtzke JF, Jacobson S,  (2015) &quot;Serum proteomic analysis of a pre-symptomatic multiple sclerosis cohort.&quot; <i>Eur J Neurol</i> <b>22</b>(3):591&ndash;9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25104396 25104396]; doi: [https://dx.doi.org/10.1111/ene.12534 10.1111/ene.12534]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25104396 104].
 +
#Perdomo D, A&iuml;t-Ammar N, Syan S, Sachse M, Jhingan GD, Guill&eacute;n N,  (2015) &quot;Cellular and proteomics analysis of the endomembrane system from the unicellular Entamoeba histolytica.&quot; <i>J Proteomics</i> <b>112</b>:125&ndash;40; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25109464 25109464]; doi: [https://dx.doi.org/10.1016/j.jprot.2014.07.034 10.1016/j.jprot.2014.07.034]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25109464 3].
 +
#Talman AM, Prieto JH, Marques S, Ubaida-Mohien C, Lawniczak M, Wass MN, Xu T, Frank R, Ecker A, Stanway RS, Krishna S, Sternberg MJ, Christophides GK, Graham DR, Dinglasan RR, Yates JR 3rd, Sinden RE,  (2014) &quot;Proteomic analysis of the Plasmodium male gamete reveals the key role for glycolysis in flagellar motility.&quot; <i>Malar J</i> <b>13</b>:315; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25124718 25124718]; doi: [https://dx.doi.org/10.1186/1475-2875-13-315 10.1186/1475-2875-13-315]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25124718 3].
 +
#Carvalho AS, Ribeiro H, Voabil P, Penque D, Jensen ON, Molina H, Matthiesen R,  (2014) &quot;Global mass spectrometry and transcriptomics array based drug profiling provides novel insight into glucosamine induced endoplasmic reticulum stress.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(12):3294&ndash;307; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25128556 25128556]; doi: [https://dx.doi.org/10.1074/mcp.M113.034363 10.1074/mcp.M113.034363]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25128556 18].
 +
#Surmann K, Michalik S, Hildebrandt P, Gierok P, Depke M, Brinkmann L, Bernhardt J, Salazar MG, Sun Z, Shteynberg D, Kusebauch U, Moritz RL, Wollscheid B, Lalk M, V&ouml;lker U, Schmidt F,  (2014) &quot;Comparative proteome analysis reveals conserved and specific adaptation patterns of Staphylococcus aureus after internalization by different types of human non-professional phagocytic host cells.&quot; <i>Front Microbiol</i> <b>5</b>:392; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25136337 25136337]; doi: [https://dx.doi.org/10.3389/fmicb.2014.00392 10.3389/fmicb.2014.00392]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25136337 71].
 +
#Worboys JD, Sinclair J, Yuan Y, J&oslash;rgensen C,  (2014) &quot;Systematic evaluation of quantotypic peptides for targeted analysis of the human kinome.&quot; <i>Nat Methods</i> <b>11</b>(10):1041&ndash;4; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25152083 25152083]; doi: [https://dx.doi.org/10.1038/nmeth.3072 10.1038/nmeth.3072]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25152083 12].
 +
#Moczulska KE, Pichler P, Schutzbier M, Schleiffer A, Rumpel S, Mechtler K,  (2014) &quot;Deep and precise quantification of the mouse synaptosomal proteome reveals substantial remodeling during postnatal maturation.&quot; <i>J Proteome Res</i> <b>13</b>(10):4310&ndash;24; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25157418 25157418]; doi: [https://dx.doi.org/10.1021/pr500456t 10.1021/pr500456t]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25157418 100].
 +
#Han D, Jin J, Yu J, Kim K, Kim Y,  (2015) &quot;Integrated approach using multistep enzyme digestion, TiO2 enrichment, and database search for in-depth phosphoproteomic profiling.&quot; <i>Proteomics</i> <b>15</b>(2-3):618&ndash;23; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25159016 25159016]; doi: [https://dx.doi.org/10.1002/pmic.201400102 10.1002/pmic.201400102]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25159016 36].
 +
#Sharma K, D&#39;Souza RC, Tyanova S, Schaab C, Wi&#x15B;niewski JR, Cox J, Mann M,  (2014) &quot;Ultradeep human phosphoproteome reveals a distinct regulatory nature of Tyr and Ser/Thr-based signaling.&quot; <i>Cell Rep</i> <b>8</b>(5):1583&ndash;94; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25159151 25159151]; doi: [https://dx.doi.org/10.1016/j.celrep.2014.07.036 10.1016/j.celrep.2014.07.036]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25159151 276].
 +
#Bennike T, Ayturk U, Haslauer CM, Froehlich JW, Proffen BL, Barnaby O, Birkelund S, Murray MM, Warman ML, Stensballe A, Steen H,  (2014) &quot;A normative study of the synovial fluid proteome from healthy porcine knee joints.&quot; <i>J Proteome Res</i> <b>13</b>(10):4377&ndash;87; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25160569 25160569]; doi: [https://dx.doi.org/10.1021/pr500587x 10.1021/pr500587x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25160569 57].
 +
#Reinartz M, Raupach A, Kaisers W, G&ouml;decke A,  (2014) &quot;AKT1 and AKT2 induce distinct phosphorylation patterns in HL-1 cardiac myocytes.&quot; <i>J Proteome Res</i> <b>13</b>(10):4232&ndash;45; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25162660 25162660]; doi: [https://dx.doi.org/10.1021/pr500131g 10.1021/pr500131g]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25162660 8].
 +
#Dyrlund TF, Kirkegaard K, Poulsen ET, Sanggaard KW, Hindkj&aelig;r JJ, Kjems J, Enghild JJ, Ingerslev HJ,  (2014) &quot;Unconditioned commercial embryo culture media contain a large variety of non-declared proteins: a comprehensive proteomics analysis.&quot; <i>Hum Reprod</i> <b>29</b>(11):2421&ndash;30; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25164020 25164020]; doi: [https://dx.doi.org/10.1093/humrep/deu220 10.1093/humrep/deu220]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25164020 63].
 +
#Yang J, Gupta V, Carroll KS, Liebler DC,  (2014) &quot;Site-specific mapping and quantification of protein S-sulphenylation in cells.&quot; <i>Nat Commun</i> <b>5</b>:4776; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25175731 25175731]; doi: [https://dx.doi.org/10.1038/ncomms5776 10.1038/ncomms5776]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25175731 24].
 +
#Liao BM, Raddatz K, Zhong L, Parker BL, Raftery MJ, Schmitz-Peiffer C,  (2014) &quot;Proteomic analysis of livers from fat-fed mice deficient in either PKC&delta; or PKC&epsilon; identifies Htatip2 as a regulator of lipid metabolism.&quot; <i>Proteomics</i> <b>14</b>(21-22):2578&ndash;87; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25175814 25175814]; doi: [https://dx.doi.org/10.1002/pmic.201400202 10.1002/pmic.201400202]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25175814 222].
 +
#Van den Bossche A, Ceyssens PJ, De Smet J, Hendrix H, Bellon H, Leimer N, Wagemans J, Delattre AS, Cenens W, Aertsen A, Landuyt B, Minakhin L, Severinov K, Noben JP, Lavigne R,  (2014) &quot;Systematic identification of hypothetical bacteriophage proteins targeting key protein complexes of Pseudomonas aeruginosa.&quot; <i>J Proteome Res</i> <b>13</b>(10):4446&ndash;56; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25185497 25185497]; doi: [https://dx.doi.org/10.1021/pr500796n 10.1021/pr500796n]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25185497 600].
 +
#Hornburg D, Drepper C, Butter F, Meissner F, Sendtner M, Mann M,  (2014) &quot;Deep proteomic evaluation of primary and cell line motoneuron disease models delineates major differences in neuronal characteristics.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(12):3410&ndash;20; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25193168 25193168]; doi: [https://dx.doi.org/10.1074/mcp.M113.037291 10.1074/mcp.M113.037291]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25193168 29].
 +
#Wang X, Li Y, Wu Z, Wang H, Tan H, Peng J,  (2014) &quot;JUMP: a tag-based database search tool for peptide identification with high sensitivity and accuracy.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(12):3663&ndash;73; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25202125 25202125]; doi: [https://dx.doi.org/10.1074/mcp.O114.039586 10.1074/mcp.O114.039586]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25202125 13].
 +
#Zeiler M, Moser M, Mann M,  (2014) &quot;Copy number analysis of the murine platelet proteome spanning the complete abundance range.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(12):3435&ndash;45; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25205226 25205226]; doi: [https://dx.doi.org/10.1074/mcp.M114.038513 10.1074/mcp.M114.038513]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25205226 9].
 +
#Chocu S, Evrard B, Lavigne R, Rolland AD, Aubry F, J&eacute;gou B, Chalmel F, Pineau C,  (2014) &quot;Forty-four novel protein-coding loci discovered using a proteomics informed by transcriptomics (PIT) approach in rat male germ cells.&quot; <i>Biol Reprod</i> <b>91</b>(5):123; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25210130 25210130]; doi: [https://dx.doi.org/10.1095/biolreprod.114.122416 10.1095/biolreprod.114.122416]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25210130 6].
 +
#Frenk S, Oxley D, Houseley J,  (2014) &quot;The nuclear exosome is active and important during budding yeast meiosis.&quot; <i>PLoS One</i> <b>9</b>(9):e107648; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25210768 25210768]; doi: [https://dx.doi.org/10.1371/journal.pone.0107648 10.1371/journal.pone.0107648]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25210768 12].
 +
#Laouami S, Clair G, Armengaud J, Duport C,  (2014) &quot;Proteomic evidences for rex regulation of metabolism in toxin-producing Bacillus cereus ATCC 14579.&quot; <i>PLoS One</i> <b>9</b>(9):e107354; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25216269 25216269]; doi: [https://dx.doi.org/10.1371/journal.pone.0107354 10.1371/journal.pone.0107354]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25216269 12].
 +
#Shin J, Kim HJ, Kim G, Song M, Woo SJ, Lee ST, Kim H, Lee C,  (2014) &quot;Discovery of melanotransferrin as a serological marker of colorectal cancer by secretome analysis and quantitative proteomics.&quot; <i>J Proteome Res</i> <b>13</b>(11):4919&ndash;31; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25216327 25216327]; doi: [https://dx.doi.org/10.1021/pr500790f 10.1021/pr500790f]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25216327 34].
 +
#Hendriks IA, D&#39;Souza RC, Yang B, Verlaan-de Vries M, Mann M, Vertegaal AC,  (2014) &quot;Uncovering global SUMOylation signaling networks in a site-specific manner.&quot; <i>Nat Struct Mol Biol</i> <b>21</b>(10):927&ndash;36; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25218447 25218447]; doi: [https://dx.doi.org/10.1038/nsmb.2890 10.1038/nsmb.2890]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25218447 32].
 +
#Wiese H, Gelis L, Wiese S, Reichenbach C, Jovancevic N, Osterloh M, Meyer HE, Neuhaus EM, Hatt HH, Radziwill G, Warscheid B,  (2015) &quot;Quantitative phosphoproteomics reveals the protein tyrosine kinase Pyk2 as a central effector of olfactory receptor signaling in prostate cancer cells.&quot; <i>Biochim Biophys Acta</i> <b>1854</b>(6):632&ndash;40; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25219547 25219547]; doi: [https://dx.doi.org/10.1016/j.bbapap.2014.09.002 10.1016/j.bbapap.2014.09.002]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25219547 191].
 +
#Negroni L, Taouji S, Arma D, Pallares-Lupon N, Leong K, Beausang LA, Latterich M, Boss&eacute; R, Balabaud C, Schmitter JM, Bioulac-Sage P, Zucman-Rossi J, Rosenbaum J, Chevet E,  (2014) &quot;Integrative quantitative proteomics unveils proteostasis imbalance in human hepatocellular carcinoma developed on nonfibrotic livers.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(12):3473&ndash;83; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25225353 25225353]; doi: [https://dx.doi.org/10.1074/mcp.M114.043174 10.1074/mcp.M114.043174]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25225353 8].
 +
#Wi&#x15B;niewski JR, Hein MY, Cox J, Mann M,  (2014) &quot;A &quot;proteomic ruler&quot; for protein copy number and concentration estimation without spike-in standards.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(12):3497&ndash;506; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25225357 25225357]; doi: [https://dx.doi.org/10.1074/mcp.M113.037309 10.1074/mcp.M113.037309]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25225357 69].
 +
#Adachi J, Kishida M, Watanabe S, Hashimoto Y, Fukamizu K, Tomonaga T,  (2014) &quot;Proteome-wide discovery of unknown ATP-binding proteins and kinase inhibitor target proteins using an ATP probe.&quot; <i>J Proteome Res</i> <b>13</b>(12):5461&ndash;70; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25230287 25230287]; doi: [https://dx.doi.org/10.1021/pr500845u 10.1021/pr500845u]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25230287 37].
 +
#Alli Shaik A, Wee S, Li RH, Li Z, Carney TJ, Mathavan S, Gunaratne J,  (2014) &quot;Functional mapping of the zebrafish early embryo proteome and transcriptome.&quot; <i>J Proteome Res</i> <b>13</b>(12):5536&ndash;50; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25230361 25230361]; doi: [https://dx.doi.org/10.1021/pr5005136 10.1021/pr5005136]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25230361 24].
 +
#Tape CJ, Worboys JD, Sinclair J, Gourlay R, Vogt J, McMahon KM, Trost M, Lauffenburger DA, Lamont DJ, J&oslash;rgensen C,  (2014) &quot;Reproducible automated phosphopeptide enrichment using magnetic TiO2 and Ti-IMAC.&quot; <i>Anal Chem</i> <b>86</b>(20):10296&ndash;302; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25233145 25233145]; doi: [https://dx.doi.org/10.1021/ac5025842 10.1021/ac5025842]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25233145 103].
 +
#Groessl M, Slany A, Bileck A, Gloessmann K, Kreutz D, Jaeger W, Pfeiler G, Gerner C,  (2014) &quot;Proteome profiling of breast cancer biopsies reveals a wound healing signature of cancer-associated fibroblasts.&quot; <i>J Proteome Res</i> <b>13</b>(11):4773&ndash;82; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25238572 25238572]; doi: [https://dx.doi.org/10.1021/pr500727h 10.1021/pr500727h]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25238572 281].
 +
#Song Z, Chen L, Wang J, Lu Y, Jiang W, Zhang W,  (2014) &quot;A transcriptional regulator Sll0794 regulates tolerance to biofuel ethanol in photosynthetic Synechocystis sp. PCC 6803.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(12):3519&ndash;32; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25239498 25239498]; doi: [https://dx.doi.org/10.1074/mcp.M113.035675 10.1074/mcp.M113.035675]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25239498 21].
 +
#Schwenk J, Baehrens D, Haupt A, Bildl W, Boudkkazi S, Roeper J, Fakler B, Schulte U,  (2014) &quot;Regional diversity and developmental dynamics of the AMPA-receptor proteome in the mammalian brain.&quot; <i>Neuron</i> <b>84</b>(1):41&ndash;54; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25242221 25242221]; doi: [https://dx.doi.org/10.1016/j.neuron.2014.08.044 10.1016/j.neuron.2014.08.044]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25242221 95].
 +
#Wu X, Renuse S, Sahasrabuddhe NA, Zahari MS, Chaerkady R, Kim MS, Nirujogi RS, Mohseni M, Kumar P, Raju R, Zhong J, Yang J, Neiswinger J, Jeong JS, Newman R, Powers MA, Somani BL, Gabrielson E, Sukumar S, Stearns V, Qian J, Zhu H, Vogelstein B, Park BH, Pandey A,  (2014) &quot;Activation of diverse signalling pathways by oncogenic PIK3CA mutations.&quot; <i>Nat Commun</i> <b>5</b>:4961; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25247763 25247763]; doi: [https://dx.doi.org/10.1038/ncomms5961 10.1038/ncomms5961]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25247763 91].
 +
#van der Lelij P, Stocsits RR, Ladurner R, Petzold G, Kreidl E, Koch B, Schmitz J, Neumann B, Ellenberg J, Peters JM,  (2014) &quot;SNW1 enables sister chromatid cohesion by mediating the splicing of sororin and APC2 pre-mRNAs.&quot; <i>EMBO J</i> <b>33</b>(22):2643&ndash;58; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25257309 25257309]; doi: [https://dx.doi.org/10.15252/embj.201488202 10.15252/embj.201488202]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25257309 2].
 +
#Cortes LK, Vainauskas S, Dai N, McClung CM, Shah M, Benner JS, Corr&ecirc;a IR Jr, VerBerkmoes NC, Taron CH,  (2014) &quot;Proteomic identification of mammalian cell surface derived glycosylphosphatidylinositol-anchored proteins through selective glycan enrichment.&quot; <i>Proteomics</i> <b>14</b>(21-22):2471&ndash;84; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25262930 25262930]; doi: [https://dx.doi.org/10.1002/pmic.201400148 10.1002/pmic.201400148]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25262930 36].
 +
#Zhong J, Martinez M, Sengupta S, Lee A, Wu X, Chaerkady R, Chatterjee A, O&#39;Meally RN, Cole RN, Pandey A, Zachara NE,  (2015) &quot;Quantitative phosphoproteomics reveals crosstalk between phosphorylation and O-GlcNAc in the DNA damage response pathway.&quot; <i>Proteomics</i> <b>15</b>(2-3):591&ndash;607; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25263469 25263469]; doi: [https://dx.doi.org/10.1002/pmic.201400339 10.1002/pmic.201400339]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25263469 6].
 +
#Navarro MN, Goebel J, Hukelmann JL, Cantrell DA,  (2014) &quot;Quantitative phosphoproteomics of cytotoxic T cells to reveal protein kinase d 2 regulated networks.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(12):3544&ndash;57; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25266776 25266776]; doi: [https://dx.doi.org/10.1074/mcp.M113.037242 10.1074/mcp.M113.037242]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25266776 274].
 +
#Zhang G, Bowling H, Hom N, Kirshenbaum K, Klann E, Chao MV, Neubert TA,  (2014) &quot;In-depth quantitative proteomic analysis of de novo protein synthesis induced by brain-derived neurotrophic factor.&quot; <i>J Proteome Res</i> <b>13</b>(12):5707&ndash;14; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25271054 25271054]; doi: [https://dx.doi.org/10.1021/pr5006982 10.1021/pr5006982]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25271054 8].
 +
#Shender VO, Pavlyukov MS, Ziganshin RH, Arapidi GP, Kovalchuk SI, Anikanov NA, Altukhov IA, Alexeev DG, Butenko IO, Shavarda AL, Khomyakova EB, Evtushenko E, Ashrafyan LA, Antonova IB, Kuznetcov IN, Gorbachev AY, Shakhparonov MI, Govorun VM,  (2014) &quot;Proteome-metabolome profiling of ovarian cancer ascites reveals novel components involved in intercellular communication.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(12):3558&ndash;71; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25271300 25271300]; doi: [https://dx.doi.org/10.1074/mcp.M114.041194 10.1074/mcp.M114.041194]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25271300 17].
 +
#Savitski MM, Reinhard FB, Franken H, Werner T, Savitski MF, Eberhard D, Martinez Molina D, Jafari R, Dovega RB, Klaeger S, Kuster B, Nordlund P, Bantscheff M, Drewes G,  (2014) &quot;Tracking cancer drugs in living cells by thermal profiling of the proteome.&quot; <i>Science</i> <b>346</b>(6205):1255784; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25278616 25278616]; doi: [https://dx.doi.org/10.1126/science.1255784 10.1126/science.1255784]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25278616 403].
 +
#Handtke S, Volland S, Methling K, Albrecht D, Becher D, Nehls J, Bongaerts J, Maurer KH, Lalk M, Liesegang H, Voigt B, Daniel R, Hecker M,  (2014) &quot;Cell physiology of the biotechnological relevant bacterium Bacillus pumilus-an omics-based approach.&quot; <i>J Biotechnol</i> <b>192 Pt A</b>:204&ndash;14; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25281541 25281541]; doi: [https://dx.doi.org/10.1016/j.jbiotec.2014.08.028 10.1016/j.jbiotec.2014.08.028]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25281541 120].
 +
#Bhargava M, Becker TL, Viken KJ, Jagtap PD, Dey S, Steinbach MS, Wu B, Kumar V, Bitterman PB, Ingbar DH, Wendt CH,  (2014) &quot;Proteomic profiles in acute respiratory distress syndrome differentiates survivors from non-survivors.&quot; <i>PLoS One</i> <b>9</b>(10):e109713; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25290099 25290099]; doi: [https://dx.doi.org/10.1371/journal.pone.0109713 10.1371/journal.pone.0109713]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25290099 15].
 +
#Qi L, Liu Z, Wang J, Cui Y, Guo Y, Zhou T, Zhou Z, Guo X, Xue Y, Sha J,  (2014) &quot;Systematic analysis of the phosphoproteome and kinase-substrate networks in the mouse testis.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(12):3626&ndash;38; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25293948 25293948]; doi: [https://dx.doi.org/10.1074/mcp.M114.039073 10.1074/mcp.M114.039073]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25293948 59].
 +
#Tan H, Wu Z, Wang H, Bai B, Li Y, Wang X, Zhai B, Beach TG, Peng J,  (2015) &quot;Refined phosphopeptide enrichment by phosphate additive and the analysis of human brain phosphoproteome.&quot; <i>Proteomics</i> <b>15</b>(2-3):500&ndash;7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25307156 25307156]; doi: [https://dx.doi.org/10.1002/pmic.201400171 10.1002/pmic.201400171]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25307156 3].
 +
#Carney KE, Milanese M, van Nierop P, Li KW, Oliet SH, Smit AB, Bonanno G, Verheijen MH,  (2014) &quot;Proteomic analysis of gliosomes from mouse brain: identification and investigation of glial membrane proteins.&quot; <i>J Proteome Res</i> <b>13</b>(12):5918&ndash;27; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25308431 25308431]; doi: [https://dx.doi.org/10.1021/pr500829z 10.1021/pr500829z]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25308431 42].
 +
#Yin X, Sakata K, Komatsu S,  (2014) &quot;Phosphoproteomics reveals the effect of ethylene in soybean root under flooding stress.&quot; <i>J Proteome Res</i> <b>13</b>(12):5618&ndash;34; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25316100 25316100]; doi: [https://dx.doi.org/10.1021/pr500621c 10.1021/pr500621c]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25316100 54].
 +
#Gopinath RK, You ST, Chien KY, Swamy KB, Yu JS, Schuyler SC, Leu JY,  (2014) &quot;The Hsp90-dependent proteome is conserved and enriched for hub proteins with high levels of protein-protein connectivity.&quot; <i>Genome Biol Evol</i> <b>6</b>(10):2851&ndash;65; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25316598 25316598]; doi: [https://dx.doi.org/10.1093/gbe/evu226 10.1093/gbe/evu226]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25316598 2].
 +
#Herbst FA, S&oslash;ndergaard MT, Kjeldal H, Stensballe A, Nielsen PH, Dueholm MS,  (2015) &quot;Major proteomic changes associated with amyloid-induced biofilm formation in Pseudomonas aeruginosa PAO1.&quot; <i>J Proteome Res</i> <b>14</b>(1):72&ndash;81; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25317949 25317949]; doi: [https://dx.doi.org/10.1021/pr500938x 10.1021/pr500938x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25317949 282].
 +
#Syed N, Chavan S, Sahasrabuddhe NA, Renuse S, Sathe G, Nanjappa V, Radhakrishnan A, Raja R, Pinto SM, Srinivasan A, Prasad TS, Srikumar K, Gowda H, Santosh V, Sidransky D, Califano JA, Pandey A, Chatterjee A,  (2015) &quot;Silencing of high-mobility group box 2 (HMGB2) modulates cisplatin and 5-fluorouracil sensitivity in head and neck squamous cell carcinoma.&quot; <i>Proteomics</i> <b>15</b>(2-3):383&ndash;93; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25327479 25327479]; doi: [https://dx.doi.org/10.1002/pmic.201400338 10.1002/pmic.201400338]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25327479 1].
 +
#Helgeland E, Breivik LE, Vaudel M, Svendsen &Oslash;S, Garberg H, Nordrehaug JE, Berven FS, Jonassen AK,  (2014) &quot;Exploring the human plasma proteome for humoral mediators of remote ischemic preconditioning--a word of caution.&quot; <i>PLoS One</i> <b>9</b>(10):e109279; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25333471 25333471]; doi: [https://dx.doi.org/10.1371/journal.pone.0109279 10.1371/journal.pone.0109279]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25333471 146].
 +
#Batth TS, Francavilla C, Olsen JV,  (2014) &quot;Off-line high-pH reversed-phase fractionation for in-depth phosphoproteomics.&quot; <i>J Proteome Res</i> <b>13</b>(12):6176&ndash;86; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25338131 25338131]; doi: [https://dx.doi.org/10.1021/pr500893m 10.1021/pr500893m]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25338131 11].
 +
#Fang NN, Chan GT, Zhu M, Comyn SA, Persaud A, Deshaies RJ, Rotin D, Gsponer J, Mayor T,  (2014) &quot;Rsp5/Nedd4 is the main ubiquitin ligase that targets cytosolic misfolded proteins following heat stress.&quot; <i>Nat Cell Biol</i> <b>16</b>(12):1227&ndash;37; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25344756 25344756]; doi: [https://dx.doi.org/10.1038/ncb3054 10.1038/ncb3054]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25344756 9].
 +
#Renuse S, Madugundu AK, Kumar P, Nair BG, Gowda H, Prasad TS, Pandey A,  (2014) &quot;Proteomic analysis and genome annotation of Pichia pastoris, a recombinant protein expression host.&quot; <i>Proteomics</i> <b>14</b>(23-24):2769&ndash;79; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25346215 25346215]; doi: [https://dx.doi.org/10.1002/pmic.201400267 10.1002/pmic.201400267]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25346215 105].
 +
#Marino F, Cristobal A, Binai NA, Bache N, Heck AJ, Mohammed S,  (2014) &quot;Characterization and usage of the EASY-spray technology as part of an online 2D SCX-RP ultra-high pressure system.&quot; <i>Analyst</i> <b>139</b>(24):6520&ndash;8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25346955 25346955]; doi: [https://dx.doi.org/10.1039/c4an01568a 10.1039/c4an01568a]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25346955 38].
 +
#Bileck A, Kreutz D, Muqaku B, Slany A, Gerner C,  (2014) &quot;Comprehensive assessment of proteins regulated by dexamethasone reveals novel effects in primary human peripheral blood mononuclear cells.&quot; <i>J Proteome Res</i> <b>13</b>(12):5989&ndash;6000; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25347463 25347463]; doi: [https://dx.doi.org/10.1021/pr5008625 10.1021/pr5008625]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25347463 48].
 +
#Kelstrup CD, Jersie-Christensen RR, Batth TS, Arrey TN, Kuehn A, Kellmann M, Olsen JV,  (2014) &quot;Rapid and deep proteomes by faster sequencing on a benchtop quadrupole ultra-high-field Orbitrap mass spectrometer.&quot; <i>J Proteome Res</i> <b>13</b>(12):6187&ndash;95; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25349961 25349961]; doi: [https://dx.doi.org/10.1021/pr500985w 10.1021/pr500985w]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25349961 36].
 +
#Huang TC, Renuse S, Pinto S, Kumar P, Yang Y, Chaerkady R, Godsey B, Mendell JT, Halushka MK, Civin CI, Marchionni L, Pandey A,  (2015) &quot;Identification of miR-145 targets through an integrated omics analysis.&quot; <i>Mol Biosyst</i> <b>11</b>(1):197&ndash;207; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25354783 25354783]; doi: [https://dx.doi.org/10.1039/c4mb00585f 10.1039/c4mb00585f]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25354783 10].
 +
#Hughes CS, Foehr S, Garfield DA, Furlong EE, Steinmetz LM, Krijgsveld J,  (2014) &quot;Ultrasensitive proteome analysis using paramagnetic bead technology.&quot; <i>Mol Syst Biol</i> <b>10</b>:757; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25358341 25358341]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25358341 163].
 +
#Yang YS, Fernandez B, Lagorce A, Aloin V, De Guillen KM, Boyer JB, Dedieu A, Confalonieri F, Armengaud J, Roumestand C,  (2015) &quot;Prioritizing targets for structural biology through the lens of proteomics: the archaeal protein TGAM_1934 from Thermococcus gammatolerans.&quot; <i>Proteomics</i> <b>15</b>(1):114&ndash;23; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25359407 25359407]; doi: [https://dx.doi.org/10.1002/pmic.201300535 10.1002/pmic.201300535]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25359407 4].
 +
#Scheltema RA, Hauschild JP, Lange O, Hornburg D, Denisov E, Damoc E, Kuehn A, Makarov A, Mann M,  (2014) &quot;The Q Exactive HF, a Benchtop mass spectrometer with a pre-filter, high-performance quadrupole and an ultra-high-field Orbitrap analyzer.&quot; <i>Mol Cell Proteomics</i> <b>13</b>(12):3698&ndash;708; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25360005 25360005]; doi: [https://dx.doi.org/10.1074/mcp.M114.043489 10.1074/mcp.M114.043489]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25360005 99].
 +
#Mazin PV, Fisunov GY, Gorbachev AY, Kapitskaya KY, Altukhov IA, Semashko TA, Alexeev DG, Govorun VM,  (2014) &quot;Transcriptome analysis reveals novel regulatory mechanisms in a genome-reduced bacterium.&quot; <i>Nucleic Acids Res</i> <b>42</b>(21):13254&ndash;68; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25361977 25361977]; doi: [https://dx.doi.org/10.1093/nar/gku976 10.1093/nar/gku976]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25361977 12].
 +
#Keilhauer EC, Hein MY, Mann M,  (2015) &quot;Accurate protein complex retrieval by affinity enrichment mass spectrometry (AE-MS) rather than affinity purification mass spectrometry (AP-MS).&quot; <i>Mol Cell Proteomics</i> <b>14</b>(1):120&ndash;35; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25363814 25363814]; doi: [https://dx.doi.org/10.1074/mcp.M114.041012 10.1074/mcp.M114.041012]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25363814 196].
 +
#Bourderioux M, Nguyen-Khoa T, Chhuon C, Jeanson L, Tondelier D, Walczak M, Ollero M, Bekri S, Knebelmann B, Escudier E, Escudier B, Edelman A, Guerrera IC,  (2015) &quot;A new workflow for proteomic analysis of urinary exosomes and assessment in cystinuria patients.&quot; <i>J Proteome Res</i> <b>14</b>(1):567&ndash;77; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25365230 25365230]; doi: [https://dx.doi.org/10.1021/pr501003q 10.1021/pr501003q]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25365230 340].
 +
#Pinto SM, Nirujogi RS, Rojas PL, Patil AH, Manda SS, Subbannayya Y, Roa JC, Chatterjee A, Prasad TS, Pandey A,  (2015) &quot;Quantitative phosphoproteomic analysis of IL-33-mediated signaling.&quot; <i>Proteomics</i> <b>15</b>(2-3):532&ndash;44; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25367039 25367039]; doi: [https://dx.doi.org/10.1002/pmic.201400303 10.1002/pmic.201400303]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25367039 4].
 +
#Cube&ntilde;as-Potts C, Srikumar T, Lee C, Osula O, Subramonian D, Zhang XD, Cotter RJ, Raught B, Matunis MJ,  (2015) &quot;Identification of SUMO-2/3-modified proteins associated with mitotic chromosomes.&quot; <i>Proteomics</i> <b>15</b>(4):763&ndash;72; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25367092 25367092]; doi: [https://dx.doi.org/10.1002/pmic.201400400 10.1002/pmic.201400400]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25367092 8].
 +
#Pfeiffer MJ, Taher L, Drexler H, Suzuki Y, Maka&#x142;owski W, Schwarzer C, Wang B, Fuellen G, Boiani M,  (2015) &quot;Differences in embryo quality are associated with differences in oocyte composition: a proteomic study in inbred mice.&quot; <i>Proteomics</i> <b>15</b>(4):675&ndash;87; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25367296 25367296]; doi: [https://dx.doi.org/10.1002/pmic.201400334 10.1002/pmic.201400334]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25367296 4].
 +
#Lamoliatte F, Caron D, Durette C, Mahrouche L, Maroui MA, Caron-Lizotte O, Bonneil E, Chelbi-Alix MK, Thibault P,  (2014) &quot;Large-scale analysis of lysine SUMOylation by SUMO remnant immunoaffinity profiling.&quot; <i>Nat Commun</i> <b>5</b>:5409; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25391492 25391492]; doi: [https://dx.doi.org/10.1038/ncomms6409 10.1038/ncomms6409]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25391492 6].
 +
#Ruprecht B, Koch H, Medard G, Mundt M, Kuster B, Lemeer S,  (2015) &quot;Comprehensive and reproducible phosphopeptide enrichment using iron immobilized metal ion affinity chromatography (Fe-IMAC) columns.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(1):205&ndash;15; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25394399 25394399]; doi: [https://dx.doi.org/10.1074/mcp.M114.043109 10.1074/mcp.M114.043109]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25394399 152].
 +
#G&ouml;tzke H, Muheim C, Altelaar AF, Heck AJ, Maddalo G, Daley DO,  (2015) &quot;Identification of putative substrates for the periplasmic chaperone YfgM in Escherichia coli using quantitative proteomics.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(1):216&ndash;26; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25403562 25403562]; doi: [https://dx.doi.org/10.1074/mcp.M114.043216 10.1074/mcp.M114.043216]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25403562 9].
 +
#Nirujogi RS, Wright JD Jr, Manda SS, Zhong J, Na CH, Meyerhoff J, Benton B, Jabbour R, Willis K, Kim MS, Pandey A, Sekowski JW,  (2015) &quot;Phosphoproteomic analysis reveals compensatory effects in the piriform cortex of VX nerve agent exposed rats.&quot; <i>Proteomics</i> <b>15</b>(2-3):487&ndash;99; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25403869 25403869]; doi: [https://dx.doi.org/10.1002/pmic.201400371 10.1002/pmic.201400371]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25403869 12].
 +
#Sap KA, Bezstarosti K, Dekkers DH, van den Hout M, van Ijcken W, Rijkers E, Demmers JA,  (2015) &quot;Global quantitative proteomics reveals novel factors in the ecdysone signaling pathway in Drosophila melanogaster.&quot; <i>Proteomics</i> <b>15</b>(4):725&ndash;38; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25403936 25403936]; doi: [https://dx.doi.org/10.1002/pmic.201400308 10.1002/pmic.201400308]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25403936 8].
 +
#Zhang X, Belkina N, Jacob HK, Maity T, Biswas R, Venugopalan A, Shaw PG, Kim MS, Chaerkady R, Pandey A, Guha U,  (2015) &quot;Identifying novel targets of oncogenic EGF receptor signaling in lung cancer through global phosphoproteomics.&quot; <i>Proteomics</i> <b>15</b>(2-3):340&ndash;55; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25404012 25404012]; doi: [https://dx.doi.org/10.1002/pmic.201400315 10.1002/pmic.201400315]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25404012 73].
 +
#Loroch S, Zahedi RP, Sickmann A,  (2015) &quot;Highly sensitive phosphoproteomics by tailoring solid-phase extraction to electrostatic repulsion-hydrophilic interaction chromatography.&quot; <i>Anal Chem</i> <b>87</b>(3):1596&ndash;604; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25405705 25405705]; doi: [https://dx.doi.org/10.1021/ac502708m 10.1021/ac502708m]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25405705 84].
 +
#Chawade A, Sandin M, Teleman J, Malmstr&ouml;m J, Levander F,  (2015) &quot;Data processing has major impact on the outcome of quantitative label-free LC-MS analysis.&quot; <i>J Proteome Res</i> <b>14</b>(2):676&ndash;87; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25407311 25407311]; doi: [https://dx.doi.org/10.1021/pr500665j 10.1021/pr500665j]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25407311 12].
 +
#Zhang P, Dufresne C, Turner R, Ferri S, Venkatraman V, Karani R, Lutty GA, Van Eyk JE, Semba RD,  (2015) &quot;The proteome of human retina.&quot; <i>Proteomics</i> <b>15</b>(4):836&ndash;40; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25407473 25407473]; doi: [https://dx.doi.org/10.1002/pmic.201400397 10.1002/pmic.201400397]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25407473 60].
 +
#Gruber AR, Martin G, M&uuml;ller P, Schmidt A, Gruber AJ, Gumienny R, Mittal N, Jayachandran R, Pieters J, Keller W, van Nimwegen E, Zavolan M,  (2014) &quot;Global 3&#39; UTR shortening has a limited effect on protein abundance in proliferating T cells.&quot; <i>Nat Commun</i> <b>5</b>:5465; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25413384 25413384]; doi: [https://dx.doi.org/10.1038/ncomms6465 10.1038/ncomms6465]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25413384 13].
 +
#Huesgen PF, Lange PF, Rogers LD, Solis N, Eckhard U, Kleifeld O, Goulas T, Gomis-R&uuml;th FX, Overall CM,  (2015) &quot;LysargiNase mirrors trypsin for protein C-terminal and methylation-site identification.&quot; <i>Nat Methods</i> <b>12</b>(1):55&ndash;8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25419962 25419962]; doi: [https://dx.doi.org/10.1038/nmeth.3177 10.1038/nmeth.3177]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25419962 60].
 +
#Rinschen MM, Pahmeyer C, Pisitkun T, Schnell N, Wu X, Maa&szlig; M, Bartram MP, Lamkemeyer T, Schermer B, Benzing T, Brinkkoetter PT,  (2015) &quot;Comparative phosphoproteomic analysis of mammalian glomeruli reveals conserved podocin C-terminal phosphorylation as a determinant of slit diaphragm complex architecture.&quot; <i>Proteomics</i> <b>15</b>(7):1326&ndash;31; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25420462 25420462]; doi: [https://dx.doi.org/10.1002/pmic.201400235 10.1002/pmic.201400235]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25420462 40].
 +
#Li L, Wei Y, To C, Zhu CQ, Tong J, Pham NA, Taylor P, Ignatchenko V, Ignatchenko A, Zhang W, Wang D, Yanagawa N, Li M, Pintilie M, Liu G, Muthuswamy L, Shepherd FA, Tsao MS, Kislinger T, Moran MF,  (2014) &quot;Integrated omic analysis of lung cancer reveals metabolism proteome signatures with prognostic impact.&quot; <i>Nat Commun</i> <b>5</b>:5469; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25429762 25429762]; doi: [https://dx.doi.org/10.1038/ncomms6469 10.1038/ncomms6469]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25429762 33].
 +
#Hagen L, Sharma A, Aas PA, Slupphaug G,  (2015) &quot;Off-target responses in the HeLa proteome subsequent to transient plasmid-mediated transfection.&quot; <i>Biochim Biophys Acta</i> <b>1854</b>(1):84&ndash;90; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25448019 25448019]; doi: [https://dx.doi.org/10.1016/j.bbapap.2014.10.016 10.1016/j.bbapap.2014.10.016]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25448019 27].
 +
#Tummala KS, Gomes AL, Yilmaz M, Gra&ntilde;a O, Bakiri L, Ruppen I, Xim&eacute;nez-Emb&uacute;n P, Sheshappanavar V, Rodriguez-Justo M, Pisano DG, Wagner EF, Djouder N,  (2014) &quot;Inhibition of de novo NAD(+) synthesis by oncogenic URI causes liver tumorigenesis through DNA damage.&quot; <i>Cancer Cell</i> <b>26</b>(6):826&ndash;39; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25453901 25453901]; doi: [https://dx.doi.org/10.1016/j.ccell.2014.10.002 10.1016/j.ccell.2014.10.002]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25453901 46].
 +
#Guo Z, Neilson LJ, Zhong H, Murray PS, Zanivan S, Zaidel-Bar R,  (2014) &quot;E-cadherin interactome complexity and robustness resolved by quantitative proteomics.&quot; <i>Sci Signal</i> <b>7</b>(354):rs7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25468996 25468996]; doi: [https://dx.doi.org/10.1126/scisignal.2005473 10.1126/scisignal.2005473]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25468996 90].
 +
#Wi&#x15B;niewski JR, Koepsell H, Gizak A, Rakus D,  (2015) &quot;Absolute protein quantification allows differentiation of cell-specific metabolic routes and functions.&quot; <i>Proteomics</i> <b>15</b>(7):1316&ndash;25; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25475432 25475432]; doi: [https://dx.doi.org/10.1002/pmic.201400456 10.1002/pmic.201400456]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25475432 44].
 +
#Schnell G, Boeuf A, Jaulhac B, Boulanger N, Collin E, Barthel C, De Martino S, Ehret-Sabatier L,  (2015) &quot;Proteomic analysis of three Borrelia burgdorferi sensu lato native species and disseminating clones: relevance for Lyme vaccine design.&quot; <i>Proteomics</i> <b>15</b>(7):1280&ndash;90; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25475896 25475896]; doi: [https://dx.doi.org/10.1002/pmic.201400177 10.1002/pmic.201400177]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25475896 6].
 +
#Yang X, Liu F, Yan Y, Zhou T, Guo Y, Sun G, Zhou Z, Zhang W, Guo X, Sha J,  (2015) &quot;Proteomic analysis of N-glycosylation of human seminal plasma.&quot; <i>Proteomics</i> <b>15</b>(7):1255&ndash;8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25476145 25476145]; doi: [https://dx.doi.org/10.1002/pmic.201400203 10.1002/pmic.201400203]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25476145 3].
 +
#Binai NA, Marino F, Soendergaard P, Bache N, Mohammed S, Heck AJ,  (2015) &quot;Rapid analyses of proteomes and interactomes using an integrated solid-phase extraction-liquid chromatography-MS/MS system.&quot; <i>J Proteome Res</i> <b>14</b>(2):977&ndash;85; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25485597 25485597]; doi: [https://dx.doi.org/10.1021/pr501011z 10.1021/pr501011z]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25485597 71].
 +
#Vaga S, Bernardo-Faura M, Cokelaer T, Maiolica A, Barnes CA, Gillet LC, Hegemann B, van Drogen F, Sharifian H, Klipp E, Peter M, Saez-Rodriguez J, Aebersold R,  (2014) &quot;Phosphoproteomic analyses reveal novel cross-modulation mechanisms between two signaling pathways in yeast.&quot; <i>Mol Syst Biol</i> <b>10</b>:767; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25492886 25492886]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25492886 108].
 +
#Selvam RM, Nithya R, Devi PN, Shree RS, Nila MV, Demonte NL, Thangavel C, Maheshwari JJ, Lalitha P, Prajna NV, Dharmalingam K,  (2015) &quot;Exoproteome of Aspergillus flavus corneal isolates and saprophytes: identification of proteoforms of an oversecreted alkaline protease.&quot; <i>J Proteomics</i> <b>115</b>:23&ndash;35; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25497218 25497218]; doi: [https://dx.doi.org/10.1016/j.jprot.2014.11.017 10.1016/j.jprot.2014.11.017]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25497218 10].
 +
#Bergseng E, D&oslash;rum S, Arntzen M&Oslash;, Nielsen M, Nyg&aring;rd S, Buus S, de Souza GA, Sollid LM,  (2015) &quot;Different binding motifs of the celiac disease-associated HLA molecules DQ2.5, DQ2.2, and DQ7.5 revealed by relative quantitative proteomics of endogenous peptide repertoires.&quot; <i>Immunogenetics</i> <b>67</b>(2):73&ndash;84; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25502872 25502872]; doi: [https://dx.doi.org/10.1007/s00251-014-0819-9 10.1007/s00251-014-0819-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25502872 51].
 +
#Guo M, H&auml;rtlova A, Dill BD, Prescott AR, Gierli&#x144;ski M, Trost M,  (2015) &quot;High-resolution quantitative proteome analysis reveals substantial differences between phagosomes of RAW 264.7 and bone marrow derived macrophages.&quot; <i>Proteomics</i> <b>15</b>(18):3169&ndash;74; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25504905 25504905]; doi: [https://dx.doi.org/10.1002/pmic.201400431 10.1002/pmic.201400431]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25504905 6].
 +
#Gomes-Alves P, Serra M, Brito C, R-Borlado L, L&oacute;pez JA, V&aacute;zquez J, Carrondo MJ, Bernad A, Alves PM,  (2015) &quot;Exploring analytical proteomics platforms toward the definition of human cardiac stem cells receptome.&quot; <i>Proteomics</i> <b>15</b>(7):1332&ndash;7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25504917 25504917]; doi: [https://dx.doi.org/10.1002/pmic.201400318 10.1002/pmic.201400318]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25504917 2].
 +
#Baert Y, Stukenborg JB, Landreh M, De Kock J, J&ouml;rnvall H, S&ouml;der O, Goossens E,  (2015) &quot;Derivation and characterization of a cytocompatible scaffold from human testis.&quot; <i>Hum Reprod</i> <b>30</b>(2):256&ndash;67; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25505010 25505010]; doi: [https://dx.doi.org/10.1093/humrep/deu330 10.1093/humrep/deu330]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25505010 1].
 +
#Pel&aacute;ez-Garc&iacute;a A, Barderas R, Batlle R, Vi&ntilde;as-Castells R, Bartolom&eacute; RA, Torres S, Mendes M, Lopez-Lucendo M, Mazzolini R, Bonilla F, Garc&iacute;a de Herreros A, Casal JI,  (2015) &quot;A proteomic analysis reveals that Snail regulates the expression of the nuclear orphan receptor Nuclear Receptor Subfamily 2 Group F Member 6 (Nr2f6) and interleukin 17 (IL-17) to inhibit adipocyte differentiation.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(2):303&ndash;15; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25505127 25505127]; doi: [https://dx.doi.org/10.1074/mcp.M114.045328 10.1074/mcp.M114.045328]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25505127 2].
 +
#Gao L, Ge H, Huang X, Liu K, Zhang Y, Xu W, Wang Y,  (2015) &quot;Systematically ranking the tightness of membrane association for peripheral membrane proteins (PMPs).&quot; <i>Mol Cell Proteomics</i> <b>14</b>(2):340&ndash;53; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25505158 25505158]; doi: [https://dx.doi.org/10.1074/mcp.M114.044800 10.1074/mcp.M114.044800]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25505158 24].
 +
#Low TY, Peng M, Magliozzi R, Mohammed S, Guardavaccaro D, Heck AJ,  (2014) &quot;A systems-wide screen identifies substrates of the SCF&beta;TrCP ubiquitin ligase.&quot; <i>Sci Signal</i> <b>7</b>(356):rs8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25515538 25515538]; doi: [https://dx.doi.org/10.1126/scisignal.2005882 10.1126/scisignal.2005882]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25515538 120].
 +
#Park JJ, Wang H, Gargouri M, Deshpande RR, Skepper JN, Holguin FO, Juergens MT, Shachar-Hill Y, Hicks LM, Gang DR,  (2015) &quot;The response of Chlamydomonas reinhardtii to nitrogen deprivation: a systems biology analysis.&quot; <i>Plant J</i> <b>81</b>(4):611&ndash;24; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25515814 25515814]; doi: [https://dx.doi.org/10.1111/tpj.12747 10.1111/tpj.12747]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25515814 6].
 +
#Ferl RJ, Koh J, Denison F, Paul AL,  (2015) &quot;Spaceflight induces specific alterations in the proteomes of Arabidopsis.&quot; <i>Astrobiology</i> <b>15</b>(1):32&ndash;56; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25517942 25517942]; doi: [https://dx.doi.org/10.1089/ast.2014.1210 10.1089/ast.2014.1210]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25517942 15].
 +
#Mathias RA, Greco TM, Oberstein A, Budayeva HG, Chakrabarti R, Rowland EA, Kang Y, Shenk T, Cristea IM,  (2014) &quot;Sirtuin 4 is a lipoamidase regulating pyruvate dehydrogenase complex activity.&quot; <i>Cell</i> <b>159</b>(7):1615&ndash;25; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25525879 25525879]; doi: [https://dx.doi.org/10.1016/j.cell.2014.11.046 10.1016/j.cell.2014.11.046]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25525879 24].
 +
#Gueugneau M, Coudy-Gandilhon C, Gourbeyre O, Chambon C, Combaret L, Polge C, Taillandier D, Attaix D, Friguet B, Maier AB, Butler-Browne G, B&eacute;chet D,  (2014) &quot;Proteomics of muscle chronological ageing in post-menopausal women.&quot; <i>BMC Genomics</i> <b>15</b>:1165; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25532418 25532418]; doi: [https://dx.doi.org/10.1186/1471-2164-15-1165 10.1186/1471-2164-15-1165]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25532418 98].
 +
#Rotival M, Ko JH, Srivastava PK, Kerloc&#39;h A, Montoya A, Mauro C, Faull P, Cutillas PR, Petretto E, Behmoaras J,  (2015) &quot;Integrating phosphoproteome and transcriptome reveals new determinants of macrophage multinucleation.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(3):484&ndash;98; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25532521 25532521]; doi: [https://dx.doi.org/10.1074/mcp.M114.043836 10.1074/mcp.M114.043836]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25532521 15].
 +
#Hustedt N, Seeber A, Sack R, Tsai-Pflugfelder M, Bhullar B, Vlaming H, van Leeuwen F, Gu&eacute;nol&eacute; A, van Attikum H, Srivas R, Ideker T, Shimada K, Gasser SM,  (2015) &quot;Yeast PP4 interacts with ATR homolog Ddc2-Mec1 and regulates checkpoint signaling.&quot; <i>Mol Cell</i> <b>57</b>(2):273&ndash;89; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25533186 25533186]; doi: [https://dx.doi.org/10.1016/j.molcel.2014.11.016 10.1016/j.molcel.2014.11.016]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25533186 12].
 +
#Paster W, Bruger AM, Katsch K, Gr&eacute;goire C, Roncagalli R, Fu G, Gascoigne NR, Nika K, Cohnen A, Feller SM, Simister PC, Molder KC, Cordoba SP, Dushek O, Malissen B, Acuto O,  (2015) &quot;A THEMIS:SHP1 complex promotes T-cell survival.&quot; <i>EMBO J</i> <b>34</b>(3):393&ndash;409; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25535246 25535246]; doi: [https://dx.doi.org/10.15252/embj.201387725 10.15252/embj.201387725]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25535246 15].
 +
#Hubner NC, Nguyen LN, Hornig NC, Stunnenberg HG,  (2015) &quot;A quantitative proteomics tool to identify DNA-protein interactions in primary cells or blood.&quot; <i>J Proteome Res</i> <b>14</b>(2):1315&ndash;29; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25546135 25546135]; doi: [https://dx.doi.org/10.1021/pr5009515 10.1021/pr5009515]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25546135 82].
 +
#Chang HY, Li MH, Huang TC, Hsu CL, Tsai SR, Lee SC, Huang HC, Juan HF,  (2015) &quot;Quantitative proteomics reveals middle infrared radiation-interfered networks in breast cancer cells.&quot; <i>J Proteome Res</i> <b>14</b>(2):1250&ndash;62; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25556991 25556991]; doi: [https://dx.doi.org/10.1021/pr5011873 10.1021/pr5011873]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25556991 1].
 +
#Boj SF, Hwang CI, Baker LA, Chio II, Engle DD, Corbo V, Jager M, Ponz-Sarvise M, Tiriac H, Spector MS, Gracanin A, Oni T, Yu KH, van Boxtel R, Huch M, Rivera KD, Wilson JP, Feigin ME, &Ouml;hlund D, Handly-Santana A, Ardito-Abraham CM, Ludwig M, Elyada E, Alagesan B, Biffi G, Yordanov GN, Delcuze B, Creighton B, Wright K, Park Y, Morsink FH, Molenaar IQ, Borel Rinkes IH, Cuppen E, Hao Y, Jin Y, Nijman IJ, Iacobuzio-Donahue C, Leach SD, Pappin DJ, Hammell M, Klimstra DS, Basturk O, Hruban RH, Offerhaus GJ, Vries RG, Clevers H, Tuveson DA,  (2015) &quot;Organoid models of human and mouse ductal pancreatic cancer.&quot; <i>Cell</i> <b>160</b>(1-2):324&ndash;38; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25557080 25557080]; doi: [https://dx.doi.org/10.1016/j.cell.2014.12.021 10.1016/j.cell.2014.12.021]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25557080 4].
 +
#Selevsek N, Chang CY, Gillet LC, Navarro P, Bernhardt OM, Reiter L, Cheng LY, Vitek O, Aebersold R,  (2015) &quot;Reproducible and consistent quantification of the Saccharomyces cerevisiae proteome by SWATH-mass spectrometry.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(3):739&ndash;49; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25561506 25561506]; doi: [https://dx.doi.org/10.1074/mcp.M113.035550 10.1074/mcp.M113.035550]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25561506 46].
 +
#Fabre B, Lambour T, Garrigues L, Amalric F, Vigneron N, Menneteau T, Stella A, Monsarrat B, Van den Eynde B, Burlet-Schiltz O, Bousquet-Dubouch MP,  (2015) &quot;Deciphering preferential interactions within supramolecular protein complexes: the proteasome case.&quot; <i>Mol Syst Biol</i> <b>11</b>(1):771; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25561571 25561571]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25561571 84].
 +
#Kershaw CJ, Costello JL, Castelli LM, Talavera D, Rowe W, Sims PF, Ashe MP, Hubbard SJ, Pavitt GD, Grant CM,  (2015) &quot;The yeast La related protein Slf1p is a key activator of translation during the oxidative stress response.&quot; <i>PLoS Genet</i> <b>11</b>(1):e1004903; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25569619 25569619]; doi: [https://dx.doi.org/10.1371/journal.pgen.1004903 10.1371/journal.pgen.1004903]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25569619 20].
 +
#Zappacosta F, Scott GF, Huddleston MJ, Annan RS,  (2015) &quot;An optimized platform for hydrophilic interaction chromatography-immobilized metal affinity chromatography enables deep coverage of the rat liver phosphoproteome.&quot; <i>J Proteome Res</i> <b>14</b>(2):997&ndash;1009; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25575281 25575281]; doi: [https://dx.doi.org/10.1021/pr501025e 10.1021/pr501025e]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25575281 42].
 +
#Bassani-Sternberg M, Pletscher-Frankild S, Jensen LJ, Mann M,  (2015) &quot;Mass spectrometry of human leukocyte antigen class I peptidomes reveals strong effects of protein abundance and turnover on antigen presentation.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(3):658&ndash;73; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25576301 25576301]; doi: [https://dx.doi.org/10.1074/mcp.M114.042812 10.1074/mcp.M114.042812]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25576301 40].
 +
#Hong JH, Kaustov L, Coyaud E, Srikumar T, Wan J, Arrowsmith C, Raught B,  (2015) &quot;KCMF1 (potassium channel modulatory factor 1) Links RAD6 to UBR4 (ubiquitin N-recognin domain-containing E3 ligase 4) and lysosome-mediated degradation.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(3):674&ndash;85; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25582440 25582440]; doi: [https://dx.doi.org/10.1074/mcp.M114.042168 10.1074/mcp.M114.042168]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25582440 58].
 +
#Chiang DY, Lebesgue N, Beavers DL, Alsina KM, Damen JM, Voigt N, Dobrev D, Wehrens XH, Scholten A,  (2015) &quot;Alterations in the interactome of serine/threonine protein phosphatase type-1 in atrial fibrillation patients.&quot; <i>J Am Coll Cardiol</i> <b>65</b>(2):163&ndash;73; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25593058 25593058]; doi: [https://dx.doi.org/10.1016/j.jacc.2014.10.042 10.1016/j.jacc.2014.10.042]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25593058 22].
 +
#Kasvandik S, Sillaste G, Velthut-Meikas A, Mikelsaar AV, Hallap T, Padrik P, Tenson T, Jaakma &Uuml;, K&otilde;ks S, Salumets A,  (2015) &quot;Bovine sperm plasma membrane proteomics through biotinylation and subcellular enrichment.&quot; <i>Proteomics</i> <b>15</b>(11):1906&ndash;20; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25603787 25603787]; doi: [https://dx.doi.org/10.1002/pmic.201400297 10.1002/pmic.201400297]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25603787 16].
 +
#Byron A, Askari JA, Humphries JD, Jacquemet G, Koper EJ, Warwood S, Choi CK, Stroud MJ, Chen CS, Knight D, Humphries MJ,  (2015) &quot;A proteomic approach reveals integrin activation state-dependent control of microtubule cortical targeting.&quot; <i>Nat Commun</i> <b>6</b>:6135; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25609142 25609142]; doi: [https://dx.doi.org/10.1038/ncomms7135 10.1038/ncomms7135]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25609142 237].
 +
#Braakman RB, Bezstarosti K, Sieuwerts AM, de Weerd V, van Galen AM, Stingl C, Luider TM, Timmermans MA, Smid M, Martens JW, Foekens JA, Demmers JA, Umar A,  (2015) &quot;Integrative analysis of genomics and proteomics data on clinical breast cancer tissue specimens extracted with acid guanidinium thiocyanate-phenol-chloroform.&quot; <i>J Proteome Res</i> <b>14</b>(3):1627&ndash;36; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25611981 25611981]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00046 10.1021/acs.jproteome.5b00046]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25611981 3].
 +
#Deshmukh AS, Murgia M, Nagaraj N, Treebak JT, Cox J, Mann M,  (2015) &quot;Deep proteomics of mouse skeletal muscle enables quantitation of protein isoforms, metabolic pathways, and transcription factors.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(4):841&ndash;53; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25616865 25616865]; doi: [https://dx.doi.org/10.1074/mcp.M114.044222 10.1074/mcp.M114.044222]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25616865 6].
 +
#Ramond E, Gesbert G, Guerrera IC, Chhuon C, Dupuis M, Rigard M, Henry T, Barel M, Charbit A,  (2015) &quot;Importance of host cell arginine uptake in Francisella phagosomal escape and ribosomal protein amounts.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(4):870&ndash;81; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25616868 25616868]; doi: [https://dx.doi.org/10.1074/mcp.M114.044552 10.1074/mcp.M114.044552]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25616868 18].
 +
#Loroch S, Schommartz T, Brune W, Zahedi RP, Sickmann A,  (2015) &quot;Multidimensional electrostatic repulsion-hydrophilic interaction chromatography (ERLIC) for quantitative analysis of the proteome and phosphoproteome in clinical and biomedical research.&quot; <i>Biochim Biophys Acta</i> <b>1854</b>(5):460&ndash;8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25619855 25619855]; doi: [https://dx.doi.org/10.1016/j.bbapap.2015.01.006 10.1016/j.bbapap.2015.01.006]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25619855 36].
 +
#Harel M, Oren-Giladi P, Kaidar-Person O, Shaked Y, Geiger T,  (2015) &quot;Proteomics of microparticles with SILAC Quantification (PROMIS-Quan): a novel proteomic method for plasma biomarker quantification.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(4):1127&ndash;36; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25624350 25624350]; doi: [https://dx.doi.org/10.1074/mcp.M114.043364 10.1074/mcp.M114.043364]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25624350 46].
 +
#Zanker D, Otto W, Chen W, von Bergen M, Tomm JM,  (2015) &quot;Compartment resolved reference proteome map from highly purified na&iuml;ve, activated, effector, and memory CD8&#x207A; murine immune cells.&quot; <i>Proteomics</i> <b>15</b>(11):1808&ndash;12; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25643623 25643623]; doi: [https://dx.doi.org/10.1002/pmic.201400405 10.1002/pmic.201400405]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25643623 249].
 +
#Murgia M, Nagaraj N, Deshmukh AS, Zeiler M, Cancellara P, Moretti I, Reggiani C, Schiaffino S, Mann M,  (2015) &quot;Single muscle fiber proteomics reveals unexpected mitochondrial specialization.&quot; <i>EMBO Rep</i> <b>16</b>(3):387&ndash;95; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25643707 25643707]; doi: [https://dx.doi.org/10.15252/embr.201439757 10.15252/embr.201439757]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25643707 89].
 +
#Eagle GL, Zhuang J, Jenkins RE, Till KJ, Jithesh PV, Lin K, Johnson GG, Oates M, Park K, Kitteringham NR, Pettitt AR,  (2015) &quot;Total proteome analysis identifies migration defects as a major pathogenetic factor in immunoglobulin heavy chain variable region (IGHV)-unmutated chronic lymphocytic leukemia.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(4):933&ndash;45; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25645933 25645933]; doi: [https://dx.doi.org/10.1074/mcp.M114.044479 10.1074/mcp.M114.044479]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25645933 3].
 +
#Walker MP, Stopford CM, Cederlund M, Fang F, Jahn C, Rabinowitz AD, Goldfarb D, Graham DM, Yan F, Deal AM, Fedoriw Y, Richards KL, Davis IJ, Weidinger G, Damania B, Major MB,  (2015) &quot;FOXP1 potentiates Wnt/&beta;-catenin signaling in diffuse large B cell lymphoma.&quot; <i>Sci Signal</i> <b>8</b>(362):ra12; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25650440 25650440]; doi: [https://dx.doi.org/10.1126/scisignal.2005654 10.1126/scisignal.2005654]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25650440 8].
 +
#Marza E, Taouji S, Barroso K, Raymond AA, Guignard L, Bonneu M, Pallares-Lupon N, Dupuy JW, Fernandez-Zapico ME, Rosenbaum J, Palladino F, Dupuy D, Chevet E,  (2015) &quot;Genome-wide screen identifies a novel p97/CDC-48-dependent pathway regulating ER-stress-induced gene transcription.&quot; <i>EMBO Rep</i> <b>16</b>(3):332&ndash;40; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25652260 25652260]; doi: [https://dx.doi.org/10.15252/embr.201439123 10.15252/embr.201439123]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25652260 6].
 +
#Corradini E, Burgers PP, Plank M, Heck AJ, Scholten A,  (2015) &quot;Huntingtin-associated protein 1 (HAP1) is a cGMP-dependent kinase anchoring protein (GKAP) specific for the cGMP-dependent protein kinase I&beta; isoform.&quot; <i>J Biol Chem</i> <b>290</b>(12):7887&ndash;96; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25653285 25653285]; doi: [https://dx.doi.org/10.1074/jbc.M114.622613 10.1074/jbc.M114.622613]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25653285 6].
 +
#Sandin M, Chawade A, Levander F,  (2015) &quot;Is label-free LC-MS/MS ready for biomarker discovery?&quot; <i>Proteomics Clin Appl</i> <b>9</b>(3-4):289&ndash;94; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25656266 25656266]; doi: [https://dx.doi.org/10.1002/prca.201400202 10.1002/prca.201400202]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25656266 2].
 +
#Battle A, Khan Z, Wang SH, Mitrano A, Ford MJ, Pritchard JK, Gilad Y,  (2015) &quot;Genomic variation. Impact of regulatory variation from RNA to protein.&quot; <i>Science</i> <b>347</b>(6222):664&ndash;7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25657249 25657249]; doi: [https://dx.doi.org/10.1126/science.1260793 10.1126/science.1260793]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25657249 2622].
 +
#St-Denis N, Gupta GD, Lin ZY, Gonzalez-Badillo B, Pelletier L, Gingras AC,  (2015) &quot;Myotubularin-related proteins 3 and 4 interact with polo-like kinase 1 and centrosomal protein of 55 kDa to ensure proper abscission.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(4):946&ndash;60; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25659891 25659891]; doi: [https://dx.doi.org/10.1074/mcp.M114.046086 10.1074/mcp.M114.046086]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25659891 190].
 +
#Hill RC, Calle EA, Dzieciatkowska M, Niklason LE, Hansen KC,  (2015) &quot;Quantification of extracellular matrix proteins from a rat lung scaffold to provide a molecular readout for tissue engineering.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(4):961&ndash;73; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25660013 25660013]; doi: [https://dx.doi.org/10.1074/mcp.M114.045260 10.1074/mcp.M114.045260]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25660013 60].
 +
#M&eacute;dard G, Pachl F, Ruprecht B, Klaeger S, Heinzlmeir S, Helm D, Qiao H, Ku X, Wilhelm M, Kuehne T, Wu Z, Dittmann A, Hopf C, Kramer K, Kuster B,  (2015) &quot;Optimized chemical proteomics assay for kinase inhibitor profiling.&quot; <i>J Proteome Res</i> <b>14</b>(3):1574&ndash;86; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25660469 25660469]; doi: [https://dx.doi.org/10.1021/pr5012608 10.1021/pr5012608]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25660469 126].
 +
#Krahmer J, Hindle MM, Martin SF, Le Bihan T, Millar AJ,  (2015) &quot;Sample preparation for phosphoproteomic analysis of circadian time series in Arabidopsis thaliana.&quot; <i>Methods Enzymol</i> <b>551</b>:405&ndash;31; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25662467 25662467]; doi: [https://dx.doi.org/10.1016/bs.mie.2014.10.022 10.1016/bs.mie.2014.10.022]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25662467 117].
 +
#Diner BA, Li T, Greco TM, Crow MS, Fuesler JA, Wang J, Cristea IM,  (2015) &quot;The functional interactome of PYHIN immune regulators reveals IFIX is a sensor of viral DNA.&quot; <i>Mol Syst Biol</i> <b>11</b>(1):787; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25665578 25665578]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25665578 21].
 +
#Jacques S, Ghesqui&egrave;re B, De Bock PJ, Demol H, Wahni K, Willems P, Messens J, Van Breusegem F, Gevaert K,  (2015) &quot;Protein Methionine Sulfoxide Dynamics in Arabidopsis thaliana under Oxidative Stress.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(5):1217&ndash;29; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25693801 25693801]; doi: [https://dx.doi.org/10.1074/mcp.M114.043729 10.1074/mcp.M114.043729]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25693801 2].
 +
#Hu J, Huang X, Chen L, Sun X, Lu C, Zhang L, Wang Y, Zuo J,  (2015) &quot;Site-specific nitrosoproteomic identification of endogenously S-nitrosylated proteins in Arabidopsis.&quot; <i>Plant Physiol</i> <b>167</b>(4):1731&ndash;46; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25699590 25699590]; doi: [https://dx.doi.org/10.1104/pp.15.00026 10.1104/pp.15.00026]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25699590 12].
 +
#Peebo K, Valgepea K, Maser A, Nahku R, Adamberg K, Vilu R,  (2015) &quot;Proteome reallocation in Escherichia coli with increasing specific growth rate.&quot; <i>Mol Biosyst</i> <b>11</b>(4):1184&ndash;93; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25712329 25712329]; doi: [https://dx.doi.org/10.1039/c4mb00721b 10.1039/c4mb00721b]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25712329 26].
 +
#Koganti S, Clark C, Zhi J, Li X, Chen EI, Chakrabortty S, Hill ER, Bhaduri-McIntosh S,  (2015) &quot;Cellular STAT3 functions via PCBP2 to restrain Epstein-Barr Virus lytic activation in B lymphocytes.&quot; <i>J Virol</i> <b>89</b>(9):5002&ndash;11; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25717101 25717101]; doi: [https://dx.doi.org/10.1128/JVI.00121-15 10.1128/JVI.00121-15]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25717101 2].
 +
#Kettenbach AN, Deng L, Wu Y, Baldissard S, Adamo ME, Gerber SA, Moseley JB,  (2015) &quot;Quantitative phosphoproteomics reveals pathways for coordination of cell growth and division by the conserved fission yeast kinase pom1.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(5):1275&ndash;87; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25720772 25720772]; doi: [https://dx.doi.org/10.1074/mcp.M114.045245 10.1074/mcp.M114.045245]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25720772 96].
 +
#Gonz&aacute;lez-Prieto R, Cuijpers SA, Luijsterburg MS, van Attikum H, Vertegaal AC,  (2015) &quot;SUMOylation and PARylation cooperate to recruit and stabilize SLX4 at DNA damage sites.&quot; <i>EMBO Rep</i> <b>16</b>(4):512&ndash;9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25722289 25722289]; doi: [https://dx.doi.org/10.15252/embr.201440017 10.15252/embr.201440017]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25722289 27].
 +
#Keshishian H, Burgess MW, Gillette MA, Mertins P, Clauser KR, Mani DR, Kuhn EW, Farrell LA, Gerszten RE, Carr SA,  (2015) &quot;Multiplexed, Quantitative Workflow for Sensitive Biomarker Discovery in Plasma Yields Novel Candidates for Early Myocardial Injury.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(9):2375&ndash;93; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25724909 25724909]; doi: [https://dx.doi.org/10.1074/mcp.M114.046813 10.1074/mcp.M114.046813]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25724909 298].
 +
#Vogel CJ, Smit MA, Maddalo G, Possik PA, Sparidans RW, van der Burg SH, Verdegaal EM, Heck AJ, Samatar AA, Beijnen JH, Altelaar AF, Peeper DS,  (2015) &quot;Cooperative induction of apoptosis in NRAS mutant melanoma by inhibition of MEK and ROCK.&quot; <i>Pigment Cell Melanoma Res</i> <b>28</b>(3):307&ndash;17; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25728708 25728708]; doi: [https://dx.doi.org/10.1111/pcmr.12364 10.1111/pcmr.12364]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25728708 170].
 +
#Zhang H, Deery MJ, Gannon L, Powers SJ, Lilley KS, Theodoulou FL,  (2015) &quot;Quantitative proteomics analysis of the Arg/N-end rule pathway of targeted degradation in Arabidopsis roots.&quot; <i>Proteomics</i> <b>15</b>(14):2447&ndash;57; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25728785 25728785]; doi: [https://dx.doi.org/10.1002/pmic.201400530 10.1002/pmic.201400530]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25728785 14].
 +
#Aller K, Adamberg K, Reile I, Timarova V, Peebo K, Vilu R,  (2015) &quot;Excess of threonine compared with serine promotes threonine aldolase activity in Lactococcus lactis IL1403.&quot; <i>Microbiology</i> <b>161</b>(Pt 5):1073&ndash;80; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25743155 25743155]; doi: [https://dx.doi.org/10.1099/mic.0.000071 10.1099/mic.0.000071]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25743155 6].
 +
#&Scaron;talekar M, Yin X, Rebolj K, Darovic S, Troakes C, Mayr M, Shaw CE, Rogelj B,  (2015) &quot;Proteomic analyses reveal that loss of TDP-43 affects RNA processing and intracellular transport.&quot; <i>Neuroscience</i> <b>293</b>:157&ndash;70; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25743254 25743254]; doi: [https://dx.doi.org/10.1016/j.neuroscience.2015.02.046 10.1016/j.neuroscience.2015.02.046]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25743254 96].
 +
#Jamdhade MD, Pawar H, Chavan S, Sathe G, Umasankar PK, Mahale KN, Dixit T, Madugundu AK, Prasad TS, Gowda H, Pandey A, Patole MS,  (2015) &quot;Comprehensive proteomics analysis of glycosomes from Leishmania donovani.&quot; <i>OMICS</i> <b>19</b>(3):157&ndash;70; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25748437 25748437]; doi: [https://dx.doi.org/10.1089/omi.2014.0163 10.1089/omi.2014.0163]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25748437 2].
 +
#Willger SD, Liu Z, Olarte RA, Adamo ME, Stajich JE, Myers LC, Kettenbach AN, Hogan DA,  (2015) &quot;Analysis of the Candida albicans Phosphoproteome.&quot; <i>Eukaryot Cell</i> <b>14</b>(5):474&ndash;85; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25750214 25750214]; doi: [https://dx.doi.org/10.1128/EC.00011-15 10.1128/EC.00011-15]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25750214 13].
 +
#Sch&ouml;lz C, Weinert BT, Wagner SA, Beli P, Miyake Y, Qi J, Jensen LJ, Streicher W, McCarthy AR, Westwood NJ, Lain S, Cox J, Matthias P, Mann M, Bradner JE, Choudhary C,  (2015) &quot;Acetylation site specificities of lysine deacetylase inhibitors in human cells.&quot; <i>Nat Biotechnol</i> <b>33</b>(4):415&ndash;23; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25751058 25751058]; doi: [https://dx.doi.org/10.1038/nbt.3130 10.1038/nbt.3130]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25751058 292].
 +
#Alvarez Hayes J, Lamberti Y, Surmann K, Schmidt F, V&ouml;lker U, Rodriguez ME,  (2015) &quot;Shotgun proteome analysis of Bordetella pertussis reveals a distinct influence of iron availability on the bacterial metabolism, virulence, and defense response.&quot; <i>Proteomics</i> <b>15</b>(13):2258&ndash;66; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25755163 25755163]; doi: [https://dx.doi.org/10.1002/pmic.201400512 10.1002/pmic.201400512]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25755163 6].
 +
#Xiao Z, Chang JG, Hendriks IA, Sigur&eth;sson JO, Olsen JV, Vertegaal AC,  (2015) &quot;System-wide Analysis of SUMOylation Dynamics in Response to Replication Stress Reveals Novel Small Ubiquitin-like Modified Target Proteins and Acceptor Lysines Relevant for Genome Stability.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(5):1419&ndash;34; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25755297 25755297]; doi: [https://dx.doi.org/10.1074/mcp.O114.044792 10.1074/mcp.O114.044792]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25755297 84].
 +
#Dill BD, Gierlinski M, H&auml;rtlova A, Arandilla AG, Guo M, Clarke RG, Trost M,  (2015) &quot;Quantitative proteome analysis of temporally resolved phagosomes following uptake via key phagocytic receptors.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(5):1334&ndash;49; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25755298 25755298]; doi: [https://dx.doi.org/10.1074/mcp.M114.044594 10.1074/mcp.M114.044594]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25755298 91].
 +
#Mackmull MT, Iskar M, Parca L, Singer S, Bork P, Ori A, Beck M,  (2015) &quot;Histone Deacetylase Inhibitors (HDACi) Cause the Selective Depletion of Bromodomain Containing Proteins (BCPs).&quot; <i>Mol Cell Proteomics</i> <b>14</b>(5):1350&ndash;60; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25755299 25755299]; doi: [https://dx.doi.org/10.1074/mcp.M114.042499 10.1074/mcp.M114.042499]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25755299 96].
 +
#Carter DM, Westdorp K, Noon KR, Terhune SS,  (2015) &quot;Proteomic identification of nuclear processes manipulated by cytomegalovirus early during infection.&quot; <i>Proteomics</i> <b>15</b>(12):1995&ndash;2005; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25758553 25758553]; doi: [https://dx.doi.org/10.1002/pmic.201400599 10.1002/pmic.201400599]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25758553 8].
 +
#Martin-Perez M, Vill&eacute;n J,  (2015) &quot;Feasibility of protein turnover studies in prototroph Saccharomyces cerevisiae strains.&quot; <i>Anal Chem</i> <b>87</b>(7):4008&ndash;14; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25767917 25767917]; doi: [https://dx.doi.org/10.1021/acs.analchem.5b00264 10.1021/acs.analchem.5b00264]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25767917 22].
 +
#Zub KA, Sousa MM, Sarno A, Sharma A, Demirovic A, Rao S, Young C, Aas PA, Ericsson I, Sundan A, Jensen ON, Slupphaug G,  (2015) &quot;Modulation of cell metabolic pathways and oxidative stress signaling contribute to acquired melphalan resistance in multiple myeloma cells.&quot; <i>PLoS One</i> <b>10</b>(3):e0119857; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25769101 25769101]; doi: [https://dx.doi.org/10.1371/journal.pone.0119857 10.1371/journal.pone.0119857]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25769101 12].
 +
#Zigdon H, Savidor A, Levin Y, Meshcheriakova A, Schiffmann R, Futerman AH,  (2015) &quot;Identification of a biomarker in cerebrospinal fluid for neuronopathic forms of Gaucher disease.&quot; <i>PLoS One</i> <b>10</b>(3):e0120194; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25775479 25775479]; doi: [https://dx.doi.org/10.1371/journal.pone.0120194 10.1371/journal.pone.0120194]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25775479 27].
 +
#Shalit T, Elinger D, Savidor A, Gabashvili A, Levin Y,  (2015) &quot;MS1-based label-free proteomics using a quadrupole orbitrap mass spectrometer.&quot; <i>J Proteome Res</i> <b>14</b>(4):1979&ndash;86; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25780947 25780947]; doi: [https://dx.doi.org/10.1021/pr501045t 10.1021/pr501045t]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25780947 12].
 +
#Markmann S, Thelen M, Cornils K, Schweizer M, Brocke-Ahmadinejad N, Willnow T, Heeren J, Gieselmann V, Braulke T, Kollmann K,  (2015) &quot;Lrp1/LDL Receptor Play Critical Roles in Mannose 6-Phosphate-Independent Lysosomal Enzyme Targeting.&quot; <i>Traffic</i> <b>16</b>(7):743&ndash;59; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25786328 25786328]; doi: [https://dx.doi.org/10.1111/tra.12284 10.1111/tra.12284]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25786328 3].
 +
#Manousopoulou A, Woo J, Woelk CH, Johnston HE, Singhania A, Hawkes C, Garbis SD, Carare RO,  (2015) &quot;Are you also what your mother eats? Distinct proteomic portrait as a result of maternal high-fat diet in the cerebral cortex of the adult mouse.&quot; <i>Int J Obes (Lond)</i> <b>39</b>(8):1325&ndash;8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25797609 25797609]; doi: [https://dx.doi.org/10.1038/ijo.2015.35 10.1038/ijo.2015.35]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25797609 61].
 +
#Bracht T, Schweinsberg V, Trippler M, Kohl M, Ahrens M, Padden J, Naboulsi W, Barkovits K, Megger DA, Eisenacher M, Borchers CH, Schlaak JF, Hoffmann AC, Weber F, Baba HA, Meyer HE, Sitek B,  (2015) &quot;Analysis of disease-associated protein expression using quantitative proteomics&mdash;fibulin-5 is expressed in association with hepatic fibrosis.&quot; <i>J Proteome Res</i> <b>14</b>(5):2278&ndash;86; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25807371 25807371]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00053 10.1021/acs.jproteome.5b00053]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25807371 27].
 +
#Broncel M, Serwa RA, Ciepla P, Krause E, Dallman MJ, Magee AI, Tate EW,  (2015) &quot;Multifunctional reagents for quantitative proteome-wide analysis of protein modification in human cells and dynamic profiling of protein lipidation during vertebrate development.&quot; <i>Angew Chem Int Ed Engl</i> <b>54</b>(20):5948&ndash;51; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25807930 25807930]; doi: [https://dx.doi.org/10.1002/anie.201500342 10.1002/anie.201500342]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25807930 1].
 +
#Tsai CF, Wang YT, Yen HY, Tsou CC, Ku WC, Lin PY, Chen HY, Nesvizhskii AI, Ishihama Y, Chen YJ,  (2015) &quot;Large-scale determination of absolute phosphorylation stoichiometries in human cells by motif-targeting quantitative proteomics.&quot; <i>Nat Commun</i> <b>6</b>:6622; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25814448 25814448]; doi: [https://dx.doi.org/10.1038/ncomms7622 10.1038/ncomms7622]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25814448 24].
 +
#Khan MN, Sakata K, Komatsu S,  (2015) &quot;Proteomic analysis of soybean hypocotyl during recovery after flooding stress.&quot; <i>J Proteomics</i> <b>121</b>:15&ndash;27; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25818724 25818724]; doi: [https://dx.doi.org/10.1016/j.jprot.2015.03.020 10.1016/j.jprot.2015.03.020]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25818724 21].
 +
#Moretti F, Rolando C, Winker M, Ivanek R, Rodriguez J, Von Kriegsheim A, Taylor V, Bustin M, Pertz O,  (2015) &quot;Growth Cone Localization of the mRNA Encoding the Chromatin Regulator HMGN5 Modulates Neurite Outgrowth.&quot; <i>Mol Cell Biol</i> <b>35</b>(11):2035&ndash;50; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25825524 25825524]; doi: [https://dx.doi.org/10.1128/MCB.00133-15 10.1128/MCB.00133-15]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25825524 72].
 +
#Alpert AJ, Hudecz O, Mechtler K,  (2015) &quot;Anion-exchange chromatography of phosphopeptides: weak anion exchange versus strong anion exchange and anion-exchange chromatography versus electrostatic repulsion-hydrophilic interaction chromatography.&quot; <i>Anal Chem</i> <b>87</b>(9):4704&ndash;11; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25827581 25827581]; doi: [https://dx.doi.org/10.1021/ac504420c 10.1021/ac504420c]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25827581 42].
 +
#Ao J, Mu Y, Xiang LX, Fan D, Feng M, Zhang S, Shi Q, Zhu LY, Li T, Ding Y, Nie L, Li Q, Dong WR, Jiang L, Sun B, Zhang X, Li M, Zhang HQ, Xie S, Zhu Y, Jiang X, Wang X, Mu P, Chen W, Yue Z, Wang Z, Wang J, Shao JZ, Chen X,  (2015) &quot;Genome sequencing of the perciform fish Larimichthys crocea provides insights into molecular and genetic mechanisms of stress adaptation.&quot; <i>PLoS Genet</i> <b>11</b>(4):e1005118; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25835551 25835551]; doi: [https://dx.doi.org/10.1371/journal.pgen.1005118 10.1371/journal.pgen.1005118]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25835551 20].
 +
#Lardi M, Aguilar C, Pedrioli A, Omasits U, Suppiger A, C&aacute;rcamo-Oyarce G, Schmid N, Ahrens CH, Eberl L, Pessi G,  (2015) &quot;&sigma;54-Dependent Response to Nitrogen Limitation and Virulence in Burkholderia cenocepacia Strain H111.&quot; <i>Appl Environ Microbiol</i> <b>81</b>(12):4077&ndash;89; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25841012 25841012]; doi: [https://dx.doi.org/10.1128/AEM.00694-15 10.1128/AEM.00694-15]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25841012 40].
 +
#Piersma SR, Knol JC, de Reus I, Labots M, Sampadi BK, Pham TV, Ishihama Y, Verheul HM, Jimenez CR,  (2015) &quot;Feasibility of label-free phosphoproteomics and application to base-line signaling of colorectal cancer cell lines.&quot; <i>J Proteomics</i> <b>127</b>(Pt B):247&ndash;58; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25841592 25841592]; doi: [https://dx.doi.org/10.1016/j.jprot.2015.03.019 10.1016/j.jprot.2015.03.019]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25841592 31].
 +
#Krishnan RK, Nolte H, Sun T, Kaur H, Sreenivasan K, Looso M, Offermanns S, Kr&uuml;ger M, Swiercz JM,  (2015) &quot;Quantitative analysis of the TNF-&alpha;-induced phosphoproteome reveals AEG-1/MTDH/LYRIC as an IKK&beta; substrate.&quot; <i>Nat Commun</i> <b>6</b>:6658; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25849741 25849741]; doi: [https://dx.doi.org/10.1038/ncomms7658 10.1038/ncomms7658]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25849741 53].
 +
#Krisp C, Yang H, van Soest R, Molloy MP,  (2015) &quot;Online Peptide fractionation using a multiphasic microfluidic liquid chromatography chip improves reproducibility and detection limits for quantitation in discovery and targeted proteomics.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(6):1708&ndash;19; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25850434 25850434]; doi: [https://dx.doi.org/10.1074/mcp.M114.046425 10.1074/mcp.M114.046425]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25850434 12].
 +
#Stuart SA, Houel S, Lee T, Wang N, Old WM, Ahn NG,  (2015) &quot;A Phosphoproteomic Comparison of B-RAFV600E and MKK1/2 Inhibitors in Melanoma Cells.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(6):1599&ndash;615; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25850435 25850435]; doi: [https://dx.doi.org/10.1074/mcp.M114.047233 10.1074/mcp.M114.047233]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25850435 255].
 +
#Bergner SV, Scholz M, Trompelt K, Barth J, G&auml;belein P, Steinbeck J, Xue H, Clowez S, Fucile G, Goldschmidt-Clermont M, Fufezan C, Hippler M,  (2015) &quot;STATE TRANSITION7-Dependent Phosphorylation Is Modulated by Changing Environmental Conditions, and Its Absence Triggers Remodeling of Photosynthetic Protein Complexes.&quot; <i>Plant Physiol</i> <b>168</b>(2):615&ndash;34; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25858915 25858915]; doi: [https://dx.doi.org/10.1104/pp.15.00072 10.1104/pp.15.00072]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25858915 72].
 +
#Oberstein A, Perlman DH, Shenk T, Terry LJ,  (2015) &quot;Human cytomegalovirus pUL97 kinase induces global changes in the infected cell phosphoproteome.&quot; <i>Proteomics</i> <b>15</b>(12):2006&ndash;22; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25867546 25867546]; doi: [https://dx.doi.org/10.1002/pmic.201400607 10.1002/pmic.201400607]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25867546 8].
 +
#Papadopoulos P, Guti&eacute;rrez L, Demmers J, Scheer E, Pourfarzad F, Papageorgiou DN, Karkoulia E, Strouboulis J, van de Werken HJ, van der Linden R, Vandenberghe P, Dekkers DH, Philipsen S, Grosveld F, Tora L,  (2015) &quot;TAF10 Interacts with the GATA1 Transcription Factor and Controls Mouse Erythropoiesis.&quot; <i>Mol Cell Biol</i> <b>35</b>(12):2103&ndash;18; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25870109 25870109]; doi: [https://dx.doi.org/10.1128/MCB.01370-14 10.1128/MCB.01370-14]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25870109 4].
 +
#Tyagi K, Pedrioli PG,  (2015) &quot;Protein degradation and dynamic tRNA thiolation fine-tune translation at elevated temperatures.&quot; <i>Nucleic Acids Res</i> <b>43</b>(9):4701&ndash;12; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25870413 25870413]; doi: [https://dx.doi.org/10.1093/nar/gkv322 10.1093/nar/gkv322]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25870413 46].
 +
#Rauniyar N, Subramanian K, Lavall&eacute;e-Adam M, Mart&iacute;nez-Bartolom&eacute; S, Balch WE, Yates JR 3rd,  (2015) &quot;Quantitative Proteomics of Human Fibroblasts with I1061T Mutation in Niemann-Pick C1 (NPC1) Protein Provides Insights into the Disease Pathogenesis.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(7):1734&ndash;49; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25873482 25873482]; doi: [https://dx.doi.org/10.1074/mcp.M114.045609 10.1074/mcp.M114.045609]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25873482 2].
 +
#Welinder C, Paw&#x142;owski K, Sugihara Y, Yakovleva M, J&ouml;nsson G, Ingvar C, Lundgren L, Baldetorp B, Olsson H, Rezeli M, Jansson B, Laurell T, Fehniger T, D&ouml;me B, Malm J, Wieslander E, Nishimura T, Marko-Varga G,  (2015) &quot;A protein deep sequencing evaluation of metastatic melanoma tissues.&quot; <i>PLoS One</i> <b>10</b>(4):e0123661; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25874936 25874936]; doi: [https://dx.doi.org/10.1371/journal.pone.0123661 10.1371/journal.pone.0123661]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25874936 11].
 +
#Hosp F, Scheltema RA, Eberl HC, Kulak NA, Keilhauer EC, Mayr K, Mann M,  (2015) &quot;A Double-Barrel Liquid Chromatography-Tandem Mass Spectrometry (LC-MS/MS) System to Quantify 96 Interactomes per Day.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(7):2030&ndash;41; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25887394 25887394]; doi: [https://dx.doi.org/10.1074/mcp.O115.049460 10.1074/mcp.O115.049460]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25887394 234].
 +
#Yu Y, Sikorski P, Bowman-Gholston C, Cacciabeve N, Nelson KE, Pieper R,  (2015) &quot;Diagnosing inflammation and infection in the urinary system via proteomics.&quot; <i>J Transl Med</i> <b>13</b>:111; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25889401 25889401]; doi: [https://dx.doi.org/10.1186/s12967-015-0475-3 10.1186/s12967-015-0475-3]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25889401 260].
 +
#Xu R, Greening DW, Rai A, Ji H, Simpson RJ,  (2015) &quot;Highly-purified exosomes and shed microvesicles isolated from the human colon cancer cell line LIM1863 by sequential centrifugal ultrafiltration are biochemically and functionally distinct.&quot; <i>Methods</i> <b>87</b>:11&ndash;25; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25890246 25890246]; doi: [https://dx.doi.org/10.1016/j.ymeth.2015.04.008 10.1016/j.ymeth.2015.04.008]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25890246 4].
 +
#van der Mijn JC, Labots M, Piersma SR, Pham TV, Knol JC, Broxterman HJ, Verheul HM, Jim&eacute;nez CR,  (2015) &quot;Evaluation of different phospho-tyrosine antibodies for label-free phosphoproteomics.&quot; <i>J Proteomics</i> <b>127</b>(Pt B):259&ndash;63; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25890253 25890253]; doi: [https://dx.doi.org/10.1016/j.jprot.2015.04.006 10.1016/j.jprot.2015.04.006]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25890253 10].
 +
#Lawrence RT, Perez EM, Hern&aacute;ndez D, Miller CP, Haas KM, Irie HY, Lee SI, Blau CA, Vill&eacute;n J,  (2015) &quot;The proteomic landscape of triple-negative breast cancer.&quot; <i>Cell Rep</i> <b>11</b>(4):630&ndash;44; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25892236 25892236]; doi: [https://dx.doi.org/10.1016/j.celrep.2015.03.050 10.1016/j.celrep.2015.03.050]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25892236 91].
 +
#Wang J, Zhang Y, Yu Y,  (2015) &quot;Crescendo: A Protein Sequence Database Search Engine for Tandem Mass Spectra.&quot; <i>J Am Soc Mass Spectrom</i> <b>26</b>(7):1077&ndash;84; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25895889 25895889]; doi: [https://dx.doi.org/10.1007/s13361-015-1120-3 10.1007/s13361-015-1120-3]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25895889 20].
 +
#Wendler S, Otto A, Ortseifen V, Bonn F, Neshat A, Schneiker-Bekel S, Walter F, Wolf T, Zemke T, Wehmeier UF, Hecker M, Kalinowski J, Becher D, P&uuml;hler A,  (2015) &quot;Comprehensive proteome analysis of Actinoplanes sp. SE50/110 highlighting the location of proteins encoded by the acarbose and the pyochelin biosynthesis gene cluster.&quot; <i>J Proteomics</i> <b>125</b>:1&ndash;16; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25896738 25896738]; doi: [https://dx.doi.org/10.1016/j.jprot.2015.04.013 10.1016/j.jprot.2015.04.013]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25896738 198].
 +
#Oettinghaus B, Schulz JM, Restelli LM, Licci M, Savoia C, Schmidt A, Schmitt K, Grimm A, Mor&egrave; L, Hench J, Tolnay M, Eckert A, D&#39;Adamo P, Franken P, Ishihara N, Mihara K, Bischofberger J, Scorrano L, Frank S,  (2016) &quot;Synaptic dysfunction, memory deficits and hippocampal atrophy due to ablation of mitochondrial fission in adult forebrain neurons.&quot; <i>Cell Death Differ</i> <b>23</b>(1):18&ndash;28; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25909888 25909888]; doi: [https://dx.doi.org/10.1038/cdd.2015.39 10.1038/cdd.2015.39]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25909888 12].
 +
#Tan HT, Lim TK, Richards AM, Kofidis T, Teoh KL, Ling LH, Chung MC,  (2015) &quot;Unravelling the proteome of degenerative human mitral valves.&quot; <i>Proteomics</i> <b>15</b>(17):2934&ndash;44; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25914152 25914152]; doi: [https://dx.doi.org/10.1002/pmic.201500040 10.1002/pmic.201500040]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25914152 12].
 +
#Arntzen M&Oslash;, Karlsk&aring;s IL, Skaugen M, Eijsink VG, Mathiesen G,  (2015) &quot;Proteomic Investigation of the Response of Enterococcus faecalis V583 when Cultivated in Urine.&quot; <i>PLoS One</i> <b>10</b>(4):e0126694; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25915650 25915650]; doi: [https://dx.doi.org/10.1371/journal.pone.0126694 10.1371/journal.pone.0126694]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25915650 24].
 +
#Franck WL, Gokce E, Randall SM, Oh Y, Eyre A, Muddiman DC, Dean RA,  (2015) &quot;Phosphoproteome Analysis Links Protein Phosphorylation to Cellular Remodeling and Metabolic Adaptation during Magnaporthe oryzae Appressorium Development.&quot; <i>J Proteome Res</i> <b>14</b>(6):2408&ndash;24; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25926025 25926025]; doi: [https://dx.doi.org/10.1021/pr501064q 10.1021/pr501064q]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25926025 36].
 +
#Le Bihan T, Hindle M, Martin SF, Barrios-Llerena ME, Krahmer J, Kis K, Millar AJ, van Ooijen G,  (2015) &quot;Label-free quantitative analysis of the casein kinase 2-responsive phosphoproteome of the marine minimal model species Ostreococcus tauri.&quot; <i>Proteomics</i> <b>15</b>(23-24):4135&ndash;44; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25930153 25930153]; doi: [https://dx.doi.org/10.1002/pmic.201500086 10.1002/pmic.201500086]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25930153 35].
 +
#Mertz J, Tan H, Pagala V, Bai B, Chen PC, Li Y, Cho JH, Shaw T, Wang X, Peng J,  (2015) &quot;Sequential Elution Interactome Analysis of the Mind Bomb 1 Ubiquitin Ligase Reveals a Novel Role in Dendritic Spine Outgrowth.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(7):1898&ndash;910; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25931508 25931508]; doi: [https://dx.doi.org/10.1074/mcp.M114.045898 10.1074/mcp.M114.045898]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25931508 2].
 +
#Gadelha C, Zhang W, Chamberlain JW, Chait BT, Wickstead B, Field MC,  (2015) &quot;Architecture of a Host-Parasite Interface: Complex Targeting Mechanisms Revealed Through Proteomics.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(7):1911&ndash;26; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25931509 25931509]; doi: [https://dx.doi.org/10.1074/mcp.M114.047647 10.1074/mcp.M114.047647]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25931509 48].
 +
#R&auml;schle M, Smeenk G, Hansen RK, Temu T, Oka Y, Hein MY, Nagaraj N, Long DT, Walter JC, Hofmann K, Storchova Z, Cox J, Bekker-Jensen S, Mailand N, Mann M,  (2015) &quot;DNA repair. Proteomics reveals dynamic assembly of repair complexes during bypass of DNA cross-links.&quot; <i>Science</i> <b>348</b>(6234):1253671; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25931565 25931565]; doi: [https://dx.doi.org/10.1126/science.1253671 10.1126/science.1253671]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25931565 21].
 +
#Penzo M, Rocchi L, Brugiere S, Carnicelli D, Onofrillo C, Cout&eacute; Y, Brigotti M, Montanaro L,  (2015) &quot;Human ribosomes from cells with reduced dyskerin levels are intrinsically altered in translation.&quot; <i>FASEB J</i> <b>29</b>(8):3472&ndash;82; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25934701 25934701]; doi: [https://dx.doi.org/10.1096/fj.15-270991 10.1096/fj.15-270991]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25934701 20].
 +
#B&ouml;hm G, Prefot P, Jung S, Selzer S, Mitra V, Britton D, Kuhn K, Pike I, Thompson AH,  (2015) &quot;Low-pH Solid-Phase Amino Labeling of Complex Peptide Digests with TMTs Improves Peptide Identification Rates for Multiplexed Global Phosphopeptide Analysis.&quot; <i>J Proteome Res</i> <b>14</b>(6):2500&ndash;10; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25939058 25939058]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00072 10.1021/acs.jproteome.5b00072]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25939058 18].
 +
#Sj&ouml;str&ouml;m M, Ossola R, Breslin T, Rinner O, Malmstr&ouml;m L, Schmidt A, Aebersold R, Malmstr&ouml;m J, Nim&eacute;us E,  (2015) &quot;A Combined Shotgun and Targeted Mass Spectrometry Strategy for Breast Cancer Biomarker Discovery.&quot; <i>J Proteome Res</i> <b>14</b>(7):2807&ndash;18; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25944384 25944384]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00315 10.1021/acs.jproteome.5b00315]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25944384 238].
 +
#Svinkina T, Gu H, Silva JC, Mertins P, Qiao J, Fereshetian S, Jaffe JD, Kuhn E, Udeshi ND, Carr SA,  (2015) &quot;Deep, Quantitative Coverage of the Lysine Acetylome Using Novel Anti-acetyl-lysine Antibodies and an Optimized Proteomic Workflow.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(9):2429&ndash;40; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25953088 25953088]; doi: [https://dx.doi.org/10.1074/mcp.O114.047555 10.1074/mcp.O114.047555]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25953088 30].
 +
#Madeira JP, Alpha-Bazin B, Armengaud J, Duport C,  (2015) &quot;Time dynamics of the Bacillus cereus exoproteome are shaped by cellular oxidation.&quot; <i>Front Microbiol</i> <b>6</b>:342; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25954265 25954265]; doi: [https://dx.doi.org/10.3389/fmicb.2015.00342 10.3389/fmicb.2015.00342]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25954265 30].
 +
#Walther DM, Kasturi P, Zheng M, Pinkert S, Vecchi G, Ciryam P, Morimoto RI, Dobson CM, Vendruscolo M, Mann M, Hartl FU,  (2015) &quot;Widespread Proteome Remodeling and Aggregation in Aging C. elegans.&quot; <i>Cell</i> <b>161</b>(4):919&ndash;32; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25957690 25957690]; doi: [https://dx.doi.org/10.1016/j.cell.2015.03.032 10.1016/j.cell.2015.03.032]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25957690 278].
 +
#Hosp F, Vossfeldt H, Heinig M, Vasiljevic D, Arumughan A, Wyler E, Genetic and Environmental Risk for Alzheimer&rsquo;s Disease GERAD1 Consortium., Landthaler M, Hubner N, Wanker EE, Lannfelt L, Ingelsson M, Lalowski M, Voigt A, Selbach M,  (2015) &quot;Quantitative interaction proteomics of neurodegenerative disease proteins.&quot; <i>Cell Rep</i> <b>11</b>(7):1134&ndash;46; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25959826 25959826]; doi: [https://dx.doi.org/10.1016/j.celrep.2015.04.030 10.1016/j.celrep.2015.04.030]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25959826 122].
 +
#Tay AP, Pang CN, Twine NA, Hart-Smith G, Harkness L, Kassem M, Wilkins MR,  (2015) &quot;Proteomic Validation of Transcript Isoforms, Including Those Assembled from RNA-Seq Data.&quot; <i>J Proteome Res</i> <b>14</b>(9):3541&ndash;54; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25961807 25961807]; doi: [https://dx.doi.org/10.1021/pr5011394 10.1021/pr5011394]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25961807 77].
 +
#Drissi R, Dubois ML, Douziech M, Boisvert FM,  (2015) &quot;Quantitative Proteomics Reveals Dynamic Interactions of the Minichromosome Maintenance Complex (MCM) in the Cellular Response to Etoposide Induced DNA Damage.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(7):2002&ndash;13; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25963833 25963833]; doi: [https://dx.doi.org/10.1074/mcp.M115.048991 10.1074/mcp.M115.048991]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25963833 48].
 +
#Koch H, Busto ME, Kramer K, M&eacute;dard G, Kuster B,  (2015) &quot;Chemical Proteomics Uncovers EPHA2 as a Mechanism of Acquired Resistance to Small Molecule EGFR Kinase Inhibition.&quot; <i>J Proteome Res</i> <b>14</b>(6):2617&ndash;25; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25963923 25963923]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00161 10.1021/acs.jproteome.5b00161]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25963923 18].
 +
#Watanabe S, Tan D, Lakshminarasimhan M, Washburn MP, Hong EJ, Walz T, Peterson CL,  (2015) &quot;Structural analyses of the chromatin remodelling enzymes INO80-C and SWR-C.&quot; <i>Nat Commun</i> <b>6</b>:7108; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25964121 25964121]; doi: [https://dx.doi.org/10.1038/ncomms8108 10.1038/ncomms8108]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25964121 2].
 +
#Hesketh A, Deery MJ, Hong HJ,  (2015) &quot;High-Resolution Mass Spectrometry Based Proteomic Analysis of the Response to Vancomycin-Induced Cell Wall Stress in Streptomyces coelicolor A3(2).&quot; <i>J Proteome Res</i> <b>14</b>(7):2915&ndash;28; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25965010 25965010]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00242 10.1021/acs.jproteome.5b00242]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25965010 3].
 +
#Xiong Q, Zhang L, Xin L, Gao Y, Peng Y, Tang P, Ge W,  (2015) &quot;Proteomic study of different culture medium serum volume fractions on RANKL-dependent RAW264.7 cells differentiating into osteoclasts.&quot; <i>Proteome Sci</i> <b>13</b>:16; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25969670 25969670]; doi: [https://dx.doi.org/10.1186/s12953-015-0073-6 10.1186/s12953-015-0073-6]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25969670 1].
 +
#Oishi N, Duscha S, Boukari H, Meyer M, Xie J, Wei G, Schrepfer T, Roschitzki B, Boettger EC, Schacht J,  (2015) &quot;XBP1 mitigates aminoglycoside-induced endoplasmic reticulum stress and neuronal cell death.&quot; <i>Cell Death Dis</i> <b>6</b>:e1763; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25973683 25973683]; doi: [https://dx.doi.org/10.1038/cddis.2015.108 10.1038/cddis.2015.108]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25973683 1].
 +
#Lee JG, McKinney KQ, Lee YY, Chung HN, Pavlopoulos AJ, Jung KY, Kim WK, Kuroda MJ, Han DK, Hwang S,  (2015) &quot;A draft map of rhesus monkey tissue proteome for biomedical research.&quot; <i>PLoS One</i> <b>10</b>(5):e0126243; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25974132 25974132]; doi: [https://dx.doi.org/10.1371/journal.pone.0126243 10.1371/journal.pone.0126243]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25974132 19].
 +
#Gorshkov V, Verano-Braga T, Kjeldsen F,  (2015) &quot;SuperQuant: A Data Processing Approach to Increase Quantitative Proteome Coverage.&quot; <i>Anal Chem</i> <b>87</b>(12):6319&ndash;27; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25978296 25978296]; doi: [https://dx.doi.org/10.1021/acs.analchem.5b01166 10.1021/acs.analchem.5b01166]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25978296 12].
 +
#Dinets A, Pernemalm M, Kjellin H, Sviatoha V, Sofiadis A, Juhlin CC, Zedenius J, Larsson C, Lehti&ouml; J, H&ouml;&ouml;g A,  (2015) &quot;Differential protein expression profiles of cyst fluid from papillary thyroid carcinoma and benign thyroid lesions.&quot; <i>PLoS One</i> <b>10</b>(5):e0126472; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25978681 25978681]; doi: [https://dx.doi.org/10.1371/journal.pone.0126472 10.1371/journal.pone.0126472]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25978681 2].
 +
#Campos A, D&iacute;az R, Mart&iacute;nez-Bartolom&eacute; S, Sierra J, Gallardo O, Sabid&oacute; E, L&oacute;pez-Lucendo M, Ignacio Casal J, Pasquarello C, Scherl A, Chiva C, Borras E, Odena A, Elortza F, Azkargorta M, Ibarrola N, Canals F, Albar JP, Oliveira E,  (2015) &quot;Multicenter experiment for quality control of peptide-centric LC-MS/MS analysis - A longitudinal performance assessment with nLC coupled to orbitrap MS analyzers.&quot; <i>J Proteomics</i> <b>127</b>(Pt B):264&ndash;74; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25982386 25982386]; doi: [https://dx.doi.org/10.1016/j.jprot.2015.05.012 10.1016/j.jprot.2015.05.012]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25982386 112].
 +
#Sj&ouml;lin-Goodfellow H, Frushicheva MP, Ji Q, Cheng DA, Kadlecek TA, Cantor AJ, Kuriyan J, Chakraborty AK, Salomon AR, Weiss A,  (2015) &quot;The catalytic activity of the kinase ZAP-70 mediates basal signaling and negative feedback of the T cell receptor pathway.&quot; <i>Sci Signal</i> <b>8</b>(377):ra49; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25990959 25990959]; doi: [https://dx.doi.org/10.1126/scisignal.2005596 10.1126/scisignal.2005596]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25990959 20].
 +
#Graessel A, Hauck SM, von Toerne C, Kloppmann E, Goldberg T, Koppensteiner H, Schindler M, Knapp B, Krause L, Dietz K, Schmidt-Weber CB, Suttner K,  (2015) &quot;A Combined Omics Approach to Generate the Surface Atlas of Human Naive CD4+ T Cells during Early T-Cell Receptor Activation.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(8):2085&ndash;102; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25991687 25991687]; doi: [https://dx.doi.org/10.1074/mcp.M114.045690 10.1074/mcp.M114.045690]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25991687 48].
 +
#Bennike TB, Carlsen TG, Ellingsen T, Bonderup OK, Glerup H, B&oslash;gsted M, Christiansen G, Birkelund S, Stensballe A, Andersen V,  (2015) &quot;Neutrophil Extracellular Traps in Ulcerative Colitis: A Proteome Analysis of Intestinal Biopsies.&quot; <i>Inflamm Bowel Dis</i> <b>21</b>(9):2052&ndash;67; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25993694 25993694]; doi: [https://dx.doi.org/10.1097/MIB.0000000000000460 10.1097/MIB.0000000000000460]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25993694 60].
 +
#Jehmlich N, Stegmaier P, Golatowski C, Salazar MG, Rischke C, Henke M, V&ouml;lker U,  (2015) &quot;Differences in the whole saliva baseline proteome profile associated with development of oral mucositis in head and neck cancer patients undergoing radiotherapy.&quot; <i>J Proteomics</i> <b>125</b>:98&ndash;103; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25997676 25997676]; doi: [https://dx.doi.org/10.1016/j.jprot.2015.04.030 10.1016/j.jprot.2015.04.030]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25997676 56].
 +
#Kharlampieva D, Manuvera V, Podgorny O, Grafskaia E, Kovalchuk S, Pobeguts O, Altukhov I, Govorun V, Lazarev V,  (2015) &quot;Recombinant fragilysin isoforms cause E-cadherin cleavage of intact cells and do not cleave isolated E-cadherin.&quot; <i>Microb Pathog</i> <b>83-84</b>:47&ndash;56; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25998017 25998017]; doi: [https://dx.doi.org/10.1016/j.micpath.2015.05.003 10.1016/j.micpath.2015.05.003]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25998017 23].
 +
#Chen Y, Yang F, Sun Z, Wang Q, Mi K, Deng H,  (2015) &quot;Proteomic Analysis of Drug-Resistant Mycobacteria: Co-Evolution of Copper and INH Resistance.&quot; <i>PLoS One</i> <b>10</b>(6):e0127788; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26035302 26035302]; doi: [https://dx.doi.org/10.1371/journal.pone.0127788 10.1371/journal.pone.0127788]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26035302 1].
 +
#Aeberhard L, Banhart S, Fischer M, Jehmlich N, Rose L, Koch S, Laue M, Renard BY, Schmidt F, Heuer D,  (2015) &quot;The Proteome of the Isolated Chlamydia trachomatis Containing Vacuole Reveals a Complex Trafficking Platform Enriched for Retromer Components.&quot; <i>PLoS Pathog</i> <b>11</b>(6):e1004883; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26042774 26042774]; doi: [https://dx.doi.org/10.1371/journal.ppat.1004883 10.1371/journal.ppat.1004883]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26042774 24].
 +
#Helou YA, Petrashen AP, Salomon AR,  (2015) &quot;Vav1 Regulates T-Cell Activation through a Feedback Mechanism and Crosstalk between the T-Cell Receptor and CD28.&quot; <i>J Proteome Res</i> <b>14</b>(7):2963&ndash;75; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26043137 26043137]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00340 10.1021/acs.jproteome.5b00340]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26043137 40].
 +
#Marie P, Labas V, Brionne A, Harichaux G, Hennequet-Antier C, Rodriguez-Navarro AB, Nys Y, Gautron J,  (2015) &quot;Quantitative proteomics provides new insights into chicken eggshell matrix protein functions during the primary events of mineralisation and the active calcification phase.&quot; <i>J Proteomics</i> <b>126</b>:140&ndash;54; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26049031 26049031]; doi: [https://dx.doi.org/10.1016/j.jprot.2015.05.034 10.1016/j.jprot.2015.05.034]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26049031 180].
 +
#Higgins R, Gendron JM, Rising L, Mak R, Webb K, Kaiser SE, Zuzow N, Riviere P, Yang B, Fenech E, Tang X, Lindsay SA, Christianson JC, Hampton RY, Wasserman SA, Bennett EJ,  (2015) &quot;The Unfolded Protein Response Triggers Site-Specific Regulatory Ubiquitylation of 40S Ribosomal Proteins.&quot; <i>Mol Cell</i> <b>59</b>(1):35&ndash;49; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26051182 26051182]; doi: [https://dx.doi.org/10.1016/j.molcel.2015.04.026 10.1016/j.molcel.2015.04.026]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26051182 54].
 +
#Sethi MK, Thaysen-Andersen M, Kim H, Park CK, Baker MS, Packer NH, Paik YK, Hancock WS, Fanayan S,  (2015) &quot;Quantitative proteomic analysis of paired colorectal cancer and non-tumorigenic tissues reveals signature proteins and perturbed pathways involved in CRC progression and metastasis.&quot; <i>J Proteomics</i> <b>126</b>:54&ndash;67; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26054784 26054784]; doi: [https://dx.doi.org/10.1016/j.jprot.2015.05.037 10.1016/j.jprot.2015.05.037]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26054784 15].
 +
#Cifani P, Kirik U, Waldemarson S, James P,  (2015) &quot;Molecular Portrait of Breast-Cancer-Derived Cell Lines Reveals Poor Similarity with Tumors.&quot; <i>J Proteome Res</i> <b>14</b>(7):2819&ndash;27; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26055192 26055192]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00375 10.1021/acs.jproteome.5b00375]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26055192 439].
 +
#McCloy RA, Parker BL, Rogers S, Chaudhuri R, Gayevskiy V, Hoffman NJ, Ali N, Watkins DN, Daly RJ, James DE, Lorca T, Castro A, Burgess A,  (2015) &quot;Global Phosphoproteomic Mapping of Early Mitotic Exit in Human Cells Identifies Novel Substrate Dephosphorylation Motifs.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(8):2194&ndash;212; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26055452 26055452]; doi: [https://dx.doi.org/10.1074/mcp.M114.046938 10.1074/mcp.M114.046938]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26055452 29].
 +
#Mulvey CM, Schr&ouml;ter C, Gatto L, Dikicioglu D, Fidaner IB, Christoforou A, Deery MJ, Cho LT, Niakan KK, Martinez-Arias A, Lilley KS,  (2015) &quot;Dynamic Proteomic Profiling of Extra-Embryonic Endoderm Differentiation in Mouse Embryonic Stem Cells.&quot; <i>Stem Cells</i> <b>33</b>(9):2712&ndash;25; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26059426 26059426]; doi: [https://dx.doi.org/10.1002/stem.2067 10.1002/stem.2067]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26059426 7].
 +
#Chang JW, Zhang W, Yeh HS, de Jong EP, Jun S, Kim KH, Bae SS, Beckman K, Hwang TH, Kim KS, Kim DH, Griffin TJ, Kuang R, Yong J,  (2015) &quot;mRNA 3&#39;-UTR shortening is a molecular signature of mTORC1 activation.&quot; <i>Nat Commun</i> <b>6</b>:7218; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26074333 26074333]; doi: [https://dx.doi.org/10.1038/ncomms8218 10.1038/ncomms8218]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26074333 1].
 +
#Murphy JP, Stepanova E, Everley RA, Paulo JA, Gygi SP,  (2015) &quot;Comprehensive Temporal Protein Dynamics during the Diauxic Shift in Saccharomyces cerevisiae.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(9):2454&ndash;65; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26077900 26077900]; doi: [https://dx.doi.org/10.1074/mcp.M114.045849 10.1074/mcp.M114.045849]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26077900 66].
 +
#Wi&#x15B;niewski JR, Gizak A, Rakus D,  (2015) &quot;Integrating Proteomics and Enzyme Kinetics Reveals Tissue-Specific Types of the Glycolytic and Gluconeogenic Pathways.&quot; <i>J Proteome Res</i> <b>14</b>(8):3263&ndash;73; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26080680 26080680]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00276 10.1021/acs.jproteome.5b00276]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26080680 18].
 +
#Yagoub D, Hart-Smith G, Moecking J, Erce MA, Wilkins MR,  (2015) &quot;Yeast proteins Gar1p, Nop1p, Npl3p, Nsr1p, and Rps2p are natively methylated and are substrates of the arginine methyltransferase Hmt1p.&quot; <i>Proteomics</i> <b>15</b>(18):3209&ndash;18; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26081071 26081071]; doi: [https://dx.doi.org/10.1002/pmic.201500075 10.1002/pmic.201500075]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26081071 7].
 +
#Mui MZ, Zhou Y, Blanchette P, Chughtai N, Knight JF, Gruosso T, Papadakis AI, Huang S, Park M, Gingras AC, Branton PE,  (2015) &quot;The Human Adenovirus Type 5 E4orf4 Protein Targets Two Phosphatase Regulators of the Hippo Signaling Pathway.&quot; <i>J Virol</i> <b>89</b>(17):8855&ndash;70; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26085163 26085163]; doi: [https://dx.doi.org/10.1128/JVI.03710-14 10.1128/JVI.03710-14]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26085163 16].
 +
#Cehofski LJ, Kruse A, Kj&aelig;rgaard B, Stensballe A, Honor&eacute; B, Vorum H,  (2015) &quot;Proteins involved in focal adhesion signaling pathways are differentially regulated in experimental branch retinal vein occlusion.&quot; <i>Exp Eye Res</i> <b>138</b>:87&ndash;95; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26086079 26086079]; doi: [https://dx.doi.org/10.1016/j.exer.2015.06.011 10.1016/j.exer.2015.06.011]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26086079 48].
 +
#Stebbing J, Zhang H, Xu Y, Grothey A, Ajuh P, Angelopoulos N, Giamas G,  (2015) &quot;Characterization of the Tyrosine Kinase-Regulated Proteome in Breast Cancer by Combined use of RNA interference (RNAi) and Stable Isotope Labeling with Amino Acids in Cell Culture (SILAC) Quantitative Proteomics.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(9):2479&ndash;92; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26089344 26089344]; doi: [https://dx.doi.org/10.1074/mcp.M115.048090 10.1074/mcp.M115.048090]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26089344 370].
 +
#Muqaku B, Slany A, Bileck A, Kreutz D, Gerner C,  (2015) &quot;Quantification of cytokines secreted by primary human cells using multiple reaction monitoring: evaluation of analytical parameters.&quot; <i>Anal Bioanal Chem</i> <b>407</b>(21):6525&ndash;36; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26092402 26092402]; doi: [https://dx.doi.org/10.1007/s00216-015-8817-9 10.1007/s00216-015-8817-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26092402 19].
 +
#Barco RA, Emerson D, Sylvan JB, Orcutt BN, Jacobson Meyers ME, Ram&iacute;rez GA, Zhong JD, Edwards KJ,  (2015) &quot;New Insight into Microbial Iron Oxidation as Revealed by the Proteomic Profile of an Obligate Iron-Oxidizing Chemolithoautotroph.&quot; <i>Appl Environ Microbiol</i> <b>81</b>(17):5927&ndash;37; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26092463 26092463]; doi: [https://dx.doi.org/10.1128/AEM.01374-15 10.1128/AEM.01374-15]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26092463 28].
 +
#Mei Y, Wang Y, Kumari P, Shetty AC, Clark D, Gable T, MacKerell AD, Ma MZ, Weber DJ, Yang AJ, Edelman MJ, Mao L,  (2015) &quot;A piRNA-like small RNA interacts with and modulates p-ERM proteins in human somatic cells.&quot; <i>Nat Commun</i> <b>6</b>:7316; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26095918 26095918]; doi: [https://dx.doi.org/10.1038/ncomms8316 10.1038/ncomms8316]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26095918 2].
 +
#Ducret A, Kux van Geijtenbeek S, R&ouml;der D, Simon S, Chin D, Berrera M, Gruenbaum L, Ji C, Cutler P,  (2015) &quot;Identification of six cell surface proteins for specific liver targeting.&quot; <i>Proteomics Clin Appl</i> <b>9</b>(7-8):651&ndash;61; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26097162 26097162]; doi: [https://dx.doi.org/10.1002/prca.201400194 10.1002/prca.201400194]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26097162 68].
 +
#Kosono S, Tamura M, Suzuki S, Kawamura Y, Yoshida A, Nishiyama M, Yoshida M,  (2015) &quot;Changes in the Acetylome and Succinylome of Bacillus subtilis in Response to Carbon Source.&quot; <i>PLoS One</i> <b>10</b>(6):e0131169; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26098117 26098117]; doi: [https://dx.doi.org/10.1371/journal.pone.0131169 10.1371/journal.pone.0131169]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26098117 6].
 +
#Clabaut A, Grare C, L&eacute;ger T, Hardouin P, Broux O,  (2015) &quot;Variations of secretome profiles according to conditioned medium preparation: The example of human mesenchymal stem cell-derived adipocytes.&quot; <i>Electrophoresis</i> <b>36</b>(20):2587&ndash;93; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26105977 26105977]; doi: [https://dx.doi.org/10.1002/elps.201500086 10.1002/elps.201500086]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26105977 6].
 +
#Chen Y, Li Y, Zhong J, Zhang J, Chen Z, Yang L, Cao X, He QY, Zhang G, Wang T,  (2015) &quot;Identification of Missing Proteins Defined by Chromosome-Centric Proteome Project in the Cytoplasmic Detergent-Insoluble Proteins.&quot; <i>J Proteome Res</i> <b>14</b>(9):3693&ndash;709; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26108252 26108252]; doi: [https://dx.doi.org/10.1021/pr501103r 10.1021/pr501103r]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26108252 46].
 +
#Uebbing S, Konzer A, Xu L, Backstr&ouml;m N, Brunstr&ouml;m B, Bergquist J, Ellegren H,  (2015) &quot;Quantitative Mass Spectrometry Reveals Partial Translational Regulation for Dosage Compensation in Chicken.&quot; <i>Mol Biol Evol</i> <b>32</b>(10):2716&ndash;25; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26108680 26108680]; doi: [https://dx.doi.org/10.1093/molbev/msv147 10.1093/molbev/msv147]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26108680 30].
 +
#In&aacute;cio P, Zuzarte-Lu&iacute;s V, Ruivo MT, Falkard B, Nagaraj N, Rooijers K, Mann M, Mair G, Fidock DA, Mota MM,  (2015) &quot;Parasite-induced ER stress response in hepatocytes facilitates Plasmodium liver stage infection.&quot; <i>EMBO Rep</i> <b>16</b>(8):955&ndash;64; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26113366 26113366]; doi: [https://dx.doi.org/10.15252/embr.201439979 10.15252/embr.201439979]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26113366 16].
 +
#Zhu M, Wu G, Li YX, Stevens JK, Fan CX, Spang A, Dong MQ,  (2015) &quot;Serum- and Glucocorticoid-Inducible Kinase-1 (SGK-1) Plays a Role in Membrane Trafficking in Caenorhabditis elegans.&quot; <i>PLoS One</i> <b>10</b>(6):e0130778; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26115433 26115433]; doi: [https://dx.doi.org/10.1371/journal.pone.0130778 10.1371/journal.pone.0130778]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26115433 2].
 +
#Marcon E, Jain H, Bhattacharya A, Guo H, Phanse S, Pu S, Byram G, Collins BC, Dowdell E, Fenner M, Guo X, Hutchinson A, Kennedy JJ, Krastins B, Larsen B, Lin ZY, Lopez MF, Loppnau P, Miersch S, Nguyen T, Olsen JB, Paduch M, Ravichandran M, Seitova A, Vadali G, Vogelsang MS, Whiteaker JR, Zhong G, Zhong N, Zhao L, Aebersold R, Arrowsmith CH, Emili A, Frappier L, Gingras AC, Gstaiger M, Paulovich AG, Koide S, Kossiakoff AA, Sidhu SS, Wodak SJ, Gr&auml;slund S, Greenblatt JF, Edwards AM,  (2015) &quot;Assessment of a method to characterize antibody selectivity and specificity for use in immunoprecipitation.&quot; <i>Nat Methods</i> <b>12</b>(8):725&ndash;31; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26121405 26121405]; doi: [https://dx.doi.org/10.1038/nmeth.3472 10.1038/nmeth.3472]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26121405 1220].
 +
#Cardona M, L&oacute;pez JA, Seraf&iacute;n A, Rongvaux A, Inserte J, Garc&iacute;a-Dorado D, Flavell R, Llovera M, Ca&ntilde;as X, V&aacute;zquez J, Sanchis D,  (2015) &quot;Executioner Caspase-3 and 7 Deficiency Reduces Myocyte Number in the Developing Mouse Heart.&quot; <i>PLoS One</i> <b>10</b>(6):e0131411; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26121671 26121671]; doi: [https://dx.doi.org/10.1371/journal.pone.0131411 10.1371/journal.pone.0131411]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26121671 8].
 +
#Herbst FA, Danielsen HN, Wimmer R, Nielsen PH, Dueholm MS,  (2015) &quot;Label-free quantification reveals major proteomic changes in Pseudomonas putida F1 during the exponential growth phase.&quot; <i>Proteomics</i> <b>15</b>(18):3244&ndash;52; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26122999 26122999]; doi: [https://dx.doi.org/10.1002/pmic.201400482 10.1002/pmic.201400482]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26122999 16].
 +
#Sghaier H, Hezbri K, Ghodhbane-Gtari F, Pujic P, Sen A, Daffonchio D, Boudabous A, Tisa LS, Klenk HP, Armengaud J, Normand P, Gtari M,  (2016) &quot;Stone-dwelling actinobacteria Blastococcus saxobsidens, Modestobacter marinus and Geodermatophilus obscurus proteogenomes.&quot; <i>ISME J</i> <b>10</b>(1):21&ndash;9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26125681 26125681]; doi: [https://dx.doi.org/10.1038/ismej.2015.108 10.1038/ismej.2015.108]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26125681 9].
 +
#Carapito C, Lane L, Benama M, Opsomer A, Mouton-Barbosa E, Garrigues L, Gonzalez de Peredo A, Burel A, Bruley C, Gateau A, Bouyssi&eacute; D, Jaquinod M, Cianferani S, Burlet-Schiltz O, Van Dorsselaer A, Garin J, Vandenbrouck Y,  (2015) &quot;Computational and Mass-Spectrometry-Based Workflow for the Discovery and Validation of Missing Human Proteins: Application to Chromosomes 2 and 14.&quot; <i>J Proteome Res</i> <b>14</b>(9):3621&ndash;34; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26132440 26132440]; doi: [https://dx.doi.org/10.1021/pr5010345 10.1021/pr5010345]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26132440 58].
 +
#Dislich B, Wohlrab F, Bachhuber T, M&uuml;ller SA, Kuhn PH, Hogl S, Meyer-Luehmann M, Lichtenthaler SF,  (2015) &quot;Label-free Quantitative Proteomics of Mouse Cerebrospinal Fluid Detects &beta;-Site APP Cleaving Enzyme (BACE1) Protease Substrates In Vivo.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(10):2550&ndash;63; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26139848 26139848]; doi: [https://dx.doi.org/10.1074/mcp.M114.041533 10.1074/mcp.M114.041533]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26139848 26].
 +
#Swaney DL, Rodr&iacute;guez-Mias RA, Vill&eacute;n J,  (2015) &quot;Phosphorylation of ubiquitin at Ser65 affects its polymerization, targets, and proteome-wide turnover.&quot; <i>EMBO Rep</i> <b>16</b>(9):1131&ndash;44; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26142280 26142280]; doi: [https://dx.doi.org/10.15252/embr.201540298 10.15252/embr.201540298]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26142280 56].
 +
#Su N, Zhang C, Zhang Y, Wang Z, Fan F, Zhao M, Wu F, Gao Y, Li Y, Chen L, Tian M, Zhang T, Wen B, Sensang N, Xiong Z, Wu S, Liu S, Yang P, Zhen B, Zhu Y, He F, Xu P,  (2015) &quot;Special Enrichment Strategies Greatly Increase the Efficiency of Missing Proteins Identification from Regular Proteome Samples.&quot; <i>J Proteome Res</i> <b>14</b>(9):3680&ndash;92; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26144840 26144840]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00481 10.1021/acs.jproteome.5b00481]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26144840 428].
 +
#Ajeian JN, Horton ER, Astudillo P, Byron A, Askari JA, Millon-Fr&eacute;millon A, Knight D, Kimber SJ, Humphries MJ, Humphries JD,  (2016) &quot;Proteomic analysis of integrin-associated complexes from mesenchymal stem cells.&quot; <i>Proteomics Clin Appl</i> <b>10</b>(1):51&ndash;7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26147903 26147903]; doi: [https://dx.doi.org/10.1002/prca.201500033 10.1002/prca.201500033]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26147903 177].
 +
#Hoover H, Li J, Marchese J, Rothwell C, Borawoski J, Jeffery DA, Gaither LA, Finkel N,  (2015) &quot;Quantitative Proteomic Verification of Membrane Proteins as Potential Therapeutic Targets Located in the 11q13 Amplicon in Cancers.&quot; <i>J Proteome Res</i> <b>14</b>(9):3670&ndash;9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26151158 26151158]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00508 10.1021/acs.jproteome.5b00508]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26151158 27].
 +
#Huber RJ, O&#39;Day DH,  (2015) &quot;Proteomic profiling of the extracellular matrix (slime sheath) of Dictyostelium discoideum.&quot; <i>Proteomics</i> <b>15</b>(19):3315&ndash;9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26152465 26152465]; doi: [https://dx.doi.org/10.1002/pmic.201500143 10.1002/pmic.201500143]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26152465 23].
 +
#Moche M, Schl&uuml;ter R, Bernhardt J, Plate K, Riedel K, Hecker M, Becher D,  (2015) &quot;Time-Resolved Analysis of Cytosolic and Surface-Associated Proteins of Staphylococcus aureus HG001 under Planktonic and Biofilm Conditions.&quot; <i>J Proteome Res</i> <b>14</b>(9):3804&ndash;22; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26152824 26152824]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00148 10.1021/acs.jproteome.5b00148]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26152824 924].
 +
#Caron E, Espona L, Kowalewski DJ, Schuster H, Ternette N, Alp&iacute;zar A, Schittenhelm RB, Ramarathinam SH, Lindestam Arlehamn CS, Chiek Koh C, Gillet LC, Rabsteyn A, Navarro P, Kim S, Lam H, Sturm T, Marcilla M, Sette A, Campbell DS, Deutsch EW, Moritz RL, Purcell AW, Rammensee HG, Stevanovic S, Aebersold R,  (2015) &quot;An open-source computational and data resource to analyze digital maps of immunopeptidomes.&quot; <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26154972 26154972]; doi: [https://dx.doi.org/10.7554/eLife.07661 10.7554/eLife.07661]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26154972 70].
 +
#Madsen CT, Sylvestersen KB, Young C, Larsen SC, Poulsen JW, Andersen MA, Palmqvist EA, Hey-Mogensen M, Jensen PB, Treebak JT, Lisby M, Nielsen ML,  (2015) &quot;Biotin starvation causes mitochondrial protein hyperacetylation and partial rescue by the SIRT3-like deacetylase Hst4p.&quot; <i>Nat Commun</i> <b>6</b>:7726; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26158509 26158509]; doi: [https://dx.doi.org/10.1038/ncomms8726 10.1038/ncomms8726]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26158509 47].
 +
#Stroud DA, Maher MJ, Lindau C, V&ouml;gtle FN, Frazier AE, Surgenor E, Mountford H, Singh AP, Bonas M, Oeljeklaus S, Warscheid B, Meisinger C, Thorburn DR, Ryan MT,  (2015) &quot;COA6 is a mitochondrial complex IV assembly factor critical for biogenesis of mtDNA-encoded COX2.&quot; <i>Hum Mol Genet</i> <b>24</b>(19):5404&ndash;15; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26160915 26160915]; doi: [https://dx.doi.org/10.1093/hmg/ddv265 10.1093/hmg/ddv265]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26160915 14].
 +
#Jumeau F, Com E, Lane L, Duek P, Lagarrigue M, Lavigne R, Guillot L, Rondel K, Gateau A, Melaine N, Gu&eacute;vel B, Sergeant N, Mitchell V, Pineau C,  (2015) &quot;Human Spermatozoa as a Model for Detecting Missing Proteins in the Context of the Chromosome-Centric Human Proteome Project.&quot; <i>J Proteome Res</i> <b>14</b>(9):3606&ndash;20; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26168773 26168773]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00170 10.1021/acs.jproteome.5b00170]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26168773 63].
 +
#Schiller HB, Fernandez IE, Burgstaller G, Schaab C, Scheltema RA, Schwarzmayr T, Strom TM, Eickelberg O, Mann M,  (2015) &quot;Time- and compartment-resolved proteome profiling of the extracellular niche in lung injury and repair.&quot; <i>Mol Syst Biol</i> <b>11</b>(7):819; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26174933 26174933]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26174933 228].
 +
#Morley S, You S, Pollan S, Choi J, Zhou B, Hager MH, Steadman K, Spinelli C, Rajendran K, Gertych A, Kim J, Adam RM, Yang W, Krishnan R, Knudsen BS, Di Vizio D, Freeman MR,  (2015) &quot;Regulation of microtubule dynamics by DIAPH3 influences amoeboid tumor cell mechanics and sensitivity to taxanes.&quot; <i>Sci Rep</i> <b>5</b>:12136; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26179371 26179371]; doi: [https://dx.doi.org/10.1038/srep12136 10.1038/srep12136]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26179371 16].
 +
#Feng S, Powell SM, Wilson R, Bowman JP,  (2015) &quot;Proteomic Insight into Functional Changes of Proteorhodopsin-Containing Bacterial Species Psychroflexus torquis under Different Illumination and Salinity Levels.&quot; <i>J Proteome Res</i> <b>14</b>(9):3848&ndash;58; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26179671 26179671]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00241 10.1021/acs.jproteome.5b00241]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26179671 72].
 +
#Selvan LD, Sreenivasamurthy SK, Kumar S, Yelamanchi SD, Madugundu AK, Anil AK, Renuse S, Nair BG, Gowda H, Mathur PP, Satishchandra P, Shankar SK, Mahadevan A, Keshava Prasad TS,  (2015) &quot;Characterization of host response to Cryptococcus neoformans through quantitative proteomic analysis of cryptococcal meningitis co-infected with HIV.&quot; <i>Mol Biosyst</i> <b>11</b>(9):2529&ndash;40; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26181685 26181685]; doi: [https://dx.doi.org/10.1039/c5mb00187k 10.1039/c5mb00187k]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26181685 1].
 +
#H&uuml;nten S, Kaller M, Drepper F, Oeljeklaus S, Bonfert T, Erhard F, Dueck A, Eichner N, Friedel CC, Meister G, Zimmer R, Warscheid B, Hermeking H,  (2015) &quot;p53-Regulated Networks of Protein, mRNA, miRNA, and lncRNA Expression Revealed by Integrated Pulsed Stable Isotope Labeling With Amino Acids in Cell Culture (pSILAC) and Next Generation Sequencing (NGS) Analyses.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(10):2609&ndash;29; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26183718 26183718]; doi: [https://dx.doi.org/10.1074/mcp.M115.050237 10.1074/mcp.M115.050237]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26183718 120].
 +
#Bish R, Cuevas-Polo N, Cheng Z, Hambardzumyan D, Munschauer M, Landthaler M, Vogel C,  (2015) &quot;Comprehensive Protein Interactome Analysis of a Key RNA Helicase: Detection of Novel Stress Granule Proteins.&quot; <i>Biomolecules</i> <b>5</b>(3):1441&ndash;66; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26184334 26184334]; doi: [https://dx.doi.org/10.3390/biom5031441 10.3390/biom5031441]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26184334 50].
 +
#Nystr&ouml;m A, Thriene K, Mittapalli V, Kern JS, Kiritsi D, Dengjel J, Bruckner-Tuderman L,  (2015) &quot;Losartan ameliorates dystrophic epidermolysis bullosa and uncovers new disease mechanisms.&quot; <i>EMBO Mol Med</i> <b>7</b>(9):1211&ndash;28; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26194911 26194911]; doi: [https://dx.doi.org/10.15252/emmm.201505061 10.15252/emmm.201505061]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26194911 110].
 +
#Zheng B, Zhao D, Zhang P, Shen C, Guo Y, Zhou T, Guo X, Zhou Z, Sha J,  (2015) &quot;Quantitative Proteomics Reveals the Essential Roles of Stromal Interaction Molecule 1 (STIM1) in the Testicular Cord Formation in Mouse Testis.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(10):2682&ndash;91; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26199344 26199344]; doi: [https://dx.doi.org/10.1074/mcp.M115.049569 10.1074/mcp.M115.049569]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26199344 2].
 +
#Wang IX, Ramrattan G, Cheung VG,  (2015) &quot;Genetic variation in insulin-induced kinase signaling.&quot; <i>Mol Syst Biol</i> <b>11</b>(7):820; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26202599 26202599]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26202599 46].
 +
#Corradini E, Klaasse G, Leurs U, Heck AJ, Martin NI, Scholten A,  (2015) &quot;Charting the interactome of PDE3A in human cells using an IBMX based chemical proteomics approach.&quot; <i>Mol Biosyst</i> <b>11</b>(10):2786&ndash;97; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26205238 26205238]; doi: [https://dx.doi.org/10.1039/c5mb00142k 10.1039/c5mb00142k]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26205238 47].
 +
#Courtney DG, Poulsen ET, Kennedy S, Moore JE, Atkinson SD, Maurizi E, Nesbit MA, Moore CB, Enghild JJ,  (2015) &quot;Protein Composition of TGFBI-R124C- and TGFBI-R555W-Associated Aggregates Suggests Multiple Mechanisms Leading to Lattice and Granular Corneal Dystrophy.&quot; <i>Invest Ophthalmol Vis Sci</i> <b>56</b>(8):4653&ndash;61; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26207300 26207300]; doi: [https://dx.doi.org/10.1167/iovs.15-16922 10.1167/iovs.15-16922]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26207300 39].
 +
#D&iacute;ez P, Droste C, D&eacute;gano RM, Gonz&aacute;lez-Mu&ntilde;oz M, Ibarrola N, P&eacute;rez-Andr&eacute;s M, Garin-Muga A, Segura V, Marko-Varga G, LaBaer J, Orfao A, Corrales FJ, De Las Rivas J, Fuentes M,  (2015) &quot;Integration of Proteomics and Transcriptomics Data Sets for the Analysis of a Lymphoma B-Cell Line in the Context of the Chromosome-Centric Human Proteome Project.&quot; <i>J Proteome Res</i> <b>14</b>(9):3530&ndash;40; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26216070 26216070]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00474 10.1021/acs.jproteome.5b00474]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26216070 60].
 +
#Golizeh M, Schneider C, Ohlund LB, Sleno L,  (2015) &quot;Dataset from proteomic analysis of rat, mouse, and human liver microsomes and S9 fractions.&quot; <i>Data Brief</i> <b>3</b>:95&ndash;8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26217725 26217725]; doi: [https://dx.doi.org/10.1016/j.dib.2015.02.007 10.1016/j.dib.2015.02.007]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26217725 4].
 +
#Berger ST, Ahmed S, Muntel J, Cuevas Polo N, Bachur R, Kentsis A, Steen J, Steen H,  (2015) &quot;MStern Blotting-High Throughput Polyvinylidene Fluoride (PVDF) Membrane-Based Proteomic Sample Preparation for 96-Well Plates.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(10):2814&ndash;23; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26223766 26223766]; doi: [https://dx.doi.org/10.1074/mcp.O115.049650 10.1074/mcp.O115.049650]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26223766 113].
 +
#Woo J, Han D, Park J, Kim SJ, Kim Y,  (2015) &quot;In-depth characterization of the secretome of mouse CNS cell lines by LC-MS/MS without prefractionation.&quot; <i>Proteomics</i> <b>15</b>(21):3617&ndash;22; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26227174 26227174]; doi: [https://dx.doi.org/10.1002/pmic.201400623 10.1002/pmic.201400623]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26227174 27].
 +
#Guo H, Garcia-Vedrenne AE, Isserlin R, Lugowski A, Morada A, Sun A, Miao Y, Kuzmanov U, Wan C, Ma H, Foltz K, Emili A,  (2015) &quot;Phosphoproteomic network analysis in the sea urchin Strongylocentrotus purpuratus reveals new candidates in egg activation.&quot; <i>Proteomics</i> <b>15</b>(23-24):4080&ndash;95; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26227301 26227301]; doi: [https://dx.doi.org/10.1002/pmic.201500159 10.1002/pmic.201500159]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26227301 182].
 +
#Na YR, Hong JH, Lee MY, Jung JH, Jung D, Kim YW, Son D, Choi M, Kim KP, Seok SH 2nd,  (2015) &quot;Proteomic Analysis Reveals Distinct Metabolic Differences Between Granulocyte-Macrophage Colony Stimulating Factor (GM-CSF) and Macrophage Colony Stimulating Factor (M-CSF) Grown Macrophages Derived from Murine Bone Marrow Cells.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(10):2722&ndash;32; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26229149 26229149]; doi: [https://dx.doi.org/10.1074/mcp.M115.048744 10.1074/mcp.M115.048744]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26229149 16].
 +
#Haurogn&eacute; K, Pavlovic M, Rogniaux H, Bach JM, Lieubeau B,  (2015) &quot;Type 1 Diabetes Prone NOD Mice Have Diminished Cxcr1 mRNA Expression in Polymorphonuclear Neutrophils and CD4+ T Lymphocytes.&quot; <i>PLoS One</i> <b>10</b>(7):e0134365; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26230114 26230114]; doi: [https://dx.doi.org/10.1371/journal.pone.0134365 10.1371/journal.pone.0134365]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26230114 12].
 +
#Subasic D, Br&uuml;mmer A, Wu Y, Pinto SM, Imig J, Keller M, Jovanovic M, Lightfoot HL, Nasso S, Goetze S, Brunner E, Hall J, Aebersold R, Zavolan M, Hengartner MO,  (2015) &quot;Cooperative target mRNA destabilization and translation inhibition by miR-58 microRNA family in C. elegans.&quot; <i>Genome Res</i> <b>25</b>(11):1680&ndash;91; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26232411 26232411]; doi: [https://dx.doi.org/10.1101/gr.183160.114 10.1101/gr.183160.114]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26232411 52].
 +
#Wi&#x15B;niewski JR, Du&#x15B;-Szachniewicz K, Ostasiewicz P, Zi&oacute;&#x142;kowski P, Rakus D, Mann M,  (2015) &quot;Absolute Proteome Analysis of Colorectal Mucosa, Adenoma, and Cancer Reveals Drastic Changes in Fatty Acid Metabolism and Plasma Membrane Transporters.&quot; <i>J Proteome Res</i> <b>14</b>(9):4005&ndash;18; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26245529 26245529]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00523 10.1021/acs.jproteome.5b00523]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26245529 184].
 +
#Hou J, Wang X, McShane E, Zauber H, Sun W, Selbach M, Chen W,  (2015) &quot;Extensive allele-specific translational regulation in hybrid mice.&quot; <i>Mol Syst Biol</i> <b>11</b>(8):825; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26253569 26253569]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26253569 3].
 +
#Shah P, Wang X, Yang W, Toghi Eshghi S, Sun S, Hoti N, Chen L, Yang S, Pasay J, Rubin A, Zhang H,  (2015) &quot;Integrated Proteomic and Glycoproteomic Analyses of Prostate Cancer Cells Reveal Glycoprotein Alteration in Protein Abundance and Glycosylation.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(10):2753&ndash;63; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26256267 26256267]; doi: [https://dx.doi.org/10.1074/mcp.M115.047928 10.1074/mcp.M115.047928]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26256267 24].
 +
#Toledo A, P&eacute;rez A, Coleman JL, Benach JL,  (2015) &quot;The lipid raft proteome of Borrelia burgdorferi.&quot; <i>Proteomics</i> <b>15</b>(21):3662&ndash;75; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26256460 26256460]; doi: [https://dx.doi.org/10.1002/pmic.201500093 10.1002/pmic.201500093]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26256460 18].
 +
#Kwon OK, Lee W, Kim SJ, Lee YM, Lee JY, Kim JY, Bae JS, Lee S,  (2015) &quot;In-depth proteomics approach of secretome to identify novel biomarker for sepsis in LPS-stimulated endothelial cells.&quot; <i>Electrophoresis</i> <b>36</b>(23):2851&ndash;8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26257168 26257168]; doi: [https://dx.doi.org/10.1002/elps.201500198 10.1002/elps.201500198]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26257168 4].
 +
#He P, Zhao L, Zhu L, Weinman EJ, De Giorgio R, Koval M, Srinivasan S, Yun CC,  (2015) &quot;Restoration of Na+/H+ exchanger NHE3-containing macrocomplexes ameliorates diabetes-associated fluid loss.&quot; <i>J Clin Invest</i> <b>125</b>(9):3519&ndash;31; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26258413 26258413]; doi: [https://dx.doi.org/10.1172/JCI79552 10.1172/JCI79552]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26258413 20].
 +
#Chen L, Li J, Guo T, Ghosh S, Koh SK, Tian D, Zhang L, Jia D, Beuerman RW, Aebersold R, Chan EC, Zhou L,  (2015) &quot;Global Metabonomic and Proteomic Analysis of Human Conjunctival Epithelial Cells (IOBA-NHC) in Response to Hyperosmotic Stress.&quot; <i>J Proteome Res</i> <b>14</b>(9):3982&ndash;95; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26260330 26260330]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00443 10.1021/acs.jproteome.5b00443]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26260330 3].
 +
#Dubois L, Ronquist KK, Ek B, Ronquist G, Larsson A,  (2015) &quot;Proteomic Profiling of Detergent Resistant Membranes (Lipid Rafts) of Prostasomes.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(11):3015&ndash;22; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26272980 26272980]; doi: [https://dx.doi.org/10.1074/mcp.M114.047530 10.1074/mcp.M114.047530]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26272980 1].
 +
#Houser JR, Barnhart C, Boutz DR, Carroll SM, Dasgupta A, Michener JK, Needham BD, Papoulas O, Sridhara V, Sydykova DK, Marx CJ, Trent MS, Barrick JE, Marcotte EM, Wilke CO,  (2015) &quot;Controlled Measurement and Comparative Analysis of Cellular Components in E. coli Reveals Broad Regulatory Changes in Response to Glucose Starvation.&quot; <i>PLoS Comput Biol</i> <b>11</b>(8):e1004400; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26275208 26275208]; doi: [https://dx.doi.org/10.1371/journal.pcbi.1004400 10.1371/journal.pcbi.1004400]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26275208 54].
 +
#Kauko O, Laajala TD, Jumppanen M, Hintsanen P, Suni V, Haapaniemi P, Corthals G, Aittokallio T, Westermarck J, Imanishi SY,  (2015) &quot;Label-free quantitative phosphoproteomics with novel pairwise abundance normalization reveals synergistic RAS and CIP2A signaling.&quot; <i>Sci Rep</i> <b>5</b>:13099; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26278961 26278961]; doi: [https://dx.doi.org/10.1038/srep13099 10.1038/srep13099]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26278961 30].
 +
#Humphrey SJ, Azimifar SB, Mann M,  (2015) &quot;High-throughput phosphoproteomics reveals in vivo insulin signaling dynamics.&quot; <i>Nat Biotechnol</i> <b>33</b>(9):990&ndash;5; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26280412 26280412]; doi: [https://dx.doi.org/10.1038/nbt.3327 10.1038/nbt.3327]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26280412 199].
 +
#Zhang Y, Li Q, Wu F, Zhou R, Qi Y, Su N, Chen L, Xu S, Jiang T, Zhang C, Cheng G, Chen X, Kong D, Wang Y, Zhang T, Zi J, Wei W, Gao Y, Zhen B, Xiong Z, Wu S, Yang P, Wang Q, Wen B, He F, Xu P, Liu S,  (2015) &quot;Tissue-Based Proteogenomics Reveals that Human Testis Endows Plentiful Missing Proteins.&quot; <i>J Proteome Res</i> <b>14</b>(9):3583&ndash;94; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26282447 26282447]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00435 10.1021/acs.jproteome.5b00435]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26282447 150].
 +
#De Marchi T, Liu NQ, Stingl C, Timmermans MA, Smid M, Look MP, Tjoa M, Braakman RB, Opdam M, Linn SC, Sweep FC, Span PN, Kliffen M, Luider TM, Foekens JA, Martens JW, Umar A,  (2016) &quot;4-protein signature predicting tamoxifen treatment outcome in recurrent breast cancer.&quot; <i>Mol Oncol</i> <b>10</b>(1):24&ndash;39; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26285647 26285647]; doi: [https://dx.doi.org/10.1016/j.molonc.2015.07.004 10.1016/j.molonc.2015.07.004]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26285647 112].
 +
#Haas S, Hansson J, Klimmeck D, Loeffler D, Velten L, Uckelmann H, Wurzer S, Prendergast &Aacute;M, Schnell A, Hexel K, Santarella-Mellwig R, Blaszkiewicz S, Kuck A, Geiger H, Milsom MD, Steinmetz LM, Schroeder T, Trumpp A, Krijgsveld J, Essers MA,  (2015) &quot;Inflammation-Induced Emergency Megakaryopoiesis Driven by Hematopoietic Stem Cell-like Megakaryocyte Progenitors.&quot; <i>Cell Stem Cell</i> <b>17</b>(4):422&ndash;34; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26299573 26299573]; doi: [https://dx.doi.org/10.1016/j.stem.2015.07.007 10.1016/j.stem.2015.07.007]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26299573 240].
 +
#Payne SH, Monroe ME, Overall CC, Kiebel GR, Degan M, Gibbons BC, Fujimoto GM, Purvine SO, Adkins JN, Lipton MS, Smith RD,  (2015) &quot;The Pacific Northwest National Laboratory library of bacterial and archaeal proteomic biodiversity.&quot; <i>Sci Data</i> <b>2</b>:150041; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26306205 26306205]; doi: [https://dx.doi.org/10.1038/sdata.2015.41 10.1038/sdata.2015.41]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26306205 19590].
 +
#Titz B, Sewer A, Schneider T, Elamin A, Martin F, Dijon S, Luettich K, Guedj E, Vuillaume G, Ivanov NV, Peck MJ, Chaudhary NI, Hoeng J, Peitsch MC,  (2015) &quot;Alterations in the sputum proteome and transcriptome in smokers and early-stage COPD subjects.&quot; <i>J Proteomics</i> <b>128</b>:306&ndash;20; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26306861 26306861]; doi: [https://dx.doi.org/10.1016/j.jprot.2015.08.009 10.1016/j.jprot.2015.08.009]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26306861 120].
 +
#Yang CR, Raghuram V, Emamian M, Sandoval PC, Knepper MA,  (2015) &quot;Deep proteomic profiling of vasopressin-sensitive collecting duct cells. II. Bioinformatic analysis of vasopressin signaling.&quot; <i>Am J Physiol Cell Physiol</i> <b>309</b>(12):C799&ndash;812; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26310817 26310817]; doi: [https://dx.doi.org/10.1152/ajpcell.00214.2015 10.1152/ajpcell.00214.2015]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26310817 257].
 +
#Deeb SJ, Tyanova S, Hummel M, Schmidt-Supprian M, Cox J, Mann M,  (2015) &quot;Machine Learning-based Classification of Diffuse Large B-cell Lymphoma Patients by Their Protein Expression Profiles.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(11):2947&ndash;60; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26311899 26311899]; doi: [https://dx.doi.org/10.1074/mcp.M115.050245 10.1074/mcp.M115.050245]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26311899 20].
 +
#Benoit I, Zhou M, Vivas Duarte A, Downes DJ, Todd RB, Kloezen W, Post H, Heck AJ, Maarten Altelaar AF, de Vries RP,  (2015) &quot;Spatial differentiation of gene expression in Aspergillus niger colony grown for sugar beet pulp utilization.&quot; <i>Sci Rep</i> <b>5</b>:13592; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26314379 26314379]; doi: [https://dx.doi.org/10.1038/srep13592 10.1038/srep13592]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26314379 10].
 +
#Shrivastava AN, Redeker V, Fritz N, Pieri L, Almeida LG, Spolidoro M, Liebmann T, Bousset L, Renner M, L&eacute;na C, Aperia A, Melki R, Triller A,  (2015) &quot;&alpha;-synuclein assemblies sequester neuronal &alpha;3-Na+/K+-ATPase and impair Na+ gradient.&quot; <i>EMBO J</i> <b>34</b>(19):2408&ndash;23; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26323479 26323479]; doi: [https://dx.doi.org/10.15252/embj.201591397 10.15252/embj.201591397]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26323479 23].
 +
#Grosche A, Hauser A, Lepper MF, Mayo R, von Toerne C, Merl-Pham J, Hauck SM,  (2016) &quot;The Proteome of Native Adult M&uuml;ller Glial Cells From Murine Retina.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(2):462&ndash;80; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26324419 26324419]; doi: [https://dx.doi.org/10.1074/mcp.M115.052183 10.1074/mcp.M115.052183]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26324419 40].
 +
#Chu XL, Feng MG, Ying SH,  (2016) &quot;Qualitative ubiquitome unveils the potential significances of protein lysine ubiquitination in hyphal growth of Aspergillus nidulans.&quot; <i>Curr Genet</i> <b>62</b>(1):191&ndash;201; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26328806 26328806]; doi: [https://dx.doi.org/10.1007/s00294-015-0517-7 10.1007/s00294-015-0517-7]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26328806 1].
 +
#Wu X, Zahari MS, Renuse S, Nirujogi RS, Kim MS, Manda SS, Stearns V, Gabrielson E, Sukumar S, Pandey A,  (2015) &quot;Phosphoproteomic Analysis Identifies Focal Adhesion Kinase 2 (FAK2) as a Potential Therapeutic Target for Tamoxifen Resistance in Breast Cancer.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(11):2887&ndash;900; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26330541 26330541]; doi: [https://dx.doi.org/10.1074/mcp.M115.050484 10.1074/mcp.M115.050484]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26330541 29].
 +
#Duhamel M, Rodet F, Delhem N, Vanden Abeele F, Kobeissy F, Nataf S, Pays L, Desjardins R, Gagnon H, Wisztorski M, Fournier I, Day R, Salzet M,  (2015) &quot;Molecular Consequences of Proprotein Convertase 1/3 (PC1/3) Inhibition in Macrophages for Application to Cancer Immunotherapy: A Proteomic Study.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(11):2857&ndash;77; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26330543 26330543]; doi: [https://dx.doi.org/10.1074/mcp.M115.052480 10.1074/mcp.M115.052480]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26330543 18].
 +
#Liebensteiner MG, Pinkse MW, Nijsse B, Verhaert PD, Tsesmetzis N, Stams AJ, Lomans BP,  (2015) &quot;Perchlorate and chlorate reduction by the Crenarchaeon Aeropyrum pernix and two thermophilic Firmicutes.&quot; <i>Environ Microbiol Rep</i> <b>7</b>(6):936&ndash;45; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26332065 26332065]; doi: [https://dx.doi.org/10.1111/1758-2229.12335 10.1111/1758-2229.12335]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26332065 12].
 +
#Lluch-Senar M, Cozzuto L, Cano J, Delgado J, Ll&oacute;rens-Rico V, Pereyre S, Bebear C, Serrano L,  (2015) &quot;Comparative &quot;-omics&quot; in Mycoplasma pneumoniae Clinical Isolates Reveals Key Virulence Factors.&quot; <i>PLoS One</i> <b>10</b>(9):e0137354; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26335586 26335586]; doi: [https://dx.doi.org/10.1371/journal.pone.0137354 10.1371/journal.pone.0137354]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26335586 25].
 +
#White CH, Johnston HE, Moesker B, Manousopoulou A, Margolis DM, Richman DD, Spina CA, Garbis SD, Woelk CH, Beliakova-Bethell N,  (2015) &quot;Mixed effects of suberoylanilide hydroxamic acid (SAHA) on the host transcriptome and proteome and their implications for HIV reactivation from latency.&quot; <i>Antiviral Res</i> <b>123</b>:78&ndash;85; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26343910 26343910]; doi: [https://dx.doi.org/10.1016/j.antiviral.2015.09.002 10.1016/j.antiviral.2015.09.002]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26343910 172].
 +
#Wan C, Borgeson B, Phanse S, Tu F, Drew K, Clark G, Xiong X, Kagan O, Kwan J, Bezginov A, Chessman K, Pal S, Cromar G, Papoulas O, Ni Z, Boutz DR, Stoilova S, Havugimana PC, Guo X, Malty RH, Sarov M, Greenblatt J, Babu M, Derry WB, Tillier ER, Wallingford JB, Parkinson J, Marcotte EM, Emili A,  (2015) &quot;Panorama of ancient metazoan macromolecular complexes.&quot; <i>Nature</i> <b>525</b>(7569):339&ndash;44; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26344197 26344197]; doi: [https://dx.doi.org/10.1038/nature14877 10.1038/nature14877]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26344197 4066].
 +
#Borgdorff H, Gautam R, Armstrong SD, Xia D, Ndayisaba GF, van Teijlingen NH, Geijtenbeek TB, Wastling JM, van de Wijgert JH,  (2016) &quot;Cervicovaginal microbiome dysbiosis is associated with proteome changes related to alterations of the cervicovaginal mucosal barrier.&quot; <i>Mucosal Immunol</i> <b>9</b>(3):621&ndash;33; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26349657 26349657]; doi: [https://dx.doi.org/10.1038/mi.2015.86 10.1038/mi.2015.86]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26349657 50].
 +
#Wu X, Zahari MS, Ma B, Liu R, Renuse S, Sahasrabuddhe NA, Chen L, Chaerkady R, Kim MS, Zhong J, Jelinek C, Barbhuiya MA, Leal-Rojas P, Yang Y, Kashyap MK, Marimuthu A, Ling M, Fackler MJ, Merino V, Zhang Z, Zahnow CA, Gabrielson E, Stearns V, Roa JC, Sukumar S, Gill PS, Pandey A,  (2015) &quot;Global phosphotyrosine survey in triple-negative breast cancer reveals activation of multiple tyrosine kinase signaling pathways.&quot; <i>Oncotarget</i> <b>6</b>(30):29143&ndash;60; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26356563 26356563]; doi: [https://dx.doi.org/10.18632/oncotarget.5020 10.18632/oncotarget.5020]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26356563 27].
 +
#Weinert BT, Moustafa T, Iesmantavicius V, Zechner R, Choudhary C,  (2015) &quot;Analysis of acetylation stoichiometry suggests that SIRT3 repairs nonenzymatic acetylation lesions.&quot; <i>EMBO J</i> <b>34</b>(21):2620&ndash;32; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26358839 26358839]; doi: [https://dx.doi.org/10.15252/embj.201591271 10.15252/embj.201591271]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26358839 142].
 +
#Grundner-Culemann K, Dybowski JN, Klammer M, Tebbe A, Schaab C, Daub H,  (2016) &quot;Comparative proteome analysis across non-small cell lung cancer cell lines.&quot; <i>J Proteomics</i> <b>130</b>:1&ndash;10; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26361996 26361996]; doi: [https://dx.doi.org/10.1016/j.jprot.2015.09.003 10.1016/j.jprot.2015.09.003]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26361996 23].
 +
#Mackowiak SD, Zauber H, Bielow C, Thiel D, Kutz K, Calviello L, Mastrobuoni G, Rajewsky N, Kempa S, Selbach M, Obermayer B,  (2015) &quot;Extensive identification and analysis of conserved small ORFs in animals.&quot; <i>Genome Biol</i> <b>16</b>:179; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26364619 26364619]; doi: [https://dx.doi.org/10.1186/s13059-015-0742-x 10.1186/s13059-015-0742-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26364619 19].
 +
#Preil SA, Kristensen LP, Beck HC, Jensen PS, Nielsen PS, Steiniche T, Bj&oslash;rling-Poulsen M, Larsen MR, Hansen ML, Rasmussen LM,  (2015) &quot;Quantitative Proteome Analysis Reveals Increased Content of Basement Membrane Proteins in Arteries From Patients With Type 2 Diabetes Mellitus and Lower Levels Among Metformin Users.&quot; <i>Circ Cardiovasc Genet</i> <b>8</b>(5):727&ndash;35; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26371159 26371159]; doi: [https://dx.doi.org/10.1161/CIRCGENETICS.115.001165 10.1161/CIRCGENETICS.115.001165]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26371159 19].
 +
#Lin MH, Sugiyama N, Ishihama Y,  (2015) &quot;Systematic profiling of the bacterial phosphoproteome reveals bacterium-specific features of phosphorylation.&quot; <i>Sci Signal</i> <b>8</b>(394):rs10; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26373674 26373674]; doi: [https://dx.doi.org/10.1126/scisignal.aaa3117 10.1126/scisignal.aaa3117]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26373674 73].
 +
#Park AJ, Murphy K, Surette MD, Bandoro C, Krieger JR, Taylor P, Khursigara CM,  (2015) &quot;Tracking the Dynamic Relationship between Cellular Systems and Extracellular Subproteomes in Pseudomonas aeruginosa Biofilms.&quot; <i>J Proteome Res</i> <b>14</b>(11):4524&ndash;37; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26378716 26378716]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00262 10.1021/acs.jproteome.5b00262]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26378716 34].
 +
#Ruprecht B, Zecha J, Heinzlmeir S, M&eacute;dard G, Lemeer S, Kuster B,  (2015) &quot;Evaluation of Kinase Activity Profiling Using Chemical Proteomics.&quot; <i>ACS Chem Biol</i> <b>10</b>(12):2743&ndash;52; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26378887 26378887]; doi: [https://dx.doi.org/10.1021/acschembio.5b00616 10.1021/acschembio.5b00616]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26378887 94].
 +
#Clark DJ, Fondrie WE, Liao Z, Hanson PI, Fulton A, Mao L, Yang AJ,  (2015) &quot;Redefining the Breast Cancer Exosome Proteome by Tandem Mass Tag Quantitative Proteomics and Multivariate Cluster Analysis.&quot; <i>Anal Chem</i> <b>87</b>(20):10462&ndash;9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26378940 26378940]; doi: [https://dx.doi.org/10.1021/acs.analchem.5b02586 10.1021/acs.analchem.5b02586]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26378940 2].
 +
#Kieselbach T, Zijnge V, Granstr&ouml;m E, Oscarsson J,  (2015) &quot;Proteomics of Aggregatibacter actinomycetemcomitans Outer Membrane Vesicles.&quot; <i>PLoS One</i> <b>10</b>(9):e0138591; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26381655 26381655]; doi: [https://dx.doi.org/10.1371/journal.pone.0138591 10.1371/journal.pone.0138591]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26381655 5].
 +
#Goris T, Schiffmann CL, Gadkari J, Schubert T, Seifert J, Jehmlich N, von Bergen M, Diekert G,  (2015) &quot;Proteomics of the organohalide-respiring Epsilonproteobacterium Sulfurospirillum multivorans adapted to tetrachloroethene and other energy substrates.&quot; <i>Sci Rep</i> <b>5</b>:13794; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26387727 26387727]; doi: [https://dx.doi.org/10.1038/srep13794 10.1038/srep13794]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26387727 36].
 +
#Creixell P, Schoof EM, Simpson CD, Longden J, Miller CJ, Lou HJ, Perryman L, Cox TR, Zivanovic N, Palmeri A, Wesolowska-Andersen A, Helmer-Citterich M, Ferkinghoff-Borg J, Itamochi H, Bodenmiller B, Erler JT, Turk BE, Linding R,  (2015) &quot;Kinome-wide decoding of network-attacking mutations rewiring cancer signaling.&quot; <i>Cell</i> <b>163</b>(1):202&ndash;17; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26388441 26388441]; doi: [https://dx.doi.org/10.1016/j.cell.2015.08.056 10.1016/j.cell.2015.08.056]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26388441 141].
 +
#Paulo JA, O&#39;Connell JD, Gaun A, Gygi SP,  (2015) &quot;Proteome-wide quantitative multiplexed profiling of protein expression: carbon-source dependency in Saccharomyces cerevisiae.&quot; <i>Mol Biol Cell</i> <b>26</b>(22):4063&ndash;74; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26399295 26399295]; doi: [https://dx.doi.org/10.1091/mbc.E15-07-0499 10.1091/mbc.E15-07-0499]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26399295 1].
 +
#Liu T, Tian CF, Chen WX,  (2015) &quot;Site-Specific Ser/Thr/Tyr Phosphoproteome of Sinorhizobium meliloti at Stationary Phase.&quot; <i>PLoS One</i> <b>10</b>(9):e0139143; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26401955 26401955]; doi: [https://dx.doi.org/10.1371/journal.pone.0139143 10.1371/journal.pone.0139143]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26401955 2].
 +
#Li S, Dislich B, Brakebusch CH, Lichtenthaler SF, Brocker T,  (2015) &quot;Control of Homeostasis and Dendritic Cell Survival by the GTPase RhoA.&quot; <i>J Immunol</i> <b>195</b>(9):4244&ndash;56; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26408665 26408665]; doi: [https://dx.doi.org/10.4049/jimmunol.1500676 10.4049/jimmunol.1500676]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26408665 60].
 +
#Beckley JR, Chen JS, Yang Y, Peng J, Gould KL,  (2015) &quot;A Degenerate Cohort of Yeast Membrane Trafficking DUBs Mediates Cell Polarity and Survival.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(12):3132&ndash;41; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26412298 26412298]; doi: [https://dx.doi.org/10.1074/mcp.M115.050039 10.1074/mcp.M115.050039]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26412298 246].
 +
#Glatter T, Ahrn&eacute; E, Schmidt A,  (2015) &quot;Comparison of Different Sample Preparation Protocols Reveals Lysis Buffer-Specific Extraction Biases in Gram-Negative Bacteria and Human Cells.&quot; <i>J Proteome Res</i> <b>14</b>(11):4472&ndash;85; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26412744 26412744]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00654 10.1021/acs.jproteome.5b00654]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26412744 934].
 +
#Hadley KC, Rakhit R, Guo H, Sun Y, Jonkman JE, McLaurin J, Hazrati LN, Emili A, Chakrabartty A,  (2015) &quot;Determining composition of micron-scale protein deposits in neurodegenerative disease by spatially targeted optical microproteomics.&quot; <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26418743 26418743]; doi: [https://dx.doi.org/10.7554/eLife.09579 10.7554/eLife.09579]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26418743 12].
 +
#Gallart-Palau X, Serra A, Wong AS, Sandin S, Lai MK, Chen CP, Kon OL, Sze SK,  (2015) &quot;Extracellular vesicles are rapidly purified from human plasma by PRotein Organic Solvent PRecipitation (PROSPR).&quot; <i>Sci Rep</i> <b>5</b>:14664; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26419333 26419333]; doi: [https://dx.doi.org/10.1038/srep14664 10.1038/srep14664]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26419333 172].
 +
#Bell-Temin H, Culver-Cochran AE, Chaput D, Carlson CM, Kuehl M, Burkhardt BR, Bickford PC, Liu B, Stevens SM Jr,  (2015) &quot;Novel Molecular Insights into Classical and Alternative Activation States of Microglia as Revealed by Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC)-based Proteomics.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(12):3173&ndash;84; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26424600 26424600]; doi: [https://dx.doi.org/10.1074/mcp.M115.053926 10.1074/mcp.M115.053926]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26424600 12].
 +
#Vermillion KL, Jagtap P, Johnson JE, Griffin TJ, Andrews MT,  (2015) &quot;Characterizing Cardiac Molecular Mechanisms of Mammalian Hibernation via Quantitative Proteogenomics.&quot; <i>J Proteome Res</i> <b>14</b>(11):4792&ndash;804; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26435507 26435507]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00575 10.1021/acs.jproteome.5b00575]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26435507 3].
 +
#Alanko J, Mai A, Jacquemet G, Schauer K, Kaukonen R, Saari M, Goud B, Ivaska J,  (2015) &quot;Integrin endosomal signalling suppresses anoikis.&quot; <i>Nat Cell Biol</i> <b>17</b>(11):1412&ndash;21; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26436690 26436690]; doi: [https://dx.doi.org/10.1038/ncb3250 10.1038/ncb3250]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26436690 60].
 +
#Hoffman NJ, Parker BL, Chaudhuri R, Fisher-Wellman KH, Kleinert M, Humphrey SJ, Yang P, Holliday M, Trefely S, Fazakerley DJ, St&ouml;ckli J, Burchfield JG, Jensen TE, Jothi R, Kiens B, Wojtaszewski JF, Richter EA, James DE,  (2015) &quot;Global Phosphoproteomic Analysis of Human Skeletal Muscle Reveals a Network of Exercise-Regulated Kinases and AMPK Substrates.&quot; <i>Cell Metab</i> <b>22</b>(5):922&ndash;35; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26437602 26437602]; doi: [https://dx.doi.org/10.1016/j.cmet.2015.09.001 10.1016/j.cmet.2015.09.001]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26437602 28].
 +
#Matheson NJ, Sumner J, Wals K, Rapiteanu R, Weekes MP, Vigan R, Weinelt J, Schindler M, Antrobus R, Costa AS, Frezza C, Clish CB, Neil SJ, Lehner PJ,  (2015) &quot;Cell Surface Proteomic Map of HIV Infection Reveals Antagonism of Amino Acid Metabolism by Vpu and Nef.&quot; <i>Cell Host Microbe</i> <b>18</b>(4):409&ndash;23; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26439863 26439863]; doi: [https://dx.doi.org/10.1016/j.chom.2015.09.003 10.1016/j.chom.2015.09.003]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26439863 10].
 +
#Zhang H, Ramakrishnan SK, Triner D, Centofanti B, Maitra D, Gy&#x151;rffy B, Sebolt-Leopold JS, Dame MK, Varani J, Brenner DE, Fearon ER, Omary MB, Shah YM,  (2015) &quot;Tumor-selective proteotoxicity of verteporfin inhibits colon cancer progression independently of YAP1.&quot; <i>Sci Signal</i> <b>8</b>(397):ra98; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26443705 26443705]; doi: [https://dx.doi.org/10.1126/scisignal.aac5418 10.1126/scisignal.aac5418]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26443705 2].
 +
#Kwon OK, Kim SJ, Lee YM, Lee YH, Bae YS, Kim JY, Peng X, Cheng Z, Zhao Y, Lee S,  (2016) &quot;Global analysis of phosphoproteome dynamics in embryonic development of zebrafish (Danio rerio).&quot; <i>Proteomics</i> <b>16</b>(1):136&ndash;49; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26449285 26449285]; doi: [https://dx.doi.org/10.1002/pmic.201500017 10.1002/pmic.201500017]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26449285 32].
 +
#N&uacute;&ntilde;ez Galindo A, Kussmann M, Dayon L,  (2015) &quot;Proteomics of Cerebrospinal Fluid: Throughput and Robustness Using a Scalable Automated Analysis Pipeline for Biomarker Discovery.&quot; <i>Anal Chem</i> <b>87</b>(21):10755&ndash;61; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26452177 26452177]; doi: [https://dx.doi.org/10.1021/acs.analchem.5b02748 10.1021/acs.analchem.5b02748]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26452177 66].
 +
#Geddes JM, Croll D, Caza M, Stoynov N, Foster LJ, Kronstad JW,  (2015) &quot;Secretome profiling of Cryptococcus neoformans reveals regulation of a subset of virulence-associated proteins and potential biomarkers by protein kinase A.&quot; <i>BMC Microbiol</i> <b>15</b>:206; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26453029 26453029]; doi: [https://dx.doi.org/10.1186/s12866-015-0532-3 10.1186/s12866-015-0532-3]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26453029 48].
 +
#Gomez-Auli A, Hillebrand LE, Biniossek ML, Peters C, Reinheckel T, Schilling O,  (2016) &quot;Impact of cathepsin B on the interstitial fluid proteome of murine breast cancers.&quot; <i>Biochimie</i> <b>122</b>:88&ndash;98; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26455267 26455267]; doi: [https://dx.doi.org/10.1016/j.biochi.2015.10.009 10.1016/j.biochi.2015.10.009]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26455267 1].
 +
#Roos A, Kollipara L, Buchkremer S, Labisch T, Brauers E, Gatz C, Lentz C, Gerardo-Nava J, Weis J, Zahedi RP,  (2016) &quot;Cellular Signature of SIL1 Depletion: Disease Pathogenesis due to Alterations in Protein Composition Beyond the ER Machinery.&quot; <i>Mol Neurobiol</i> <b>53</b>(8):5527&ndash;41; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26468156 26468156]; doi: [https://dx.doi.org/10.1007/s12035-015-9456-z 10.1007/s12035-015-9456-z]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26468156 18].
 +
#Poli M, Ori A, Child T, Jaroudi S, Spath K, Beck M, Wells D,  (2015) &quot;Characterization and quantification of proteins secreted by single human embryos prior to implantation.&quot; <i>EMBO Mol Med</i> <b>7</b>(11):1465&ndash;79; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26471863 26471863]; doi: [https://dx.doi.org/10.15252/emmm.201505344 10.15252/emmm.201505344]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26471863 11].
 +
#Schlage P, Kockmann T, Sabino F, Kizhakkedathu JN, Auf dem Keller U,  (2015) &quot;Matrix Metalloproteinase 10 Degradomics in Keratinocytes and Epidermal Tissue Identifies Bioactive Substrates With Pleiotropic Functions.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(12):3234&ndash;46; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26475864 26475864]; doi: [https://dx.doi.org/10.1074/mcp.M115.053520 10.1074/mcp.M115.053520]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26475864 25].
 +
#Horton ER, Byron A, Askari JA, Ng DH, Millon-Fr&eacute;millon A, Robertson J, Koper EJ, Paul NR, Warwood S, Knight D, Humphries JD, Humphries MJ,  (2015) &quot;Definition of a consensus integrin adhesome and its dynamics during adhesion complex assembly and disassembly.&quot; <i>Nat Cell Biol</i> <b>17</b>(12):1577&ndash;87; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26479319 26479319]; doi: [https://dx.doi.org/10.1038/ncb3257 10.1038/ncb3257]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26479319 100].
 +
#Hein MY, Hubner NC, Poser I, Cox J, Nagaraj N, Toyoda Y, Gak IA, Weisswange I, Mansfeld J, Buchholz F, Hyman AA, Mann M,  (2015) &quot;A human interactome in three quantitative dimensions organized by stoichiometries and abundances.&quot; <i>Cell</i> <b>163</b>(3):712&ndash;23; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26496610 26496610]; doi: [https://dx.doi.org/10.1016/j.cell.2015.09.053 10.1016/j.cell.2015.09.053]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26496610 4296].
 +
#Isasa M, Rose CM, Elsasser S, Navarrete-Perea J, Paulo JA, Finley DJ, Gygi SP,  (2015) &quot;Multiplexed, Proteome-Wide Protein Expression Profiling: Yeast Deubiquitylating Enzyme Knockout Strains.&quot; <i>J Proteome Res</i> <b>14</b>(12):5306&ndash;17; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26503604 26503604]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00802 10.1021/acs.jproteome.5b00802]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26503604 4].
 +
#Hu CW, Hsu CL, Wang YC, Ishihama Y, Ku WC, Huang HC, Juan HF,  (2015) &quot;Temporal Phosphoproteome Dynamics Induced by an ATP Synthase Inhibitor Citreoviridin.&quot; <i>Mol Cell Proteomics</i> <b>14</b>(12):3284&ndash;98; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26503892 26503892]; doi: [https://dx.doi.org/10.1074/mcp.M115.051383 10.1074/mcp.M115.051383]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26503892 48].
 +
#O&#39;Connor HF, Lyon N, Leung JW, Agarwal P, Swaim CD, Miller KM, Huibregtse JM,  (2015) &quot;Ubiquitin-Activated Interaction Traps (UBAITs) identify E3 ligase binding partners.&quot; <i>EMBO Rep</i> <b>16</b>(12):1699&ndash;712; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26508657 26508657]; doi: [https://dx.doi.org/10.15252/embr.201540620 10.15252/embr.201540620]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26508657 74].
 +
#Golizeh M, LeBlanc A, Sleno L,  (2015) &quot;Identification of Acetaminophen Adducts of Rat Liver Microsomal Proteins using 2D-LC-MS/MS.&quot; <i>Chem Res Toxicol</i> <b>28</b>(11):2142&ndash;50; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26510387 26510387]; doi: [https://dx.doi.org/10.1021/acs.chemrestox.5b00317 10.1021/acs.chemrestox.5b00317]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26510387 6].
 +
#Soleilhavoup C, Riou C, Tsikis G, Labas V, Harichaux G, Kohnke P, Reynaud K, de Graaf SP, Gerard N, Druart X,  (2016) &quot;Proteomes of the Female Genital Tract During the Oestrous Cycle.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(1):93&ndash;108; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26518761 26518761]; doi: [https://dx.doi.org/10.1074/mcp.M115.052332 10.1074/mcp.M115.052332]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26518761 198].
 +
#Sharma K, Schmitt S, Bergner CG, Tyanova S, Kannaiyan N, Manrique-Hoyos N, Kongi K, Cantuti L, Hanisch UK, Philips MA, Rossner MJ, Mann M, Simons M,  (2015) &quot;Cell type- and brain region-resolved mouse brain proteome.&quot; <i>Nat Neurosci</i> <b>18</b>(12):1819&ndash;31; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26523646 26523646]; doi: [https://dx.doi.org/10.1038/nn.4160 10.1038/nn.4160]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26523646 99].
 +
#Traylen C, Ramasubramanyan S, Zuo J, Rowe M, Almohammad R, Heesom K, Sweet SM, Matthews DA, Sinclair AJ,  (2015) &quot;Identification of Epstein-Barr Virus Replication Proteins in Burkitt&#39;s Lymphoma Cells.&quot; <i>Pathogens</i> <b>4</b>(4):739&ndash;51; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26529022 26529022]; doi: [https://dx.doi.org/10.3390/pathogens4040739 10.3390/pathogens4040739]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26529022 1].
 +
#Parker BL, Thaysen-Andersen M, Fazakerley DJ, Holliday M, Packer NH, James DE,  (2016) &quot;Terminal Galactosylation and Sialylation Switching on Membrane Glycoproteins upon TNF-Alpha-Induced Insulin Resistance in Adipocytes.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(1):141&ndash;53; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26537798 26537798]; doi: [https://dx.doi.org/10.1074/mcp.M115.054221 10.1074/mcp.M115.054221]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26537798 39].
 +
#Elkon R, Loayza-Puch F, Korkmaz G, Lopes R, van Breugel PC, Bleijerveld OB, Altelaar AF, Wolf E, Lorenzin F, Eilers M, Agami R,  (2015) &quot;Myc coordinates transcription and translation to enhance transformation and suppress invasiveness.&quot; <i>EMBO Rep</i> <b>16</b>(12):1723&ndash;36; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26538417 26538417]; doi: [https://dx.doi.org/10.15252/embr.201540717 10.15252/embr.201540717]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26538417 3].
 +
#Stewart PA, Parapatics K, Welsh EA, M&uuml;ller AC, Cao H, Fang B, Koomen JM, Eschrich SA, Bennett KL, Haura EB,  (2015) &quot;A Pilot Proteogenomic Study with Data Integration Identifies MCT1 and GLUT1 as Prognostic Markers in Lung Adenocarcinoma.&quot; <i>PLoS One</i> <b>10</b>(11):e0142162; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26539827 26539827]; doi: [https://dx.doi.org/10.1371/journal.pone.0142162 10.1371/journal.pone.0142162]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26539827 50].
 +
#Mitchell CJ, Getnet D, Kim MS, Manda SS, Kumar P, Huang TC, Pinto SM, Nirujogi RS, Iwasaki M, Shaw PG, Wu X, Zhong J, Chaerkady R, Marimuthu A, Muthusamy B, Sahasrabuddhe NA, Raju R, Bowman C, Danilova L, Cutler J, Kelkar DS, Drake CG, Prasad TS, Marchionni L, Murakami PN, Scott AF, Shi L, Thierry-Mieg J, Thierry-Mieg D, Irizarry R, Cope L, Ishihama Y, Wang C, Gowda H, Pandey A,  (2015) &quot;A multi-omic analysis of human na&iuml;ve CD4+ T cells.&quot; <i>BMC Syst Biol</i> <b>9</b>:75; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26542228 26542228]; doi: [https://dx.doi.org/10.1186/s12918-015-0225-4 10.1186/s12918-015-0225-4]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26542228 14].
 +
#Aurass P, Gerlach T, Becher D, Voigt B, Karste S, Bernhardt J, Riedel K, Hecker M, Flieger A,  (2016) &quot;Life Stage-specific Proteomes of Legionella pneumophila Reveal a Highly Differential Abundance of Virulence-associated Dot/Icm effectors.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(1):177&ndash;200; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26545400 26545400]; doi: [https://dx.doi.org/10.1074/mcp.M115.053579 10.1074/mcp.M115.053579]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26545400 209].
 +
#Hwang H, Park GW, Kim KH, Lee JY, Lee HK, Ji ES, Park SK, Xu T, Yates JR 3rd, Kwon KH, Park YM, Lee HJ, Paik YK, Kim JY, Yoo JS,  (2015) &quot;Chromosome-Based Proteomic Study for Identifying Novel Protein Variants from Human Hippocampal Tissue Using Customized neXtProt and GENCODE Databases.&quot; <i>J Proteome Res</i> <b>14</b>(12):5028&ndash;37; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26549206 26549206]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00472 10.1021/acs.jproteome.5b00472]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26549206 1].
 +
#Bensaddek D, Narayan V, Nicolas A, Murillo AB, Gartner A, Kenyon CJ, Lamond AI,  (2016) &quot;Micro-proteomics with iterative data analysis: Proteome analysis in C. elegans at the single worm level.&quot; <i>Proteomics</i> <b>16</b>(3):381&ndash;92; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26552604 26552604]; doi: [https://dx.doi.org/10.1002/pmic.201500264 10.1002/pmic.201500264]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26552604 40].
 +
#Dimayacyac-Esleta BR, Tsai CF, Kitata RB, Lin PY, Choong WK, Lin TD, Wang YT, Weng SH, Yang PC, Arco SD, Sung TY, Chen YJ,  (2015) &quot;Rapid High-pH Reverse Phase StageTip for Sensitive Small-Scale Membrane Proteomic Profiling.&quot; <i>Anal Chem</i> <b>87</b>(24):12016&ndash;23; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26554430 26554430]; doi: [https://dx.doi.org/10.1021/acs.analchem.5b03639 10.1021/acs.analchem.5b03639]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26554430 14].
 +
#Kito K, Ito H, Nohara T, Ohnishi M, Ishibashi Y, Takeda D,  (2016) &quot;Yeast Interspecies Comparative Proteomics Reveals Divergence in Expression Profiles and Provides Insights into Proteome Resource Allocation and Evolutionary Roles of Gene Duplication.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(1):218&ndash;35; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26560065 26560065]; doi: [https://dx.doi.org/10.1074/mcp.M115.051854 10.1074/mcp.M115.051854]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26560065 150].
 +
#Zhao Y, Valbuena G, Walker DH, Gazi M, Hidalgo M, DeSousa R, Oteo JA, Goez Y, Brasier AR,  (2016) &quot;Endothelial Cell Proteomic Response to Rickettsia conorii Infection Reveals Activation of the Janus Kinase (JAK)-Signal Transducer and Activator of Transcription (STAT)-Inferferon Stimulated Gene (ISG)15 Pathway and Reprogramming Plasma Membrane Integrin/Cadherin Signaling.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(1):289&ndash;304; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26560068 26560068]; doi: [https://dx.doi.org/10.1074/mcp.M115.054361 10.1074/mcp.M115.054361]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26560068 7].
 +
#Tutakhel OA, Jele&#x144; S, Valdez-Flores M, Dimke H, Piersma SR, Jimenez CR, Deinum J, Lenders JW, Hoenderop JG, Bindels RJ,  (2016) &quot;Alternative splice variant of the thiazide-sensitive NaCl cotransporter: a novel player in renal salt handling.&quot; <i>Am J Physiol Renal Physiol</i> <b>310</b>(3):F204&ndash;16; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26561651 26561651]; doi: [https://dx.doi.org/10.1152/ajprenal.00429.2015 10.1152/ajprenal.00429.2015]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26561651 2].
 +
#Slavov N, Semrau S, Airoldi E, Budnik B, van Oudenaarden A,  (2015) &quot;Differential Stoichiometry among Core Ribosomal Proteins.&quot; <i>Cell Rep</i> <b>13</b>(5):865&ndash;73; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26565899 26565899]; doi: [https://dx.doi.org/10.1016/j.celrep.2015.09.056 10.1016/j.celrep.2015.09.056]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26565899 16].
 +
#Sun S, Shah P, Eshghi ST, Yang W, Trikannad N, Yang S, Chen L, Aiyetan P, H&ouml;ti N, Zhang Z, Chan DW, Zhang H,  (2016) &quot;Comprehensive analysis of protein glycosylation by solid-phase extraction of N-linked glycans and glycosite-containing peptides.&quot; <i>Nat Biotechnol</i> <b>34</b>(1):84&ndash;8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26571101 26571101]; doi: [https://dx.doi.org/10.1038/nbt.3403 10.1038/nbt.3403]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26571101 55].
 +
#Wagner SA, Oehler H, Voigt A, Dalic D, Freiwald A, Serve H, Beli P,  (2016) &quot;ATR inhibition rewires cellular signaling networks induced by replication stress.&quot; <i>Proteomics</i> <b>16</b>(3):402&ndash;16; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26572502 26572502]; doi: [https://dx.doi.org/10.1002/pmic.201500172 10.1002/pmic.201500172]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26572502 20].
 +
#Lichtman JS, Alsentzer E, Jaffe M, Sprockett D, Masutani E, Ikwa E, Fragiadakis GK, Clifford D, Huang BE, Sonnenburg JL, Huang KC, Elias JE,  (2016) &quot;The effect of microbial colonization on the host proteome varies by gastrointestinal location.&quot; <i>ISME J</i> <b>10</b>(5):1170&ndash;81; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26574685 26574685]; doi: [https://dx.doi.org/10.1038/ismej.2015.187 10.1038/ismej.2015.187]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26574685 45].
 +
#Latos PA, Sienerth AR, Murray A, Senner CE, Muto M, Ikawa M, Oxley D, Burge S, Cox BJ, Hemberger M,  (2015) &quot;Elf5-centered transcription factor hub controls trophoblast stem cell self-renewal and differentiation through stoichiometry-sensitive shifts in target gene networks.&quot; <i>Genes Dev</i> <b>29</b>(23):2435&ndash;48; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26584622 26584622]; doi: [https://dx.doi.org/10.1101/gad.268821.115 10.1101/gad.268821.115]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26584622 6].
 +
#Cundiff JK, McConnell EJ, Lohe KJ, Maria SD, McMahon RJ, Zhang Q,  (2016) &quot;Sensing Small Changes in Protein Abundance: Stimulation of Caco-2 Cells by Human Whey Proteins.&quot; <i>J Proteome Res</i> <b>15</b>(1):125&ndash;43; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26586228 26586228]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00597 10.1021/acs.jproteome.5b00597]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26586228 16].
 +
#Kudelko M, Chan CW, Sharma R, Yao Q, Lau E, Chu IK, Cheah KS, Tanner JA, Chan D,  (2016) &quot;Label-Free Quantitative Proteomics Reveals Survival Mechanisms Developed by Hypertrophic Chondrocytes under ER Stress.&quot; <i>J Proteome Res</i> <b>15</b>(1):86&ndash;99; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26587667 26587667]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00537 10.1021/acs.jproteome.5b00537]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26587667 30].
 +
#Dammeier S, Nahnsen S, Veit J, Wehner F, Ueffing M, Kohlbacher O,  (2016) &quot;Mass-Spectrometry-Based Proteomics Reveals Organ-Specific Expression Patterns To Be Used as Forensic Evidence.&quot; <i>J Proteome Res</i> <b>15</b>(1):182&ndash;92; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26593679 26593679]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00704 10.1021/acs.jproteome.5b00704]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26593679 88].
 +
#Basak T, Vega-Montoto L, Zimmerman LJ, Tabb DL, Hudson BG, Vanacore RM,  (2016) &quot;Comprehensive Characterization of Glycosylation and Hydroxylation of Basement Membrane Collagen IV by High-Resolution Mass Spectrometry.&quot; <i>J Proteome Res</i> <b>15</b>(1):245&ndash;58; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26593852 26593852]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00767 10.1021/acs.jproteome.5b00767]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26593852 26].
 +
#Leiser OP, Merkley ED, Clowers BH, Deatherage Kaiser BL, Lin A, Hutchison JR, Melville AM, Wagner DM, Keim PS, Foster JT, Kreuzer HW,  (2015) &quot;Investigation of Yersinia pestis Laboratory Adaptation through a Combined Genomics and Proteomics Approach.&quot; <i>PLoS One</i> <b>10</b>(11):e0142997; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26599979 26599979]; doi: [https://dx.doi.org/10.1371/journal.pone.0142997 10.1371/journal.pone.0142997]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26599979 169].
 +
#Broncel M, Serwa RA, Bunney TD, Katan M, Tate EW,  (2016) &quot;Global Profiling of Huntingtin-associated protein E (HYPE)-Mediated AMPylation through a Chemical Proteomic Approach.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(2):715&ndash;25; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26604261 26604261]; doi: [https://dx.doi.org/10.1074/mcp.O115.054429 10.1074/mcp.O115.054429]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26604261 56].
 +
#Pankow S, Bamberger C, Calzolari D, Mart&iacute;nez-Bartolom&eacute; S, Lavall&eacute;e-Adam M, Balch WE, Yates JR 3rd,  (2015) &quot;&#x2206;F508 CFTR interactome remodelling promotes rescue of cystic fibrosis.&quot; <i>Nature</i> <b>528</b>(7583):510&ndash;6; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26618866 26618866]; doi: [https://dx.doi.org/10.1038/nature15729 10.1038/nature15729]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26618866 56].
 +
#Kennedy JJ, Yan P, Zhao L, Ivey RG, Voytovich UJ, Moore HD, Lin C, Pogosova-Agadjanyan EL, Stirewalt DL, Reding KW, Whiteaker JR, Paulovich AG,  (2016) &quot;Immobilized Metal Affinity Chromatography Coupled to Multiple Reaction Monitoring Enables Reproducible Quantification of Phospho-signaling.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(2):726&ndash;39; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26621847 26621847]; doi: [https://dx.doi.org/10.1074/mcp.O115.054940 10.1074/mcp.O115.054940]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26621847 114].
 +
#Urfer M, Bogdanovic J, Lo Monte F, Moehle K, Zerbe K, Omasits U, Ahrens CH, Pessi G, Eberl L, Robinson JA,  (2016) &quot;A Peptidomimetic Antibiotic Targets Outer Membrane Proteins and Disrupts Selectively the Outer Membrane in Escherichia coli.&quot; <i>J Biol Chem</i> <b>291</b>(4):1921&ndash;32; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26627837 26627837]; doi: [https://dx.doi.org/10.1074/jbc.M115.691725 10.1074/jbc.M115.691725]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26627837 59].
 +
#Krogager TP, Nielsen LV, Kahveci D, Dyrlund TF, Scavenius C, Sanggaard KW, Enghild JJ,  (2015) &quot;Hepatocytes respond differently to major dietary trans fatty acid isomers, elaidic acid and trans-vaccenic acid.&quot; <i>Proteome Sci</i> <b>13</b>:31; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26628894 26628894]; doi: [https://dx.doi.org/10.1186/s12953-015-0084-3 10.1186/s12953-015-0084-3]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26628894 95].
 +
#Xu B, Xiong F, Tian R, Zhan S, Gao Y, Qiu W, Wang R, Ge W, Ma C,  (2016) &quot;Temporal lobe in human aging: A quantitative protein profiling study of samples from Chinese Human Brain Bank.&quot; <i>Exp Gerontol</i> <b>73</b>:31&ndash;41; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26631761 26631761]; doi: [https://dx.doi.org/10.1016/j.exger.2015.11.016 10.1016/j.exger.2015.11.016]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26631761 1].
 +
#Aguado BA, Wu JJ, Azarin SM, Nanavati D, Rao SS, Bushnell GG, Medicherla CB, Shea LD,  (2015) &quot;Secretome identification of immune cell factors mediating metastatic cell homing.&quot; <i>Sci Rep</i> <b>5</b>:17566; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26634905 26634905]; doi: [https://dx.doi.org/10.1038/srep17566 10.1038/srep17566]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26634905 6].
 +
#Whisenant TC, Peralta ER, Aarreberg LD, Gao NJ, Head SR, Ordoukhanian P, Williamson JR, Salomon DR,  (2015) &quot;The Activation-Induced Assembly of an RNA/Protein Interactome Centered on the Splicing Factor U2AF2 Regulates Gene Expression in Human CD4 T Cells.&quot; <i>PLoS One</i> <b>10</b>(12):e0144409; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26641092 26641092]; doi: [https://dx.doi.org/10.1371/journal.pone.0144409 10.1371/journal.pone.0144409]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26641092 19].
 +
#Padden J, Ahrens M, K&auml;lsch J, Bertram S, Megger DA, Bracht T, Eisenacher M, Kocabayoglu P, Meyer HE, Sipos B, Baba HA, Sitek B,  (2016) &quot;Immunohistochemical Markers Distinguishing Cholangiocellular Carcinoma (CCC) from Pancreatic Ductal Adenocarcinoma (PDAC) Discovered by Proteomic Analysis of Microdissected Cells.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(3):1072&ndash;82; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26644413 26644413]; doi: [https://dx.doi.org/10.1074/mcp.M115.054585 10.1074/mcp.M115.054585]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26644413 66].
 +
#Xu J, Gao J, Yu C, He H, Yang Y, Figeys D, Zhou H,  (2016) &quot;Development of Online pH Gradient-Eluted Strong Cation Exchange Nanoelectrospray-Tandem Mass Spectrometry for Proteomic Analysis Facilitating Basic and Histidine-Containing Peptides Identification.&quot; <i>Anal Chem</i> <b>88</b>(1):583&ndash;91; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26646553 26646553]; doi: [https://dx.doi.org/10.1021/acs.analchem.5b04000 10.1021/acs.analchem.5b04000]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26646553 6].
 +
#Iglesias-Gato D, Wikstr&ouml;m P, Tyanova S, Lavallee C, Thysell E, Carlsson J, H&auml;ggl&ouml;f C, Cox J, Andr&eacute;n O, Stattin P, Egevad L, Widmark A, Bjartell A, Collins CC, Bergh A, Geiger T, Mann M, Flores-Morales A,  (2016) &quot;The Proteome of Primary Prostate Cancer.&quot; <i>Eur Urol</i> <b>69</b>(5):942&ndash;52; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26651926 26651926]; doi: [https://dx.doi.org/10.1016/j.eururo.2015.10.053 10.1016/j.eururo.2015.10.053]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26651926 36].
 +
#Kasvandik S, Samuel K, Peters M, Eimre M, Peet N, Roost AM, Padrik L, Paju K, Peil L, Salumets A,  (2016) &quot;Deep Quantitative Proteomics Reveals Extensive Metabolic Reprogramming and Cancer-Like Changes of Ectopic Endometriotic Stromal Cells.&quot; <i>J Proteome Res</i> <b>15</b>(2):572&ndash;84; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26654049 26654049]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00965 10.1021/acs.jproteome.5b00965]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26654049 21].
 +
#Farina F, Gaillard J, Gu&eacute;rin C, Cout&eacute; Y, Sillibourne J, Blanchoin L, Th&eacute;ry M,  (2016) &quot;The centrosome is an actin-organizing centre.&quot; <i>Nat Cell Biol</i> <b>18</b>(1):65&ndash;75; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26655833 26655833]; doi: [https://dx.doi.org/10.1038/ncb3285 10.1038/ncb3285]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26655833 2].
 +
#Gigu&egrave;re SS, Guise AJ, Jean Beltran PM, Joshi PM, Greco TM, Quach OL, Kong J, Cristea IM,  (2016) &quot;The Proteomic Profile of Deleted in Breast Cancer 1 (DBC1) Interactions Points to a Multifaceted Regulation of Gene Expression.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(3):791&ndash;809; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26657080 26657080]; doi: [https://dx.doi.org/10.1074/mcp.M115.054619 10.1074/mcp.M115.054619]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26657080 109].
 +
#Su S, Zhu X, Lin L, Chen X, Wang Y, Zi J, Dong Y, Xie Y, Zhu Y, Zhang J, Zhu J, Xu D, Xu N, Lou X, Liu S,  (2015) &quot;Lowering endogenous cathepsin D abundance results in ROS accumulation and cell senescence.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26657266 26657266]; doi: [https://dx.doi.org/10.1074/mcp.M115.050179 10.1074/mcp.M115.050179]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26657266 154].
 +
#Park JM, Park JH, Mun DG, Bae J, Jung JH, Back S, Lee H, Kim H, Jung HJ, Kim HK, Lee H, Kim KP, Hwang D, Lee SW,  (2015) &quot;Integrated analysis of global proteome, phosphoproteome, and glycoproteome enables complementary interpretation of disease-related protein networks.&quot; <i>Sci Rep</i> <b>5</b>:18189; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26657352 26657352]; doi: [https://dx.doi.org/10.1038/srep18189 10.1038/srep18189]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26657352 144].
 +
#Chen M, Hu Y, Liu J, Wu Q, Zhang C, Yu J, Xiao J, Wei F, Wu J,  (2015) &quot;Improvement of genome assembly completeness and identification of novel full-length protein-coding genes by RNA-seq in the giant panda genome.&quot; <i>Sci Rep</i> <b>5</b>:18019; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26658305 26658305]; doi: [https://dx.doi.org/10.1038/srep18019 10.1038/srep18019]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26658305 36].
 +
#Mizuno Y, Nagano-Shoji M, Kubo S, Kawamura Y, Yoshida A, Kawasaki H, Nishiyama M, Yoshida M, Kosono S,  (2016) &quot;Altered acetylation and succinylation profiles in Corynebacterium glutamicum in response to conditions inducing glutamate overproduction.&quot; <i>Microbiologyopen</i> <b>5</b>(1):152&ndash;73; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26663479 26663479]; doi: [https://dx.doi.org/10.1002/mbo3.320 10.1002/mbo3.320]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26663479 10].
 +
#Ulaganathan VK, Sperl B, Rapp UR, Ullrich A,  (2015) &quot;Germline variant FGFR4 &thinsp;p.G388R exposes a membrane-proximal STAT3 binding site.&quot; <i>Nature</i> <b>528</b>(7583):570&ndash;4; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26675719 26675719]; doi: [https://dx.doi.org/10.1038/nature16449 10.1038/nature16449]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26675719 32].
 +
#Aronica L, Kasparek T, Ruchman D, Marquez Y, Cipak L, Cipakova I, Anrather D, Mikolaskova B, Radtke M, Sarkar S, Pai CC, Blaikley E, Walker C, Shen KF, Schroeder R, Barta A, Forsburg SL, Humphrey TC,  (2016) &quot;The spliceosome-associated protein Nrl1 suppresses homologous recombination-dependent R-loop formation in fission yeast.&quot; <i>Nucleic Acids Res</i> <b>44</b>(4):1703&ndash;17; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26682798 26682798]; doi: [https://dx.doi.org/10.1093/nar/gkv1473 10.1093/nar/gkv1473]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26682798 4].
 +
#Rudney JD, Jagtap PD, Reilly CS, Chen R, Markowski TW, Higgins L, Johnson JE, Griffin TJ,  (2015) &quot;Protein relative abundance patterns associated with sucrose-induced dysbiosis are conserved across taxonomically diverse oral microcosm biofilm models of dental caries.&quot; <i>Microbiome</i> <b>3</b>:69; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26684897 26684897]; doi: [https://dx.doi.org/10.1186/s40168-015-0136-z 10.1186/s40168-015-0136-z]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26684897 24].
 +
#Debaisieux S, Encheva V, Chakravarty P, Snijders AP, Schiavo G,  (2016) &quot;Analysis of Signaling Endosome Composition and Dynamics Using SILAC in Embryonic Stem Cell-Derived Neurons.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(2):542&ndash;57; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26685126 26685126]; doi: [https://dx.doi.org/10.1074/mcp.M115.051649 10.1074/mcp.M115.051649]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26685126 28].
 +
#Oberbach A, Adams V, Schlichting N, Heinrich M, Kullnick Y, Lehmann S, Lehmann S, Feder S, Correia JC, Mohr FW, V&ouml;lker U, Jehmlich N,  (2016) &quot;Proteome profiles of HDL particles of patients with chronic heart failure are associated with immune response and also include bacteria proteins.&quot; <i>Clin Chim Acta</i> <b>453</b>:114&ndash;22; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26688386 26688386]; doi: [https://dx.doi.org/10.1016/j.cca.2015.12.005 10.1016/j.cca.2015.12.005]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26688386 10].
 +
#Eitzinger N, Wagner V, Weisheit W, Geimer S, Boness D, Kreimer G, Mittag M,  (2015) &quot;Proteomic Analysis of a Fraction with Intact Eyespots of Chlamydomonas reinhardtii and Assignment of Protein Methylation.&quot; <i>Front Plant Sci</i> <b>6</b>:1085; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26697039 26697039]; doi: [https://dx.doi.org/10.3389/fpls.2015.01085 10.3389/fpls.2015.01085]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26697039 128].
 +
#Kozlov SV, Waardenberg AJ, Engholm-Keller K, Arthur JW, Graham ME, Lavin M,  (2016) &quot;Reactive Oxygen Species (ROS)-Activated ATM-Dependent Phosphorylation of Cytoplasmic Substrates Identified by Large-Scale Phosphoproteomics Screen.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(3):1032&ndash;47; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26699800 26699800]; doi: [https://dx.doi.org/10.1074/mcp.M115.055723 10.1074/mcp.M115.055723]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26699800 141].
 +
#El Ouaamari A, Dirice E, Gedeon N, Hu J, Zhou JY, Shirakawa J, Hou L, Goodman J, Karampelias C, Qiang G, Boucher J, Martinez R, Gritsenko MA, De Jesus DF, Kahraman S, Bhatt S, Smith RD, Beer HD, Jungtrakoon P, Gong Y, Goldfine AB, Liew CW, Doria A, Andersson O, Qian WJ, Remold-O&#39;Donnell E, Kulkarni RN,  (2016) &quot;SerpinB1 Promotes Pancreatic &beta; Cell Proliferation.&quot; <i>Cell Metab</i> <b>23</b>(1):194&ndash;205; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26701651 26701651]; doi: [https://dx.doi.org/10.1016/j.cmet.2015.12.001 10.1016/j.cmet.2015.12.001]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26701651 4].
 +
#Chong WM, Hsu SC, Kao WT, Lo CW, Lee KY, Shao JS, Chen YH, Chang J, Chen SS, Yu MJ,  (2016) &quot;Phosphoproteomics Identified an NS5A Phosphorylation Site Involved in Hepatitis C Virus Replication.&quot; <i>J Biol Chem</i> <b>291</b>(8):3918&ndash;31; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26702051 26702051]; doi: [https://dx.doi.org/10.1074/jbc.M115.675413 10.1074/jbc.M115.675413]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26702051 27].
 +
#Lluch-Senar M, Mancuso FM, Climente-Gonz&aacute;lez H, Pe&ntilde;a-Paz MI, Sabido E, Serrano L,  (2016) &quot;Rescuing discarded spectra: Full comprehensive analysis of a minimal proteome.&quot; <i>Proteomics</i> <b>16</b>(4):554&ndash;63; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26702875 26702875]; doi: [https://dx.doi.org/10.1002/pmic.201500187 10.1002/pmic.201500187]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26702875 2].
 +
#Thierry E, Guilligay D, Kosinski J, Bock T, Gaudon S, Round A, Pflug A, Hengrung N, El Omari K, Baudin F, Hart DJ, Beck M, Cusack S,  (2016) &quot;Influenza Polymerase Can Adopt an Alternative Configuration Involving a Radical Repacking of PB2 Domains.&quot; <i>Mol Cell</i> <b>61</b>(1):125&ndash;37; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26711008 26711008]; doi: [https://dx.doi.org/10.1016/j.molcel.2015.11.016 10.1016/j.molcel.2015.11.016]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26711008 44].
 +
#Vartanian S, Ma TP, Lee J, Haverty PM, Kirkpatrick DS, Yu K, Stokoe D,  (2016) &quot;Application of Mass Spectrometry Profiling to Establish Brusatol as an Inhibitor of Global Protein Synthesis.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(4):1220&ndash;31; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26711467 26711467]; doi: [https://dx.doi.org/10.1074/mcp.M115.055509 10.1074/mcp.M115.055509]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26711467 4].
 +
#Bode D, Yu L, Tate P, Pardo M, Choudhary J,  (2016) &quot;Characterization of Two Distinct Nucleosome Remodeling and Deacetylase (NuRD) Complex Assemblies in Embryonic Stem Cells.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(3):878&ndash;91; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26714524 26714524]; doi: [https://dx.doi.org/10.1074/mcp.M115.053207 10.1074/mcp.M115.053207]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26714524 179].
 +
#McAfee A, Harpur BA, Michaud S, Beavis RC, Kent CF, Zayed A, Foster LJ,  (2016) &quot;Toward an Upgraded Honey Bee (Apis mellifera L.) Genome Annotation Using Proteogenomics.&quot; <i>J Proteome Res</i> <b>15</b>(2):411&ndash;21; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26718741 26718741]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00589 10.1021/acs.jproteome.5b00589]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26718741 27].
 +
#Li Q, Chang Z, Oliveira G, Xiong M, Smith LM, Frey BL, Welham NV,  (2016) &quot;Protein turnover during in&nbsp;vitro tissue engineering.&quot; <i>Biomaterials</i> <b>81</b>:104&ndash;13; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26724458 26724458]; doi: [https://dx.doi.org/10.1016/j.biomaterials.2015.12.004 10.1016/j.biomaterials.2015.12.004]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26724458 66].
 +
#Tyanova S, Albrechtsen R, Kronqvist P, Cox J, Mann M, Geiger T,  (2016) &quot;Proteomic maps of breast cancer subtypes.&quot; <i>Nat Commun</i> <b>7</b>:10259; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26725330 26725330]; doi: [https://dx.doi.org/10.1038/ncomms10259 10.1038/ncomms10259]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26725330 255].
 +
#Laumont CM, Daouda T, Laverdure JP, Bonneil &Eacute;, Caron-Lizotte O, Hardy MP, Granados DP, Durette C, Lemieux S, Thibault P, Perreault C,  (2016) &quot;Global proteogenomic analysis of human MHC class I-associated peptides derived from non-canonical reading frames.&quot; <i>Nat Commun</i> <b>7</b>:10238; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26728094 26728094]; doi: [https://dx.doi.org/10.1038/ncomms10238 10.1038/ncomms10238]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26728094 35].
 +
#Guo Z, Kong Q, Liu C, Zhang S, Zou L, Yan F, Whitmire JK, Xiong Y, Chen X, Wan YY,  (2016) &quot;DCAF1 controls T-cell function via p53-dependent and -independent mechanisms.&quot; <i>Nat Commun</i> <b>7</b>:10307; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26728942 26728942]; doi: [https://dx.doi.org/10.1038/ncomms10307 10.1038/ncomms10307]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26728942 120].
 +
#Supper V, Schiller HB, Paster W, Forster F, Boul&egrave;gue C, Mitulovic G, Leksa V, Ohradanova-Repic A, Machacek C, Schatzlmaier P, Zlabinger GJ, Stockinger H,  (2016) &quot;Association of CD147 and Calcium Exporter PMCA4 Uncouples IL-2 Expression from Early TCR Signaling.&quot; <i>J Immunol</i> <b>196</b>(3):1387&ndash;99; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26729804 26729804]; doi: [https://dx.doi.org/10.4049/jimmunol.1501889 10.4049/jimmunol.1501889]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26729804 27].
 +
#Clark DJ, Fondrie WE, Yang A, Mao L,  (2016) &quot;Triple SILAC quantitative proteomic analysis reveals differential abundance of cell signaling proteins between normal and lung cancer-derived exosomes.&quot; <i>J Proteomics</i> <b>133</b>:161&ndash;9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26739763 26739763]; doi: [https://dx.doi.org/10.1016/j.jprot.2015.12.023 10.1016/j.jprot.2015.12.023]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26739763 3].
 +
#Walton A, Stes E, Cybulski N, Van Bel M, I&ntilde;igo S, Durand AN, Timmerman E, Heyman J, Pauwels L, De Veylder L, Goossens A, De Smet I, Coppens F, Goormachtig S, Gevaert K,  (2016) &quot;It&#39;s Time for Some &quot;Site&quot;-Seeing: Novel Tools to Monitor the Ubiquitin Landscape in Arabidopsis thaliana.&quot; <i>Plant Cell</i> <b>28</b>(1):6&ndash;16; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26744219 26744219]; doi: [https://dx.doi.org/10.1105/tpc.15.00878 10.1105/tpc.15.00878]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26744219 110].
 +
#Wandinger SK, Lahortiga I, Jacobs K, Klammer M, Jordan N, Elschenbroich S, Parade M, Jacoby E, Linders JT, Brehmer D, Cools J, Daub H,  (2016) &quot;Quantitative Phosphoproteomics Analysis of ERBB3/ERBB4 Signaling.&quot; <i>PLoS One</i> <b>11</b>(1):e0146100; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26745281 26745281]; doi: [https://dx.doi.org/10.1371/journal.pone.0146100 10.1371/journal.pone.0146100]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26745281 72].
 +
#Christoforou A, Mulvey CM, Breckels LM, Geladaki A, Hurrell T, Hayward PC, Naake T, Gatto L, Viner R, Martinez Arias A, Lilley KS,  (2016) &quot;A draft map of the mouse pluripotent stem cell spatial proteome.&quot; <i>Nat Commun</i> <b>7</b>:8992; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26754106 26754106]; doi: [https://dx.doi.org/10.1038/ncomms9992 10.1038/ncomms9992]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26754106 2].
 +
#Jin J, Tian R, Pasculescu A, Dai AY, Williton K, Taylor L, Savitski MM, Bantscheff M, Woodgett JR, Pawson T, Colwill K,  (2016) &quot;Mutational Analysis of Glycogen Synthase Kinase 3&beta; Protein Kinase Together with Kinome-Wide Binding and Stability Studies Suggests Context-Dependent Recognition of Kinases by the Chaperone Heat Shock Protein 90.&quot; <i>Mol Cell Biol</i> <b>36</b>(6):1007&ndash;18; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26755559 26755559]; doi: [https://dx.doi.org/10.1128/MCB.01045-15 10.1128/MCB.01045-15]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26755559 17].
 +
#So EC, Schroeder GN, Carson D, Mattheis C, Mousnier A, Broncel M, Tate EW, Frankel G,  (2016) &quot;The Rab-binding Profiles of Bacterial Virulence Factors during Infection.&quot; <i>J Biol Chem</i> <b>291</b>(11):5832&ndash;43; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26755725 26755725]; doi: [https://dx.doi.org/10.1074/jbc.M115.700930 10.1074/jbc.M115.700930]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26755725 60].
 +
#Geddes JM, Caza M, Croll D, Stoynov N, Foster LJ, Kronstad JW,  (2016) &quot;Analysis of the Protein Kinase A-Regulated Proteome of Cryptococcus neoformans Identifies a Role for the Ubiquitin-Proteasome Pathway in Capsule Formation.&quot; <i>MBio</i> <b>7</b>(1):e01862&ndash;15; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26758180 26758180]; doi: [https://dx.doi.org/10.1128/mBio.01862-15 10.1128/mBio.01862-15]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26758180 133].
 +
#Uren PJ, Bahrami-Samani E, de Araujo PR, Vogel C, Qiao M, Burns SC, Smith AD, Penalva LO,  (2016) &quot;High-throughput analyses of hnRNP H1 dissects its multi-functional aspect.&quot; <i>RNA Biol</i> <b>13</b>(4):400&ndash;11; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26760575 26760575]; doi: [https://dx.doi.org/10.1080/15476286.2015.1138030 10.1080/15476286.2015.1138030]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26760575 32].
 +
#Neubert P, Halim A, Zauser M, Essig A, Joshi HJ, Zatorska E, Larsen IS, Loibl M, Castells-Ballester J, Aebi M, Clausen H, Strahl S,  (2016) &quot;Mapping the O-Mannose Glycoproteome in Saccharomyces cerevisiae.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(4):1323&ndash;37; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26764011 26764011]; doi: [https://dx.doi.org/10.1074/mcp.M115.057505 10.1074/mcp.M115.057505]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26764011 6].
 +
#K&uuml;mper S, Mardakheh FK, McCarthy A, Yeo M, Stamp GW, Paul A, Worboys J, Sadok A, J&oslash;rgensen C, Guichard S, Marshall CJ,  (2016) &quot;Rho-associated kinase (ROCK) function is essential for cell cycle progression, senescence and tumorigenesis.&quot; <i>Elife</i> <b>5</b>:e12994; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26765561 26765561]; doi: [https://dx.doi.org/10.7554/eLife.12203 10.7554/eLife.12203]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26765561 28].
 +
#Ma Y, Gao J, Yin J, Gu L, Liu X, Chen S, Huang Q, Lu H, Yang Y, Zhou H, Wang Y, Peng Y,  (2016) &quot;Identification of a Novel Function of Adipocyte Plasma Membrane-Associated Protein (APMAP) in Gestational Diabetes Mellitus by Proteomic Analysis of Omental Adipose Tissue.&quot; <i>J Proteome Res</i> <b>15</b>(2):628&ndash;37; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26767403 26767403]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b01030 10.1021/acs.jproteome.5b01030]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26767403 12].
 +
#Mithoe SC, Ludwig C, Pel MJ, Cucinotta M, Casartelli A, Mbengue M, Sklenar J, Derbyshire P, Robatzek S, Pieterse CM, Aebersold R, Menke FL,  (2016) &quot;Attenuation of pattern recognition receptor signaling is mediated by a MAP kinase kinase kinase.&quot; <i>EMBO Rep</i> <b>17</b>(3):441&ndash;54; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26769563 26769563]; doi: [https://dx.doi.org/10.15252/embr.201540806 10.15252/embr.201540806]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26769563 64].
 +
#Kwiatkowski M, Wurlitzer M, Krutilin A, Kiani P, Nimer R, Omidi M, Mannaa A, Bussmann T, Bartkowiak K, Kruber S, Uschold S, Steffen P, L&uuml;bberstedt J, K&uuml;pker N, Petersen H, Knecht R, Hansen NO, Zarrine-Afsar A, Robertson WD, Miller RJ, Schl&uuml;ter H,  (2016) &quot;Homogenization of tissues via picosecond-infrared laser (PIRL) ablation: Giving a closer view on the in-vivo composition of protein species as compared to mechanical homogenization.&quot; <i>J Proteomics</i> <b>134</b>:193&ndash;202; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26778141 26778141]; doi: [https://dx.doi.org/10.1016/j.jprot.2015.12.029 10.1016/j.jprot.2015.12.029]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26778141 372].
 +
#Peleg S, Feller C, Forne I, Schiller E, S&eacute;vin DC, Schauer T, Regnard C, Straub T, Prestel M, Klima C, Schmitt Nogueira M, Becker L, Klopstock T, Sauer U, Becker PB, Imhof A, Ladurner AG,  (2016) &quot;Life span extension by targeting a link between metabolism and histone acetylation in Drosophila.&quot; <i>EMBO Rep</i> <b>17</b>(3):455&ndash;69; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26781291 26781291]; doi: [https://dx.doi.org/10.15252/embr.201541132 10.15252/embr.201541132]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26781291 20].
 +
#Kollipara L, Buchkremer S, Weis J, Brauers E, Hoss M, R&uuml;tten S, Caviedes P, Zahedi RP, Roos A,  (2016) &quot;Proteome Profiling and Ultrastructural Characterization of the Human RCMH Cell Line: Myoblastic Properties and Suitability for Myopathological Studies.&quot; <i>J Proteome Res</i> <b>15</b>(3):945&ndash;55; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26781476 26781476]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00972 10.1021/acs.jproteome.5b00972]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26781476 1].
 +
#Fang Y, Zhang Q, Wang X, Yang X, Wang X, Huang Z, Jiao Y, Wang J,  (2016) &quot;Quantitative phosphoproteomics reveals genistein as a modulator of cell cycle and DNA damage response pathways in triple-negative breast cancer cells.&quot; <i>Int J Oncol</i> <b>48</b>(3):1016&ndash;28; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26783066 26783066]; doi: [https://dx.doi.org/10.3892/ijo.2016.3327 10.3892/ijo.2016.3327]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26783066 2].
 +
#Cheng Z, Teo G, Krueger S, Rock TM, Koh HW, Choi H, Vogel C,  (2016) &quot;Differential dynamics of the mammalian mRNA and protein expression response to misfolding stress.&quot; <i>Mol Syst Biol</i> <b>12</b>(1):855; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26792871 26792871]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26792871 138].
 +
#Vincent D, Ezernieks V, Elkins A, Nguyen N, Moate PJ, Cocks BG, Rochfort S,  (2016) &quot;Milk Bottom-Up Proteomics: Method Optimization.&quot; <i>Front Genet</i> <b>6</b>:360; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26793233 26793233]; doi: [https://dx.doi.org/10.3389/fgene.2015.00360 10.3389/fgene.2015.00360]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26793233 262].
 +
#Li Q, Lex RK, Chung H, Giovanetti SM, Ji Z, Ji H, Person MD, Kim J, Vokes SA,  (2016) &quot;The Pluripotency Factor NANOG Binds to GLI Proteins and Represses Hedgehog-mediated Transcription.&quot; <i>J Biol Chem</i> <b>291</b>(13):7171&ndash;82; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26797124 26797124]; doi: [https://dx.doi.org/10.1074/jbc.M116.714857 10.1074/jbc.M116.714857]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26797124 10].
 +
#Sch&uuml;ller R, Forn&eacute; I, Straub T, Schreieck A, Texier Y, Shah N, Decker TM, Cramer P, Imhof A, Eick D,  (2016) &quot;Heptad-Specific Phosphorylation of RNA Polymerase II CTD.&quot; <i>Mol Cell</i> <b>61</b>(2):305&ndash;14; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26799765 26799765]; doi: [https://dx.doi.org/10.1016/j.molcel.2015.12.003 10.1016/j.molcel.2015.12.003]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26799765 209].
 +
#Wojtuszkiewicz A, Schuurhuis GJ, Kessler FL, Piersma SR, Knol JC, Pham TV, Jansen G, Musters RJ, van Meerloo J, Assaraf YG, Kaspers GJ, Zweegman S, Cloos J, Jimenez CR,  (2016) &quot;Exosomes Secreted by Apoptosis-Resistant Acute Myeloid Leukemia (AML) Blasts Harbor Regulatory Network Proteins Potentially Involved in Antagonism of Apoptosis.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(4):1281&ndash;98; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26801919 26801919]; doi: [https://dx.doi.org/10.1074/mcp.M115.052944 10.1074/mcp.M115.052944]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26801919 271].
 +
#Serra A, Zhu H, Gallart-Palau X, Park JE, Ho HH, Tam JP, Sze SK,  (2016) &quot;Plasma proteome coverage is increased by unique peptide recovery from sodium deoxycholate precipitate.&quot; <i>Anal Bioanal Chem</i> <b>408</b>(7):1963&ndash;73; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26804737 26804737]; doi: [https://dx.doi.org/10.1007/s00216-016-9312-7 10.1007/s00216-016-9312-7]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26804737 40].
 +
#Woodford MR, Truman AW, Dunn DM, Jensen SM, Cotran R, Bullard R, Abouelleil M, Beebe K, Wolfgeher D, Wierzbicki S, Post DE, Caza T, Tsutsumi S, Panaretou B, Kron SJ, Trepel JB, Landas S, Prodromou C, Shapiro O, Stetler-Stevenson WG, Bourboulia D, Neckers L, Bratslavsky G, Mollapour M,  (2016) &quot;Mps1 Mediated Phosphorylation of Hsp90 Confers Renal Cell Carcinoma Sensitivity and Selectivity to Hsp90 Inhibitors.&quot; <i>Cell Rep</i> <b>14</b>(4):872&ndash;84; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26804907 26804907]; doi: [https://dx.doi.org/10.1016/j.celrep.2015.12.084 10.1016/j.celrep.2015.12.084]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26804907 12].
 +
#V&ouml;lker-Albert MC, Pusch MC, Fedisch A, Schilcher P, Schmidt A, Imhof A,  (2016) &quot;A Quantitative Proteomic Analysis of In Vitro Assembled Chromatin.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(3):945&ndash;59; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26811354 26811354]; doi: [https://dx.doi.org/10.1074/mcp.M115.053553 10.1074/mcp.M115.053553]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26811354 12].
 +
#da Silva BF, Meng C, Helm D, Pachl F, Schiller J, Ibrahim E, Lynne CM, Brackett NL, Bertolla RP, Kuster B,  (2016) &quot;Towards Understanding Male Infertility After Spinal Cord Injury Using Quantitative Proteomics.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(4):1424&ndash;34; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26814186 26814186]; doi: [https://dx.doi.org/10.1074/mcp.M115.052175 10.1074/mcp.M115.052175]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26814186 504].
 +
#Coman C, Solari FA, Hentschel A, Sickmann A, Zahedi RP, Ahrends R,  (2016) &quot;Simultaneous Metabolite, Protein, Lipid Extraction (SIMPLEX): A Combinatorial Multimolecular Omics Approach for Systems Biology.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(4):1453&ndash;66; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26814187 26814187]; doi: [https://dx.doi.org/10.1074/mcp.M115.053702 10.1074/mcp.M115.053702]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26814187 68].
 +
#Bigaud E, Corrales FJ,  (2016) &quot;Methylthioadenosine (MTA) Regulates Liver Cells Proteome and Methylproteome: Implications in Liver Biology and Disease.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(5):1498&ndash;510; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26819315 26819315]; doi: [https://dx.doi.org/10.1074/mcp.M115.055772 10.1074/mcp.M115.055772]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26819315 3].
 +
#Aubert G, Martin OJ, Horton JL, Lai L, Vega RB, Leone TC, Koves T, Gardell SJ, Kr&uuml;ger M, Hoppel CL, Lewandowski ED, Crawford PA, Muoio DM, Kelly DP,  (2016) &quot;The Failing Heart Relies on Ketone Bodies as a Fuel.&quot; <i>Circulation</i> <b>133</b>(8):698&ndash;705; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26819376 26819376]; doi: [https://dx.doi.org/10.1161/CIRCULATIONAHA.115.017355 10.1161/CIRCULATIONAHA.115.017355]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26819376 115].
 +
#Kristensen TN, Kjeldal H, Schou MF, Nielsen JL,  (2016) &quot;Proteomic data reveal a physiological basis for costs and benefits associated with thermal acclimation.&quot; <i>J Exp Biol</i> <b>219</b>(Pt 7):969&ndash;76; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26823104 26823104]; doi: [https://dx.doi.org/10.1242/jeb.132696 10.1242/jeb.132696]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26823104 9].
 +
#Steger M, Tonelli F, Ito G, Davies P, Trost M, Vetter M, Wachter S, Lorentzen E, Duddy G, Wilson S, Baptista MA, Fiske BK, Fell MJ, Morrow JA, Reith AD, Alessi DR, Mann M,  (2016) &quot;Phosphoproteomics reveals that Parkinson&#39;s disease kinase LRRK2 regulates a subset of Rab GTPases.&quot; <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26824392 26824392]; doi: [https://dx.doi.org/10.7554/eLife.12813 10.7554/eLife.12813]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26824392 216].
 +
#Wi&#x15B;niewski JR, Vildhede A, Nor&eacute;n A, Artursson P,  (2016) &quot;In-depth quantitative analysis and comparison of the human hepatocyte and hepatoma cell line HepG2 proteomes.&quot; <i>J Proteomics</i> <b>136</b>:234&ndash;47; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26825538 26825538]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.01.016 10.1016/j.jprot.2016.01.016]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26825538 122].
 +
#Lichtman JS, Ferreyra JA, Ng KM, Smits SA, Sonnenburg JL, Elias JE,  (2016) &quot;Host-Microbiota Interactions in the Pathogenesis of Antibiotic-Associated Diseases.&quot; <i>Cell Rep</i> <b>14</b>(5):1049&ndash;61; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26832403 26832403]; doi: [https://dx.doi.org/10.1016/j.celrep.2016.01.009 10.1016/j.celrep.2016.01.009]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26832403 486].
 +
#Lechman ER, Gentner B, Ng SW, Schoof EM, van Galen P, Kennedy JA, Nucera S, Ciceri F, Kaufmann KB, Takayama N, Dobson SM, Trotman-Grant A, Krivdova G, Elzinga J, Mitchell A, Nilsson B, Hermans KG, Eppert K, Marke R, Isserlin R, Voisin V, Bader GD, Zandstra PW, Golub TR, Ebert BL, Lu J, Minden M, Wang JC, Naldini L, Dick JE,  (2016) &quot;miR-126 Regulates Distinct Self-Renewal Outcomes in Normal and Malignant Hematopoietic Stem Cells.&quot; <i>Cancer Cell</i> <b>29</b>(2):214&ndash;28; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26832662 26832662]; doi: [https://dx.doi.org/10.1016/j.ccell.2015.12.011 10.1016/j.ccell.2015.12.011]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26832662 72].
 +
#Horton ER, Humphries JD, Stutchbury B, Jacquemet G, Ballestrem C, Barry ST, Humphries MJ,  (2016) &quot;Modulation of FAK and Src adhesion signaling occurs independently of adhesion complex composition.&quot; <i>J Cell Biol</i> <b>212</b>(3):349&ndash;64; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26833789 26833789]; doi: [https://dx.doi.org/10.1083/jcb.201508080 10.1083/jcb.201508080]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26833789 9].
 +
#Zhang P, Kirby D, Dufresne C, Chen Y, Turner R, Ferri S, Edward DP, Van Eyk JE, Semba RD,  (2016) &quot;Defining the proteome of human iris, ciliary body, retinal pigment epithelium, and choroid.&quot; <i>Proteomics</i> <b>16</b>(7):1146&ndash;53; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26834087 26834087]; doi: [https://dx.doi.org/10.1002/pmic.201500188 10.1002/pmic.201500188]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26834087 180].
 +
#Long B, Muhamad R, Yan G, Yu J, Fan Q, Wang Z, Li X, Purnomoadi A, Achmadi J, Yan X,  (2016) &quot;Quantitative proteomics analysis reveals glutamine deprivation activates fatty acid &beta;-oxidation pathway in HepG2 cells.&quot; <i>Amino Acids</i> <b>48</b>(5):1297&ndash;307; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26837383 26837383]; doi: [https://dx.doi.org/10.1007/s00726-016-2182-7 10.1007/s00726-016-2182-7]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26837383 1].
 +
#Iwamoto N, D&#39;Alessandro LA, Depner S, Hahn B, Kramer BA, Lucarelli P, Vlasov A, Stepath M, B&ouml;hm ME, Deharde D, Damm G, Seehofer D, Lehmann WD, Klingm&uuml;ller U, Schilling M,  (2016) &quot;Context-specific flow through the MEK/ERK module produces cell- and ligand-specific patterns of ERK single and double phosphorylation.&quot; <i>Sci Signal</i> <b>9</b>(413):ra13; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26838549 26838549]; doi: [https://dx.doi.org/10.1126/scisignal.aab1967 10.1126/scisignal.aab1967]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26838549 66].
 +
#Tong M, Kleffmann T, Pradhan S, Johansson CL, DeSousa J, Stone PR, James JL, Chen Q, Chamley LW,  (2016) &quot;Proteomic characterization of macro-, micro- and nano-extracellular vesicles derived from the same first trimester placenta: relevance for feto-maternal communication.&quot; <i>Hum Reprod</i> <b>31</b>(4):687&ndash;99; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26839151 26839151]; doi: [https://dx.doi.org/10.1093/humrep/dew004 10.1093/humrep/dew004]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26839151 3].
 +
#Huang H, Yoo CY, Bindbeutel R, Goldsworthy J, Tielking A, Alvarez S, Naldrett MJ, Evans BS, Chen M, Nusinow DA,  (2016) &quot;PCH1 integrates circadian and light-signaling pathways to control photoperiod-responsive growth in Arabidopsis.&quot; <i>Elife</i> <b>5</b>:e13292; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26839287 26839287]; doi: [https://dx.doi.org/10.7554/eLife.13292 10.7554/eLife.13292]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26839287 9].
 +
#Thorpe CT, Peffers MJ, Simpson D, Halliwell E, Screen HR, Clegg PD,  (2016) &quot;Anatomical heterogeneity of tendon: Fascicular and interfascicular tendon compartments have distinct proteomic composition.&quot; <i>Sci Rep</i> <b>6</b>:20455; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26842662 26842662]; doi: [https://dx.doi.org/10.1038/srep20455 10.1038/srep20455]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26842662 20].
 +
#Chidiac R, Zhang Y, Tessier S, Faubert D, Delisle C, Gratton JP,  (2016) &quot;Comparative Phosphoproteomics Analysis of VEGF and Angiopoietin-1 Signaling Reveals ZO-1 as a Critical Regulator of Endothelial Cell Proliferation.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(5):1511&ndash;25; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26846344 26846344]; doi: [https://dx.doi.org/10.1074/mcp.M115.053298 10.1074/mcp.M115.053298]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26846344 13].
 +
#Meierhofer D, Halbach M, &#x15E;en NE, Gispert S, Auburger G,  (2016) &quot;Ataxin-2 (Atxn2)-Knock-Out Mice Show Branched Chain Amino Acids and Fatty Acids Pathway Alterations.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(5):1728&ndash;39; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26850065 26850065]; doi: [https://dx.doi.org/10.1074/mcp.M115.056770 10.1074/mcp.M115.056770]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26850065 48].
 +
#Aretz I, Hardt C, Wittig I, Meierhofer D,  (2016) &quot;An Impaired Respiratory Electron Chain Triggers Down-regulation of the Energy Metabolism and De-ubiquitination of Solute Carrier Amino Acid Transporters.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(5):1526&ndash;38; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26852163 26852163]; doi: [https://dx.doi.org/10.1074/mcp.M115.053181 10.1074/mcp.M115.053181]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26852163 60].
 +
#Peffers MJ, Collins J, Fang Y, Goljanek-Whysall K, Rushton M, Loughlin J, Proctor C, Clegg PD,  (2016) &quot;Age-related changes in mesenchymal stem cells identified using a multi-omics approach.&quot; <i>Eur Cell Mater</i> <b>31</b>:136&ndash;59; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26853623 26853623]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26853623 8].
 +
#Billing AM, Ben Hamidane H, Dib SS, Cotton RJ, Bhagwat AM, Kumar P, Hayat S, Yousri NA, Goswami N, Suhre K, Rafii A, Graumann J,  (2016) &quot;Comprehensive transcriptomic and proteomic characterization of human mesenchymal stem cells reveals source specific cellular markers.&quot; <i>Sci Rep</i> <b>6</b>:21507; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26857143 26857143]; doi: [https://dx.doi.org/10.1038/srep21507 10.1038/srep21507]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26857143 9].
 +
#Kowal J, Arras G, Colombo M, Jouve M, Morath JP, Primdal-Bengtson B, Dingli F, Loew D, Tkach M, Th&eacute;ry C,  (2016) &quot;Proteomic comparison defines novel markers to characterize heterogeneous populations of extracellular vesicle subtypes.&quot; <i>Proc Natl Acad Sci U S A</i> <b>113</b>(8):E968&ndash;77; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26858453 26858453]; doi: [https://dx.doi.org/10.1073/pnas.1521230113 10.1073/pnas.1521230113]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26858453 56].
 +
#Locard-Paulet M, Lim L, Veluscek G, McMahon K, Sinclair J, van Weverwijk A, Worboys JD, Yuan Y, Isacke CM, J&oslash;rgensen C,  (2016) &quot;Phosphoproteomic analysis of interacting tumor and endothelial cells identifies regulatory mechanisms of transendothelial migration.&quot; <i>Sci Signal</i> <b>9</b>(414):ra15; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26861043 26861043]; doi: [https://dx.doi.org/10.1126/scisignal.aac5820 10.1126/scisignal.aac5820]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26861043 76].
 +
#Prior KK, Wittig I, Leisegang MS, Groenendyk J, Weissmann N, Michalak M, Jansen-D&uuml;rr P, Shah AM, Brandes RP,  (2016) &quot;The Endoplasmic Reticulum Chaperone Calnexin Is a NADPH Oxidase NOX4 Interacting Protein.&quot; <i>J Biol Chem</i> <b>291</b>(13):7045&ndash;59; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26861875 26861875]; doi: [https://dx.doi.org/10.1074/jbc.M115.710772 10.1074/jbc.M115.710772]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26861875 120].
 +
#Ramus C, Hovasse A, Marcellin M, Hesse AM, Mouton-Barbosa E, Bouyssi&eacute; D, Vaca S, Carapito C, Chaoui K, Bruley C, Garin J, Cianf&eacute;rani S, Ferro M, Dorssaeler AV, Burlet-Schiltz O, Schaeffer C, Cout&eacute; Y, Gonzalez de Peredo A,  (2015) &quot;Spiked proteomic standard dataset for testing label-free quantitative software and statistical methods.&quot; <i>Data Brief</i> <b>6</b>:286&ndash;94; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26862574 26862574]; doi: [https://dx.doi.org/10.1016/j.dib.2015.11.063 10.1016/j.dib.2015.11.063]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26862574 27].
 +
#Sahebekhtiari N, Thomsen MM, Sloth JJ, Stenbroen V, Zeviani M, Gregersen N, Viscomi C, Palmfeldt J,  (2016) &quot;Quantitative proteomics suggests metabolic reprogramming during ETHE1 deficiency.&quot; <i>Proteomics</i> <b>16</b>(7):1166&ndash;76; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26867521 26867521]; doi: [https://dx.doi.org/10.1002/pmic.201500336 10.1002/pmic.201500336]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26867521 50].
 +
#Lamberti Y, Cafiero JH, Surmann K, Valdez H, Holubova J, Ve&#x10D;erek B, Sebo P, Schmidt F, V&ouml;lker U, Rodriguez ME,  (2016) &quot;Proteome analysis of Bordetella pertussis isolated from human macrophages.&quot; <i>J Proteomics</i> <b>136</b>:55&ndash;67; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26873878 26873878]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.02.002 10.1016/j.jprot.2016.02.002]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26873878 9].
 +
#Schneider RK, Schenone M, Ferreira MV, Kramann R, Joyce CE, Hartigan C, Beier F, Br&uuml;mmendorf TH, Germing U, Platzbecker U, B&uuml;sche G, Kn&uuml;chel R, Chen MC, Waters CS, Chen E, Chu LP, Novina CD, Lindsley RC, Carr SA, Ebert BL,  (2016) &quot;Rps14 haploinsufficiency causes a block in erythroid differentiation mediated by S100A8 and S100A9.&quot; <i>Nat Med</i> <b>22</b>(3):288&ndash;97; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26878232 26878232]; doi: [https://dx.doi.org/10.1038/nm.4047 10.1038/nm.4047]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26878232 1].
 +
#Kn&ouml;ppel A, N&auml;svall J, Andersson DI,  (2016) &quot;Compensating the Fitness Costs of Synonymous Mutations.&quot; <i>Mol Biol Evol</i> <b>33</b>(6):1461&ndash;77; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26882986 26882986]; doi: [https://dx.doi.org/10.1093/molbev/msw028 10.1093/molbev/msw028]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26882986 72].
 +
#Creedon H, G&oacute;mez-Cuadrado L, Tarnauskait&#x117; &#x17D;, Balla J, Canel M, MacLeod KG, Serrels B, Fraser C, Unciti-Broceta A, Tracey N, Le Bihan T, Klinowska T, Sims AH, Byron A, Brunton VG,  (2016) &quot;Identification of novel pathways linking epithelial-to-mesenchymal transition with resistance to HER2-targeted therapy.&quot; <i>Oncotarget</i> <b>7</b>(10):11539&ndash;52; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26883193 26883193]; doi: [https://dx.doi.org/10.18632/oncotarget.7317 10.18632/oncotarget.7317]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26883193 6].
 +
#Zufferey A, Ibberson M, Reny JL, Nolli S, Schvartz D, Docquier M, Xenarios I, Sanchez JC, Fontana P,  (2016) &quot;New molecular insights into modulation of platelet reactivity in aspirin-treated patients using a network-based approach.&quot; <i>Hum Genet</i> <b>135</b>(4):403&ndash;14; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26883867 26883867]; doi: [https://dx.doi.org/10.1007/s00439-016-1642-1 10.1007/s00439-016-1642-1]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26883867 13].
 +
#Huebner AR, Cheng L, Somparn P, Knepper MA, Fenton RA, Pisitkun T,  (2016) &quot;Deubiquitylation of Protein Cargo Is Not an Essential Step in Exosome Formation.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(5):1556&ndash;71; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26884507 26884507]; doi: [https://dx.doi.org/10.1074/mcp.M115.054965 10.1074/mcp.M115.054965]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26884507 64].
 +
#Ramallo Guevara C, Philipp O, Hamann A, Werner A, Osiewacz HD, Rexroth S, R&ouml;gner M, Poetsch A,  (2016) &quot;Global Protein Oxidation Profiling Suggests Efficient Mitochondrial Proteome Homeostasis During Aging.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(5):1692&ndash;709; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26884511 26884511]; doi: [https://dx.doi.org/10.1074/mcp.M115.055616 10.1074/mcp.M115.055616]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26884511 17].
 +
#Lee HL, Chiang IC, Liang SY, Lee DY, Chang GD, Wang KY, Lin SY, Shih YL,  (2016) &quot;Quantitative Proteomics Analysis Reveals the Min System of Escherichia coli Modulates Reversible Protein Association with the Inner Membrane.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(5):1572&ndash;83; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26889046 26889046]; doi: [https://dx.doi.org/10.1074/mcp.M115.053603 10.1074/mcp.M115.053603]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26889046 4].
 +
#Hiramatsu K, Yoshino K, Serada S, Yoshihara K, Hori Y, Fujimoto M, Matsuzaki S, Egawa-Takata T, Kobayashi E, Ueda Y, Morii E, Enomoto T, Naka T, Kimura T,  (2016) &quot;Similar protein expression profiles of ovarian and endometrial high-grade serous carcinomas.&quot; <i>Br J Cancer</i> <b>114</b>(5):554&ndash;61; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26889980 26889980]; doi: [https://dx.doi.org/10.1038/bjc.2016.27 10.1038/bjc.2016.27]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26889980 6].
 +
#Adav SS, Gallart-Palau X, Tan KH, Lim SK, Tam JP, Sze SK,  (2016) &quot;Dementia-linked amyloidosis is associated with brain protein deamidation as revealed by proteomic profiling of human brain tissues.&quot; <i>Mol Brain</i> <b>9</b>:20; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26892330 26892330]; doi: [https://dx.doi.org/10.1186/s13041-016-0200-z 10.1186/s13041-016-0200-z]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26892330 4].
 +
#Sieber J, Hauer C, Bhuvanagiri M, Leicht S, Krijgsveld J, Neu-Yilik G, Hentze MW, Kulozik AE,  (2016) &quot;Proteomic Analysis Reveals Branch-specific Regulation of the Unfolded Protein Response by Nonsense-mediated mRNA Decay.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(5):1584&ndash;97; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26896796 26896796]; doi: [https://dx.doi.org/10.1074/mcp.M115.054056 10.1074/mcp.M115.054056]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26896796 4].
 +
#Zilkenat S, Franz-Wachtel M, Stierhof YD, Gal&aacute;n JE, Macek B, Wagner S,  (2016) &quot;Determination of the Stoichiometry of the Complete Bacterial Type III Secretion Needle Complex Using a Combined Quantitative Proteomic Approach.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(5):1598&ndash;609; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26900162 26900162]; doi: [https://dx.doi.org/10.1074/mcp.M115.056598 10.1074/mcp.M115.056598]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26900162 18].
 +
#Zhao L, Chen Y, Bajaj AO, Eblimit A, Xu M, Soens ZT, Wang F, Ge Z, Jung SY, He F, Li Y, Wensel TG, Qin J, Chen R,  (2016) &quot;Integrative subcellular proteomic analysis allows accurate prediction of human disease-causing genes.&quot; <i>Genome Res</i> <b>26</b>(5):660&ndash;9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26912414 26912414]; doi: [https://dx.doi.org/10.1101/gr.198911.115 10.1101/gr.198911.115]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26912414 26].
 +
#Abelin JG, Patel J, Lu X, Feeney CM, Fagbami L, Creech AL, Hu R, Lam D, Davison D, Pino L, Qiao JW, Kuhn E, Officer A, Li J, Abbatiello S, Subramanian A, Sidman R, Snyder E, Carr SA, Jaffe JD,  (2016) &quot;Reduced-representation Phosphosignatures Measured by Quantitative Targeted MS Capture Cellular States and Enable Large-scale Comparison of Drug-induced Phenotypes.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(5):1622&ndash;41; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26912667 26912667]; doi: [https://dx.doi.org/10.1074/mcp.M116.058354 10.1074/mcp.M116.058354]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26912667 4].
 +
#Chen JX, Cipriani PG, Mecenas D, Polanowska J, Piano F, Gunsalus KC, Selbach M,  (2016) &quot;In Vivo Interaction Proteomics in Caenorhabditis elegans Embryos Provides New Insights into P Granule Dynamics.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(5):1642&ndash;57; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26912668 26912668]; doi: [https://dx.doi.org/10.1074/mcp.M115.053975 10.1074/mcp.M115.053975]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26912668 66].
 +
#Mostafa I, Zhu N, Yoo MJ, Balmant KM, Misra BB, Dufresne C, Abou-Hashem M, Chen S, El-Domiaty M,  (2016) &quot;New nodes and edges in the glucosinolate molecular network revealed by proteomics and metabolomics of Arabidopsis myb28/29 and cyp79B2/B3 glucosinolate mutants.&quot; <i>J Proteomics</i> <b>138</b>:1&ndash;19; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26915584 26915584]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.02.012 10.1016/j.jprot.2016.02.012]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26915584 24].
 +
#Xu B, Gao Y, Zhan S, Xiong F, Qiu W, Qian X, Wang T, Wang N, Zhang D, Yang Q, Wang R, Bao X, Dou W, Tian R, Meng S, Gai WP, Huang Y, Yan XX, Ge W, Ma C,  (2016) &quot;Quantitative protein profiling of hippocampus during human aging.&quot; <i>Neurobiol Aging</i> <b>39</b>:46&ndash;56; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26923401 26923401]; doi: [https://dx.doi.org/10.1016/j.neurobiolaging.2015.11.029 10.1016/j.neurobiolaging.2015.11.029]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26923401 20].
 +
#Reddy RJ, Gajadhar AS, Swenson EJ, Rothenberg DA, Curran TG, White FM,  (2016) &quot;Early signaling dynamics of the epidermal growth factor receptor.&quot; <i>Proc Natl Acad Sci U S A</i> <b>113</b>(11):3114&ndash;9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26929352 26929352]; doi: [https://dx.doi.org/10.1073/pnas.1521288113 10.1073/pnas.1521288113]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26929352 30].
 +
#Bigenzahn JW, Fauster A, Rebsamen M, Kandasamy RK, Scorzoni S, Vladimer GI, M&uuml;ller AC, Gstaiger M, Zuber J, Bennett KL, Superti-Furga G,  (2016) &quot;An Inducible Retroviral Expression System for Tandem Affinity Purification Mass-Spectrometry-Based Proteomics Identifies Mixed Lineage Kinase Domain-like Protein (MLKL) as an Heat Shock Protein 90 (HSP90) Client.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(3):1139&ndash;50; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26933192 26933192]; doi: [https://dx.doi.org/10.1074/mcp.O115.055350  10.1074/mcp.O115.055350 ]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26933192 16].
 +
#de Torre-Minguela C, Barber&agrave;-Cremades M, G&oacute;mez AI, Mart&iacute;n-S&aacute;nchez F, Pelegr&iacute;n P,  (2016) &quot;Macrophage activation and polarization modify P2X7 receptor secretome influencing the inflammatory process.&quot; <i>Sci Rep</i> <b>6</b>:22586; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26935289 26935289]; doi: [https://dx.doi.org/10.1038/srep22586 10.1038/srep22586]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26935289 118].
 +
#Ly A, Merl-Pham J, Priller M, Gruhn F, Senninger N, Ueffing M, Hauck SM,  (2016) &quot;Proteomic Profiling Suggests Central Role Of STAT Signaling during Retinal Degeneration in the rd10 Mouse Model.&quot; <i>J Proteome Res</i> <b>15</b>(4):1350&ndash;9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26939627 26939627]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00111 10.1021/acs.jproteome.6b00111]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26939627 24].
 +
#Salih M, Demmers JA, Bezstarosti K, Leonhard WN, Losekoot M, van Kooten C, Gansevoort RT, Peters DJ, Zietse R, Hoorn EJ, DIPAK Consortium.,  (2016) &quot;Proteomics of Urinary Vesicles Links Plakins and Complement to Polycystic Kidney Disease.&quot; <i>J Am Soc Nephrol</i> <b>27</b>(10):3079&ndash;3092; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26940098 26940098]; doi: [https://dx.doi.org/10.1681/ASN.2015090994 10.1681/ASN.2015090994]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26940098 7].
 +
#Kamkina P, Snoek LB, Grossmann J, Volkers RJ, Sterken MG, Daube M, Roschitzki B, Fortes C, Schlapbach R, Roth A, von Mering C, Hengartner MO, Schrimpf SP, Kammenga JE,  (2016) &quot;Natural Genetic Variation Differentially Affects the Proteome and Transcriptome in Caenorhabditis elegans.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(5):1670&ndash;80; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26944343 26944343]; doi: [https://dx.doi.org/10.1074/mcp.M115.052548 10.1074/mcp.M115.052548]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26944343 12].
 +
#Zhang T, Shen S, Qu J, Ghaemmaghami S,  (2016) &quot;Global Analysis of Cellular Protein Flux Quantifies the Selectivity of Basal Autophagy.&quot; <i>Cell Rep</i> <b>14</b>(10):2426&ndash;39; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26947064 26947064]; doi: [https://dx.doi.org/10.1016/j.celrep.2016.02.040 10.1016/j.celrep.2016.02.040]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26947064 13].
 +
#Xin L, Xu B, Ma L, Hou Q, Ye M, Meng S, Ding X, Ge W,  (2016) &quot;Proteomics study reveals that the dysregulation of focal adhesion and ribosome contribute to early pregnancy loss.&quot; <i>Proteomics Clin Appl</i> <b>10</b>(5):554&ndash;63; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26947931 26947931]; doi: [https://dx.doi.org/10.1002/prca.201500136 10.1002/prca.201500136]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26947931 1].
 +
#Adewole OO, Erhabor GE, Adewole TO, Ojo AO, Oshokoya H, Wolfe LM, Prenni JE,  (2016) &quot;Proteomic profiling of eccrine sweat reveals its potential as a diagnostic biofluid for active tuberculosis.&quot; <i>Proteomics Clin Appl</i> <b>10</b>(5):547&ndash;53; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26948146 26948146]; doi: [https://dx.doi.org/10.1002/prca.201500071 10.1002/prca.201500071]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26948146 10].
 +
#Lai ZW, Bolm L, Fuellgraf H, Biniossek ML, Makowiec F, Hopt UT, Werner M, Keck T, Bausch D, Sorio C, Scarpa A, Schilling O, Bronsert P, Wellner UF,  (2016) &quot;Characterization of various cell lines from different ampullary cancer subtypes and cancer associated fibroblast-mediated responses.&quot; <i>BMC Cancer</i> <b>16</b>:195; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26951071 26951071]; doi: [https://dx.doi.org/10.1186/s12885-016-2193-5 10.1186/s12885-016-2193-5]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26951071 5].
 +
#De Marchi T, Kuhn E, Dekker LJ, Stingl C, Braakman RB, Opdam M, Linn SC, Sweep FC, Span PN, Luider TM, Foekens JA, Martens JW, Carr SA, Umar A,  (2016) &quot;Targeted MS Assay Predicting Tamoxifen Resistance in Estrogen-Receptor-Positive Breast Cancer Tissues and Sera.&quot; <i>J Proteome Res</i> <b>15</b>(4):1230&ndash;42; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26958999 26958999]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b01119 10.1021/acs.jproteome.5b01119]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26958999 78].
 +
#Jo DH, Bae J, Chae S, Kim JH, Han JH, Hwang D, Lee SW, Kim JH,  (2016) &quot;Quantitative Proteomics Reveals &beta;2 Integrin-mediated Cytoskeletal Rearrangement in Vascular Endothelial Growth Factor (VEGF)-induced Retinal Vascular Hyperpermeability.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(5):1681&ndash;91; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26969716 26969716]; doi: [https://dx.doi.org/10.1074/mcp.M115.053249 10.1074/mcp.M115.053249]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26969716 72].
 +
#Lau E, Cao Q, Ng DC, Bleakley BJ, Dincer TU, Bot BM, Wang D, Liem DA, Lam MP, Ge J, Ping P,  (2016) &quot;A large dataset of protein dynamics in the mammalian heart proteome.&quot; <i>Sci Data</i> <b>3</b>:160015; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26977904 26977904]; doi: [https://dx.doi.org/10.1038/sdata.2016.15 10.1038/sdata.2016.15]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26977904 257].
 +
#Gallart-Palau X, Lee BS, Adav SS, Qian J, Serra A, Park JE, Lai MK, Chen CP, Kalaria RN, Sze SK,  (2016) &quot;Gender differences in white matter pathology and mitochondrial dysfunction in Alzheimer&#39;s disease with cerebrovascular disease.&quot; <i>Mol Brain</i> <b>9</b>:27; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26983404 26983404]; doi: [https://dx.doi.org/10.1186/s13041-016-0205-7 10.1186/s13041-016-0205-7]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26983404 10].
 +
#Bonn F, Pan&eacute;-Farr&eacute; J, Schl&uuml;ter R, Schaffer M, Fuchs S, Bernhardt J, Riedel K, Otto A, V&ouml;lker U, van Dijl JM, Hecker M, M&auml;der U, Becher D,  (2016) &quot;Global analysis of the impact of linezolid onto virulence factor production in S. aureus USA300.&quot; <i>Int J Med Microbiol</i> <b>306</b>(3):131&ndash;40; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26996810 26996810]; doi: [https://dx.doi.org/10.1016/j.ijmm.2016.02.004 10.1016/j.ijmm.2016.02.004]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26996810 300].
 +
#He JJ, Ma J, Elsheikha HM, Song HQ, Zhou DH, Zhu XQ,  (2016) &quot;Proteomic Profiling of Mouse Liver following Acute Toxoplasma gondii Infection.&quot; <i>PLoS One</i> <b>11</b>(3):e0152022; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27003162 27003162]; doi: [https://dx.doi.org/10.1371/journal.pone.0152022 10.1371/journal.pone.0152022]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27003162 1].
 +
#Li&ntilde;eiro E, Chiva C, Cantoral JM, Sabido E, Fern&aacute;ndez-Acero FJ,  (2016) &quot;Phosphoproteome analysis of B. cinerea in response to different plant-based elicitors.&quot; <i>J Proteomics</i> <b>139</b>:84&ndash;94; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27003611 27003611]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.03.019 10.1016/j.jprot.2016.03.019]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27003611 8].
 +
#Wilkerson EM, Johansson MW, Hebert AS, Westphall MS, Mathur SK, Jarjour NN, Schwantes EA, Mosher DF, Coon JJ,  (2016) &quot;The Peripheral Blood Eosinophil Proteome.&quot; <i>J Proteome Res</i> <b>15</b>(5):1524&ndash;33; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27005946 27005946]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00006 10.1021/acs.jproteome.6b00006]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27005946 45].
 +
#Wilson MC, Trakarnsanga K, Heesom KJ, Cogan N, Green C, Toye AM, Parsons SF, Anstee DJ, Frayne J,  (2016) &quot;Comparison of the Proteome of Adult and Cord Erythroid Cells, and Changes in the Proteome Following Reticulocyte Maturation.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(6):1938&ndash;46; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27006477 27006477]; doi: [https://dx.doi.org/10.1074/mcp.M115.057315 10.1074/mcp.M115.057315]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27006477 2].
 +
#Sunitha B, Gayathri N, Kumar M, Keshava Prasad TS, Nalini A, Padmanabhan B, Srinivas Bharath MM,  (2016) &quot;Muscle biopsies from human muscle diseases with myopathic pathology reveal common alterations in mitochondrial function.&quot; <i>J Neurochem</i> <b>138</b>(1):174&ndash;91; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27015874 27015874]; doi: [https://dx.doi.org/10.1111/jnc.13626 10.1111/jnc.13626]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27015874 1].
 +
#Huang D, Piening BD, Kennedy JJ, Lin C, Jones-Weinert CW, Yan P, Paulovich AG,  (2016) &quot;DNA Replication Stress Phosphoproteome Profiles Reveal Novel Functional Phosphorylation Sites on Xrs2 in Saccharomyces cerevisiae.&quot; <i>Genetics</i> <b>203</b>(1):353&ndash;68; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27017623 27017623]; doi: [https://dx.doi.org/10.1534/genetics.115.185231 10.1534/genetics.115.185231]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27017623 4].
 +
#Lawrence RT, Searle BC, Llovet A, Vill&eacute;n J,  (2016) &quot;Plug-and-play analysis of the human phosphoproteome by targeted high-resolution mass spectrometry.&quot; <i>Nat Methods</i> <b>13</b>(5):431&ndash;4; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27018578 27018578]; doi: [https://dx.doi.org/10.1038/nmeth.3811 10.1038/nmeth.3811]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27018578 6].
 +
#Slany A, Bileck A, Kreutz D, Mayer RL, Muqaku B, Gerner C,  (2016) &quot;Contribution of Human Fibroblasts and Endothelial Cells to the Hallmarks of Inflammation as Determined by Proteome Profiling.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(6):1982&ndash;97; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27025457 27025457]; doi: [https://dx.doi.org/10.1074/mcp.M116.058099 10.1074/mcp.M116.058099]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27025457 104].
 +
#Osinalde N, S&aacute;nchez-Quiles V, Blagoev B, Kratchmarova I,  (2016) &quot;Changes in Gab2 phosphorylation and interaction partners in response to interleukin (IL)-2 stimulation in T-lymphocytes.&quot; <i>Sci Rep</i> <b>6</b>:23530; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27025927 27025927]; doi: [https://dx.doi.org/10.1038/srep23530 10.1038/srep23530]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27025927 22].
 +
#Xu G, Pattamatta A, Hildago R, Pace MC, Brown H, Borchelt DR,  (2016) &quot;Vulnerability of newly synthesized proteins to proteostasis stress.&quot; <i>J Cell Sci</i> <b>129</b>(9):1892&ndash;901; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27026526 27026526]; doi: [https://dx.doi.org/10.1242/jcs.176479 10.1242/jcs.176479]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27026526 55].
 +
#Lo Sasso G, Titz B, Nury C, Bou&eacute; S, Phillips B, Belcastro V, Schneider T, Dijon S, Baumer K, Peric D, Dulize R, Elamin A, Guedj E, Buettner A, Leroy P, Kleinhans S, Vuillaume G, Veljkovic E, Ivanov NV, Martin F, Vanscheeuwijck P, Peitsch MC, Hoeng J,  (2016) &quot;Effects of cigarette smoke, cessation and switching to a candidate modified risk tobacco product on the liver in Apoe -/- mice--a systems toxicology analysis.&quot; <i>Inhal Toxicol</i> <b>28</b>(5):226&ndash;40; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27027324 27027324]; doi: [https://dx.doi.org/10.3109/08958378.2016.1150368 10.3109/08958378.2016.1150368]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27027324 80].
 +
#Chen Z, Tran M, Tang M, Wang W, Gong Z, Chen J,  (2016) &quot;Proteomic Analysis Reveals a Novel Mutator S (MutS) Partner Involved in Mismatch Repair Pathway.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(4):1299&ndash;308; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27037360 27037360]; doi: [https://dx.doi.org/10.1074/mcp.M115.056093  10.1074/mcp.M115.056093 ]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27037360 22].
 +
#Goldman-Pinkovich A, Balno C, Strasser R, Zeituni-Molad M, Bendelak K, Rentsch D, Ephros M, Wiese M, Jardim A, Myler PJ, Zilberstein D,  (2016) &quot;An Arginine Deprivation Response Pathway Is Induced in Leishmania during Macrophage Invasion.&quot; <i>PLoS Pathog</i> <b>12</b>(4):e1005494; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27043018 27043018]; doi: [https://dx.doi.org/10.1371/journal.ppat.1005494 10.1371/journal.ppat.1005494]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27043018 8].
 +
#Salvetti A, Cout&eacute; Y, Epstein A, Arata L, Kraut A, Navratil V, Bouvet P, Greco A,  (2016) &quot;Nuclear Functions of Nucleolin through Global Proteomics and Interactomic Approaches.&quot; <i>J Proteome Res</i> <b>15</b>(5):1659&ndash;69; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27049334 27049334]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00126 10.1021/acs.jproteome.6b00126]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27049334 7].
 +
#Zhou S, Okekeogbu I, Sangireddy S, Ye Z, Li H, Bhatti S, Hui D, McDonald DW, Yang Y, Giri S, Howe KJ, Fish T, Thannhauser TW,  (2016) &quot;Proteome Modification in Tomato Plants upon Long-Term Aluminum Treatment.&quot; <i>J Proteome Res</i> <b>15</b>(5):1670&ndash;84; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27052409 27052409]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00128 10.1021/acs.jproteome.6b00128]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27052409 68].
 +
#Slomnicki LP, Malinowska A, Kistowski M, Palusinski A, Zheng JJ, Sepp M, Timmusk T, Dadlez M, Hetman M,  (2016) &quot;Nucleolar Enrichment of Brain Proteins with Critical Roles in Human Neurodevelopment.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(6):2055&ndash;75; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27053602 27053602]; doi: [https://dx.doi.org/10.1074/mcp.M115.051920 10.1074/mcp.M115.051920]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27053602 18].
 +
#Packialakshmi B, Liyanage R, Lay JO Jr, Makkar SK, Rath NC,  (2016) &quot;Proteomic Changes in Chicken Plasma Induced by Salmonella typhimurium Lipopolysaccharides.&quot; <i>Proteomics Insights</i> <b>7</b>:1&ndash;9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27053921 27053921]; doi: [https://dx.doi.org/10.4137/PRI.S31609 10.4137/PRI.S31609]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27053921 6].
 +
#Liberton M, Saha R, Jacobs JM, Nguyen AY, Gritsenko MA, Smith RD, Koppenaal DW, Pakrasi HB,  (2016) &quot;Global Proteomic Analysis Reveals an Exclusive Role of Thylakoid Membranes in Bioenergetics of a Model Cyanobacterium.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(6):2021&ndash;32; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27056914 27056914]; doi: [https://dx.doi.org/10.1074/mcp.M115.057240 10.1074/mcp.M115.057240]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27056914 2].
 +
#K&auml;hne T, Richter S, Kolodziej A, Smalla KH, Pielot R, Engler A, Ohl FW, Dieterich DC, Seidenbecher C, Tischmeyer W, Naumann M, Gundelfinger ED,  (2016) &quot;Proteome rearrangements after auditory learning: high-resolution profiling of synapse-enriched protein fractions from mouse brain.&quot; <i>J Neurochem</i> <b>138</b>(1):124&ndash;38; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27062398 27062398]; doi: [https://dx.doi.org/10.1111/jnc.13636 10.1111/jnc.13636]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27062398 15].
 +
#Litholdo CG Jr, Parker BL, Eamens AL, Larsen MR, Cordwell SJ, Waterhouse PM,  (2016) &quot;Proteomic Identification of Putative MicroRNA394 Target Genes in Arabidopsis thaliana Identifies Major Latex Protein Family Members Critical for Normal Development.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(6):2033&ndash;47; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27067051 27067051]; doi: [https://dx.doi.org/10.1074/mcp.M115.053124 10.1074/mcp.M115.053124]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27067051 21].
 +
#Hoernstein SN, Mueller SJ, Fiedler K, Schuelke M, Vanselow JT, Schuessele C, Lang D, Nitschke R, Igloi GL, Schlosser A, Reski R,  (2016) &quot;Identification of Targets and Interaction Partners of Arginyl-tRNA Protein Transferase in the Moss Physcomitrella patens.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(6):1808&ndash;22; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27067052 27067052]; doi: [https://dx.doi.org/10.1074/mcp.M115.057190 10.1074/mcp.M115.057190]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27067052 134].
 +
#Drabovich AP, Pavlou MP, Schiza C, Diamandis EP,  (2016) &quot;Dynamics of Protein Expression Reveals Primary Targets and Secondary Messengers of Estrogen Receptor Alpha Signaling in MCF-7 Breast Cancer Cells.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(6):2093&ndash;107; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27067054 27067054]; doi: [https://dx.doi.org/10.1074/mcp.M115.057257 10.1074/mcp.M115.057257]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27067054 12].
 +
#Osinalde N, Mitxelena J, S&aacute;nchez-Quiles V, Akimov V, Aloria K, Arizmendi JM, Zubiaga AM, Blagoev B, Kratchmarova I,  (2016) &quot;Nuclear Phosphoproteomic Screen Uncovers ACLY as Mediator of IL-2-induced Proliferation of CD4+ T lymphocytes.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(6):2076&ndash;92; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27067055 27067055]; doi: [https://dx.doi.org/10.1074/mcp.M115.057158 10.1074/mcp.M115.057158]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27067055 19].
 +
#Xu B, Tian R, Wang X, Zhan S, Wang R, Guo Y, Ge W,  (2016) &quot;Protein profile changes in the frontotemporal lobes in human severe traumatic brain injury.&quot; <i>Brain Res</i> <b>1642</b>:344&ndash;52; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27067185 27067185]; doi: [https://dx.doi.org/10.1016/j.brainres.2016.04.008 10.1016/j.brainres.2016.04.008]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27067185 20].
 +
#Rider MA, Hurwitz SN, Meckes DG Jr,  (2016) &quot;ExtraPEG: A Polyethylene Glycol-Based Method for Enrichment of Extracellular Vesicles.&quot; <i>Sci Rep</i> <b>6</b>:23978; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27068479 27068479]; doi: [https://dx.doi.org/10.1038/srep23978 10.1038/srep23978]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27068479 3].
 +
#Barallobre-Barreiro J, Oklu R, Lynch M, Fava M, Baig F, Yin X, Barwari T, Potier DN, Albadawi H, Jahangiri M, Porter KE, Watkins MT, Misra S, Stoughton J, Mayr M,  (2016) &quot;Extracellular matrix remodelling in response to venous hypertension: proteomics of human varicose veins.&quot; <i>Cardiovasc Res</i> <b>110</b>(3):419&ndash;30; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27068509 27068509]; doi: [https://dx.doi.org/10.1093/cvr/cvw075 10.1093/cvr/cvw075]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27068509 12].
 +
#Sarhan AR, Patel TR, Creese AJ, Tomlinson MG, Hellberg C, Heath JK, Hotchin NA, Cunningham DL,  (2016) &quot;Regulation of Platelet Derived Growth Factor Signaling by Leukocyte Common Antigen-related (LAR) Protein Tyrosine Phosphatase: A Quantitative Phosphoproteomics Study.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(6):1823&ndash;36; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27074791 27074791]; doi: [https://dx.doi.org/10.1074/mcp.M115.053652 10.1074/mcp.M115.053652]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27074791 17].
 +
#Lochmatter C, Fischer R, Charles PD, Yu Z, Powrie F, Kessler BM,  (2016) &quot;Integrative Phosphoproteomics Links IL-23R Signaling with Metabolic Adaptation in Lymphocytes.&quot; <i>Sci Rep</i> <b>6</b>:24491; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27080861 27080861]; doi: [https://dx.doi.org/10.1038/srep24491 10.1038/srep24491]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27080861 7].
 +
#Arts IS, Vertommen D, Baldin F, Laloux G, Collet JF,  (2016) &quot;Comprehensively Characterizing the Thioredoxin Interactome In Vivo Highlights the Central Role Played by This Ubiquitous Oxidoreductase in Redox Control.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(6):2125&ndash;40; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27081212 27081212]; doi: [https://dx.doi.org/10.1074/mcp.M115.056440 10.1074/mcp.M115.056440]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27081212 103].
 +
#Tape CJ, Ling S, Dimitriadi M, McMahon KM, Worboys JD, Leong HS, Norrie IC, Miller CJ, Poulogiannis G, Lauffenburger DA, J&oslash;rgensen C,  (2016) &quot;Oncogenic KRAS Regulates Tumor Cell Signaling via Stromal Reciprocation.&quot; <i>Cell</i> <b>165</b>(4):910&ndash;20; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27087446 27087446]; doi: [https://dx.doi.org/10.1016/j.cell.2016.03.029 10.1016/j.cell.2016.03.029]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27087446 374].
 +
#Stoehr A, Yang Y, Patel S, Evangelista AM, Aponte A, Wang G, Liu P, Boylston J, Kloner PH, Lin Y, Gucek M, Zhu J, Murphy E,  (2016) &quot;Prolyl hydroxylation regulates protein degradation, synthesis, and splicing in human induced pluripotent stem cell-derived cardiomyocytes.&quot; <i>Cardiovasc Res</i> <b>110</b>(3):346&ndash;58; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27095734 27095734]; doi: [https://dx.doi.org/10.1093/cvr/cvw081 10.1093/cvr/cvw081]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27095734 12].
 +
#Grassl N, Kulak NA, Pichler G, Geyer PE, Jung J, Schubert S, Sinitcyn P, Cox J, Mann M,  (2016) &quot;Ultra-deep and quantitative saliva proteome reveals dynamics of the oral microbiome.&quot; <i>Genome Med</i> <b>8</b>(1):44; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27102203 27102203]; doi: [https://dx.doi.org/10.1186/s13073-016-0293-0 10.1186/s13073-016-0293-0]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27102203 89].
 +
#Aaseb&oslash; E, Mjaavatten O, Vaudel M, Farag Y, Selheim F, Berven F, Bruserud &Oslash;, Hernandez-Valladares M,  (2016) &quot;Freezing effects on the acute myeloid leukemia cell proteome and phosphoproteome revealed using optimal quantitative workflows.&quot; <i>J Proteomics</i> <b>145</b>:214&ndash;25; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27107777 27107777]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.03.049 10.1016/j.jprot.2016.03.049]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27107777 163].
 +
#Larance M, Kirkwood KJ, Tinti M, Brenes Murillo A, Ferguson MA, Lamond AI,  (2016) &quot;Global Membrane Protein Interactome Analysis using In vivo Crosslinking and Mass Spectrometry-based Protein Correlation Profiling.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(7):2476&ndash;90; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27114452 27114452]; doi: [https://dx.doi.org/10.1074/mcp.O115.055467 10.1074/mcp.O115.055467]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27114452 396].
 +
#Laghmani K, Beck BB, Yang SS, Seaayfan E, Wenzel A, Reusch B, Vitzthum H, Priem D, Demaretz S, Bergmann K, Duin LK, G&ouml;bel H, Mache C, Thiele H, Bartram MP, Dombret C, Altm&uuml;ller J, N&uuml;rnberg P, Benzing T, Levtchenko E, Seyberth HW, Klaus G, Yigit G, Lin SH, Timmer A, de Koning TJ, Scherjon SA, Schlingmann KP, Bertrand MJ, Rinschen MM, de Backer O, Konrad M, K&ouml;mhoff M,  (2016) &quot;Polyhydramnios, Transient Antenatal Bartter&#39;s Syndrome, and MAGED2 Mutations.&quot; <i>N Engl J Med</i> <b>374</b>(19):1853&ndash;63; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27120771 27120771]; doi: [https://dx.doi.org/10.1056/NEJMoa1507629 10.1056/NEJMoa1507629]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27120771 21].
 +
#Hoehenwarter W, M&ouml;nchgesang S, Neumann S, Majovsky P, Abel S, M&uuml;ller J,  (2016) &quot;Comparative expression profiling reveals a role of the root apoplast in local phosphate response.&quot; <i>BMC Plant Biol</i> <b>16</b>:106; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27121119 27121119]; doi: [https://dx.doi.org/10.1186/s12870-016-0790-8 10.1186/s12870-016-0790-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27121119 23].
 +
#Eyckerman S, Titeca K, Van Quickelberghe E, Cloots E, Verhee A, Samyn N, De Ceuninck L, Timmerman E, De Sutter D, Lievens S, Van Calenbergh S, Gevaert K, Tavernier J,  (2016) &quot;Trapping mammalian protein complexes in viral particles.&quot; <i>Nat Commun</i> <b>7</b>:11416; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27122307 27122307]; doi: [https://dx.doi.org/10.1038/ncomms11416 10.1038/ncomms11416]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27122307 58].
 +
#Ono M, Yamada K, Bensaddek D, Afzal V, Biddlestone J, Ortmann B, Mudie S, Boivin V, Scott MS, Rocha S, Lamond AI,  (2016) &quot;Enhanced snoMEN Vectors Facilitate Establishment of GFP-HIF-1&alpha; Protein Replacement Human Cell Lines.&quot; <i>PLoS One</i> <b>11</b>(4):e0154759; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27128805 27128805]; doi: [https://dx.doi.org/10.1371/journal.pone.0154759 10.1371/journal.pone.0154759]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27128805 72].
 +
#Petrone A, Adamo ME, Cheng C, Kettenbach AN,  (2016) &quot;Identification of Candidate Cyclin-dependent kinase 1 (Cdk1) Substrates in Mitosis by Quantitative Phosphoproteomics.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(7):2448&ndash;61; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27134283 27134283]; doi: [https://dx.doi.org/10.1074/mcp.M116.059394 10.1074/mcp.M116.059394]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27134283 90].
 +
#Pozniak Y, Balint-Lahat N, Rudolph JD, Lindskog C, Katzir R, Avivi C, Pont&eacute;n F, Ruppin E, Barshack I, Geiger T,  (2016) &quot;System-wide Clinical Proteomics of Breast Cancer Reveals Global Remodeling of Tissue Homeostasis.&quot; <i>Cell Syst</i> <b>2</b>(3):172&ndash;84; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27135363 27135363]; doi: [https://dx.doi.org/10.1016/j.cels.2016.02.001 10.1016/j.cels.2016.02.001]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27135363 126].
 +
#Ori A, Toyama BH, Harris MS, Bock T, Iskar M, Bork P, Ingolia NT, Hetzer MW, Beck M,  (2015) &quot;Integrated Transcriptome and Proteome Analyses Reveal Organ-Specific Proteome Deterioration in Old Rats.&quot; <i>Cell Syst</i> <b>1</b>(3):224&ndash;37; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27135913 27135913]; doi: [https://dx.doi.org/10.1016/j.cels.2015.08.012 10.1016/j.cels.2015.08.012]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27135913 190].
 +
#Francavilla C, Papetti M, Rigbolt KT, Pedersen AK, Sigurdsson JO, Cazzamali G, Karemore G, Blagoev B, Olsen JV,  (2016) &quot;Multilayered proteomics reveals molecular switches dictating ligand-dependent EGFR trafficking.&quot; <i>Nat Struct Mol Biol</i> <b>23</b>(6):608&ndash;18; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27136326 27136326]; doi: [https://dx.doi.org/10.1038/nsmb.3218 10.1038/nsmb.3218]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27136326 19].
 +
#Ulrich V, Rotllan N, Araldi E, Luciano A, Skroblin P, Abonnenc M, Perrotta P, Yin X, Bauer A, Leslie KL, Zhang P, Aryal B, Montgomery RL, Thum T, Martin K, Suarez Y, Mayr M, Fernandez-Hernando C, Sessa WC,  (2016) &quot;Chronic miR-29 antagonism promotes favorable plaque remodeling in atherosclerotic mice.&quot; <i>EMBO Mol Med</i> <b>8</b>(6):643&ndash;53; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27137489 27137489]; doi: [https://dx.doi.org/10.15252/emmm.201506031 10.15252/emmm.201506031]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27137489 120].
 +
#Zielke RA, Wierzbicki IH, Baarda BI, Gafken PR, Soge OO, Holmes KK, Jerse AE, Unemo M, Sikora AE,  (2016) &quot;Proteomics-driven Antigen Discovery for Development of Vaccines Against Gonorrhea.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(7):2338&ndash;55; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27141096 27141096]; doi: [https://dx.doi.org/10.1074/mcp.M116.058800 10.1074/mcp.M116.058800]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27141096 3].
 +
#Masuishi Y, Kimura Y, Arakawa N, Hirano H,  (2016) &quot;Data for identification of GPI-anchored peptides and &omega;-sites in cancer cell lines.&quot; <i>Data Brief</i> <b>7</b>:1302&ndash;5; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27141528 27141528]; doi: [https://dx.doi.org/10.1016/j.dib.2016.04.001 10.1016/j.dib.2016.04.001]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27141528 42].
 +
#Ziganshin RH, Ivanova OM, Lomakin YA, Belogurov AA Jr, Kovalchuk SI, Azarkin IV, Arapidi GP, Anikanov NA, Shender VO, Piradov MA, Suponeva NA, Vorobyeva AA, Gabibov AG, Ivanov VT, Govorun VM,  (2016) &quot;The Pathogenesis of the Demyelinating Form of Guillain-Barre Syndrome (GBS): Proteo-peptidomic and Immunological Profiling of Physiological Fluids.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(7):2366&ndash;78; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27143409 27143409]; doi: [https://dx.doi.org/10.1074/mcp.M115.056036 10.1074/mcp.M115.056036]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27143409 28].
 +
#Kempf SJ, Metaxas A, Ib&aacute;&ntilde;ez-Vea M, Darvesh S, Finsen B, Larsen MR,  (2016) &quot;An integrated proteomics approach shows synaptic plasticity changes in an APP/PS1 Alzheimer&#39;s mouse model.&quot; <i>Oncotarget</i> <b>7</b>(23):33627&ndash;48; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27144524 27144524]; doi: [https://dx.doi.org/10.18632/oncotarget.9092 10.18632/oncotarget.9092]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27144524 104].
 +
#D&oslash;rum S, Steinsb&oslash; &Oslash;, Bergseng E, Arntzen M&Oslash;, de Souza GA, Sollid LM,  (2016) &quot;Gluten-specific antibodies of celiac disease gut plasma cells recognize long proteolytic fragments that typically harbor T-cell epitopes.&quot; <i>Sci Rep</i> <b>6</b>:25565; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27146306 27146306]; doi: [https://dx.doi.org/10.1038/srep25565 10.1038/srep25565]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27146306 27].
 +
#Chen R, Zou H, Figeys D,  (2016) &quot;Detergent-Assisted Glycoprotein Capture: A Versatile Tool for In-Depth N-Glycoproteome Analysis.&quot; <i>J Proteome Res</i> <b>15</b>(6):2080&ndash;6; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27147131 27147131]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00056 10.1021/acs.jproteome.6b00056]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27147131 36].
 +
#Packialakshmi B, Liyanage R, Lay JO Jr, Okimoto R, Rath NC,  (2016) &quot;Proteomic Changes in the Plasma of Broiler Chickens with Femoral Head Necrosis.&quot; <i>Biomark Insights</i> <b>11</b>:55&ndash;62; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27147818 27147818]; doi: [https://dx.doi.org/10.4137/BMI.S38291 10.4137/BMI.S38291]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27147818 6].
 +
#Jhingan GD, Kumari S, Jamwal SV, Kalam H, Arora D, Jain N, Kumaar LK, Samal A, Rao KV, Kumar D, Nandicoori VK,  (2016) &quot;Comparative Proteomic Analyses of Avirulent, Virulent, and Clinical Strains of Mycobacterium tuberculosis Identify Strain-specific Patterns.&quot; <i>J Biol Chem</i> <b>291</b>(27):14257&ndash;73; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27151218 27151218]; doi: [https://dx.doi.org/10.1074/jbc.M115.666123 10.1074/jbc.M115.666123]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27151218 16].
 +
#Toriyama M, Lee C, Taylor SP, Duran I, Cohn DH, Bruel AL, Tabler JM, Drew K, Kelly MR, Kim S, Park TJ, Braun DA, Pierquin G, Biver A, Wagner K, Malfroot A, Panigrahi I, Franco B, Al-Lami HA, Yeung Y, Choi YJ, University of Washington Center for Mendelian Genomics., Duffourd Y, Faivre L, Rivi&egrave;re JB, Chen J, Liu KJ, Marcotte EM, Hildebrandt F, Thauvin-Robinet C, Krakow D, Jackson PK, Wallingford JB,  (2016) &quot;The ciliopathy-associated CPLANE proteins direct basal body recruitment of intraflagellar transport machinery.&quot; <i>Nat Genet</i> <b>48</b>(6):648&ndash;56; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27158779 27158779]; doi: [https://dx.doi.org/10.1038/ng.3558 10.1038/ng.3558]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27158779 44].
 +
#Hsu CH, Hsu CW, Hsueh C, Wang CL, Wu YC, Wu CC, Liu CC, Yu JS, Chang YS, Yu CJ,  (2016) &quot;Identification and Characterization of Potential Biomarkers by Quantitative Tissue Proteomics of Primary Lung Adenocarcinoma.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(7):2396&ndash;410; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27161446 27161446]; doi: [https://dx.doi.org/10.1074/mcp.M115.057026 10.1074/mcp.M115.057026]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27161446 60].
 +
#Sigdel TK, Gao Y, He J, Wang A, Nicora CD, Fillmore TL, Shi T, Webb-Robertson BJ, Smith RD, Qian WJ, Salvatierra O, Camp DG 2nd, Sarwal MM,  (2016) &quot;Mining the human urine proteome for monitoring renal transplant injury.&quot; <i>Kidney Int</i> <b>89</b>(6):1244&ndash;52; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27165815 27165815]; doi: [https://dx.doi.org/10.1016/j.kint.2015.12.049 10.1016/j.kint.2015.12.049]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27165815 227].
 +
#Taha MK, Claus H, Lappann M, Veyrier FJ, Otto A, Becher D, Deghmane AE, Frosch M, Hellenbrand W, Hong E, Parent du Ch&acirc;telet I, Prior K, Harmsen D, Vogel U,  (2016) &quot;Evolutionary Events Associated with an Outbreak of Meningococcal Disease in Men Who Have Sex with Men.&quot; <i>PLoS One</i> <b>11</b>(5):e0154047; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27167067 27167067]; doi: [https://dx.doi.org/10.1371/journal.pone.0154047 10.1371/journal.pone.0154047]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27167067 12].
 +
#Tuveng TR, Arntzen M&Oslash;, Bengtsson O, Gardner JG, Vaaje-Kolstad G, Eijsink VG,  (2016) &quot;Proteomic investigation of the secretome of Cellvibrio japonicus during growth on chitin.&quot; <i>Proteomics</i> <b>16</b>(13):1904&ndash;14; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27169553 27169553]; doi: [https://dx.doi.org/10.1002/pmic.201500419 10.1002/pmic.201500419]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27169553 18].
 +
#Rao SR, Flores-Rodriguez N, Page SL, Wong C, Robinson PJ, Chircop M,  (2016) &quot;The Clathrin-dependent Spindle Proteome.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(8):2537&ndash;53; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27174698 27174698]; doi: [https://dx.doi.org/10.1074/mcp.M115.054809 10.1074/mcp.M115.054809]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27174698 130].
 +
#Gupta I, Villanyi Z, Kassem S, Hughes C, Panasenko OO, Steinmetz LM, Collart MA,  (2016) &quot;Translational Capacity of a Cell Is Determined during Transcription Elongation via the Ccr4-Not Complex.&quot; <i>Cell Rep</i> <b>15</b>(8):1782&ndash;94; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27184853 27184853]; doi: [https://dx.doi.org/10.1016/j.celrep.2016.04.055 10.1016/j.celrep.2016.04.055]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27184853 4].
 +
#Zvezdova E, Mikolajczak J, Garreau A, Marcellin M, Rigal L, Lee J, Choi S, Blaize G, Argenty J, Familiades J, Li L, Gonzalez de Peredo A, Burlet-Schiltz O, Love PE, Lesourne R,  (2016) &quot;Themis1 enhances T cell receptor signaling during thymocyte development by promoting Vav1 activity and Grb2 stability.&quot; <i>Sci Signal</i> <b>9</b>(428):ra51; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27188442 27188442]; doi: [https://dx.doi.org/10.1126/scisignal.aad1576 10.1126/scisignal.aad1576]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27188442 54].
 +
#Kliuchnikova AA, Samokhina NI, Ilina IY, Karpov DS, Pyatnitskiy MA, Kuznetsova KG, Toropygin IY, Kochergin SA, Alekseev IB, Zgoda VG, Archakov AI, Moshkovskii SA,  (2016) &quot;Human aqueous humor proteome in cataract, glaucoma, and pseudoexfoliation syndrome.&quot; <i>Proteomics</i> <b>16</b>(13):1938&ndash;46; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27193151 27193151]; doi: [https://dx.doi.org/10.1002/pmic.201500423 10.1002/pmic.201500423]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27193151 86].
 +
#Heaven MR, Flint D, Randall SM, Sosunov AA, Wilson L, Barnes S, Goldman JE, Muddiman DC, Brenner M,  (2016) &quot;Composition of Rosenthal Fibers, the Protein Aggregate Hallmark of Alexander Disease.&quot; <i>J Proteome Res</i> <b>15</b>(7):2265&ndash;82; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27193225 27193225]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00316 10.1021/acs.jproteome.6b00316]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27193225 8].
 +
#Yang W, Jackson B, Zhang H,  (2016) &quot;Identification of glycoproteins associated with HIV latently infected cells using quantitative glycoproteomics.&quot; <i>Proteomics</i> <b>16</b>(13):1872&ndash;80; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27195445 27195445]; doi: [https://dx.doi.org/10.1002/pmic.201500215 10.1002/pmic.201500215]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27195445 12].
 +
#Liang W, Ward LJ, Karlsson H, Ljunggren SA, Li W, Lindahl M, Yuan XM,  (2016) &quot;Distinctive proteomic profiles among different regions of human carotid plaques in men and women.&quot; <i>Sci Rep</i> <b>6</b>:26231; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27198765 27198765]; doi: [https://dx.doi.org/10.1038/srep26231 10.1038/srep26231]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27198765 60].
 +
#Arshid S, Tahir M, Fontes B, Montero EF, Castro MS, Sidoli S, Schw&auml;mmle V, Roepstorff P, Fontes W,  (2017) &quot;Neutrophil proteomic analysis reveals the participation of antioxidant enzymes, motility and ribosomal proteins in the prevention of ischemic effects by preconditioning.&quot; <i>J Proteomics</i> <b>151</b>:162&ndash;173; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27208787 27208787]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.05.016 10.1016/j.jprot.2016.05.016]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27208787 5].
 +
#Virant-Klun I, Leicht S, Hughes C, Krijgsveld J,  (2016) &quot;Identification of Maturation-Specific Proteins by Single-Cell Proteomics of Human Oocytes.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(8):2616&ndash;27; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27215607 27215607]; doi: [https://dx.doi.org/10.1074/mcp.M115.056887 10.1074/mcp.M115.056887]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27215607 18].
 +
#Yu J, Storer BE, Kushekhar K, Abu Zaid M, Zhang Q, Gafken PR, Ogata Y, Martin PJ, Flowers ME, Hansen JA, Arora M, Cutler C, Jagasia M, Pidala J, Hamilton BK, Chen GL, Pusic I, Lee SJ, Paczesny S,  (2016) &quot;Biomarker Panel for Chronic Graft-Versus-Host Disease.&quot; <i>J Clin Oncol</i> <b>34</b>(22):2583&ndash;90; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27217465 27217465]; doi: [https://dx.doi.org/10.1200/JCO.2015.65.9615 10.1200/JCO.2015.65.9615]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27217465 3].
 +
#Wang B, Pfeiffer MJ, Drexler HC, Fuellen G, Boiani M,  (2016) &quot;Proteomic Analysis of Mouse Oocytes Identifies PRMT7 as a Reprogramming Factor that Replaces SOX2 in the Induction of Pluripotent Stem Cells.&quot; <i>J Proteome Res</i> <b>15</b>(8):2407&ndash;21; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27225728 27225728]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b01083 10.1021/acs.jproteome.5b01083]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27225728 14].
 +
#Lidbury ID, Murphy AR, Scanlan DJ, Bending GD, Jones AM, Moore JD, Goodall A, Hammond JP, Wellington EM,  (2016) &quot;Comparative genomic, proteomic and exoproteomic analyses of three Pseudomonas strains reveals novel insights into the phosphorus scavenging capabilities of soil bacteria.&quot; <i>Environ Microbiol</i> <b>18</b>(10):3535&ndash;3549; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27233093 27233093]; doi: [https://dx.doi.org/10.1111/1462-2920.13390 10.1111/1462-2920.13390]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27233093 162].
 +
#Lobas AA, Karpov DS, Kopylov AT, Solovyeva EM, Ivanov MV, Ilina IY, Lazarev VN, Kuznetsova KG, Ilgisonis EV, Zgoda VG, Gorshkov MV, Moshkovskii SA,  (2016) &quot;Exome-based proteogenomics of HEK-293 human cell line: Coding genomic variants identified at the level of shotgun proteome.&quot; <i>Proteomics</i> <b>16</b>(14):1980&ndash;91; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27233776 27233776]; doi: [https://dx.doi.org/10.1002/pmic.201500349 10.1002/pmic.201500349]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27233776 7].
 +
#Lodrini M, Poschmann G, Schmidt V, W&uuml;nschel J, Dreidax D, Witt O, H&ouml;fer T, Meyer HE, St&uuml;hler K, Eggert A, Deubzer HE,  (2016) &quot;Minichromosome Maintenance Complex Is a Critical Node in the miR-183 Signaling Network of MYCN-Amplified Neuroblastoma Cells.&quot; <i>J Proteome Res</i> <b>15</b>(7):2178&ndash;86; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27239679 27239679]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00134 10.1021/acs.jproteome.6b00134]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27239679 12].
 +
#Bullen JW, Tchernyshyov I, Holewinski RJ, DeVine L, Wu F, Venkatraman V, Kass DL, Cole RN, Van Eyk J, Semenza GL,  (2016) &quot;Protein kinase A-dependent phosphorylation stimulates the transcriptional activity of hypoxia-inducible factor 1.&quot; <i>Sci Signal</i> <b>9</b>(430):ra56; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27245613 27245613]; doi: [https://dx.doi.org/10.1126/scisignal.aaf0583 10.1126/scisignal.aaf0583]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27245613 14].
 +
#Patella F, Neilson LJ, Athineos D, Erami Z, Anderson KI, Blyth K, Ryan KM, Zanivan S,  (2016) &quot;In-Depth Proteomics Identifies a Role for Autophagy in Controlling Reactive Oxygen Species Mediated Endothelial Permeability.&quot; <i>J Proteome Res</i> <b>15</b>(7):2187&ndash;97; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27246970 27246970]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00166 10.1021/acs.jproteome.6b00166]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27246970 25].
 +
#Rai AN, Thornton JA, Stokes J, Sunesara I, Swiatlo E, Nanduri B,  (2016) &quot;Polyamine transporter in Streptococcus pneumoniae is essential for evading early innate immune responses in pneumococcal pneumonia.&quot; <i>Sci Rep</i> <b>6</b>:26964; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27247105 27247105]; doi: [https://dx.doi.org/10.1038/srep26964 10.1038/srep26964]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27247105 21].
 +
#Mertins P, Mani DR, Ruggles KV, Gillette MA, Clauser KR, Wang P, Wang X, Qiao JW, Cao S, Petralia F, Kawaler E, Mundt F, Krug K, Tu Z, Lei JT, Gatza ML, Wilkerson M, Perou CM, Yellapantula V, Huang KL, Lin C, McLellan MD, Yan P, Davies SR, Townsend RR, Skates SJ, Wang J, Zhang B, Kinsinger CR, Mesri M, Rodriguez H, Ding L, Paulovich AG, Feny&ouml; D, Ellis MJ, Carr SA, NCI CPTAC.,  (2016) &quot;Proteogenomics connects somatic mutations to signalling in breast cancer.&quot; <i>Nature</i> <b>534</b>(7605):55&ndash;62; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27251275 27251275]; doi: [https://dx.doi.org/10.1038/nature18003 10.1038/nature18003]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27251275 1265].
 +
#Humphrey ES, Su SP, Nagrial AM, Hochgr&auml;fe F, Pajic M, Lehrbach GM, Parton RG, Yap AS, Horvath LG, Chang DK, Biankin AV, Wu J, Daly RJ,  (2016) &quot;Resolution of Novel Pancreatic Ductal Adenocarcinoma Subtypes by Global Phosphotyrosine Profiling.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(8):2671&ndash;85; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27259358 27259358]; doi: [https://dx.doi.org/10.1074/mcp.M116.058313 10.1074/mcp.M116.058313]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27259358 112].
 +
#Hintermair C, Vo&szlig; K, Forn&eacute; I, Heidemann M, Flatley A, Kremmer E, Imhof A, Eick D,  (2016) &quot;Specific threonine-4 phosphorylation and function of RNA polymerase II CTD during M phase progression.&quot; <i>Sci Rep</i> <b>6</b>:27401; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27264542 27264542]; doi: [https://dx.doi.org/10.1038/srep27401 10.1038/srep27401]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27264542 63].
 +
#Xu L, Gao Y, Chen Y, Xiao Y, He Q, Qiu H, Ge W,  (2016) &quot;Quantitative proteomics reveals that distant recurrence-associated protein R-Ras and Transgelin predict post-surgical survival in patients with Stage III colorectal cancer.&quot; <i>Oncotarget</i> <b>7</b>(28):43868&ndash;43893; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27270312 27270312]; doi: [https://dx.doi.org/10.18632/oncotarget.9701 10.18632/oncotarget.9701]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27270312 2].
 +
#Gnad F, Doll S, Song K, Stokes MP, Moffat J, Liu B, Arnott D, Wallin J, Friedman LS, Hatzivassiliou G, Belvin M,  (2016) &quot;Phosphoproteome analysis of the MAPK pathway reveals previously undetected feedback mechanisms.&quot; <i>Proteomics</i> <b>16</b>(14):1998&ndash;2004; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27273156 27273156]; doi: [https://dx.doi.org/10.1002/pmic.201600119 10.1002/pmic.201600119]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27273156 56].
 +
#Gnad F, Wallin J, Edgar K, Doll S, Arnott D, Robillard L, Kirkpatrick DS, Stokes MP, Vijapurkar U, Hatzivassiliou G, Friedman LS, Belvin M,  (2016) &quot;Quantitative phosphoproteomic analysis of the PI3K-regulated signaling network.&quot; <i>Proteomics</i> <b>16</b>(14):1992&ndash;7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27282143 27282143]; doi: [https://dx.doi.org/10.1002/pmic.201600118 10.1002/pmic.201600118]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27282143 72].
 +
#Prendergast L, M&uuml;ller S, Liu Y, Huang H, Dingli F, Loew D, Vassias I, Patel DJ, Sullivan KF, Almouzni G,  (2016) &quot;The CENP-T/-W complex is a binding partner of the histone chaperone FACT.&quot; <i>Genes Dev</i> <b>30</b>(11):1313&ndash;26; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27284163 27284163]; doi: [https://dx.doi.org/10.1101/gad.275073.115 10.1101/gad.275073.115]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27284163 47].
 +
#Wi&#x15B;niewski JR, Mann M,  (2016) &quot;A Proteomics Approach to the Protein Normalization Problem: Selection of Unvarying Proteins for MS-Based Proteomics and Western Blotting.&quot; <i>J Proteome Res</i> <b>15</b>(7):2321&ndash;6; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27297043 27297043]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00403 10.1021/acs.jproteome.6b00403]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27297043 64].
 +
#Narasimhan PB, Bennuru S, Meng Z, Cotton RN, Elliott KR, Ganesan S, McDonald-Fleming R, Veenstra TD, Nutman TB, Tolouei Semnani R,  (2016) &quot;Microfilariae of Brugia malayi Inhibit the mTOR Pathway and Induce Autophagy in Human Dendritic Cells.&quot; <i>Infect Immun</i> <b>84</b>(9):2463&ndash;72; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27297394 27297394]; doi: [https://dx.doi.org/10.1128/IAI.00174-16 10.1128/IAI.00174-16]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27297394 233].
 +
#Rakus D, Gizak A, Wi&#x15B;niewski JR,  (2016) &quot;Proteomics Unveils Fibroblast-Cardiomyocyte Lactate Shuttle and Hexokinase Paradox in Mouse Muscles.&quot; <i>J Proteome Res</i> <b>15</b>(8):2479&ndash;90; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27302655 27302655]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b01149 10.1021/acs.jproteome.5b01149]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27302655 60].
 +
#Chick JM, Munger SC, Simecek P, Huttlin EL, Choi K, Gatti DM, Raghupathy N, Svenson KL, Churchill GA, Gygi SP,  (2016) &quot;Defining the consequences of genetic variation on a proteome-wide scale.&quot; <i>Nature</i> <b>534</b>(7608):500&ndash;5; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27309819 27309819]; doi: [https://dx.doi.org/10.1038/nature18270 10.1038/nature18270]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27309819 27].
 +
#Madeira JP, Omer H, Alpha-Bazin B, Armengaud J, Duport C,  (2016) &quot;Deciphering the interactions between the Bacillus cereus linear plasmid, pBClin15, and its host by high-throughput comparative proteomics.&quot; <i>J Proteomics</i> <b>146</b>:25&ndash;33; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27321915 27321915]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.06.022 10.1016/j.jprot.2016.06.022]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27321915 26].
 +
#Szklanna PB, Foy M, Wynne K, Byrne D, Maguire PB,  (2016) &quot;Analysis of the proteins associated with platelet detergent resistant membranes.&quot; <i>Proteomics</i> <b>16</b>(17):2345&ndash;50; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27329341 27329341]; doi: [https://dx.doi.org/10.1002/pmic.201500309 10.1002/pmic.201500309]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27329341 18].
 +
#Ahrn&eacute; E, Glatter T, Vigan&ograve; C, Schubert Cv, Nigg EA, Schmidt A,  (2016) &quot;Evaluation and Improvement of Quantification Accuracy in Isobaric Mass Tag-Based Protein Quantification Experiments.&quot; <i>J Proteome Res</i> <b>15</b>(8):2537&ndash;47; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27345528 27345528]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00066 10.1021/acs.jproteome.6b00066]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27345528 41].
 +
#Chaubey PM, Hofstetter L, Roschitzki B, Stieger B,  (2016) &quot;Proteomic Analysis of the Rat Canalicular Membrane Reveals Expression of a Complex System of P4-ATPases in Liver.&quot; <i>PLoS One</i> <b>11</b>(6):e0158033; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27347675 27347675]; doi: [https://dx.doi.org/10.1371/journal.pone.0158033 10.1371/journal.pone.0158033]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27347675 60].
 +
#Bespyatykh J, Shitikov E, Butenko I, Altukhov I, Alexeev D, Mokrousov I, Dogonadze M, Zhuravlev V, Yablonsky P, Ilina E, Govorun V,  (2016) &quot;Proteome analysis of the Mycobacterium tuberculosis Beijing B0/W148 cluster.&quot; <i>Sci Rep</i> <b>6</b>:28985; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27356881 27356881]; doi: [https://dx.doi.org/10.1038/srep28985 10.1038/srep28985]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27356881 23].
 +
#Monks J, Dzieciatkowska M, Bales ES, Orlicky DJ, Wright RM, McManaman JL,  (2016) &quot;Xanthine oxidoreductase mediates membrane docking of milk-fat droplets but is not essential for apocrine lipid secretion.&quot; <i>J Physiol</i> <b>594</b>(20):5899&ndash;5921; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27357166 27357166]; doi: [https://dx.doi.org/10.1113/JP272390 10.1113/JP272390]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27357166 16].
 +
#Rinschen MM, Schroeter CB, Koehler S, Ising C, Schermer B, Kann M, Benzing T, Brinkkoetter PT,  (2016) &quot;Quantitative deep mapping of the cultured podocyte proteome uncovers shifts in proteostatic mechanisms during differentiation.&quot; <i>Am J Physiol Cell Physiol</i> <b>311</b>(3):C404&ndash;17; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27357545 27357545]; doi: [https://dx.doi.org/10.1152/ajpcell.00121.2016 10.1152/ajpcell.00121.2016]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27357545 3].
 +
#Dudekula K, Le Bihan T,  (2016) &quot;Data from quantitative label free proteomics analysis of rat spleen.&quot; <i>Data Brief</i> <b>8</b>:494&ndash;500; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27358910 27358910]; doi: [https://dx.doi.org/10.1016/j.dib.2016.05.058 10.1016/j.dib.2016.05.058]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27358910 17].
 +
#Carrier M, Joint M, Lutzing R, Page A, Rochette-Egly C,  (2016) &quot;Phosphoproteome and Transcriptome of RA-Responsive and RA-Resistant Breast Cancer Cell Lines.&quot; <i>PLoS One</i> <b>11</b>(6):e0157290; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27362937 27362937]; doi: [https://dx.doi.org/10.1371/journal.pone.0157290 10.1371/journal.pone.0157290]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27362937 6].
 +
#Pettersen VK, Mosevoll KA, Lindemann PC, Wiker HG,  (2016) &quot;Coordination of Metabolism and Virulence Factors Expression of Extraintestinal Pathogenic Escherichia coli Purified from Blood Cultures of Patients with Sepsis.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(9):2890&ndash;907; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27364158 27364158]; doi: [https://dx.doi.org/10.1074/mcp.M116.060582 10.1074/mcp.M116.060582]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27364158 90].
 +
#Zhang H, Liu T, Zhang Z, Payne SH, Zhang B, McDermott JE, Zhou JY, Petyuk VA, Chen L, Ray D, Sun S, Yang F, Chen L, Wang J, Shah P, Cha SW, Aiyetan P, Woo S, Tian Y, Gritsenko MA, Clauss TR, Choi C, Monroe ME, Thomas S, Nie S, Wu C, Moore RJ, Yu KH, Tabb DL, Feny&ouml; D, Bafna V, Wang Y, Rodriguez H, Boja ES, Hiltke T, Rivers RC, Sokoll L, Zhu H, Shih IeM, Cope L, Pandey A, Zhang B, Snyder MP, Levine DA, Smith RD, Chan DW, Rodland KD, CPTAC Investigators.,  (2016) &quot;Integrated Proteogenomic Characterization of Human High-Grade Serous Ovarian Cancer.&quot; <i>Cell</i> <b>166</b>(3):755&ndash;65; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27372738 27372738]; doi: [https://dx.doi.org/10.1016/j.cell.2016.05.069 10.1016/j.cell.2016.05.069]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27372738 1996].
 +
#Luo Y, Jacobs EY, Greco TM, Mohammed KD, Tong T, Keegan S, Binley JM, Cristea IM, Feny&ouml; D, Rout MP, Chait BT, Muesing MA,  (2016) &quot;HIV-host interactome revealed directly from infected cells.&quot; <i>Nat Microbiol</i> <b>1</b>(7):16068; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27375898 27375898]; doi: [https://dx.doi.org/10.1038/nmicrobiol.2016.68 10.1038/nmicrobiol.2016.68]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27375898 53].
 +
#Carabetta VJ, Greco TM, Tanner AW, Cristea IM, Dubnau D,  (2016) &quot;Temporal Regulation of the <i>Bacillus subtilis</i> Acetylome and Evidence for a Role of MreB Acetylation in Cell Wall Growth.&quot; <i>mSystems</i> <b>1</b>(3):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27376153 27376153]; doi: [https://dx.doi.org/10.1128/mSystems.00005-16 10.1128/mSystems.00005-16]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27376153 30].
 +
#Sysoev VO, Fischer B, Frese CK, Gupta I, Krijgsveld J, Hentze MW, Castello A, Ephrussi A,  (2016) &quot;Global changes of the RNA-bound proteome during the maternal-to-zygotic transition in Drosophila.&quot; <i>Nat Commun</i> <b>7</b>:12128; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27378189 27378189]; doi: [https://dx.doi.org/10.1038/ncomms12128 10.1038/ncomms12128]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27378189 25].
 +
#Barasa BA, van Oirschot BA, Bianchi P, van Solinge WW, Heck AJ, van Wijk R, Slijper M,  (2016) &quot;Proteomics reveals reduced expression of transketolase in pyrimidine 5&#39;-nucleotidase deficient patients.&quot; <i>Proteomics Clin Appl</i> <b>10</b>(8):859&ndash;69; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27381654 27381654]; doi: [https://dx.doi.org/10.1002/prca.201500130 10.1002/prca.201500130]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27381654 8].
 +
#Ashford P, Hernandez A, Greco TM, Buch A, Sodeik B, Cristea IM, Gr&uuml;newald K, Shepherd A, Topf M,  (2016) &quot;HVint: A Strategy for Identifying Novel Protein-Protein Interactions in Herpes Simplex Virus Type 1.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(9):2939&ndash;53; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27384951 27384951]; doi: [https://dx.doi.org/10.1074/mcp.M116.058552 10.1074/mcp.M116.058552]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27384951 19].
 +
#Picariello G, Addeo F, Ferranti P, Nocerino R, Paparo L, Passariello A, Dallas DC, Robinson RC, Barile D, Canani RB,  (2016) &quot;Antibody-independent identification of bovine milk-derived peptides in breast-milk.&quot; <i>Food Funct</i> <b>7</b>(8):3402&ndash;9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27396729 27396729]; doi: [https://dx.doi.org/10.1039/c6fo00731g 10.1039/c6fo00731g]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27396729 12].
 +
#Hampoelz B, Mackmull MT, Machado P, Ronchi P, Bui KH, Schieber N, Santarella-Mellwig R, Necakov A, Andr&eacute;s-Pons A, Philippe JM, Lecuit T, Schwab Y, Beck M,  (2016) &quot;Pre-assembled Nuclear Pores Insert into the Nuclear Envelope during Early Development.&quot; <i>Cell</i> <b>166</b>(3):664&ndash;78; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27397507 27397507]; doi: [https://dx.doi.org/10.1016/j.cell.2016.06.015 10.1016/j.cell.2016.06.015]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27397507 18].
 +
#Konstantinell A, Bruun JA, Olsen R, Aspar A, &Scaron;kalko-Basnet N, Sveinbj&oslash;rnsson B, Moens U,  (2016) &quot;Secretomic analysis of extracellular vesicles originating from polyomavirus-negative and polyomavirus-positive Merkel cell carcinoma cell lines.&quot; <i>Proteomics</i> <b>16</b>(19):2587&ndash;2591; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27402257 27402257]; doi: [https://dx.doi.org/10.1002/pmic.201600223 10.1002/pmic.201600223]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27402257 28].
 +
#Xue L, Blythe EE, Freiberger EC, Mamrosh JL, Hebert AS, Reitsma JM, Hess S, Coon JJ, Deshaies RJ,  (2016) &quot;Valosin-containing protein (VCP)-Adaptor Interactions are Exceptionally Dynamic and Subject to Differential Modulation by a VCP Inhibitor.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(9):2970&ndash;86; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27406709 27406709]; doi: [https://dx.doi.org/10.1074/mcp.M116.061036 10.1074/mcp.M116.061036]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27406709 148].
 +
#Shraibman B, Kadosh DM, Barnea E, Admon A,  (2016) &quot;Human Leukocyte Antigen (HLA) Peptides Derived from Tumor Antigens Induced by Inhibition of DNA Methylation for Development of Drug-facilitated Immunotherapy.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(9):3058&ndash;70; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27412690 27412690]; doi: [https://dx.doi.org/10.1074/mcp.M116.060350 10.1074/mcp.M116.060350]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27412690 60].
 +
#M&uuml;ller S, Balaz M, Stefanicka P, Varga L, Amri EZ, Ukropec J, Wollscheid B, Wolfrum C,  (2016) &quot;Proteomic Analysis of Human Brown Adipose Tissue Reveals Utilization of Coupled and Uncoupled Energy Expenditure Pathways.&quot; <i>Sci Rep</i> <b>6</b>:30030; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27418403 27418403]; doi: [https://dx.doi.org/10.1038/srep30030 10.1038/srep30030]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27418403 32].
 +
#Rice RH, Durbin-Johnson BP, Ishitsuka Y, Salemi M, Phinney BS, Rocke DM, Roop DR,  (2016) &quot;Proteomic Analysis of Loricrin Knockout Mouse Epidermis.&quot; <i>J Proteome Res</i> <b>15</b>(8):2560&ndash;6; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27418529 27418529]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00108 10.1021/acs.jproteome.6b00108]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27418529 42].
 +
#Wojtowicz EE, Lechman ER, Hermans KG, Schoof EM, Wienholds E, Isserlin R, van Veelen PA, Broekhuis MJ, Janssen GM, Trotman-Grant A, Dobson SM, Krivdova G, Elzinga J, Kennedy J, Gan OI, Sinha A, Ignatchenko V, Kislinger T, Dethmers-Ausema B, Weersing E, Alemdehy MF, de Looper HW, Bader GD, Ritsema M, Erkeland SJ, Bystrykh LV, Dick JE, de Haan G,  (2016) &quot;Ectopic miR-125a Expression Induces Long-Term Repopulating Stem Cell Capacity in Mouse and Human Hematopoietic Progenitors.&quot; <i>Cell Stem Cell</i> <b>19</b>(3):383&ndash;96; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27424784 27424784]; doi: [https://dx.doi.org/10.1016/j.stem.2016.06.008 10.1016/j.stem.2016.06.008]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27424784 36].
 +
#Petrera A, Kern U, Linz D, Gomez-Auli A, Hohl M, Gassenhuber J, Sadowski T, Schilling O,  (2016) &quot;Proteomic Profiling of Cardiomyocyte-Specific Cathepsin A Overexpression Links Cathepsin A to the Oxidative Stress Response.&quot; <i>J Proteome Res</i> <b>15</b>(9):3188&ndash;95; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27432266 27432266]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00413 10.1021/acs.jproteome.6b00413]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27432266 3].
 +
#Zhou Y, Xiong L, Zhang Y, Yu R, Jiang X, Xu G,  (2016) &quot;Quantitative proteomics identifies myoferlin as a novel regulator of A Disintegrin and Metalloproteinase 12 in HeLa cells.&quot; <i>J Proteomics</i> <b>148</b>:94&ndash;104; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27432471 27432471]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.07.015 10.1016/j.jprot.2016.07.015]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27432471 14].
 +
#Li X, Tran KM, Aziz KE, Sorokin AV, Chen J, Wang W,  (2016) &quot;Defining the Protein-Protein Interaction Network of the Human Protein Tyrosine Phosphatase Family.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(9):3030&ndash;44; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27432908 27432908]; doi: [https://dx.doi.org/10.1074/mcp.M116.060277 10.1074/mcp.M116.060277]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27432908 88].
 +
#Su&aacute;rez-Cort&eacute;s P, Sharma V, Bertuccini L, Costa G, Bannerman NL, Sannella AR, Williamson K, Klemba M, Levashina EA, Lasonder E, Alano P,  (2016) &quot;Comparative Proteomics and Functional Analysis Reveal a Role of Plasmodium falciparum Osmiophilic Bodies in Malaria Parasite Transmission.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(10):3243&ndash;3255; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27432909 27432909]; doi: [https://dx.doi.org/10.1074/mcp.M116.060681 10.1074/mcp.M116.060681]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27432909 162].
 +
#Vandenbrouck Y, Lane L, Carapito C, Duek P, Rondel K, Bruley C, Macron C, Gonzalez de Peredo A, Cout&eacute; Y, Chaoui K, Com E, Gateau A, Hesse AM, Marcellin M, M&eacute;ar L, Mouton-Barbosa E, Robin T, Burlet-Schiltz O, Cianferani S, Ferro M, Fr&eacute;our T, Lindskog C, Garin J, Pineau C,  (2016) &quot;Looking for Missing Proteins in the Proteome of Human Spermatozoa: An Update.&quot; <i>J Proteome Res</i> <b>15</b>(11):3998&ndash;4019; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27444420 27444420]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00400 10.1021/acs.jproteome.6b00400]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27444420 108].
 +
#Martinez-Val A, Garcia F, Xim&eacute;nez-Emb&uacute;n P, Ibarz N, Zarzuela E, Ruppen I, Mohammed S, Munoz J,  (2016) &quot;On the Statistical Significance of Compressed Ratios in Isobaric Labeling: A Cross-Platform Comparison.&quot; <i>J Proteome Res</i> <b>15</b>(9):3029&ndash;38; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27452035 27452035]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00151 10.1021/acs.jproteome.6b00151]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27452035 18].
 +
#Gautier EF, Ducamp S, Leduc M, Salnot V, Guillonneau F, Dussiot M, Hale J, Giarratana MC, Raimbault A, Douay L, Lacombe C, Mohandas N, Verdier F, Zermati Y, Mayeux P,  (2016) &quot;Comprehensive Proteomic Analysis of Human Erythropoiesis.&quot; <i>Cell Rep</i> <b>16</b>(5):1470&ndash;84; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27452463 27452463]; doi: [https://dx.doi.org/10.1016/j.celrep.2016.06.085 10.1016/j.celrep.2016.06.085]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27452463 235].
 +
#Liao Y, Castello A, Fischer B, Leicht S, F&ouml;ehr S, Frese CK, Ragan C, Kurscheid S, Pagler E, Yang H, Krijgsveld J, Hentze MW, Preiss T,  (2016) &quot;The Cardiomyocyte RNA-Binding Proteome: Links to Intermediary Metabolism and Heart Disease.&quot; <i>Cell Rep</i> <b>16</b>(5):1456&ndash;69; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27452465 27452465]; doi: [https://dx.doi.org/10.1016/j.celrep.2016.06.084 10.1016/j.celrep.2016.06.084]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27452465 7].
 +
#Castello A, Fischer B, Frese CK, Horos R, Alleaume AM, Foehr S, Curk T, Krijgsveld J, Hentze MW,  (2016) &quot;Comprehensive Identification of RNA-Binding Domains in Human Cells.&quot; <i>Mol Cell</i> <b>63</b>(4):696&ndash;710; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27453046 27453046]; doi: [https://dx.doi.org/10.1016/j.molcel.2016.06.029 10.1016/j.molcel.2016.06.029]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27453046 12].
 +
#Thomsen MS, Birkelund S, Burkhart A, Stensballe A, Moos T,  (2016) &quot;Synthesis and deposition of basement membrane proteins by primary brain capillary endothelial cells in a murine model of the blood-brain barrier.&quot; <i>J Neurochem</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27456748 27456748]; doi: [https://dx.doi.org/10.1111/jnc.13747 10.1111/jnc.13747]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27456748 12].
 +
#Zhao Y, Tian B, Sadygov RG, Zhang Y, Brasier AR,  (2016) &quot;Integrative proteomic analysis reveals reprograming tumor necrosis factor signaling in epithelial mesenchymal transition.&quot; <i>J Proteomics</i> <b>148</b>:126&ndash;38; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27461979 27461979]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.07.014 10.1016/j.jprot.2016.07.014]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27461979 30].
 +
#Osinalde N, Sanchez-Quiles V, Akimov V, Aloria K, Arizmendi JM, Blagoev B, Kratchmarova I,  (2016) &quot;Characterization of Receptor-Associated Protein Complex Assembly in Interleukin (IL)-2- and IL-15-Activated T-Cell Lines.&quot; <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27463037 27463037]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00233 10.1021/acs.jproteome.6b00233]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27463037 55].
 +
#Liu Z, Wang F, Chen J, Zhou Y, Zou H,  (2016) &quot;Modulating the selectivity of affinity absorbents to multi-phosphopeptides by a competitive substitution strategy.&quot; <i>J Chromatogr A</i> <b>1461</b>:35&ndash;41; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27470094 27470094]; doi: [https://dx.doi.org/10.1016/j.chroma.2016.07.042 10.1016/j.chroma.2016.07.042]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27470094 9].
 +
#Voisinne G, Garc&iacute;a-Blesa A, Chaoui K, Fiore F, Bergot E, Girard L, Malissen M, Burlet-Schiltz O, Gonzalez de Peredo A, Malissen B, Roncagalli R,  (2016) &quot;Co-recruitment analysis of the CBL and CBLB signalosomes in primary T cells identifies CD5 as a key regulator of TCR-induced ubiquitylation.&quot; <i>Mol Syst Biol</i> <b>12</b>(7):876; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27474268 27474268]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27474268 178].
 +
#Uyy E, Suica VI, Boteanu RM, Manda D, Baciu AE, Badiu C, Antohe F,  (2016) &quot;Endoplasmic Reticulum Chaperones Are Potential Active Factors in Thyroid Tumorigenesis.&quot; <i>J Proteome Res</i> <b>15</b>(9):3377&ndash;87; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27480176 27480176]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00567 10.1021/acs.jproteome.6b00567]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27480176 100].
 +
#S&ouml;derholm S, Kainov DE, &Ouml;hman T, Denisova OV, Schepens B, Kulesskiy E, Imanishi SY, Corthals G, Hintsanen P, Aittokallio T, Saelens X, Matikainen S, Nyman TA,  (2016) &quot;Phosphoproteomics to Characterize Host Response During Influenza A Virus Infection of Human Macrophages.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(10):3203&ndash;3219; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27486199 27486199]; doi: [https://dx.doi.org/10.1074/mcp.M116.057984 10.1074/mcp.M116.057984]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27486199 20].
 +
#Deslyper G, Colgan TJ, Cooper AJ, Holland CV, Carolan JC,  (2016) &quot;A Proteomic Investigation of Hepatic Resistance to Ascaris in a Murine Model.&quot; <i>PLoS Negl Trop Dis</i> <b>10</b>(8):e0004837; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27490109 27490109]; doi: [https://dx.doi.org/10.1371/journal.pntd.0004837 10.1371/journal.pntd.0004837]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27490109 12].
 +
#Peltier J, Roperch JP, Audebert S, Borg JP, Camoin L,  (2016) &quot;Quantitative proteomic analysis exploring progression of colorectal cancer: Modulation of the serpin family.&quot; <i>J Proteomics</i> <b>148</b>:139&ndash;48; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27492143 27492143]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.07.031 10.1016/j.jprot.2016.07.031]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27492143 2].
 +
#Roberts AJ, Fairlamb AH,  (2016) &quot;The N-myristoylome of Trypanosoma cruzi.&quot; <i>Sci Rep</i> <b>6</b>:31078; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27492267 27492267]; doi: [https://dx.doi.org/10.1038/srep31078 10.1038/srep31078]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27492267 12].
 +
#Dubois ML, Bastin C, L&eacute;vesque D, Boisvert FM,  (2016) &quot;Comprehensive Characterization of Minichromosome Maintenance Complex (MCM) Protein Interactions Using Affinity and Proximity Purifications Coupled to Mass Spectrometry.&quot; <i>J Proteome Res</i> <b>15</b>(9):2924&ndash;34; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27494197 27494197]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b01081 10.1021/acs.jproteome.5b01081]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27494197 109].
 +
#Lach&eacute;n-Montes M, Gonz&aacute;lez-Morales A, de Morentin XM, P&eacute;rez-Valderrama E, Aus&iacute;n K, Zelaya MV, Serna A, Aso E, Ferrer I, Fern&aacute;ndez-Irigoyen J, Santamar&iacute;a E,  (2016) &quot;An early dysregulation of FAK and MEK/ERK signaling pathways precedes the &beta;-amyloid deposition in the olfactory bulb of APP/PS1 mouse model of Alzheimer&#39;s disease.&quot; <i>J Proteomics</i> <b>148</b>:149&ndash;58; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27498392 27498392]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.07.032 10.1016/j.jprot.2016.07.032]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27498392 20].
 +
#Drake JM, Paull EO, Graham NA, Lee JK, Smith BA, Titz B, Stoyanova T, Faltermeier CM, Uzunangelov V, Carlin DE, Fleming DT, Wong CK, Newton Y, Sudha S, Vashisht AA, Huang J, Wohlschlegel JA, Graeber TG, Witte ON, Stuart JM,  (2016) &quot;Phosphoproteome Integration Reveals Patient-Specific Networks in Prostate Cancer.&quot; <i>Cell</i> <b>166</b>(4):1041&ndash;54; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27499020 27499020]; doi: [https://dx.doi.org/10.1016/j.cell.2016.07.007 10.1016/j.cell.2016.07.007]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27499020 69].
 +
#Marino F, Mommen GP, Jeko A, Meiring HD, van Gaans-van den Brink JA, Scheltema RA, van Els CA, Heck AJ,  (2016) &quot;Arginine (Di)methylated Human Leukocyte Antigen Class I Peptides Are Favorably Presented by HLA-B*07.&quot; <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27503676 27503676]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00528 10.1021/acs.jproteome.6b00528]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27503676 31].
 +
#Budayeva HG, Cristea IM,  (2016) &quot;Human Sirtuin 2 Localization, Transient Interactions, and Impact on the Proteome Point to Its Role in Intracellular Trafficking.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(10):3107&ndash;3125; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27503897 27503897]; doi: [https://dx.doi.org/10.1074/mcp.M116.061333 10.1074/mcp.M116.061333]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27503897 15].
 +
#Gat-Yablonski G, Finka A, Pinto G, Quadroni M, Shtaif B, Goloubinoff P,  (2016) &quot;Quantitative proteomics of rat livers shows that unrestricted feeding is stressful for proteostasis with implications on life span.&quot; <i>Aging (Albany NY)</i> <b>8</b>(8):1735&ndash;58; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27508340 27508340]; doi: [https://dx.doi.org/10.18632/aging.101009 10.18632/aging.101009]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27508340 18].
 +
#Swenson JM, Colmenares SU, Strom AR, Costes SV, Karpen GH,  (2016) &quot;The composition and organization of Drosophila heterochromatin are heterogeneous and dynamic.&quot; <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27514026 27514026]; doi: [https://dx.doi.org/10.7554/eLife.16096 10.7554/eLife.16096]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27514026 4].
 +
#Naboulsi W, Bracht T, Megger DA, Reis H, Ahrens M, Turewicz M, Eisenacher M, Tautges S, Canbay AE, Meyer HE, Weber F, Baba HA, Sitek B,  (2016) &quot;Quantitative proteome analysis reveals the correlation between endocytosis-associated proteins and hepatocellular carcinoma dedifferentiation.&quot; <i>Biochim Biophys Acta</i> <b>1864</b>(11):1579&ndash;85; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27519163 27519163]; doi: [https://dx.doi.org/10.1016/j.bbapap.2016.08.005 10.1016/j.bbapap.2016.08.005]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27519163 36].
 +
#Rasmussen MH, Lyskj&aelig;r I, Jersie-Christensen RR, Tarpgaard LS, Primdal-Bengtson B, Nielsen MM, Pedersen JS, Hansen TP, Hansen F, Olsen JV, Pfeiffer P, &Oslash;rntoft TF, Andersen CL,  (2016) &quot;miR-625-3p regulates oxaliplatin resistance by targeting MAP2K6-p38 signalling in human colorectal adenocarcinoma cells.&quot; <i>Nat Commun</i> <b>7</b>:12436; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27526785 27526785]; doi: [https://dx.doi.org/10.1038/ncomms12436 10.1038/ncomms12436]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27526785 24].
 +
#Chatterjee S, Stupp GS, Park SK, Ducom JC, Yates JR 3rd, Su AI, Wolan DW,  (2016) &quot;A comprehensive and scalable database search system for metaproteomics.&quot; <i>BMC Genomics</i> <b>17</b>(1):642; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27528457 27528457]; doi: [https://dx.doi.org/10.1186/s12864-016-2855-3 10.1186/s12864-016-2855-3]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27528457 28].
 +
#Liu L, Phua YW, Lee RS, Ma X, Jenkins Y, Novy K, Humphrey ES, Chan H, Shearer R, Ong PC, Dai W, Saunders DN, Lucet IS, Daly RJ,  (2016) &quot;Homo- and Heterotypic Association Regulates Signaling by the SgK269/PEAK1 and SgK223 Pseudokinases.&quot; <i>J Biol Chem</i> <b>291</b>(41):21571&ndash;21583; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27531744 27531744]; doi: [https://dx.doi.org/10.1074/jbc.M116.748897 10.1074/jbc.M116.748897]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27531744 6].
 +
#Mattei B, Spinelli F, Pontiggia D, De Lorenzo G,  (2016) &quot;Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.&quot; <i>Front Plant Sci</i> <b>7</b>:1107; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27532006 27532006]; doi: [https://dx.doi.org/10.3389/fpls.2016.01107 10.3389/fpls.2016.01107]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27532006 12].
 +
#Zacharias LG, Hartmann AK, Song E, Zhao J, Zhu R, Mirzaei P, Mechref Y,  (2016) &quot;HILIC and ERLIC Enrichment of Glycopeptides Derived from Breast and Brain Cancer Cells.&quot; <i>J Proteome Res</i> <b>15</b>(10):3624&ndash;3634; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27533485 27533485]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00429 10.1021/acs.jproteome.6b00429]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27533485 36].
 +
#Solari FA, Mattheij NJ, Burkhart JM, Swieringa F, Collins PW, Cosemans JM, Sickmann A, Heemskerk JW, Zahedi RP,  (2016) &quot;Combined Quantification of the Global Proteome, Phosphoproteome, and Proteolytic Cleavage to Characterize Altered Platelet Functions in the Human Scott Syndrome.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(10):3154&ndash;3169; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27535140 27535140]; doi: [https://dx.doi.org/10.1074/mcp.M116.060368 10.1074/mcp.M116.060368]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27535140 23].
 +
#Wei W, Luo W, Wu F, Peng X, Zhang Y, Zhang M, Zhao Y, Su N, Qi Y, Chen L, Zhang Y, Wen B, He F, Xu P,  (2016) &quot;Deep Coverage Proteomics Identifies More Low-Abundance Missing Proteins in Human Testis Tissue with Q-Exactive HF Mass Spectrometer.&quot; <i>J Proteome Res</i> <b>15</b>(11):3988&ndash;3997; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27535590 27535590]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00390 10.1021/acs.jproteome.6b00390]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27535590 150].
 +
#Dob&oacute; J, Szak&aacute;cs D, Oroszl&aacute;n G, Kortvely E, Kiss B, Boros E, Sz&aacute;sz R, Z&aacute;vodszky P, G&aacute;l P, P&aacute;l G,  (2016) &quot;MASP-3 is the exclusive pro-factor D activator in resting blood: the lectin and the alternative complement pathways are fundamentally linked.&quot; <i>Sci Rep</i> <b>6</b>:31877; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27535802 27535802]; doi: [https://dx.doi.org/10.1038/srep31877 10.1038/srep31877]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27535802 6].
 +
#Zhang P, Karani R, Turner RL, Dufresne C, Ferri S, Van Eyk JE, Semba RD,  (2016) &quot;The proteome of normal human retrobulbar optic nerve and sclera.&quot; <i>Proteomics</i> <b>16</b>(19):2592&ndash;2596; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27538499 27538499]; doi: [https://dx.doi.org/10.1002/pmic.201600229 10.1002/pmic.201600229]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27538499 60].
 +
#Walley JW, Sartor RC, Shen Z, Schmitz RJ, Wu KJ, Urich MA, Nery JR, Smith LG, Schnable JC, Ecker JR, Briggs SP,  (2016) &quot;Integration of omic networks in a developmental atlas of maize.&quot; <i>Science</i> <b>353</b>(6301):814&ndash;8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27540173 27540173]; doi: [https://dx.doi.org/10.1126/science.aag1125 10.1126/science.aag1125]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27540173 10350].
 +
#Xie Y, Wang J, Zhang Y, Liu X, Wang X, Liu K, Huang X, Wang Y,  (2016) &quot;Quantitative profiling of spreading-coupled protein tyrosine phosphorylation in migratory cells.&quot; <i>Sci Rep</i> <b>6</b>:31811; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27554326 27554326]; doi: [https://dx.doi.org/10.1038/srep31811 10.1038/srep31811]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27554326 6].
 +
#He PH, Dong WX, Chu XL, Feng MG, Ying SH,  (2016) &quot;The cellular proteome is affected by a gelsolin (BbGEL1) during morphological transitions in aerobic surface versus liquid growth in the entomopathogenic fungus Beauveria bassiana.&quot; <i>Environ Microbiol</i> <b>18</b>(11):4153&ndash;4169; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27554994 27554994]; doi: [https://dx.doi.org/10.1111/1462-2920.13500 10.1111/1462-2920.13500]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27554994 34].
 +
#Viktorovskaya OV, Greco TM, Cristea IM, Thompson SR,  (2016) &quot;Identification of RNA Binding Proteins Associated with Dengue Virus RNA in Infected Cells Reveals Temporally Distinct Host Factor Requirements.&quot; <i>PLoS Negl Trop Dis</i> <b>10</b>(8):e0004921; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27556644 27556644]; doi: [https://dx.doi.org/10.1371/journal.pntd.0004921 10.1371/journal.pntd.0004921]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27556644 7].
 +
#Cassidy L, Prasse D, Linke D, Schmitz RA, Tholey A,  (2016) &quot;Combination of Bottom-up 2D-LC-MS and Semi-top-down GelFree-LC-MS Enhances Coverage of Proteome and Low Molecular Weight Short Open Reading Frame Encoded Peptides of the Archaeon Methanosarcina mazei.&quot; <i>J Proteome Res</i> <b>15</b>(10):3773&ndash;3783; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27557128 27557128]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00569 10.1021/acs.jproteome.6b00569]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27557128 12].
 +
#H&auml;upl B, Ihling CH, Sinz A,  (2016) &quot;Protein Interaction Network of Human Protein Kinase D2 Revealed by Chemical Cross-Linking/Mass Spectrometry.&quot; <i>J Proteome Res</i> <b>15</b>(10):3686&ndash;3699; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27559607 27559607]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00513 10.1021/acs.jproteome.6b00513]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27559607 81].
 +
#Jiang Y, Lee J, Lee JH, Lee JW, Kim JH, Choi WH, Yoo YD, Cha-Molstad H, Kim BY, Kwon YT, Noh SA, Kim KP, Lee MJ,  (2016) &quot;The arginylation branch of the N-end rule pathway positively regulates cellular autophagic flux and clearance of proteotoxic proteins.&quot; <i>Autophagy</i> <b>12</b>(11):2197&ndash;2212; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27560450 27560450]; doi: [https://dx.doi.org/10.1080/15548627.2016.1222991 10.1080/15548627.2016.1222991]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27560450 2].
 +
#Hesse AM, Dupierris V, Adam C, Court M, Barthe D, Emadali A, Masselon C, Ferro M, Bruley C,  (2016) &quot;hEIDI: An Intuitive Application Tool To Organize and Treat Large-Scale Proteomics Data.&quot; <i>J Proteome Res</i> <b>15</b>(10):3896&ndash;3903; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27560970 27560970]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00853 10.1021/acs.jproteome.5b00853]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27560970 142].
 +
#Ross SH, Rollings C, Anderson KE, Hawkins PT, Stephens LR, Cantrell DA,  (2016) &quot;Phosphoproteomic Analyses of Interleukin 2 Signaling Reveal Integrated JAK Kinase-Dependent and -Independent Networks in CD8(+) T Cells.&quot; <i>Immunity</i> <b>45</b>(3):685&ndash;700; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27566939 27566939]; doi: [https://dx.doi.org/10.1016/j.immuni.2016.07.022 10.1016/j.immuni.2016.07.022]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27566939 208].
 +
#Moulos P, Samiotaki M, Panayotou G, Dedos SG,  (2016) &quot;Combinatory annotation of cell membrane receptors and signalling pathways of Bombyx mori prothoracic glands.&quot; <i>Sci Data</i> <b>3</b>:160073; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27576083 27576083]; doi: [https://dx.doi.org/10.1038/sdata.2016.73 10.1038/sdata.2016.73]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27576083 6].
 +
#Larsen SC, Sylvestersen KB, Mund A, Lyon D, Mullari M, Madsen MV, Daniel JA, Jensen LJ, Nielsen ML,  (2016) &quot;Proteome-wide analysis of arginine monomethylation reveals widespread occurrence in human cells.&quot; <i>Sci Signal</i> <b>9</b>(443):rs9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27577262 27577262]; doi: [https://dx.doi.org/10.1126/scisignal.aaf7329 10.1126/scisignal.aaf7329]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27577262 10].
 +
#Delaveau T, Davoine D, Jolly A, Vallot A, Rouvi&egrave;re JO, Gerber A, Brochet S, Plessis M, Roquigny R, Merhej J, Leger T, Garcia C, Lelandais G, Laine E, Palancade B, Devaux F, Garcia M,  (2016) &quot;Tma108, a putative M1 aminopeptidase, is a specific nascent chain-associated protein in Saccharomyces cerevisiae.&quot; <i>Nucleic Acids Res</i> <b>44</b>(18):8826&ndash;8841; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27580715 27580715]; doi: [https://dx.doi.org/10.1093/nar/gkw732 10.1093/nar/gkw732]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27580715 19].
 +
#Lee H, Chae S, Park J, Bae J, Go EB, Kim SJ, Kim H, Hwang D, Lee SW, Lee SY,  (2016) &quot;Comprehensive Proteome Profiling of Platelet Identified a Protein Profile Predictive of Responses to An Antiplatelet Agent Sarpogrelate.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(11):3461&ndash;3472; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27601597 27601597]; doi: [https://dx.doi.org/10.1074/mcp.M116.059154 10.1074/mcp.M116.059154]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27601597 96].
 +
#Treitz C, Enjalbert B, Portais JC, Letisse F, Tholey A,  (2016) &quot;Differential quantitative proteome analysis of Escherichia coli grown on acetate versus glucose.&quot; <i>Proteomics</i> <b>16</b>(21):2742&ndash;2746; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27604403 27604403]; doi: [https://dx.doi.org/10.1002/pmic.201600303 10.1002/pmic.201600303]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27604403 42].
 +
#Mauri M, Kirchner M, Aharoni R, Ciolli Mattioli C, van den Bruck D, Gutkovitch N, Modepalli V, Selbach M, Moran Y, Chekulaeva M,  (2016) &quot;Conservation of miRNA-mediated silencing mechanisms across 600 million years of animal evolution.&quot; <i>Nucleic Acids Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27604873 27604873]; doi: [https://dx.doi.org/10.1093/nar/gkw792 10.1093/nar/gkw792]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27604873 35].
 +
#Lee J, McKinney KQ, Pavlopoulos AJ, Han MH, Kim SH, Kim HJ, Hwang S,  (2016) &quot;Exosomal proteome analysis of cerebrospinal fluid detects biosignatures of neuromyelitis optica and multiple sclerosis.&quot; <i>Clin Chim Acta</i> <b>462</b>:118&ndash;126; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27609124 27609124]; doi: [https://dx.doi.org/10.1016/j.cca.2016.09.001 10.1016/j.cca.2016.09.001]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27609124 24].
 +
#Mulvaney KM, Matson JP, Siesser PF, Tamir TY, Goldfarb D, Jacobs TM, Cloer EW, Harrison JS, Vaziri C, Cook JG, Major MB,  (2016) &quot;Identification and Characterization of MCM3 as a Kelch-like ECH-associated Protein 1 (KEAP1) Substrate.&quot; <i>J Biol Chem</i> <b>291</b>(45):23719&ndash;23733; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27621311 27621311]; doi: [https://dx.doi.org/10.1074/jbc.M116.729418 10.1074/jbc.M116.729418]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27621311 22].
 +
#Subramanian S, Souleimanov A, Smith DL,  (2016) &quot;Proteomic Studies on the Effects of Lipo-Chitooligosaccharide and Thuricin 17 under Unstressed and Salt Stressed Conditions in Arabidopsis thaliana.&quot; <i>Front Plant Sci</i> <b>7</b>:1314; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27625672 27625672]; doi: [https://dx.doi.org/10.3389/fpls.2016.01314 10.3389/fpls.2016.01314]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27625672 36].
 +
#Stroud DA, Surgenor EE, Formosa LE, Reljic B, Frazier AE, Dibley MG, Osellame LD, Stait T, Beilharz TH, Thorburn DR, Salim A, Ryan MT,  (2016) &quot;Accessory subunits are integral for assembly and function of human mitochondrial complex I.&quot; <i>Nature</i> <b>538</b>(7623):123&ndash;126; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27626371 27626371]; doi: [https://dx.doi.org/10.1038/nature19754 10.1038/nature19754]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27626371 10].
 +
#Worah K, Mathan TS, Vu Manh TP, Keerthikumar S, Schreibelt G, Tel J, Duiveman-de Boer T, Sk&ouml;ld AE, van Spriel AB, de Vries IJ, Huynen MA, Wessels HJ, Gloerich J, Dalod M, Lasonder E, Figdor CG, Buschow SI,  (2016) &quot;Proteomics of Human Dendritic Cell Subsets Reveals Subset-Specific Surface Markers and Differential Inflammasome Function.&quot; <i>Cell Rep</i> <b>16</b>(11):2953&ndash;66; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27626665 27626665]; doi: [https://dx.doi.org/10.1016/j.celrep.2016.08.023 10.1016/j.celrep.2016.08.023]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27626665 719].
 +
#Bennike TB, Ellingsen T, Glerup H, Bonderup OK, Carlsen TG, Meyer MK, B&oslash;gsted M, Christiansen G, Birkelund S, Andersen V, Stensballe A,  (2016) &quot;Proteome Analysis of Rheumatoid Arthritis Gut Mucosa.&quot; <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27627584 27627584]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00598 10.1021/acs.jproteome.6b00598]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27627584 33].
 +
#Altmann C, Hardt S, Fischer C, Heidler J, Lim HY, H&auml;ussler A, Albuquerque B, Zimmer B, M&ouml;ser C, Behrends C, Koentgen F, Wittig I, Schmidt MH, Clement AM, Deller T, Tegeder I,  (2016) &quot;Progranulin overexpression in sensory neurons attenuates neuropathic pain in mice: Role of autophagy.&quot; <i>Neurobiol Dis</i> <b>96</b>:294&ndash;311; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27629805 27629805]; doi: [https://dx.doi.org/10.1016/j.nbd.2016.09.010 10.1016/j.nbd.2016.09.010]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27629805 12].
 +
#Musunuri S, Khoonsari PE, Mikus M, Wetterhall M, H&auml;ggmark-M&auml;nberg A, Lannfelt L, Erlandsson A, Bergquist J, Ingelsson M, Shevchenko G, Nilsson P, Kultima K,  (2016) &quot;Increased Levels of Extracellular Microvesicle Markers and Decreased Levels of Endocytic/Exocytic Proteins in the Alzheimer&#39;s Disease Brain.&quot; <i>J Alzheimers Dis</i> <b>54</b>(4):1671&ndash;1686; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27636840 27636840]; doi: [https://dx.doi.org/10.3233/JAD-160271 10.3233/JAD-160271]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27636840 107].
 +
#Eyckerman S, Impens F, Van Quickelberghe E, Samyn N, Vandemoortele G, De Sutter D, Tavernier J, Gevaert K,  (2016) &quot;Intelligent Mixing of Proteomes for Elimination of False Positives in Affinity Purification-Mass Spectrometry.&quot; <i>J Proteome Res</i> <b>15</b>(10):3929&ndash;3937; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27640904 27640904]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00517 10.1021/acs.jproteome.6b00517]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27640904 95].
 +
#Jean Beltran PM, Mathias RA, Cristea IM,  (2016) &quot;A Portrait of the Human Organelle Proteome In Space and Time during Cytomegalovirus Infection.&quot; <i>Cell Syst</i> <b>3</b>(4):361&ndash;373.e6; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27641956 27641956]; doi: [https://dx.doi.org/10.1016/j.cels.2016.08.012 10.1016/j.cels.2016.08.012]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27641956 45].
 +
#Athanason MG, Stevens SM Jr, Burkhardt BR,  (2016) &quot;Hepatic SILAC proteomic data from PANDER transgenic model.&quot; <i>Data Brief</i> <b>9</b>:159&ndash;62; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27642623 27642623]; doi: [https://dx.doi.org/10.1016/j.dib.2016.08.017 10.1016/j.dib.2016.08.017]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27642623 18].
 +
#Vu LD, Stes E, Van Bel M, Nelissen H, Maddelein D, Inz&eacute; D, Coppens F, Martens L, Gevaert K, De Smet I,  (2016) &quot;Up-to-Date Workflow for Plant (Phospho)proteomics Identifies Differential Drought-Responsive Phosphorylation Events in Maize Leaves.&quot; <i>J Proteome Res</i> <b>15</b>(12):4304&ndash;4317; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27643528 27643528]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00348 10.1021/acs.jproteome.6b00348]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27643528 28].
 +
#Kubicek-Sutherland JZ, Lofton H, Vestergaard M, Hjort K, Ingmer H, Andersson DI,  (2017) &quot;Antimicrobial peptide exposure selects for Staphylococcus aureus resistance to human defence peptides.&quot; <i>J Antimicrob Chemother</i> <b>72</b>(1):115&ndash;127; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27650186 27650186]; doi: [https://dx.doi.org/10.1093/jac/dkw381 10.1093/jac/dkw381]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27650186 42].
 +
#Goldman AR, Bitler BG, Schug Z, Conejo-Garcia JR, Zhang R, Speicher DW,  (2016) &quot;The Primary Effect on the Proteome of ARID1A-mutated Ovarian Clear Cell Carcinoma is Downregulation of the Mevalonate Pathway at the Post-transcriptional Level.&quot; <i>Mol Cell Proteomics</i> <b>15</b>(11):3348&ndash;3360; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27654507 27654507]; doi: [https://dx.doi.org/10.1074/mcp.M116.062539 10.1074/mcp.M116.062539]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27654507 12].
 +
#Radzikowski JL, Vedelaar S, Siegel D, Ortega &Aacute;D, Schmidt A, Heinemann M,  (2016) &quot;Bacterial persistence is an active &sigma;S stress response to metabolic flux limitation.&quot; <i>Mol Syst Biol</i> <b>12</b>(9):882; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27655400 27655400]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27655400 30].
 +
#Rose CM, Isasa M, Ordureau A, Prado MA, Beausoleil SA, Jedrychowski MP, Finley DJ, Harper JW, Gygi SP,  (2016) &quot;Highly Multiplexed Quantitative Mass Spectrometry Analysis of Ubiquitylomes.&quot; <i>Cell Syst</i> <b>3</b>(4):395&ndash;403.e4; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27667366 27667366]; doi: [https://dx.doi.org/10.1016/j.cels.2016.08.009 10.1016/j.cels.2016.08.009]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27667366 26].
 +
#Abad MA, Zou J, Medina-Pritchard B, Nigg EA, Rappsilber J, Santamaria A, Jeyaprakash AA,  (2016) &quot;Ska3 Ensures Timely Mitotic Progression by Interacting Directly With Microtubules and Ska1 Microtubule Binding Domain.&quot; <i>Sci Rep</i> <b>6</b>:34042; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27667719 27667719]; doi: [https://dx.doi.org/10.1038/srep34042 10.1038/srep34042]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27667719 10].
 +
#D&ouml;rfel MJ, Fang H, Crain J, Klingener M, Weiser J, Lyon GJ,  (2016) &quot;Proteomic and genomic characterization of a yeast model for Ogden syndrome.&quot; <i>Yeast</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27668839 27668839]; doi: [https://dx.doi.org/10.1002/yea.3211 10.1002/yea.3211]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27668839 1].
 +
#Lee A, Miller D, Henry R, Paruchuri VD, O&#39;Meally RN, Boronina T, Cole RN, Zachara NE,  (2016) &quot;Combined Antibody/Lectin Enrichment Identifies Extensive Changes in the O-GlcNAc Sub-proteome upon Oxidative Stress.&quot; <i>J Proteome Res</i> <b>15</b>(12):4318&ndash;4336; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27669760 27669760]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00369 10.1021/acs.jproteome.6b00369]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27669760 14].
 +
#Smirnov A, F&ouml;rstner KU, Holmqvist E, Otto A, G&uuml;nster R, Becher D, Reinhardt R, Vogel J,  (2016) &quot;Grad-seq guides the discovery of ProQ as a major small RNA-binding protein.&quot; <i>Proc Natl Acad Sci U S A</i> <b>113</b>(41):11591&ndash;11596; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27671629 27671629]; doi: [https://dx.doi.org/10.1073/pnas.1609981113 10.1073/pnas.1609981113]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27671629 200].
 +
#Lyon SM, Mayampurath A, Rogers MR, Wolfgeher DJ, Fisher SM, Volchenboum SL, He TC, Reid RR,  (2016) &quot;A method for whole protein isolation from human cranial bone.&quot; <i>Anal Biochem</i> <b>515</b>:33&ndash;39; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27677936 27677936]; doi: [https://dx.doi.org/10.1016/j.ab.2016.09.021 10.1016/j.ab.2016.09.021]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27677936 10].
 +
#Larkin SE, Johnston HE, Jackson TR, Jamieson DG, Roumeliotis TI, Mockridge CI, Michael A, Manousopoulou A, Papachristou EK, Brown MD, Clarke NW, Pandha H, Aukim-Hastie CL, Cragg MS, Garbis SD, Townsend PA,  (2016) &quot;Detection of candidate biomarkers of prostate cancer progression in serum: a depletion-free 3D LC/MS quantitative proteomics pilot study.&quot; <i>Br J Cancer</i> <b>115</b>(9):1078&ndash;1086; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27685442 27685442]; doi: [https://dx.doi.org/10.1038/bjc.2016.291 10.1038/bjc.2016.291]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27685442 8].
 +
#Martello R, Leutert M, Jungmichel S, Bilan V, Larsen SC, Young C, Hottiger MO, Nielsen ML,  (2016) &quot;Proteome-wide identification of the endogenous ADP-ribosylome of mammalian cells and tissue.&quot; <i>Nat Commun</i> <b>7</b>:12917; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27686526 27686526]; doi: [https://dx.doi.org/10.1038/ncomms12917 10.1038/ncomms12917]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27686526 15].
 +
#Mathieu AA, Ohl-S&eacute;guy E, Dubois ML, Jean D, Jones C, Boudreau F, Boisvert FM,  (2016) &quot;Subcellular proteomics analysis of different stages of colorectal cancer cell lines.&quot; <i>Proteomics</i> <b>16</b>(23):3009&ndash;3018; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27689624 27689624]; doi: [https://dx.doi.org/10.1002/pmic.201600314 10.1002/pmic.201600314]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27689624 52].
 +
#Greenwood EJ, Matheson NJ, Wals K, van den Boomen DJ, Antrobus R, Williamson JC, Lehner PJ,  (2016) &quot;Temporal proteomic analysis of HIV infection reveals remodelling of the host phosphoproteome by lentiviral Vif variants.&quot; <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27690223 27690223]; doi: [https://dx.doi.org/10.7554/eLife.18296 10.7554/eLife.18296]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27690223 10].
 +
#Gautier V, Cayrol C, Farache D, Roga S, Monsarrat B, Burlet-Schiltz O, Gonzalez de Peredo A, Girard JP,  (2016) &quot;Extracellular IL-33 cytokine, but not endogenous nuclear IL-33, regulates protein expression in endothelial cells.&quot; <i>Sci Rep</i> <b>6</b>:34255; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27694941 27694941]; doi: [https://dx.doi.org/10.1038/srep34255 10.1038/srep34255]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27694941 252].
 +
#Kwon OK, Kim S, Lee S,  (2016) &quot;Global proteomic analysis of lysine acetylation in zebrafish (Danio rerio) embryos.&quot; <i>Electrophoresis</i> <b>37</b>(23-24):3137&ndash;3145; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27696471 27696471]; doi: [https://dx.doi.org/10.1002/elps.201600210 10.1002/elps.201600210]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27696471 2].
 +
#Witzke KE, Rosowski K, M&uuml;ller C, Ahrens M, Eisenacher M, Megger DA, Knobloch J, Koch AR, Bracht T, Sitek B,  (2016) &quot;Quantitative Secretome Analysis of Activated Jurkat Cells using Click Chemistry-Based Enrichment of Secreted Glycoproteins.&quot; <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27696881 27696881]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00575 10.1021/acs.jproteome.6b00575]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27696881 82].
 +
#Baas R, Sijm A, van Teeffelen HA, van Es R, Vos HR, Marc Timmers HT,  (2016) &quot;Quantitative Proteomics of the SMAD (Suppressor of Mothers against Decapentaplegic) Transcription Factor Family Identifies Importin 5 as a Bone Morphogenic Protein Receptor SMAD-specific Importin.&quot; <i>J Biol Chem</i> <b>291</b>(46):24121&ndash;24132; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27703004 27703004]; doi: [https://dx.doi.org/10.1074/jbc.M116.748582 10.1074/jbc.M116.748582]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27703004 108].
 +
#Hughes CS, McConechy MK, Cochrane DR, Nazeran T, Karnezis AN, Huntsman DG, Morin GB,  (2016) &quot;Quantitative Profiling of Single Formalin Fixed Tumour Sections: proteomics for translational research.&quot; <i>Sci Rep</i> <b>6</b>:34949; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27713570 27713570]; doi: [https://dx.doi.org/10.1038/srep34949 10.1038/srep34949]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27713570 172].
 +
#McShane E, Sin C, Zauber H, Wells JN, Donnelly N, Wang X, Hou J, Chen W, Storchova Z, Marsh JA, Valleriani A, Selbach M,  (2016) &quot;Kinetic Analysis of Protein Stability Reveals Age-Dependent Degradation.&quot; <i>Cell</i> <b>167</b>(3):803&ndash;815.e21; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27720452 27720452]; doi: [https://dx.doi.org/10.1016/j.cell.2016.09.015 10.1016/j.cell.2016.09.015]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27720452 153].
 +
#Sivadasan R, Hornburg D, Drepper C, Frank N, Jablonka S, Hansel A, Lojewski X, Sterneckert J, Hermann A, Shaw PJ, Ince PG, Mann M, Meissner F, Sendtner M,  (2016) &quot;C9ORF72 interaction with cofilin modulates actin dynamics in motor neurons.&quot; <i>Nat Neurosci</i> <b>19</b>(12):1610&ndash;1618; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27723745 27723745]; doi: [https://dx.doi.org/10.1038/nn.4407 10.1038/nn.4407]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27723745 6].
 +
#Wang Q, Drouin EE, Yao C, Zhang J, Huang Y, Leon DR, Steere AC, Costello CE,  (2016) &quot;Immunogenic HLA-DR-Presented Self-Peptides Identified Directly from Clinical Samples of Synovial Tissue, Synovial Fluid, or Peripheral Blood in Patients with Rheumatoid Arthritis or Lyme Arthritis.&quot; <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27726376 27726376]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00386 10.1021/acs.jproteome.6b00386]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27726376 61].
 +
#Al-Daghri NM, Alokail MS, Manousopoulou A, Heinson A, Al-Attas O, Al-Saleh Y, Sabico S, Yakout S, Woelk CH, Chrousos GP, Garbis SD,  (2016) &quot;Sex-specific vitamin D effects on blood coagulation among overweight adults.&quot; <i>Eur J Clin Invest</i> <b>46</b>(12):1031&ndash;1040; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27727459 27727459]; doi: [https://dx.doi.org/10.1111/eci.12688 10.1111/eci.12688]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27727459 50].
 +
#Kroksveen AC, Guldbrandsen A, Vaudel M, Lereim RR, Barsnes H, Myhr KM, Torkildsen &Oslash;, Berven FS,  (2016) &quot;In-depth cerebrospinal fluid quantitative proteome and deglycoproteome analysis; presenting a comprehensive picture of pathways and processes affected by multiple sclerosis.&quot; <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27728768 27728768]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00659 10.1021/acs.jproteome.6b00659]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27728768 26].
 +
#Streeter I, Harrison PW, Faulconbridge A, The&nbsp;HipSci&nbsp;Consortium., Flicek P, Parkinson H, Clarke L,  (2016) &quot;The human-induced pluripotent stem cell initiative-data resources for cellular genetics.&quot; <i>Nucleic Acids Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27733501 27733501]; doi: [https://dx.doi.org/10.1093/nar/gkw928 10.1093/nar/gkw928]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27733501 20].
 +
#Kuzmanov U, Guo H, Buchsbaum D, Cosme J, Abbasi C, Isserlin R, Sharma P, Gramolini AO, Emili A,  (2016) &quot;Global phosphoproteomic profiling reveals perturbed signaling in a mouse model of dilated cardiomyopathy.&quot; <i>Proc Natl Acad Sci U S A</i> <b>113</b>(44):12592&ndash;12597; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27742792 27742792]; doi: [https://dx.doi.org/10.1073/pnas.1606444113 10.1073/pnas.1606444113]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27742792 126].
 +
#Seb&eacute;-Pedr&oacute;s A, Pe&ntilde;a MI, Capella-Guti&eacute;rrez S, Ant&oacute; M, Gabald&oacute;n T, Ruiz-Trillo I, Sabid&oacute; E,  (2016) &quot;High-Throughput Proteomics Reveals the Unicellular Roots of Animal Phosphosignaling and Cell Differentiation.&quot; <i>Dev Cell</i> <b>39</b>(2):186&ndash;197; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27746046 27746046]; doi: [https://dx.doi.org/10.1016/j.devcel.2016.09.019 10.1016/j.devcel.2016.09.019]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27746046 30].
 +
#Varano M, Gaspari M, Quirino A, Cuda G, Liberto MC, Foc&agrave; A,  (2016) &quot;Temperature-dependent regulation of the Ochrobactrum anthropi proteome.&quot; <i>Proteomics</i> <b>16</b>(23):3019&ndash;3024; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27753207 27753207]; doi: [https://dx.doi.org/10.1002/pmic.201600048 10.1002/pmic.201600048]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27753207 12].
 +
#Liljedahl L, Pedersen MH, Norlin J, McGuire JN, James P,  (2016) &quot;N-glycosylation proteome enrichment analysis in kidney reveals differences between diabetic mouse models.&quot; <i>Clin Proteomics</i> <b>13</b>:22; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27757071 27757071]; doi: [https://dx.doi.org/10.1186/s12014-016-9123-z 10.1186/s12014-016-9123-z]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27757071 48].
 +
#Zammit CM, Weiland F, Brugger J, Wade B, Winderbaum LJ, Nies DH, Southam G, Hoffmann P, Reith F,  (2016) &quot;Proteomic responses to gold(iii)-toxicity in the bacterium Cupriavidus metallidurans CH34.&quot; <i>Metallomics</i> <b>8</b>(11):1204&ndash;1216; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27757465 27757465]; doi: [https://dx.doi.org/10.1039/c6mt00142d 10.1039/c6mt00142d]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27757465 56].
 +
#Sialana FJ, Gulyassy P, M&aacute;jek P, Sj&ouml;stedt E, Kis V, M&uuml;ller AC, Rudashevskaya EL, Mulder J, Bennett KL, Lubec G,  (2016) &quot;Mass spectrometric analysis of synaptosomal membrane preparations for the determination of brain receptors, transporters and channels.&quot; <i>Proteomics</i> <b>16</b>(22):2911&ndash;2920; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27759936 27759936]; doi: [https://dx.doi.org/10.1002/pmic.201600234 10.1002/pmic.201600234]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27759936 86].
 +
#Duteil D, Tosic M, Lausecker F, Nenseth HZ, M&uuml;ller JM, Urban S, Willmann D, Petroll K, Messaddeq N, Arrigoni L, Manke T, Kornfeld JW, Br&uuml;ning JC, Zagoriy V, Meret M, Dengjel J, Kanouni T, Sch&uuml;le R,  (2016) &quot;Lsd1 Ablation Triggers Metabolic Reprogramming of Brown Adipose Tissue.&quot; <i>Cell Rep</i> <b>17</b>(4):1008&ndash;1021; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27760309 27760309]; doi: [https://dx.doi.org/10.1016/j.celrep.2016.09.053 10.1016/j.celrep.2016.09.053]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27760309 142].
 +
#Sarvaiya HA, Lazar IM,  (2016) &quot;Insulin stimulated MCF7 breast cancer cells: Proteome dataset.&quot; <i>Data Brief</i> <b>9</b>:579&ndash;584; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27761513 27761513]; doi: [https://dx.doi.org/10.1016/j.dib.2016.09.025 10.1016/j.dib.2016.09.025]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27761513 1].
 +
#Richter E, Harms M, Ventz K, N&ouml;lker R, Fraunholz MJ, Mostertz J, Hochgr&auml;fe F,  (2016) &quot;Quantitative Proteomics Reveals the Dynamics of Protein Phosphorylation in Human Bronchial Epithelial Cells during Internalization, Phagosomal Escape, and Intracellular Replication of Staphylococcus aureus.&quot; <i>J Proteome Res</i> <b>15</b>(12):4369&ndash;4386; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27762562 27762562]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00421 10.1021/acs.jproteome.6b00421]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27762562 75].
 +
#Assoni A, Coatti G, Valadares MC, Beccari M, Gomes J, Pelatti M, Mitne-Neto M, Carvalho VM, Zatz M,  (2016) &quot;Different Donors Mesenchymal Stromal Cells Secretomes Reveal Heterogeneous Profile of Relevance for Therapeutic Use.&quot; <i>Stem Cells Dev</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27762666 27762666]; doi: [https://dx.doi.org/10.1089/scd.2016.0218 10.1089/scd.2016.0218]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27762666 48].
 +
#Schanzenb&auml;cher CT, Sambandan S, Langer JD, Schuman EM,  (2016) &quot;Nascent Proteome Remodeling following Homeostatic Scaling at Hippocampal Synapses.&quot; <i>Neuron</i> <b>92</b>(2):358&ndash;371; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27764671 27764671]; doi: [https://dx.doi.org/10.1016/j.neuron.2016.09.058 10.1016/j.neuron.2016.09.058]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27764671 80].
 +
#Yu P, Hahne H, Wilhelm M, Kuster B,  (2017) &quot;Ethylene glycol improves electrospray ionization efficiency in bottom-up proteomics.&quot; <i>Anal Bioanal Chem</i> <b>409</b>(4):1049&ndash;1057; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27766361 27766361]; doi: [https://dx.doi.org/10.1007/s00216-016-0023-x 10.1007/s00216-016-0023-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27766361 147].
 +
#Isogai T, van der Kammen R, Bleijerveld OB, Goerdayal SS, Argenzio E, Altelaar AF, Innocenti M,  (2016) &quot;Quantitative Proteomics Illuminates a Functional Interaction between mDia2 and the Proteasome.&quot; <i>J Proteome Res</i> <b>15</b>(12):4624&ndash;4637; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27769112 27769112]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00718 10.1021/acs.jproteome.6b00718]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27769112 44].
 +
#Peng J, Cao J, Ng FM, Hill J,  (2016) &quot;Pseudomonas aeruginosa develops Ciprofloxacin resistance from low to high level with distinctive proteome changes.&quot; <i>J Proteomics</i> <b>152</b>:75&ndash;87; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27771372 27771372]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.10.005 10.1016/j.jprot.2016.10.005]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27771372 25].
 +
#Rafiee MR, Girardot C, Sigismondo G, Krijgsveld J,  (2016) &quot;Expanding the Circuitry of Pluripotency by Selective Isolation of Chromatin-Associated Proteins.&quot; <i>Mol Cell</i> <b>64</b>(3):624&ndash;635; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27773674 27773674]; doi: [https://dx.doi.org/10.1016/j.molcel.2016.09.019 10.1016/j.molcel.2016.09.019]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27773674 13].
 +
#Duncan O, Tr&ouml;sch J, Fenske R, Taylor NL, Millar AH,  (2016) &quot;Mapping the Triticum aestivum proteome.&quot; <i>Plant J</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27775198 27775198]; doi: [https://dx.doi.org/10.1111/tpj.13402 10.1111/tpj.13402]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27775198 28].
 +
#Maleki S, Kjellqvist S, Paloschi V, Magn&eacute; J, Branca RM, Du L, Hultenby K, Petrini J, Fuxe J, MIBAVA Leducq Consortium., Lehti&ouml; J, Franco-Cereceda A, Eriksson P, Bj&ouml;rck HM,  (2016) &quot;Mesenchymal state of intimal cells may explain higher propensity to ascending aortic aneurysm in bicuspid aortic valves.&quot; <i>Sci Rep</i> <b>6</b>:35712; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27779199 27779199]; doi: [https://dx.doi.org/10.1038/srep35712 10.1038/srep35712]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27779199 6].
 +
#Ward JA, McLellan L, Stockley M, Gibson KR, Whitlock GA, Knights C, Harrigan JA, Jacq X, Tate EW,  (2016) &quot;Quantitative Chemical Proteomic Profiling of Ubiquitin Specific Proteases in Intact Cancer Cells.&quot; <i>ACS Chem Biol</i> <b>11</b>(12):3268&ndash;3272; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27779380 27779380]; doi: [https://dx.doi.org/10.1021/acschembio.6b00766 10.1021/acschembio.6b00766]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27779380 18].
 +
#Cunsolo V, Fasoli E, Di Francesco A, Saletti R, Muccilli V, Gallina S, Righetti PG, Foti S,  (2016) &quot;Polyphemus, Odysseus and the ovine milk proteome.&quot; <i>J Proteomics</i> <b>152</b>:58&ndash;74; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27784645 27784645]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.10.007 10.1016/j.jprot.2016.10.007]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27784645 40].
 +
#Weisser H, Wright JC, Mudge JM, Gutenbrunner P, Choudhary JS,  (2016) &quot;Flexible Data Analysis Pipeline for High-Confidence Proteogenomics.&quot; <i>J Proteome Res</i> <b>15</b>(12):4686&ndash;4695; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27786492 27786492]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00765 10.1021/acs.jproteome.6b00765]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27786492 35].
 +
#Shishkova E, Hebert AS, Coon JJ,  (2016) &quot;Now, More Than Ever, Proteomics Needs Better Chromatography.&quot; <i>Cell Syst</i> <b>3</b>(4):321&ndash;324; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27788355 27788355]; doi: [https://dx.doi.org/10.1016/j.cels.2016.10.007 10.1016/j.cels.2016.10.007]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27788355 35].
 +
#Zhao M, Xu F, Wu F, Yu D, Su N, Zhang Y, Cheng L, Xu P,  (2016) &quot;iTRAQ-Based Membrane Proteomics Reveals Plasma Membrane Proteins Change During HepaRG Cell Differentiation.&quot; <i>J Proteome Res</i> <b>15</b>(12):4245&ndash;4257; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27790907 27790907]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00305 10.1021/acs.jproteome.6b00305]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27790907 1].
 +
#Ren Y, Yeoh KW, Hao P, Kon OL, Sze SK,  (2016) &quot;Irradiation of Epithelial Carcinoma Cells Upregulates Calcium-Binding Proteins That Promote Survival under Hypoxic Conditions.&quot; <i>J Proteome Res</i> <b>15</b>(12):4258&ndash;4264; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27790916 27790916]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00340 10.1021/acs.jproteome.6b00340]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27790916 3].
 +
#Lundquist PK, Mantegazza O, Stefanski A, St&uuml;hler K, Weber AP,  (2016) &quot;Surveying the Oligomeric State of Arabidopsis thaliana Chloroplasts.&quot; <i>Mol Plant</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27794502 27794502]; doi: [https://dx.doi.org/10.1016/j.molp.2016.10.011 10.1016/j.molp.2016.10.011]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27794502 42].
 +
#Fournier M, Orpinell M, Grauffel C, Scheer E, Garnier JM, Ye T, Chavant V, Joint M, Esashi F, Dejaegere A, G&ouml;nczy P, Tora L,  (2016) &quot;KAT2A/KAT2B-targeted acetylome reveals a role for PLK4 acetylation in preventing centrosome amplification.&quot; <i>Nat Commun</i> <b>7</b>:13227; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27796307 27796307]; doi: [https://dx.doi.org/10.1038/ncomms13227 10.1038/ncomms13227]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27796307 114].
 +
#Kentache T, Ben Abdelkrim A, Jouenne T, D&eacute; E, Hardouin J,  (2017) &quot;Global Dynamic Proteome Study of a Pellicle-forming Acinetobacter baumannii Strain.&quot; <i>Mol Cell Proteomics</i> <b>16</b>(1):100&ndash;112; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27799293 27799293]; doi: [https://dx.doi.org/10.1074/mcp.M116.061044 10.1074/mcp.M116.061044]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27799293 35].
 +
#Danda R, Ganapathy K, Sathe G, Madugundu AK, Ramachandran S, Krishnan UM, Khetan V, Rishi P, Keshava Prasad TS, Pandey A, Krishnakumar S, Gowda H, Elchuri SV,  (2016) &quot;Proteomic profiling of retinoblastoma by high resolution mass spectrometry.&quot; <i>Clin Proteomics</i> <b>13</b>:29; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27799869 27799869]; doi: [https://dx.doi.org/10.1186/s12014-016-9128-7 10.1186/s12014-016-9128-7]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27799869 1].
 +
#Fahrmann JF, Grapov D, Phinney BS, Stroble C, DeFelice BC, Rom W, Gandara DR, Zhang Y, Fiehn O, Pass H, Miyamoto S,  (2016) &quot;Proteomic profiling of lung adenocarcinoma indicates heightened DNA repair, antioxidant mechanisms and identifies LASP1 as a potential negative predictor of survival.&quot; <i>Clin Proteomics</i> <b>13</b>:31; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27799870 27799870]; doi: [https://dx.doi.org/10.1186/s12014-016-9132-y 10.1186/s12014-016-9132-y]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27799870 234].
 +
#Michalak M, Warnken U, Andr&eacute; S, Schn&ouml;lzer M, Gabius HJ, Kopitz J,  (2016) &quot;Detection of Proteome Changes in Human Colon Cancer Induced by Cell Surface Binding of Growth-Inhibitory Human Galectin-4 Using Quantitative SILAC-Based Proteomics.&quot; <i>J Proteome Res</i> <b>15</b>(12):4412&ndash;4422; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27801591 27801591]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00473 10.1021/acs.jproteome.6b00473]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27801591 6].
 +
#Karunakaran KP, Yu H, Jiang X, Chan Q, Goldberg MF, Jenkins MK, Foster LJ, Brunham RC,  (2017) &quot;Identification of MHC-Bound Peptides from Dendritic Cells Infected with Salmonella enterica Strain SL1344: Implications for a Nontyphoidal Salmonella Vaccine.&quot; <i>J Proteome Res</i> <b>16</b>(1):298&ndash;306; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27802388 27802388]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00926 10.1021/acs.jproteome.6b00926]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27802388 3].
 +
#Borziak K, &Aacute;lvarez-Fern&aacute;ndez A, L Karr T, Pizzari T, Dorus S,  (2016) &quot;The Seminal fluid proteome of the polyandrous Red junglefowl offers insights into the molecular basis of fertility, reproductive ageing and domestication.&quot; <i>Sci Rep</i> <b>6</b>:35864; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27804984 27804984]; doi: [https://dx.doi.org/10.1038/srep35864 10.1038/srep35864]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27804984 144].
 +
#Roberts JH, Liu F, Karnuta JM, Fitzgerald MC,  (2016) &quot;Discovery of Age-Related Protein Folding Stability Differences in the Mouse Brain Proteome.&quot; <i>J Proteome Res</i> <b>15</b>(12):4731&ndash;4741; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27806573 27806573]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00927 10.1021/acs.jproteome.6b00927]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27806573 48].
 +
#Mardakheh FK, Self A, Marshall CJ,  (2016) &quot;RHO binding to FAM65A regulates Golgi reorientation during cell migration.&quot; <i>J Cell Sci</i> <b>129</b>(24):4466&ndash;4479; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27807006 27807006]; doi: [https://dx.doi.org/10.1242/jcs.198614 10.1242/jcs.198614]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27807006 18].
 +
#Leach MD, Kim T, DiGregorio S, Collins C, Zhang Z, Duennwald ML, Cowen LE,  (2016) &quot;Candida albicans Is Resistant to Polyglutamine Aggregation and Toxicity.&quot; <i>G3 (Bethesda)</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27807047 27807047]; doi: [https://dx.doi.org/10.1534/g3.116.035675 10.1534/g3.116.035675]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27807047 6].
 +
#Chen Y, Xie Y, Xu L, Zhan S, Xiao Y, Gao Y, Wu B, Ge W,  (2017) &quot;Protein content and functional characteristics of serum-purified exosomes from patients with colorectal cancer revealed by quantitative proteomics.&quot; <i>Int J Cancer</i> <b>140</b>(4):900&ndash;913; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27813080 27813080]; doi: [https://dx.doi.org/10.1002/ijc.30496 10.1002/ijc.30496]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27813080 1].
 +
#Wang J, Mauvoisin D, Martin E, Atger F, Galindo AN, Dayon L, Sizzano F, Palini A, Kussmann M, Waridel P, Quadroni M, Duli&#x107; V, Naef F, Gachon F,  (2016) &quot;Nuclear Proteomics Uncovers Diurnal Regulatory Landscapes in Mouse Liver.&quot; <i>Cell Metab</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27818260 27818260]; doi: [https://dx.doi.org/10.1016/j.cmet.2016.10.003 10.1016/j.cmet.2016.10.003]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27818260 28].
 +
#Kogel U, Titz B, Schlage WK, Nury C, Martin F, Oviedo A, Lebrun S, Elamin A, Guedj E, Trivedi K, Ivanov NV, Vanscheeuwijck P, Peitsch MC, Hoeng J,  (2016) &quot;Evaluation of the Tobacco Heating System 2.2. Part 7: Systems toxicological assessment of a mentholated version revealed reduced cellular and molecular exposure effects compared with mentholated and non-mentholated cigarette smoke.&quot; <i>Regul Toxicol Pharmacol</i> <b>81 Suppl 2</b>:S123&ndash;S138; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27818347 27818347]; doi: [https://dx.doi.org/10.1016/j.yrtph.2016.11.001 10.1016/j.yrtph.2016.11.001]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27818347 36].
 +
#Hansen RK, Mund A, Poulsen SL, Sandoval M, Klement K, Tsouroula K, Tollenaere MA, R&auml;schle M, Soria R, Offermanns S, Worzfeld T, Grosse R, Brandt DT, Rozell B, Mann M, Cole F, Soutoglou E, Goodarzi AA, Daniel JA, Mailand N, Bekker-Jensen S,  (2016) &quot;SCAI promotes DNA double-strand break repair in distinct chromosomal contexts.&quot; <i>Nat Cell Biol</i> <b>18</b>(12):1357&ndash;1366; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27820601 27820601]; doi: [https://dx.doi.org/10.1038/ncb3436 10.1038/ncb3436]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27820601 12].
 +
#Schmitt K, Smolinski N, Neumann P, Schmaul S, Hofer-Pretz V, Braus GH, Valerius O,  (2016) &quot;Asc1p/RACK1 connects ribosomes to eukaryotic phospho-signaling.&quot; <i>Mol Cell Biol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27821475 27821475]; doi: [https://dx.doi.org/10.1128/MCB.00279-16 10.1128/MCB.00279-16]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27821475 274].
 +
#Mardakheh FK, Sailem HZ, K&uuml;mper S, Tape CJ, McCully RR, Paul A, Anjomani-Virmouni S, J&oslash;rgensen C, Poulogiannis G, Marshall CJ, Bakal C,  (2016) &quot;Proteomics profiling of interactome dynamics by colocalisation analysis (COLA).&quot; <i>Mol Biosyst</i> <b>13</b>(1):92&ndash;105; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27824369 27824369]; doi: [https://dx.doi.org/10.1039/c6mb00701e 10.1039/c6mb00701e]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27824369 16].
 +
#Warpman Berglund U, Sanjiv K, Gad H, Kalder&eacute;n C, Koolmeister T, Pham T, Gokturk C, Jafari R, Maddalo G, Seashore-Ludlow B, Chernobrovkin A, Manoilov A, Pateras IS, Rasti A, Jemth AS, Alml&ouml;f I, Loseva O, Visnes T, Einarsdottir BO, Gaugaz FZ, Saleh A, Platzack B, Wallner OA, Vallin KS, Henriksson M, Wakchaure P, Borhade S, Herr P, Kallberg Y, Baranczewski P, Homan EJ, Wiita E, Nagpal V, Meijer T, Schipper N, Rudd SG, Br&auml;utigam L, Lindqvist A, Filppula A, Lee TC, Artursson P, Nilsson JA, Gorgoulis VG, Lehti&ouml; J, Zubarev RA, Scobie M, Helleday T,  (2016) &quot;Validation and development of MTH1 inhibitors for treatment of cancer.&quot; <i>Ann Oncol</i> <b>27</b>(12):2275&ndash;2283; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27827301 27827301]; doi: [https://dx.doi.org/10.1093/annonc/mdw429 10.1093/annonc/mdw429]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27827301 4].
 +
#Liu Y, Sellegounder D, Sun J,  (2016) &quot;Neuronal GPCR OCTR-1 regulates innate immunity by controlling protein synthesis in Caenorhabditis elegans.&quot; <i>Sci Rep</i> <b>6</b>:36832; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27833098 27833098]; doi: [https://dx.doi.org/10.1038/srep36832 10.1038/srep36832]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27833098 20].
 +
#Doll S, Urisman A, Oses-Prieto JA, Arnott D, Burlingame AL,  (2016) &quot;Quantitative proteomics reveals fundamental regulatory differences in oncogenic HRAS and IDH1 driven astrocytoma.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27834733 27834733]; doi: [https://dx.doi.org/10.1074/mcp.M116.063883 10.1074/mcp.M116.063883]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27834733 14].
 +
#Vald&eacute;s A, Garc&iacute;a-Ca&ntilde;as V, Artemenko KA, Sim&oacute; C, Bergquist J, Cifuentes A,  (2016) &quot;Nano-liquid chromatography-orbitrap MS -based quantitative proteomics reveals differences between the mechanisms of action of carnosic acid and carnosol in colon cancer cells.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27834734 27834734]; doi: [https://dx.doi.org/10.1074/mcp.M116.061481 10.1074/mcp.M116.061481]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27834734 54].
 +
#Plum S, Steinbach S, Attems J, Keers S, Riederer P, Gerlach M, May C, Marcus K,  (2016) &quot;Proteomic characterization of neuromelanin granules isolated from human substantia nigra by laser-microdissection.&quot; <i>Sci Rep</i> <b>6</b>:37139; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27841354 27841354]; doi: [https://dx.doi.org/10.1038/srep37139 10.1038/srep37139]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27841354 9].
 +
#Eisenberg T, Abdellatif M, Schroeder S, Primessnig U, Stekovic S, Pendl T, Harger A, Schipke J, Zimmermann A, Schmidt A, Tong M, Ruckenstuhl C, Dammbrueck C, Gross AS, Herbst V, Magnes C, Trausinger G, Narath S, Meinitzer A, Hu Z, Kirsch A, Eller K, Carmona-Gutierrez D, B&uuml;ttner S, Pietrocola F, Knittelfelder O, Schrepfer E, Rockenfeller P, Simonini C, Rahn A, Horsch M, Moreth K, Beckers J, Fuchs H, Gailus-Durner V, Neff F, Janik D, Rathkolb B, Rozman J, de Angelis MH, Moustafa T, Haemmerle G, Mayr M, Willeit P, von Frieling-Salewsky M, Pieske B, Scorrano L, Pieber T, Pechlaner R, Willeit J, Sigrist SJ, Linke WA, M&uuml;hlfeld C, Sadoshima J, Dengjel J, Kiechl S, Kroemer G, Sedej S, Madeo F,  (2016) &quot;Cardioprotection and lifespan extension by the natural polyamine spermidine.&quot; <i>Nat Med</i> <b>22</b>(12):1428&ndash;1438; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27841876 27841876]; doi: [https://dx.doi.org/10.1038/nm.4222 10.1038/nm.4222]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27841876 9].
 +
#Villoria MT, Ramos F, Due&ntilde;as E, Faull P, Cutillas PR, Clemente-Blanco A,  (2017) &quot;Stabilization of the metaphase spindle by Cdc14 is required for recombinational DNA repair.&quot; <i>EMBO J</i> <b>36</b>(1):79&ndash;101; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27852625 27852625]; doi: [https://dx.doi.org/10.15252/embj.201593540 10.15252/embj.201593540]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27852625 12].
 +
#Schmitges FW, Radovani E, Najafabadi HS, Barazandeh M, Campitelli LF, Yin Y, Jolma A, Zhong G, Guo H, Kanagalingam T, Dai WF, Taipale J, Emili A, Greenblatt JF, Hughes TR,  (2016) &quot;Multiparameter functional diversity of human C2H2 zinc finger proteins.&quot; <i>Genome Res</i> <b>26</b>(12):1742&ndash;1752; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27852650 27852650]; doi: [https://dx.doi.org/10.1101/gr.209643.116 10.1101/gr.209643.116]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27852650 224].
 +
#Beringer M, Pisano P, Di Carlo V, Blanco E, Chammas P, Viz&aacute;n P, Guti&eacute;rrez A, Aranda S, Payer B, Wierer M, Di Croce L,  (2016) &quot;EPOP Functionally Links Elongin and Polycomb in Pluripotent Stem Cells.&quot; <i>Mol Cell</i> <b>64</b>(4):645&ndash;658; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27863225 27863225]; doi: [https://dx.doi.org/10.1016/j.molcel.2016.10.018 10.1016/j.molcel.2016.10.018]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27863225 12].
 +
#Bassani-Sternberg M, Br&auml;unlein E, Klar R, Engleitner T, Sinitcyn P, Audehm S, Straub M, Weber J, Slotta-Huspenina J, Specht K, Martignoni ME, Werner A, Hein R, H Busch D, Peschel C, Rad R, Cox J, Mann M, Krackhardt AM,  (2016) &quot;Direct identification of clinically relevant neoepitopes presented on native human melanoma tissue by mass spectrometry.&quot; <i>Nat Commun</i> <b>7</b>:13404; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27869121 27869121]; doi: [https://dx.doi.org/10.1038/ncomms13404 10.1038/ncomms13404]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27869121 138].
 +
#Wallace PW, Haernvall K, Ribitsch D, Zitzenbacher S, Schittmayer M, Steinkellner G, Gruber K, Guebitz GM, Birner-Gruenberger R,  (2016) &quot;PpEst is a novel PBAT degrading polyesterase identified by proteomic screening of Pseudomonas pseudoalcaligenes.&quot; <i>Appl Microbiol Biotechnol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27872998 27872998]; doi: [https://dx.doi.org/10.1007/s00253-016-7992-8 10.1007/s00253-016-7992-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27872998 28].
 +
#Muqaku B, Eisninger M, Meier SM, Tahir A, Prokop T, Haferkamp S, Slany A, Reichle A, Gerner C,  (2016) &quot;Multi-omics analysis of serum samples demonstrates reprogramming of organ functions via systemic calcium mobilization and platelet activation in metastatic melanoma.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27879288 27879288]; doi: [https://dx.doi.org/10.1074/mcp.M116.063313 10.1074/mcp.M116.063313]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27879288 18].
 +
#St-Denis N, Gupta GD, Lin ZY, Gonzalez-Badillo B, Veri AO, Knight JD, Rajendran D, Couzens AL, Currie KW, Tkach JM, Cheung SW, Pelletier L, Gingras AC,  (2016) &quot;Phenotypic and Interaction Profiling of the Human Phosphatases Identifies Diverse Mitotic Regulators.&quot; <i>Cell Rep</i> <b>17</b>(9):2488&ndash;2501; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27880917 27880917]; doi: [https://dx.doi.org/10.1016/j.celrep.2016.10.078 10.1016/j.celrep.2016.10.078]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27880917 315].
 +
#Sheppard C, Blombach F, Belsom A, Schulz S, Daviter T, Smollett K, Mahieu E, Erdmann S, Tinnefeld P, Garrett R, Grohmann D, Rappsilber J, Werner F,  (2016) &quot;Repression of RNA polymerase by the archaeo-viral regulator ORF145/RIP.&quot; <i>Nat Commun</i> <b>7</b>:13595; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27882920 27882920]; doi: [https://dx.doi.org/10.1038/ncomms13595 10.1038/ncomms13595]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27882920 9].
 +
#Mossina A, Lukas C, Merl-Pham J, Uhl FE, Mutze K, Schamberger A, Staab-Weijnitz C, Jia J, Yildirim A&Ouml;, K&ouml;nigshoff M, Hauck SM, Eickelberg O, Meiners S,  (2017) &quot;Cigarette smoke alters the secretome of lung epithelial cells.&quot; <i>Proteomics</i> <b>17</b>(1-2):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27891773 27891773]; doi: [https://dx.doi.org/10.1002/pmic.201600243 10.1002/pmic.201600243]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27891773 24].
 +
#Hurwitz SN, Rider MA, Bundy JL, Liu X, Singh RK, Meckes DG Jr,  (2016) &quot;Proteomic profiling of NCI-60 extracellular vesicles uncovers common protein cargo and cancer type-specific biomarkers.&quot; <i>Oncotarget</i> <b>7</b>(52):86999&ndash;87015; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27894104 27894104]; doi: [https://dx.doi.org/10.18632/oncotarget.13569 10.18632/oncotarget.13569]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27894104 898].
 +
#Gonneaud A, Jones C, Turgeon N, L&eacute;vesque D, Asselin C, Boudreau F, Boisvert FM,  (2016) &quot;A SILAC-Based Method for Quantitative Proteomic Analysis of Intestinal Organoids.&quot; <i>Sci Rep</i> <b>6</b>:38195; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27901089 27901089]; doi: [https://dx.doi.org/10.1038/srep38195 10.1038/srep38195]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27901089 38].
 +
#Song L, Wang F, Dong Z, Hua X, Xia Q,  (2017) &quot;Label-free quantitative phosphoproteomic profiling of cellular response induced by an insect cytokine paralytic peptide.&quot; <i>J Proteomics</i> <b>154</b>:49&ndash;58; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27903465 27903465]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.11.018 10.1016/j.jprot.2016.11.018]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27903465 6].
 +
#Sundberg M, Strage EM, Bergquist J, Holst BS, Ramstr&ouml;m M,  (2016) &quot;Quantitative and Selective Analysis of Feline Growth Related Proteins Using Parallel Reaction Monitoring High Resolution Mass Spectrometry.&quot; <i>PLoS One</i> <b>11</b>(12):e0167138; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27907059 27907059]; doi: [https://dx.doi.org/10.1371/journal.pone.0167138 10.1371/journal.pone.0167138]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27907059 3].
 +
#Tatham MH, Cole C, Scullion P, Wilkie R, Westwood NJ, Stark LA, Hay RT,  (2016) &quot;A proteomic approach to analyse the aspirin-mediated lysine acetylome.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27913581 27913581]; doi: [https://dx.doi.org/10.1074/mcp.O116.065219 10.1074/mcp.O116.065219]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27913581 40].
 +
#Beaumont V, Zhong S, Lin H, Xu W, Bradaia A, Steidl E, Gleyzes M, Wadel K, Buisson B, Padovan-Neto FE, Chakroborty S, Ward KM, Harms JF, Beltran J, Kwan M, Ghavami A, H&auml;ggkvist J, T&oacute;th M, Halldin C, Varrone A, Schaab C, Dybowski JN, Elschenbroich S, Lehtim&auml;ki K, Heikkinen T, Park L, Rosinski J, Mrzljak L, Lavery D, West AR, Schmidt CJ, Zaleska MM, Munoz-Sanjuan I,  (2016) &quot;Phosphodiesterase 10A Inhibition Improves Cortico-Basal Ganglia Function in Huntington&#39;s Disease Models.&quot; <i>Neuron</i> <b>92</b>(6):1220&ndash;1237; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27916455 27916455]; doi: [https://dx.doi.org/10.1016/j.neuron.2016.10.064 10.1016/j.neuron.2016.10.064]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27916455 377].
 +
#Tiberti N, Latham SL, Bush S, Cohen A, Opoka RO, John CC, Juillard A, Grau GE, Combes V,  (2016) &quot;Exploring experimental cerebral malaria pathogenesis through the characterisation of host-derived plasma microparticle protein content.&quot; <i>Sci Rep</i> <b>6</b>:37871; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27917875 27917875]; doi: [https://dx.doi.org/10.1038/srep37871 10.1038/srep37871]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27917875 4].
 +
#Tedeschi G, Albani E, Borroni EM, Parini V, Brucculeri AM, Maffioli E, Negri A, Nonnis S, Maccarrone M, Levi-Setti PE,  (2016) &quot;Proteomic profile of maternal-aged blastocoel fluid suggests a novel role for ubiquitin system in blastocyst quality.&quot; <i>J Assist Reprod Genet</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27924460 27924460]; doi: [https://dx.doi.org/10.1007/s10815-016-0842-x 10.1007/s10815-016-0842-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27924460 10].
 +
#Sharma R, Fedorenko I, Spence PT, Sondak VK, Smalley KS, Koomen JM,  (2016) &quot;Activity-Based Protein Profiling Shows Heterogeneous Signaling Adaptations to BRAF Inhibition.&quot; <i>J Proteome Res</i> <b>15</b>(12):4476&ndash;4489; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27934295 27934295]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00613 10.1021/acs.jproteome.6b00613]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27934295 18].
 +
#Zhao H, Konzer A, Mi J, Chen M, Pettersson U, Lind SB,  (2016) &quot;Posttranscriptional Regulation in Adenovirus Infected Cells.&quot; <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27959563 27959563]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00834 10.1021/acs.jproteome.6b00834]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27959563 6].
 +
#Seidel G, Meierhofer D, &#x15E;en NE, Guenther A, Krobitsch S, Auburger G,  (2016) &quot;Quantitative Global Proteomics of Yeast PBP1 Deletion Mutants and Their Stress Responses Identifies Glucose Metabolism, Mitochondrial, and Stress Granule Changes.&quot; <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27966978 27966978]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00647 10.1021/acs.jproteome.6b00647]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27966978 27].
 +
#Dauden MI, Kosinski J, Kolaj-Robin O, Desfosses A, Ori A, Faux C, Hoffmann NA, Onuma OF, Breunig KD, Beck M, Sachse C, S&eacute;raphin B, Glatt S, M&uuml;ller CW,  (2016) &quot;Architecture of the yeast Elongator complex.&quot; <i>EMBO Rep</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27974378 27974378]; doi: [https://dx.doi.org/10.15252/embr.201643353 10.15252/embr.201643353]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27974378 44].
 +
#Herfs M, Longuesp&eacute;e R, Quick CM, Roncarati P, Suarez-Carmona M, Hubert P, Lebeau A, Bruyere D, Mazzucchelli G, Smargiasso N, Baiwir D, Lai K, Dunn A, Obregon F, Yang EJ, De Pauw E, Crum CP, Delvenne P,  (2016) &quot;Proteomic signatures reveal a dualistic and clinically relevant classification of anal canal carcinoma.&quot; <i>J Pathol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27976366 27976366]; doi: [https://dx.doi.org/10.1002/path.4858 10.1002/path.4858]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27976366 60].
 +
#Zhang S, Weng T, Cheruba E, Guo T, Chan H, Sze SK, Koh CG,  (2016) &quot;Phosphatase POPX2 Exhibits Dual Regulatory Functions in Cancer Metastasis.&quot; <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27976581 27976581]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00748 10.1021/acs.jproteome.6b00748]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27976581 60].
 +
#Schunter AJ, Yue X, Hummon AB,  (2016) &quot;Phosphoproteomics of colon cancer metastasis: comparative mass spectrometric analysis of the isogenic primary and metastatic cell lines SW480 and SW620.&quot; <i>Anal Bioanal Chem</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27987026 27987026]; doi: [https://dx.doi.org/10.1007/s00216-016-0125-5 10.1007/s00216-016-0125-5]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27987026 35].
 +
#Choi M, Eren-Dogu ZF, Colangelo CM, Cottrell JS, Hoopmann MR, Kapp EA, Kim S, Lam H, Neubert TA, Palmblad M, Phinney BS, Weintraub ST, MacLean B, Vitek O,  (2016) &quot;ABRF Proteome Informatics Research Group (iPRG) 2015 Study: Detection of differentially abundant proteins in label-free quantitative LC-MS/MS experiments.&quot; <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27990823 27990823]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00881 10.1021/acs.jproteome.6b00881]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27990823 12].
 +
#Bertile F, Fouillen L, Wasselin T, Maes P, Le Maho Y, Van Dorsselaer A, Raclot T,  (2016) &quot;The Safety Limits Of An Extended Fast: Lessons from a Non-Model Organism.&quot; <i>Sci Rep</i> <b>6</b>:39008; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27991520 27991520]; doi: [https://dx.doi.org/10.1038/srep39008 10.1038/srep39008]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27991520 194].
 +
#Evans IM, Kennedy SA, Paliashvili K, Santra T, Yamaji M, Lovering RC, Britton G, Frankel P, Kolch W, Zachary IC,  (2016) &quot;VEGF promotes assembly of the p130Cas interactome to drive endothelial chemotactic signalling and angiogenesis.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28007913 28007913]; doi: [https://dx.doi.org/10.1074/mcp.M116.064428 10.1074/mcp.M116.064428]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28007913 89].
 +
#Geyer PE, Wewer Albrechtsen NJ, Tyanova S, Grassl N, Iepsen EW, Lundgren J, Madsbad S, Holst JJ, Torekov SS, Mann M,  (2016) &quot;Proteomics reveals the effects of sustained weight loss on the human plasma proteome.&quot; <i>Mol Syst Biol</i> <b>12</b>(12):901; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28007936 28007936]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28007936 1145].
 +
#Reimann L, Wiese H, Leber Y, Schw&auml;ble AN, Fricke AL, Rohland A, Knapp B, Peikert CD, Drepper F, van der Ven PF, Radziwill G, F&uuml;rst DO, Warscheid B,  (2016) &quot;Myofibrillar Z-discs are a protein phosphorylation hot spot with PKC &alpha; modulating protein dynamics.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28028127 28028127]; doi: [https://dx.doi.org/10.1074/mcp.M116.065425 10.1074/mcp.M116.065425]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28028127 278].
 +
#Rougemont B, Bontemps Gallo S, Ayciriex S, Carriere R, Hondermarck H, Lacroix JM, Le Blanc JC, Lemoine J,  (2016) &quot;Scout-MRM: multiplexed targeted mass spectrometry-based assay without retention time scheduling exemplified by Dickeya dadantii proteomic analysis during plant infection.&quot; <i>Anal Chem</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28029036 28029036]; doi: [https://dx.doi.org/10.1021/acs.analchem.6b03201 10.1021/acs.analchem.6b03201]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28029036 8].
 +
#Hickox AE, Wong AC, Pak K, Strojny C, Ramirez M, Yates JR Rd, Ryan AF, Savas JN,  (2016) &quot;Global Analysis of Protein Expression of Inner Ear Hair Cells.&quot; <i>J Neurosci</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28039372 28039372]; doi: [https://dx.doi.org/10.1523/JNEUROSCI.2267-16.2016 10.1523/JNEUROSCI.2267-16.2016]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28039372 71].
 +
#Hansson KT, Skillb&auml;ck T, Pernevik E, Kern S, Portelius E, H&ouml;glund K, Brinkmalm G, Holm&eacute;n-Larsson J, Blennow K, Zetterberg H, Gobom J,  (2017) &quot;Expanding the cerebrospinal fluid endopeptidome.&quot; <i>Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28044435 28044435]; doi: [https://dx.doi.org/10.1002/pmic.201600384 10.1002/pmic.201600384]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28044435 36].
 +
#Chen J, Zheng Q, Hammers CM, Ellebrecht CT, Mukherjee EM, Tang HY, Lin C, Yuan H, Pan M, Langenhan J, Komorowski L, Siegel DL, Payne AS, Stanley JR,  (2017) &quot;Proteomic Analysis of Pemphigus Autoantibodies Indicates a Larger, More Diverse, and More Dynamic Repertoire than Determined by B Cell Genetics.&quot; <i>Cell Rep</i> <b>18</b>(1):237&ndash;247; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28052253 28052253]; doi: [https://dx.doi.org/10.1016/j.celrep.2016.12.013 10.1016/j.celrep.2016.12.013]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28052253 128].
 +
#Cristobal A, van den Toorn HW, van de Wetering M, Clevers H, Heck AJ, Mohammed S,  (2017) &quot;Personalized Proteome Profiles of Healthy and Tumor Human Colon Organoids Reveal Both Individual Diversity and Basic Features of Colorectal Cancer.&quot; <i>Cell Rep</i> <b>18</b>(1):263&ndash;274; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28052255 28052255]; doi: [https://dx.doi.org/10.1016/j.celrep.2016.12.016 10.1016/j.celrep.2016.12.016]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28052255 175].
 +
#Degroote RL, Uhl PB, Amann B, Krackhardt AM, Ueffing M, Hauck SM, Deeg CA,  (2017) &quot;Formin like 1 expression is increased on CD4+ T lymphocytes in spontaneous autoimmune uveitis.&quot; <i>J Proteomics</i> <b>154</b>:102&ndash;108; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28057602 28057602]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.12.015 10.1016/j.jprot.2016.12.015]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28057602 6].
 +
#Braakman RB, Stingl C, Tilanus-Linthorst MM, Deurzen CH, Timmermans MA, Smid M, Foekens JA, Luider TM, Martens JW, Umar A,  (2017) &quot;Proteomic characterization of microdissected breast tissue environment provides a protein-level overview of malignant transformation.&quot; <i>Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28058811 28058811]; doi: [https://dx.doi.org/10.1002/pmic.201600213 10.1002/pmic.201600213]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28058811 70].
 +
#Beck F, Geiger J, Gambaryan S, Solari FA, Dell&#39;Aica M, Loroch S, Mattheij NJ, Mindukshev I, P&ouml;tz O, Jurk K, Burkhart JM, Fufezan C, Heemskerk JW, Walter U, Zahedi RP, Sickmann A,  (2017) &quot;Temporal quantitative phosphoproteomics of ADP stimulation reveals novel central nodes in platelet activation and inhibition.&quot; <i>Blood</i> <b>129</b>(2):e1&ndash;e12; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28060719 28060719]; doi: [https://dx.doi.org/10.1182/blood-2016-05-714048 10.1182/blood-2016-05-714048]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28060719 12].
 +
#Clotet S, Soler MJ, Riera M, Pascual J, Fang F, Zhou J, Batruch I, Vasiliou SK, Dimitromanolakis A, Barrios C, Diamandis E, Scholey J, Konvalinka A,  (2017) &quot;SILAC-Based Proteomics of Primary Human Kidney Cells Reveals a Novel Link between Male Sex Hormones and Impaired Energy Metabolism in Diabetic Kidney Disease.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28062795 28062795]; doi: [https://dx.doi.org/10.1074/mcp.M116.061903 10.1074/mcp.M116.061903]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28062795 11].
 +
#Johnston HE, Carter MJ, Cox KL, Dunscombe M, Manousopoulou A, Townsend PA, Garbis SD, Cragg MS,  (2017) &quot;Integrated Cellular and Plasma Proteomics of Contrasting B-cell Cancers Reveals Common, Unique and Systemic Signatures.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28062796 28062796]; doi: [https://dx.doi.org/10.1074/mcp.M116.063511 10.1074/mcp.M116.063511]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28062796 166].
 +
#Diaz-Vera J, Palmer S, Hernandez-Fernaud JR, Dornier E, Mitchell LE, Macpherson I, Edwards J, Zanivan S, Norman JC,  (2017) &quot;A proteomic approach to identify endosomal cargoes controlling cancer invasiveness.&quot; <i>J Cell Sci</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28062852 28062852]; doi: [https://dx.doi.org/10.1242/jcs.190835 10.1242/jcs.190835]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28062852 106].
 +
#Pietzner M, Engelmann B, Kacprowski T, Golchert J, Dirk AL, Hammer E, Iwen KA, Nauck M, Wallaschofski H, F&uuml;hrer D, M&uuml;nte TF, Friedrich N, V&ouml;lker U, Homuth G, Brabant G,  (2017) &quot;Plasma proteome and metabolome characterization of an experimental human thyrotoxicosis model.&quot; <i>BMC Med</i> <b>15</b>(1):6; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28065164 28065164]; doi: [https://dx.doi.org/10.1186/s12916-016-0770-8 10.1186/s12916-016-0770-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28065164 80].
 +
#Kreutz D, Bileck A, Plessl K, Wolrab D, Groessl M, Keppler BK, Meier SM, Gerner C,  (2016) &quot;Response Profiling Using Shotgun Proteomics Enables Global Metallodrug Mechanisms of Action To Be Established.&quot; <i>Chemistry</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28071820 28071820]; doi: [https://dx.doi.org/10.1002/chem.201604516 10.1002/chem.201604516]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28071820 6].
 +
#Xing F, Luan Y, Cai J, Wu S, Mai J, Gu J, Zhang H, Li K, Lin Y, Xiao X, Liang J, Li Y, Chen W, Tan Y, Sheng L, Lu B, Lu W, Gao M, Qiu P, Su X, Yin W, Hu J, Chen Z, Sai K, Wang J, Chen F, Chen Y, Zhu S, Liu D, Cheng S, Xie Z, Zhu W, Yan G,  (2017) &quot;The Anti-Warburg Effect Elicited by the cAMP-PGC1&alpha; Pathway Drives Differentiation of Glioblastoma Cells into Astrocytes.&quot; <i>Cell Rep</i> <b>18</b>(2):468&ndash;481; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28076790 28076790]; doi: [https://dx.doi.org/10.1016/j.celrep.2016.12.037 10.1016/j.celrep.2016.12.037]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28076790 60].
 +
#Loroch S, Trabold K, Gambaryan S, Rei&szlig; C, Schwierczek K, Fleming I, Sickmann A, Behnisch W, Zieger B, Zahedi RP, Walter U, Jurk K,  (2017) &quot;Alterations of the platelet proteome in type I Glanzmann thrombasthenia caused by different homozygous delG frameshift mutations in ITGA2B.&quot; <i>Thromb Haemost</i> <b>117</b>(3):556&ndash;569; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28078347 28078347]; doi: [https://dx.doi.org/10.1160/TH16-07-0515 10.1160/TH16-07-0515]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28078347 20].
 +
#Scott NE, Rogers LD, Prudova A, Brown NF, Fortelny N, Overall CM, Foster LJ,  (2017) &quot;Interactome disassembly during apoptosis occurs independent of caspase cleavage.&quot; <i>Mol Syst Biol</i> <b>13</b>(1):906; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28082348 28082348]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28082348 521].
 +
#Emmott E, Sorgeloos F, Caddy SL, Vashist S, Sosnovtsev S, Lloyd R, Heesom K, Locker N, Goodfellow I,  (2017) &quot;Norovirus-mediated modification of the translational landscape via virus and host-induced cleavage of translation initiation factors.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28087593 28087593]; doi: [https://dx.doi.org/10.1074/mcp.M116.062448 10.1074/mcp.M116.062448]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28087593 3].
 +
#Niklasson M, Maddalo G, Sramkova Z, Mutlu E, Wee S, Sekyrova P, Schmidt L, Fritz N, Dehnisch I, Kyriatzis G, Krafcikova M, Carson BB, Feenstra J, Marinescu VD, Segerman A, Haraldsson M, Gustavsson AL, Hammarstr&ouml;m LG, Jenmalm-Jensen A, Uhrbom L, Altelaar AF, Linnarsson S, Uhl&eacute;n P, Trantirek L, Vincent CT, Nelander S, Enger P&Oslash;, And&auml;ng M,  (2017) &quot;Membrane-depolarizing channel blockers induce selective glioma cell death by impairing nutrient transport and unfolded protein/amino acid responses.&quot; <i>Cancer Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28087597 28087597]; doi: [https://dx.doi.org/10.1158/0008-5472.CAN-16-2274 10.1158/0008-5472.CAN-16-2274]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28087597 6].
 +
#Gao Y, Chen Y, Zhan S, Zhang W, Xiong F, Ge W,  (2017) &quot;Comprehensive proteome analysis of lysosomes reveals the diverse function of macrophages in immune responses.&quot; <i>Oncotarget</i> <b>8</b>(5):7420&ndash;7440; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28088779 28088779]; doi: [https://dx.doi.org/10.18632/oncotarget.14558 10.18632/oncotarget.14558]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28088779 2].
 +
#Riesner K, Shi Y, Jacobi A, Kraeter M, Kalupa M, McGearey A, Mertlitz S, Cordes S, Schrezenmeier JF, Mengwasser J, Westphal S, Perez-Hernandez D, Schmitt C, Dittmar G, Guck J, Penack O,  (2017) &quot;Initiation of acute graft-versus-host disease by angiogenesis.&quot; <i>Blood</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28096092 28096092]; doi: [https://dx.doi.org/10.1182/blood-2016-08-736314 10.1182/blood-2016-08-736314]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28096092 1].
 +
#Princz LN, Wild P, Bittmann J, Aguado FJ, Blanco MG, Matos J, Pfander B,  (2017) &quot;Dbf4-dependent kinase and the Rtt107 scaffold promote Mus81-Mms4 resolvase activation during mitosis.&quot; <i>EMBO J</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28096179 28096179]; doi: [https://dx.doi.org/10.15252/embj.201694831 10.15252/embj.201694831]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28096179 130].
 +
#Chymkowitch P, Ngu&eacute;a P A, Aanes H, Robertson J, Klungland A, Enserink JM,  (2017) &quot;TORC1-dependent sumoylation of Rpc82 promotes RNA polymerase III assembly and activity.&quot; <i>Proc Natl Acad Sci U S A</i> <b>114</b>(5):1039&ndash;1044; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28096404 28096404]; doi: [https://dx.doi.org/10.1073/pnas.1615093114 10.1073/pnas.1615093114]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28096404 21].
 +
#Reckel S, Hamelin R, Georgeon S, Armand F, Jolliet Q, Chiappe D, Moniatte M, Hantschel O,  (2017) &quot;Differential signaling networks of Bcr-Abl p210 and p190 kinases in leukemia cells defined by functional proteomics.&quot; <i>Leukemia</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28111465 28111465]; doi: [https://dx.doi.org/10.1038/leu.2017.36 10.1038/leu.2017.36]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28111465 10].
 +
#Hendriks IA, Lyon D, Young C, Jensen LJ, Vertegaal AC, Nielsen ML,  (2017) &quot;Site-specific mapping of the human SUMO proteome reveals co-modification with phosphorylation.&quot; <i>Nat Struct Mol Biol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28112733 28112733]; doi: [https://dx.doi.org/10.1038/nsmb.3366 10.1038/nsmb.3366]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28112733 311].
 +
#Badalato N, Guillot A, Sabarly V, Dubois M, Pourette N, Pontoire B, Robert P, Bridier A, Monnet V, Sousa DZ, Durand S, Maz&eacute;as L, Bul&eacute;on A, Bouchez T, Mortha G, Bize A,  (2017) &quot;Whole Proteome Analyses on Ruminiclostridium cellulolyticum Show a Modulation of the Cellulolysis Machinery in Response to Cellulosic Materials with Subtle Differences in Chemical and Structural Properties.&quot; <i>PLoS One</i> <b>12</b>(1):e0170524; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28114419 28114419]; doi: [https://dx.doi.org/10.1371/journal.pone.0170524 10.1371/journal.pone.0170524]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28114419 24].
 +
#Glisovic-Aplenc T, Gill S, Spruce LA, Smith IR, Fazelinia H, Shestova O, Ding H, Tasian SK, Aplenc R, Seeholzer SH,  (2017) &quot;Improved plasma membrane proteome coverage with a label-free non-affinity-purified workflow.&quot; <i>Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28116781 28116781]; doi: [https://dx.doi.org/10.1002/pmic.201600344 10.1002/pmic.201600344]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28116781 41].
 +
#Baker MS, Ahn SB, Mohamedali A, Islam MT, Cantor D, Verhaert PD, Fanayan S, Sharma S, Nice EC, Connor M, Ranganathan S,  (2017) &quot;Accelerating the search for the missing proteins in the human proteome.&quot; <i>Nat Commun</i> <b>8</b>:14271; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28117396 28117396]; doi: [https://dx.doi.org/10.1038/ncomms14271 10.1038/ncomms14271]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28117396 12].
 +
#Kulak NA, Geyer PE, Mann M,  (2017) &quot;Loss-less nano-fractionator for high sensitivity, high coverage proteomics.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28126900 28126900]; doi: [https://dx.doi.org/10.1074/mcp.O116.065136 10.1074/mcp.O116.065136]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28126900 60].
 +
#Yu Y, Kwon K, Tsitrin T, Bekele S, Sikorski P, Nelson KE, Pieper R,  (2017) &quot;Characterization of Early-Phase Neutrophil Extracellular Traps in Urinary Tract Infections.&quot; <i>PLoS Pathog</i> <b>13</b>(1):e1006151; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28129394 28129394]; doi: [https://dx.doi.org/10.1371/journal.ppat.1006151 10.1371/journal.ppat.1006151]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28129394 72].
 +
#Tuveng TR, Hagen LH, Mekasha S, Frank J, Arntzen M&Oslash;, Vaaje-Kolstad G, Eijsink VGH,  (2017) &quot;Genomic, proteomic and biochemical analysis of the chitinolytic machinery of Serratia marcescens BJL200.&quot; <i>Biochim Biophys Acta</i> <b>1865</b>(4):414&ndash;421; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28130068 28130068]; doi: [https://dx.doi.org/10.1016/j.bbapap.2017.01.007 10.1016/j.bbapap.2017.01.007]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28130068 54].
 +
#Lorenz C, Lesimple P, Bukowiecki R, Zink A, Inak G, Mlody B, Singh M, Semtner M, Mah N, Aur&eacute; K, Leong M, Zabiegalov O, Lyras EM, Pfiffer V, Fauler B, Eichhorst J, Wiesner B, Huebner N, Priller J, Mielke T, Meierhofer D, Izsv&aacute;k Z, Meier JC, Bouillaud F, Adjaye J, Schuelke M, Wanker EE, Lomb&egrave;s A, Prigione A,  (2017) &quot;Human iPSC-Derived Neural Progenitors Are an Effective Drug Discovery Model for Neurological mtDNA Disorders.&quot; <i>Cell Stem Cell</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28132834 28132834]; doi: [https://dx.doi.org/10.1016/j.stem.2016.12.013 10.1016/j.stem.2016.12.013]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28132834 14].
 +
#Godfrey M, Touati SA, Kataria M, Jones A, Snijders AP, Uhlmann F,  (2017) &quot;PP2A<sup>Cdc55</sup> Phosphatase Imposes Ordered Cell-Cycle Phosphorylation by Opposing Threonine Phosphorylation.&quot; <i>Mol Cell</i> <b>65</b>(3):393&ndash;402.e3; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28132839 28132839]; doi: [https://dx.doi.org/10.1016/j.molcel.2016.12.018 10.1016/j.molcel.2016.12.018]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28132839 120].
 +
#Liu X, Zhao B, Sun L, Bhuripanyo K, Wang Y, Bi Y, Davuluri RV, Duong DM, Nanavati D, Yin J, Kiyokawa H,  (2017) &quot;Orthogonal ubiquitin transfer identifies ubiquitination substrates under differential control by the two ubiquitin activating enzymes.&quot; <i>Nat Commun</i> <b>8</b>:14286; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28134249 28134249]; doi: [https://dx.doi.org/10.1038/ncomms14286 10.1038/ncomms14286]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28134249 5].
 +
#Zolg DP, Wilhelm M, Schnatbaum K, Zerweck J, Knaute T, Delanghe B, Bailey DJ, Gessulat S, Ehrlich HC, Weininger M, Yu P, Schlegl J, Kramer K, Schmidt T, Kusebauch U, Deutsch EW, Aebersold R, Moritz RL, Wenschuh H, Moehring T, Aiche S, Huhmer A, Reimer U, Kuster B,  (2017) &quot;Building ProteomeTools based on a complete synthetic human proteome.&quot; <i>Nat Methods</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28135259 28135259]; doi: [https://dx.doi.org/10.1038/nmeth.4153 10.1038/nmeth.4153]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28135259 1095].
 +
#Zhang F, Xiao Y, Wang Y,  (2017) &quot;SILAC-Based Quantitative Proteomic Analysis Unveils Arsenite-Induced Perturbation of Multiple Pathways in Human Skin Fibroblast Cells.&quot; <i>Chem Res Toxicol</i> <b>30</b>(4):1006&ndash;1014; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28140569 28140569]; doi: [https://dx.doi.org/10.1021/acs.chemrestox.6b00416 10.1021/acs.chemrestox.6b00416]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28140569 66].
 +
#Abe Y, Nagano M, Tada A, Adachi J, Tomonaga T,  (2017) &quot;Deep Phosphotyrosine Proteomics by Optimization of Phosphotyrosine Enrichment and MS/MS Parameters.&quot; <i>J Proteome Res</i> <b>16</b>(2):1077&ndash;1086; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28152594 28152594]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00576 10.1021/acs.jproteome.6b00576]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28152594 41].
 +
#Jung SY, Choi JM, Rousseaux MW, Malovannaya A, Kim JJ, Kutzera J, Wang Y, Huang Y, Zhu W, Maity S, Zoghbi HY, Qin J,  (2017) &quot;An anatomically resolved mouse brain proteome reveals Parkinson disease-relevant pathways.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28153913 28153913]; doi: [https://dx.doi.org/10.1074/mcp.M116.061440 10.1074/mcp.M116.061440]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28153913 610].
 +
#Diering GH, Nirujogi RS, Roth RH, Worley PF, Pandey A, Huganir RL,  (2017) &quot;Homer1a drives homeostatic scaling-down of excitatory synapses during sleep.&quot; <i>Science</i> <b>355</b>(6324):511&ndash;515; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28154077 28154077]; doi: [https://dx.doi.org/10.1126/science.aai8355 10.1126/science.aai8355]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28154077 25].
 +
#Nuzzo D, Inguglia L, Walters J, Picone P, Di Carlo M,  (2017) &quot;A Shotgun Proteomics Approach Reveals a New Toxic Role For Alzheimer&#39;s Disease A&beta; Peptide: Spliceosome Impairment.&quot; <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28157316 28157316]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00925 10.1021/acs.jproteome.6b00925]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28157316 8].
 +
#Park YJ, Koh J, Kwon JT, Park YS, Yang L, Cha S,  (2017) &quot;Uncovering stem cell differentiation factors for salivary gland regeneration by quantitative analysis of differential proteomes.&quot; <i>PLoS One</i> <b>12</b>(2):e0169677; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28158262 28158262]; doi: [https://dx.doi.org/10.1371/journal.pone.0169677 10.1371/journal.pone.0169677]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28158262 2].
 +
#Davis S, Charles PD, He L, Mowlds P, Kessler BM, Fischer R,  (2017) &quot;Expanding proteome coverage with CHarge Ordered Parallel Ion aNalysis (CHOPIN) combined with broad specificity proteolysis.&quot; <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28164708 28164708]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00915 10.1021/acs.jproteome.6b00915]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28164708 7].
 +
#Petrovic V, Olaisen C, Sharma A, Nepal A, Bugge S, Sundby E, Hoff BH, Slupphaug G, Otterlei M,  (2017) &quot;On-column trypsinization allows for re-use of matrix in modified multiplexed inhibitor beads assay.&quot; <i>Anal Biochem</i> <b>523</b>:10&ndash;16; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28167071 28167071]; doi: [https://dx.doi.org/10.1016/j.ab.2017.01.027 10.1016/j.ab.2017.01.027]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28167071 3].
 +
#Worthington J, Spain G, Timms JF,  (2017) &quot;Effects of ErbB2 Overexpression on the Proteome and ErbB Ligand-specific Phosphosignaling in Mammary Luminal Epithelial Cells.&quot; <i>Mol Cell Proteomics</i> <b>16</b>(4):608&ndash;621; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28174229 28174229]; doi: [https://dx.doi.org/10.1074/mcp.M116.061267 10.1074/mcp.M116.061267]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28174229 190].
 +
#Li X, Gao M, Choi JM, Kim BJ, Zhou MT, Chen Z, Jain AN, Jung SY, Yuan J, Wang W, Wang Y, Chen J,  (2017) &quot;CRISPR/Cas9-Coupled Affinity Purification/Mass Spectrometry Analysis Revealed a Novel Role of Neurofibromin in mTOR Signaling.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28174230 28174230]; doi: [https://dx.doi.org/10.1074/mcp.M116.064543 10.1074/mcp.M116.064543]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28174230 44].
 +
#Kalkan T, Olova N, Roode M, Mulas C, Lee HJ, Nett I, Marks H, Walker R, Stunnenberg HG, Lilley KS, Nichols J, Reik W, Bertone P, Smith A,  (2017) &quot;Tracking the embryonic stem cell transition from ground state pluripotency.&quot; <i>Development</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28174249 28174249]; doi: [https://dx.doi.org/10.1242/dev.142711 10.1242/dev.142711]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28174249 24].
 +
#Cant&ugrave; C, Pagella P, Shajiei TD, Zimmerli D, Valenta T, Hausmann G, Basler K, Mitsiadis TA,  (2017) &quot;A cytoplasmic role of Wnt/&beta;-catenin transcriptional cofactors Bcl9, Bcl9l, and Pygopus in tooth enamel formation.&quot; <i>Sci Signal</i> <b>10</b>(465):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28174279 28174279]; doi: [https://dx.doi.org/10.1126/scisignal.aah4598 10.1126/scisignal.aah4598]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28174279 3].
 +
#Massafra V, Milona A, Vos HR, Burgering BM, van Mil SW,  (2017) &quot;Quantitative liver proteomics identifies FGF19 targets that couple metabolism and proliferation.&quot; <i>PLoS One</i> <b>12</b>(2):e0171185; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28178326 28178326]; doi: [https://dx.doi.org/10.1371/journal.pone.0171185 10.1371/journal.pone.0171185]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28178326 9].
 +
#Kulej K, Avgousti DC, Sidoli S, Herrmann C, Della Fera AN, Kim ET, Garcia BA, Weitzman MD,  (2017) &quot;Time-resolved global and chromatin proteomics during herpes simplex virus (HSV-1) infection.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28179408 28179408]; doi: [https://dx.doi.org/10.1074/mcp.M116.065987 10.1074/mcp.M116.065987]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28179408 63].
 +
#Schm Oumllders J, Manske C, Otto A, Hoffmann C, Steiner B, Welin A, Becher DO, Hilbi H,  (2017) &quot;Comparative proteomics of purified pathogen vacuoles correlates intracellular replication of <i>Legionella pneumophila</i> with the small GTPase Rap1.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28183814 28183814]; doi: [https://dx.doi.org/10.1074/mcp.M116.063453 10.1074/mcp.M116.063453]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28183814 118].
 +
#Greseth MD, Carter DM, Terhune SS, Traktman P,  (2017) &quot;Proteomic screen for cellular targets of the vaccinia virus F10 protein kinase reveals that phosphorylation of mDia regulates stress fiber formation.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28183815 28183815]; doi: [https://dx.doi.org/10.1074/mcp.M116.065003 10.1074/mcp.M116.065003]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28183815 9].
 +
#Fielding CA, Weekes MP, Nobre LV, Ruckova E, Wilkie GS, Paulo JA, Chang C, Su&aacute;rez NM, Davies JA, Antrobus R, Stanton RJ, Aicheler RJ, Nichols H, Vojtesek B, Trowsdale J, Davison AJ, Gygi SP, Tomasec P, Lehner PJ, Wilkinson GW,  (2017) &quot;Control of immune ligands by members of a cytomegalovirus gene expansion suppresses natural killer cell activation.&quot; <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28186488 28186488]; doi: [https://dx.doi.org/10.7554/eLife.22206 10.7554/eLife.22206]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28186488 9].
 +
#Barnea E, Melamed Kadosh D, Haimovich Y, Satumtira N, Dorris ML, Nguyen MT, Hammer RE, Tran TM, Colbert RA, Taurog JD, Admon A,  (2017) &quot;The HLA-B27 peptidome in vivo in spondyloarthritis-susceptible HLA-B27 transgenic rats and the effect of ERAP1 deletion.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28188227 28188227]; doi: [https://dx.doi.org/10.1074/mcp.M116.066241 10.1074/mcp.M116.066241]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28188227 49].
 +
#Howie D, Cobbold SP, Adams E, Ten Bokum A, Necula AS, Zhang W, Huang H, Roberts DJ, Thomas B, Hester SS, Vaux DJ, Betz AG, Waldmann H,  (2017) &quot;Foxp3 drives oxidative phosphorylation and protection from lipotoxicity.&quot; <i>JCI Insight</i> <b>2</b>(3):e89160; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28194435 28194435]; doi: [https://dx.doi.org/10.1172/jci.insight.89160 10.1172/jci.insight.89160]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28194435 7].
 +
#Liu NQ, Ter Huurne M, Nguyen LN, Peng T, Wang SY, Studd JB, Joshi O, Ongen H, Bramsen JB, Yan J, Andersen CL, Taipale J, Dermitzakis ET, Houlston RS, Hubner NC, Stunnenberg HG,  (2017) &quot;The non-coding variant rs1800734 enhances DCLK3 expression through long-range interaction and promotes colorectal cancer progression.&quot; <i>Nat Commun</i> <b>8</b>:14418; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28195176 28195176]; doi: [https://dx.doi.org/10.1038/ncomms14418 10.1038/ncomms14418]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28195176 250].
 +
#Stewart PA, Fang B, Slebos RJ, Zhang G, Borne AL, Fellows K, Teer JK, Chen YA, Welsh E, Eschrich SA, Haura EB, Koomen JM,  (2017) &quot;Relative protein quantification and accessible biology in lung tumor proteomes from four LC-MS/MS discovery platforms.&quot; <i>Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28195392 28195392]; doi: [https://dx.doi.org/10.1002/pmic.201600300 10.1002/pmic.201600300]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28195392 36].
 +
#Lorey MB, Rossi K, Eklund KK, Nyman TA, Matikainen S,  (2017) &quot;Global characterization of protein secretion from human macrophages following non-canonical caspase-4/5 inflammasome activation.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28196878 28196878]; doi: [https://dx.doi.org/10.1074/mcp.M116.064840 10.1074/mcp.M116.064840]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28196878 60].
 +
#Suh MJ, Keasey SL, Brueggemann EE, Ulrich RG,  (2017) &quot;Antibiotic-dependent perturbations of extended spectrum beta-lactamase producing Klebsiella pneumoniae proteome.&quot; <i>Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28198105 28198105]; doi: [https://dx.doi.org/10.1002/pmic.201700003 10.1002/pmic.201700003]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28198105 24].
 +
#Potu H, Peterson LF, Kandarpa M, Pal A, Sun H, Durham A, Harms PW, Hollenhorst PC, Eskiocak U, Talpaz M, Donato NJ,  (2017) &quot;Usp9x regulates Ets-1 ubiquitination and stability to control NRAS expression and tumorigenicity in melanoma.&quot; <i>Nat Commun</i> <b>8</b>:14449; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28198367 28198367]; doi: [https://dx.doi.org/10.1038/ncomms14449 10.1038/ncomms14449]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28198367 6].
 +
#Tahir A, Bileck A, Muqaku B, Niederstaetter L, Kreutz D, Mayer RL, Wolrab D, Meier SM, Slany A, Gerner C,  (2017) &quot;Combined Proteome and Eicosanoid Profiling Approach for Revealing Implications of Human Fibroblasts in Chronic Inflammation.&quot; <i>Anal Chem</i> <b>89</b>(3):1945&ndash;1954; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28208246 28208246]; doi: [https://dx.doi.org/10.1021/acs.analchem.6b04433 10.1021/acs.analchem.6b04433]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28208246 32].
 +
#Cutler JA, Tahir R, Sreenivasamurthy SK, Mitchell C, Renuse S, Nirujogi RS, Patil AH, Heydarian M, Wong X, Wu X, Huang TC, Kim MS, Reddy KL, Pandey A,  (2017) &quot;Differential signaling through p190 and p210 BCR-ABL fusion proteins revealed by interactome and phosphoproteome analysis.&quot; <i>Leukemia</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28210003 28210003]; doi: [https://dx.doi.org/10.1038/leu.2017.61 10.1038/leu.2017.61]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28210003 20].
 +
#Hartwig T, Montinaro A, von Karstedt S, Sevko A, Surinova S, Chakravarthy A, Taraborrelli L, Draber P, Lafont E, Arce Vargas F, El-Bahrawy MA, Quezada SA, Walczak H,  (2017) &quot;The TRAIL-Induced Cancer Secretome Promotes a Tumor-Supportive Immune Microenvironment via CCR2.&quot; <i>Mol Cell</i> <b>65</b>(4):730&ndash;742.e5; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28212753 28212753]; doi: [https://dx.doi.org/10.1016/j.molcel.2017.01.021 10.1016/j.molcel.2017.01.021]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28212753 6].
 +
#Al Shweiki MR, M&ouml;nchgesang S, Majovsky P, Thieme D, Trutschel D, Hoehenwarter W,  (2017) &quot;Assessment of Label-Free Quantification in Discovery Proteomics and Impact of Technological Factors and Natural Variability of Protein Abundance.&quot; <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28217993 28217993]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00645 10.1021/acs.jproteome.6b00645]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28217993 54].
 +
#Swertfeger DK, Li H, Rebholz S, Zhu X, Shah AS, Davidson WS, Lu LJ,  (2017) &quot;Mapping atheroprotective functions and related proteins/lipoproteins in size fractionated human plasma.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28223350 28223350]; doi: [https://dx.doi.org/10.1074/mcp.M116.066290 10.1074/mcp.M116.066290]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28223350 180].
 +
#Abelin JG, Keskin DB, Sarkizova S, Hartigan CR, Zhang W, Sidney J, Stevens J, Lane W, Zhang GL, Eisenhaure TM, Clauser KR, Hacohen N, Rooney MS, Carr SA, Wu CJ,  (2017) &quot;Mass Spectrometry Profiling of HLA-Associated Peptidomes in Mono-allelic Cells Enables More Accurate Epitope Prediction.&quot; <i>Immunity</i> <b>46</b>(2):315&ndash;326; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28228285 28228285]; doi: [https://dx.doi.org/10.1016/j.immuni.2017.02.007 10.1016/j.immuni.2017.02.007]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28228285 87].
 +
#Groves JA, Maduka AO, O&#39;Meally RN, Cole RN, Zachara NE,  (2017) &quot;Fatty acid synthase inhibits the O-GlcNAcase during oxidative stress.&quot; <i>J Biol Chem</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28232487 28232487]; doi: [https://dx.doi.org/10.1074/jbc.M116.760785 10.1074/jbc.M116.760785]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28232487 2].
 +
#Funnell T, Tasaki S, Oloumi A, Araki S, Kong E, Yap D, Nakayama Y, Hughes CS, Cheng SG, Tozaki H, Iwatani M, Sasaki S, Ohashi T, Miyazaki T, Morishita N, Morishita D, Ogasawara-Shimizu M, Ohori M, Nakao S, Karashima M, Sano M, Murai A, Nomura T, Uchiyama N, Kawamoto T, Hara R, Nakanishi O, Shumansky K, Rosner J, Wan A, McKinney S, Morin GB, Nakanishi A, Shah S, Toyoshiba H, Aparicio S,  (2017) &quot;CLK-dependent exon recognition and conjoined gene formation revealed with a novel small molecule inhibitor.&quot; <i>Nat Commun</i> <b>8</b>(1):7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28232751 28232751]; doi: [https://dx.doi.org/10.1038/s41467-016-0008-7 10.1038/s41467-016-0008-7]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28232751 3].
 +
#Koppenol-Raab M, Sjoelund VH, Manes NP, Gottschalk RA, Dutta B, Benet ZL, Fraser ID, Nita-Lazar A,  (2017) &quot;Proteome and secretome analysis reveals differential post-transcriptional regulation of Toll-like receptor responses.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28235783 28235783]; doi: [https://dx.doi.org/10.1074/mcp.M116.064261 10.1074/mcp.M116.064261]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28235783 629].
 +
#Arend KC, Lenarcic EM, Vincent HA, Rashid N, Lazear E, McDonald IM, Gilbert TS, East MP, Herring LE, Johnson GL, Graves L, Moorman NJ,  (2017) &quot;Kinome Profiling Identifies Druggable Targets For Novel HCMV Antivirals.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28237943 28237943]; doi: [https://dx.doi.org/10.1074/mcp.M116.065375 10.1074/mcp.M116.065375]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28237943 14].
 +
#Jia X, Chen J, Megger DA, Zhang X, Kozlowski M, Zhang L, Fang Z, Li J, Chu Q, Wu M, Li Y, Sitek B, Yuan Z,  (2017) &quot;Label-free Proteomic Analysis of Exosomes Derived from Inducible Hepatitis B Virus-Replicating HepAD38 Cell Line.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28242843 28242843]; doi: [https://dx.doi.org/10.1074/mcp.M116.063503 10.1074/mcp.M116.063503]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28242843 12].
 +
#Bay&eacute;s &Agrave;, Collins MO, Reig-Viader R, Gou G, Goulding D, Izquierdo A, Choudhary JS, Emes RD, Grant SG,  (2017) &quot;Evolution of complexity in the zebrafish synapse proteome.&quot; <i>Nat Commun</i> <b>8</b>:14613; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28252024 28252024]; doi: [https://dx.doi.org/10.1038/ncomms14613 10.1038/ncomms14613]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28252024 17].
 +
#Liberton M, Chrisler WB, Nicora CD, Moore RJ, Smith RD, Koppenaal DW, Pakrasi HB, Jacobs JM,  (2017) &quot;Phycobilisome truncation causes widespread proteome changes in Synechocystis sp. PCC 6803.&quot; <i>PLoS One</i> <b>12</b>(3):e0173251; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28253354 28253354]; doi: [https://dx.doi.org/10.1371/journal.pone.0173251 10.1371/journal.pone.0173251]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28253354 36].
 +
#Ib&aacute;&ntilde;ez MI, Cabello P, Luque-Almagro VM, S&aacute;ez LP, Olaya A, S&aacute;nchez de Medina V, Luque de Castro MD, Moreno-Vivi&aacute;n C, Rold&aacute;n MD,  (2017) &quot;Quantitative proteomic analysis of Pseudomonas pseudoalcaligenes CECT5344 in response to industrial cyanide-containing wastewaters using Liquid Chromatography-Mass Spectrometry/Mass Spectrometry (LC-MS/MS).&quot; <i>PLoS One</i> <b>12</b>(3):e0172908; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28253357 28253357]; doi: [https://dx.doi.org/10.1371/journal.pone.0172908 10.1371/journal.pone.0172908]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28253357 8].
 +
#Weinert BT, Satpathy S, Hansen BK, Lyon D, Jensen LJ, Choudhary C,  (2017) &quot;Accurate quantification of site-specific acetylation stoichiometry reveals the impact of sirtuin deacetylase CobB on the <i>E. coli</i> acetylome.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28254776 28254776]; doi: [https://dx.doi.org/10.1074/mcp.M117.067587 10.1074/mcp.M117.067587]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28254776 140].
 +
#Casanovas A, Pinto-Llorente R, Carrascal M, Abian J,  (2017) &quot;Large-Scale Filter-Aided Sample Preparation Method for the Analysis of the Ubiquitinome.&quot; <i>Anal Chem</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28260372 28260372]; doi: [https://dx.doi.org/10.1021/acs.analchem.6b04804 10.1021/acs.analchem.6b04804]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28260372 76].
 +
#Giddey AD, de Kock E, Nakedi KC, Garnett S, Nel AJ, Soares NC, Blackburn JM,  (2017) &quot;A temporal proteome dynamics study reveals the molecular basis of induced phenotypic resistance in Mycobacterium smegmatis at sub-lethal rifampicin concentrations.&quot; <i>Sci Rep</i> <b>7</b>:43858; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28262820 28262820]; doi: [https://dx.doi.org/10.1038/srep43858 10.1038/srep43858]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28262820 18].
 +
#Rieckmann JC, Geiger R, Hornburg D, Wolf T, Kveler K, Jarrossay D, Sallusto F, Shen-Orr SS, Lanzavecchia A, Mann M, Meissner F,  (2017) &quot;Social network architecture of human immune cells unveiled by quantitative proteomics.&quot; <i>Nat Immunol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28263321 28263321]; doi: [https://dx.doi.org/10.1038/ni.3693 10.1038/ni.3693]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28263321 454].
 +
#Kanshin E, Giguere S, Cheng J, Tyers MD, Thibault P,  (2017) &quot;Machine learning of global phosphoproteomic profiles enables discrimination of direct versus indirect kinase substrates.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28265048 28265048]; doi: [https://dx.doi.org/10.1074/mcp.M116.066233 10.1074/mcp.M116.066233]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28265048 32].
 +
#Espadas G, Borr&agrave;s E, Chiva C, Sabid&oacute; E,  (2017) &quot;Evaluation of different peptide fragmentation types and mass analyzers in data-dependent methods using an Orbitrap Fusion Lumos Tribrid mass spectrometer.&quot; <i>Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28266123 28266123]; doi: [https://dx.doi.org/10.1002/pmic.201600416 10.1002/pmic.201600416]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28266123 57].
 +
#Rapisarda V, Borghesan M, Miguela V, Encheva V, Snijders AP, Lujambio A, O&#39;Loghlen A,  (2017) &quot;Integrin Beta 3 Regulates Cellular Senescence by Activating the TGF-&beta; Pathway.&quot; <i>Cell Rep</i> <b>18</b>(10):2480&ndash;2493; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28273461 28273461]; doi: [https://dx.doi.org/10.1016/j.celrep.2017.02.012 10.1016/j.celrep.2017.02.012]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28273461 32].
 +
#Zhang T, Wei W, Dirsch O, Kr&uuml;ger T, Kan C, Xie C, Kniemeyer O, Fang H, Settmacher U, Dahmen U,  (2017) &quot;Identification of Proteins Interacting with Cytoplasmic High-Mobility Group Box 1 during the Hepatocellular Response to Ischemia Reperfusion Injury.&quot; <i>Int J Mol Sci</i> <b>18</b>(1):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28275217 28275217]; doi: [https://dx.doi.org/10.3390/ijms18010167 10.3390/ijms18010167]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28275217 4].
 +
#Sadewasser A, Paki K, Eichelbaum K, Bogdanow B, Saenger S, Budt M, Lesch M, Hinz KP, Herrmann A, Meyer TF, Karlas A, Selbach M, Wolff T,  (2017) &quot;Quantitative proteomic approach identifies Vpr binding protein as novel host factor supporting influenza A virus infections in human cells.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28289176 28289176]; doi: [https://dx.doi.org/10.1074/mcp.M116.065904 10.1074/mcp.M116.065904]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28289176 20].
 +
#Blattner M, Liu D, Robinson BD, Huang D, Poliakov A, Gao D, Nataraj S, Deonarine LD, Augello MA, Sailer V, Ponnala L, Ittmann M, Chinnaiyan AM, Sboner A, Chen Y, Rubin MA, Barbieri CE,  (2017) &quot;SPOP Mutation Drives Prostate Tumorigenesis In&nbsp;Vivo through Coordinate Regulation of PI3K/mTOR and AR Signaling.&quot; <i>Cancer Cell</i> <b>31</b>(3):436&ndash;451; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28292441 28292441]; doi: [https://dx.doi.org/10.1016/j.ccell.2017.02.004 10.1016/j.ccell.2017.02.004]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28292441 96].
 +
#Bundy JL, Vied C, Nowakowski RS,  (2017) &quot;Sex differences in the molecular signature of the developing mouse hippocampus.&quot; <i>BMC Genomics</i> <b>18</b>(1):237; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28302071 28302071]; doi: [https://dx.doi.org/10.1186/s12864-017-3608-7 10.1186/s12864-017-3608-7]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28302071 51].
 +
#Winter M, Dokic I, Schlegel J, Warnken U, Debus J, Abdollahi A, Schn&ouml;lzer M,  (2017) &quot;Deciphering the acute cellular phosphoproteome response to irradiation with X-rays, protons and carbon ions.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28302921 28302921]; doi: [https://dx.doi.org/10.1074/mcp.M116.066597 10.1074/mcp.M116.066597]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28302921 269].
 +
#Langley SR, Willeit K, Didangelos A, Matic LP, Skroblin P, Barallobre-Barreiro J, Lengquist M, Rungger G, Kapustin A, Kedenko L, Molenaar C, Lu R, Barwari T, Suna G, Yin X, Iglseder B, Paulweber B, Willeit P, Shalhoub J, Pasterkamp G, Davies AH, Monaco C, Hedin U, Shanahan CM, Willeit J, Kiechl S, Mayr M,  (2017) &quot;Extracellular matrix proteomics identifies molecular signature of symptomatic carotid plaques.&quot; <i>J Clin Invest</i> <b>127</b>(4):1546&ndash;1560; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28319050 28319050]; doi: [https://dx.doi.org/10.1172/JCI86924 10.1172/JCI86924]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28319050 936].
 +
#Kliza K, Taumer C, Pinzuti I, Franz-Wachtel M, Kunzelmann S, Stieglitz B, Macek B, Husnjak K,  (2017) &quot;Internally tagged ubiquitin: a tool to identify linear polyubiquitin-modified proteins by mass spectrometry.&quot; <i>Nat Methods</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28319114 28319114]; doi: [https://dx.doi.org/10.1038/nmeth.4228 10.1038/nmeth.4228]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28319114 32].
 +
#Khodadoust MS, Olsson N, Wagar LE, Haabeth OA, Chen B, Swaminathan K, Rawson K, Liu CL, Steiner D, Lund P, Rao S, Zhang L, Marceau C, Stehr H, Newman AM, Czerwinski DK, Carlton VE, Moorhead M, Faham M, Kohrt HE, Carette J, Green MR, Davis MM, Levy R, Elias JE, Alizadeh AA,  (2017) &quot;Antigen presentation profiling reveals recognition of lymphoma immunoglobulin neoantigens.&quot; <i>Nature</i> <b>543</b>(7647):723&ndash;727; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28329770 28329770]; doi: [https://dx.doi.org/10.1038/nature21433 10.1038/nature21433]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28329770 147].
 +
#Zhang X, Maity T, Kashyap MK, Bansal M, Venugopalan A, Singh S, Awasthi S, Marimuthu A, Jacob HK, Belkina N, Pitts S, Cultraro CM, Gao S, Kirkali F, Biswas R, Chaerkady R, Califano A, Pandey A, Guha U,  (2017) &quot;Quantitative tyrosine phosphoproteomics of EGFR tyrosine kinase inhibitor-treated lung adenocarcinoma cells reveals potential novel biomarkers of therapeutic response.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28331001 28331001]; doi: [https://dx.doi.org/10.1074/mcp.M117.067439 10.1074/mcp.M117.067439]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28331001 41].
 +
#Nathan A, Reinhardt P, Kruspe D, J&ouml;r&szlig; T, Groth M, Nolte H, Habenicht A, Herrmann J, Holschbach V, Toth B, Kr&uuml;ger M, Wang ZQ, Platzer M, Englert C,  (2017) &quot;The Wilms tumor protein Wt1 contributes to female fertility by regulating oviductal proteostasis.&quot; <i>Hum Mol Genet</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28334862 28334862]; doi: [https://dx.doi.org/10.1093/hmg/ddx075 10.1093/hmg/ddx075]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28334862 48].
 +
#Tien JF, Mazloomian A, Cheng SG, Hughes CS, Chow CC, Canapi LT, Oloumi A, Trigo-Gonzalez G, Bashashati A, Xu J, Chang VC, Shah SP, Aparicio S, Morin GB,  (2017) &quot;CDK12 regulates alternative last exon mRNA splicing and promotes breast cancer cell invasion.&quot; <i>Nucleic Acids Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28334900 28334900]; doi: [https://dx.doi.org/10.1093/nar/gkx187 10.1093/nar/gkx187]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28334900 11].
 +
#O&#39;Neill JR, Pak HS, Pairo-Castineira E, Save V, Paterson-Brown S, Nenutil R, Vojt&#x11B;&scaron;ek B, Overton I, Scherl A, Hupp TR,  (2017) &quot;Quantitative shotgun proteomics unveils candidate novel oesophageal adenocarcinoma-specific proteins.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28336725 28336725]; doi: [https://dx.doi.org/10.1074/mcp.M116.065078 10.1074/mcp.M116.065078]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28336725 7].
 +
#Francavilla C, Lupia M, Tsafou K, Villa A, Kowalczyk K, Rakownikow Jersie-Christensen R, Bertalot G, Confalonieri S, Brunak S, Jensen LJ, Cavallaro U, Olsen JV,  (2017) &quot;Phosphoproteomics of Primary Cells Reveals Druggable Kinase Signatures in Ovarian Cancer.&quot; <i>Cell Rep</i> <b>18</b>(13):3242&ndash;3256; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28355574 28355574]; doi: [https://dx.doi.org/10.1016/j.celrep.2017.03.015 10.1016/j.celrep.2017.03.015]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28355574 59].
 +
#Casanova R, Xia D, Rulle U, Nanni P, Grossmann J, Vrugt B, Wettstein R, Ballester R, Astolfo A, Weder W, Moch H, Stampanoni M, Beck AH, Soltermann A,  (2017) &quot;Morphoproteomic Characterization of Lung Squamous Cell Carcinoma Fragmentation, a Histological Marker of Increased Tumor Invasiveness.&quot; <i>Cancer Res</i> <b>77</b>(10):2585&ndash;2593; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28364001 28364001]; doi: [https://dx.doi.org/10.1158/0008-5472.CAN-16-2363 10.1158/0008-5472.CAN-16-2363]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28364001 49].
 +
#Chatzinikolaou G, Apostolou Z, Aid-Pavlidis T, Ioannidou A, Karakasilioti I, Papadopoulos GL, Aivaliotis M, Tsekrekou M, Strouboulis J, Kosteas T, Garinis GA,  (2017) &quot;ERCC1-XPF cooperates with CTCF and cohesin to&nbsp;facilitate the developmental silencing of imprinted&nbsp;genes.&quot; <i>Nat Cell Biol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28368372 28368372]; doi: [https://dx.doi.org/10.1038/ncb3499 10.1038/ncb3499]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28368372 146].
 +
#Schaible B, Rodriguez J, Garcia A, von Kriegsheim A, McClean S, Hickey C, Keogh CE, Brown E, Schaffer K, Broquet A, Taylor CT,  (2017) &quot;Hypoxia Reduces the Pathogenicity of Pseudomonas aeruginosa by Decreasing the Expression of Multiple Virulence Factors.&quot; <i>J Infect Dis</i> <b>215</b>(9):1459&ndash;1467; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28368464 28368464]; doi: [https://dx.doi.org/10.1093/infdis/jix139 10.1093/infdis/jix139]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28368464 18].
 +
#Duguet F, Locard-Paulet M, Marcellin M, Chaoui K, Bernard I, Andreoletti O, Lesourne R, Burlet-Schiltz O, Gonzalez de Peredo A, Saoudi A,  (2017) &quot;Proteomic analysis of regulatory T cells reveals the importance of Themis1 in the control of their suppressive function.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28373295 28373295]; doi: [https://dx.doi.org/10.1074/mcp.M116.062745 10.1074/mcp.M116.062745]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28373295 26].
 +
#Namuduri AV, Heras G, Mi J, Cacciani N, H&ouml;rnaeus K, Konzer A, Bergstr&ouml;m Lind S, Larsson L, Gastaldello S,  (2017) &quot;A proteomic approach to identify alterations in the SUMO network during controlled mechanical ventilation in rat diaphragm muscle.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28373296 28373296]; doi: [https://dx.doi.org/10.1074/mcp.M116.066159 10.1074/mcp.M116.066159]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28373296 80].
 +
#Anderson KA, Huynh FK, Fisher-Wellman K, Stuart JD, Peterson BS, Douros JD, Wagner GR, Thompson JW, Madsen AS, Green MF, Sivley RM, Ilkayeva OR, Stevens RD, Backos DS, Capra JA, Olsen CA, Campbell JE, Muoio DM, Grimsrud PA, Hirschey MD,  (2017) &quot;SIRT4 Is a Lysine Deacylase that Controls Leucine Metabolism and Insulin Secretion.&quot; <i>Cell Metab</i> <b>25</b>(4):838&ndash;855.e15; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28380376 28380376]; doi: [https://dx.doi.org/10.1016/j.cmet.2017.03.003 10.1016/j.cmet.2017.03.003]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28380376 4].
 +
#Casas-Vila N, Bluhm A, Sayols S, Dinges N, Dejung M, Altenhein T, Kappei D, Altenhein B, Roignant JY, Butter F,  (2017) &quot;The developmental proteome of <i>Drosophila melanogaster</i>.&quot; <i>Genome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28381612 28381612]; doi: [https://dx.doi.org/10.1101/gr.213694.116 10.1101/gr.213694.116]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28381612 124].
 +
#Chiang CK, Xu B, Mehta N, Mayne J, Sun WY, Cheng K, Ning Z, Dong J, Zou H, Cheng HM, Figeys D,  (2017) &quot;Phosphoproteome Profiling Reveals Circadian Clock Regulation of Posttranslational Modifications in the Murine Hippocampus.&quot; <i>Front Neurol</i> <b>8</b>:110; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28382018 28382018]; doi: [https://dx.doi.org/10.3389/fneur.2017.00110 10.3389/fneur.2017.00110]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28382018 299].
 +
#Young C, Podtelejnikov AV, Nielsen ML,  (2017) &quot;Improved Reversed Phase Chromatography of Hydrophilic Peptides from Spatial and Temporal Changes in Column Temperature.&quot; <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28387123 28387123]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b01055 10.1021/acs.jproteome.6b01055]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28387123 12].
 +
#Beach RR, Ricci-Tam C, Brennan CM, Moomau CA, Hsu PH, Hua B, Silberman RE, Springer M, Amon A,  (2017) &quot;Aneuploidy Causes Non-genetic Individuality.&quot; <i>Cell</i> <b>169</b>(2):229&ndash;242.e21; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28388408 28388408]; doi: [https://dx.doi.org/10.1016/j.cell.2017.03.021 10.1016/j.cell.2017.03.021]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28388408 3].
 +
#Worst TS, von Hardenberg J, Gross JC, Erben P, Schnoelzer M, Hausser I, Bugert P, Michel MS, Boutros M,  (2017) &quot;A database-augmented, exosome-based mass spectrometry approach exemplarily identifies circulating claudin 3 as biomarker in prostate cancer.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28396511 28396511]; doi: [https://dx.doi.org/10.1074/mcp.M117.068577 10.1074/mcp.M117.068577]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28396511 17].
 +
#Mohr S, Doebele C, Comoglio F, Berg T, Beck J, Bohnenberger H, Alexe G, Corso J, Str&ouml;bel P, Wachter A, Beissbarth T, Schn&uuml;tgen F, Cremer A, Haetscher N, G&ouml;llner S, Rouhi A, Palmqvist L, Rieger MA, Schroeder T, B&ouml;nig H, M&uuml;ller-Tidow C, Kuchenbauer F, Sch&uuml;tz E, Green AR, Urlaub H, Stegmaier K, Humphries RK, Serve H, Oellerich T,  (2017) &quot;Hoxa9 and Meis1 Cooperatively Induce Addiction to Syk Signaling by Suppressing miR-146a in Acute Myeloid Leukemia.&quot; <i>Cancer Cell</i> <b>31</b>(4):549&ndash;562.e11; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28399410 28399410]; doi: [https://dx.doi.org/10.1016/j.ccell.2017.03.001 10.1016/j.ccell.2017.03.001]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28399410 30].
 +
#Rinschen MM, Grahammer F, Hoppe AK, Kohli P, Hagmann H, Kretz O, Bertsch S, H&ouml;hne M, G&ouml;bel H, Bartram MP, Gandhirajan RK, Kr&uuml;ger M, Brinkkoetter PT, Huber TB, Kann M, Wickstr&ouml;m SA, Benzing T, Schermer B,  (2017) &quot;YAP-mediated mechanotransduction determines the podocyte&#39;s response to damage.&quot; <i>Sci Signal</i> <b>10</b>(474):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28400537 28400537]; doi: [https://dx.doi.org/10.1126/scisignal.aaf8165 10.1126/scisignal.aaf8165]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28400537 23].
 +
#M&uuml;ller MM, Lehmann R, Klassert TE, Reifenstein S, Conrad T, Moore C, Kuhn A, Behnert A, Guthke R, Driesch D, Slevogt H,  (2017) &quot;Global analysis of glycoproteins identifies markers of endotoxin tolerant monocytes and GPR84 as a modulator of TNF&alpha; expression.&quot; <i>Sci Rep</i> <b>7</b>(1):838; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28404994 28404994]; doi: [https://dx.doi.org/10.1038/s41598-017-00828-y 10.1038/s41598-017-00828-y]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28404994 138].
 +
#Wang M, Guo Y, Wang M, Zhou T, Xue Y, Du G, Wei X, Wang J, Qi L, Zhang H, Li L, Ye L, Guo X, Wu X,  (2017) &quot;The GDNF-responsive Phosphoprotein Landscape Identifies Raptor Phosphorylation Required for Spermatogonial Progenitor Cell Proliferation.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28408662 28408662]; doi: [https://dx.doi.org/10.1074/mcp.M116.065797 10.1074/mcp.M116.065797]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28408662 21].
 +
#Shen X, Shen S, Li J, Hu Q, Nie L, Tu C, Wang X, Orsburn B, Wang J, Qu J,  (2017) &quot;An IonStar experimental strategy for MS1 ion current-based quantification using ultra-high-field Orbitrap: reproducible, in-depth and accurate protein measurement in larger cohorts.&quot; <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28412812 28412812]; doi: [https://dx.doi.org/10.1021/acs.jproteome.7b00061 10.1021/acs.jproteome.7b00061]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28412812 20].
 +
#Kathiriya JJ, Nakra N, Nixon J, Patel PS, Vaghasiya V, Alhassani A, Tian Z, Allen-Gipson D, Dav&eacute; V,  (2017) &quot;Galectin-1 inhibition attenuates profibrotic signaling in hypoxia-induced pulmonary fibrosis.&quot; <i>Cell Death Discov</i> <b>3</b>:17010; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28417017 28417017]; doi: [https://dx.doi.org/10.1038/cddiscovery.2017.10 10.1038/cddiscovery.2017.10]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28417017 3].
 +
#Perl K, Ushakov K, Pozniak Y, Yizhar-Barnea O, Bhonker Y, Shivatzki S, Geiger T, Avraham KB, Shamir R,  (2017) &quot;Reduced changes in protein compared to mRNA levels across non-proliferating tissues.&quot; <i>BMC Genomics</i> <b>18</b>(1):305; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28420336 28420336]; doi: [https://dx.doi.org/10.1186/s12864-017-3683-9 10.1186/s12864-017-3683-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28420336 6].
 +
#Mendoza-Viveros L, Chiang CK, Ong JLK, Hegazi S, Cheng AH, Bouchard-Cannon P, Fana M, Lowden C, Zhang P, Bothorel B, Michniewicz MG, Magill ST, Holmes MM, Goodman RH, Simonneaux V, Figeys D, Cheng HM,  (2017) &quot;miR-132/212 Modulates Seasonal Adaptation and Dendritic Morphology of the Central Circadian Clock.&quot; <i>Cell Rep</i> <b>19</b>(3):505&ndash;520; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28423315 28423315]; doi: [https://dx.doi.org/10.1016/j.celrep.2017.03.057 10.1016/j.celrep.2017.03.057]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28423315 128].
 +
#Maus RLG, Jakub JW, Nevala WK, Christensen TA, Noble-Orcutt K, Sachs Z, Hieken TJ, Markovic SN,  (2017) &quot;Human Melanoma-Derived Extracellular Vesicles Regulate Dendritic Cell Maturation.&quot; <i>Front Immunol</i> <b>8</b>:358; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28424693 28424693]; doi: [https://dx.doi.org/10.3389/fimmu.2017.00358 10.3389/fimmu.2017.00358]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28424693 18].
 +
#Treiber T, Treiber N, Plessmann U, Harlander S, Dai&szlig; JL, Eichner N, Lehmann G, Schall K, Urlaub H, Meister G,  (2017) &quot;A Compendium of RNA-Binding Proteins that Regulate MicroRNA Biogenesis.&quot; <i>Mol Cell</i> <b>66</b>(2):270&ndash;284.e13; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28431233 28431233]; doi: [https://dx.doi.org/10.1016/j.molcel.2017.03.014 10.1016/j.molcel.2017.03.014]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28431233 3033].
 +
#Beyene GT, Kalayou S, Riaz T, Tonjum T,  (2017) &quot;Comparative proteomic analysis of Neisseria meningitidis wildtype and dprA null mutant strains links DNA processing to pilus biogenesis.&quot; <i>BMC Microbiol</i> <b>17</b>(1):96; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28431522 28431522]; doi: [https://dx.doi.org/10.1186/s12866-017-1004-8 10.1186/s12866-017-1004-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28431522 108].
 +
#Xu B, Gao Y, Zhan S, Ge W,  (2017) &quot;Quantitative proteomic profiling for clarification of the crucial roles of lysosomes in microbial infections.&quot; <i>Mol Immunol</i> <b>87</b>:122&ndash;131; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28433889 28433889]; doi: [https://dx.doi.org/10.1016/j.molimm.2017.04.002 10.1016/j.molimm.2017.04.002]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28433889 2].
 +
#Clulow JA, Storck EM, Lanyon-Hogg T, Kalesh KA, Jones LH, Tate EW,  (2017) &quot;Competition-based, quantitative chemical proteomics in breast cancer cells identifies new target profiles for sulforaphane.&quot; <i>Chem Commun (Camb)</i> <b>53</b>(37):5182&ndash;5185; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28439590 28439590]; doi: [https://dx.doi.org/10.1039/c6cc08797c 10.1039/c6cc08797c]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28439590 32].
 +
#Yeung ATY, Hale C, Lee AH, Gill EE, Bushell W, Parry-Smith D, Goulding D, Pickard D, Roumeliotis T, Choudhary J, Thomson N, Skarnes WC, Dougan G, Hancock REW,  (2017) &quot;Exploiting induced pluripotent stem cell-derived macrophages to unravel host factors influencing Chlamydia trachomatis pathogenesis.&quot; <i>Nat Commun</i> <b>8</b>:15013; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28440293 28440293]; doi: [https://dx.doi.org/10.1038/ncomms15013 10.1038/ncomms15013]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28440293 1].
 +
#Labots M, van der Mijn JC, Beekhof R, Piersma SR, de Goeij-de Haas RR, Pham TV, Knol JC, Dekker H, van Grieken NCT, Verheul HMW, Jim&eacute;nez CR,  (2017) &quot;Phosphotyrosine-based-phosphoproteomics scaled-down to biopsy level for analysis of individual tumor biology and treatment selection.&quot; <i>J Proteomics</i> <b>162</b>:99&ndash;107; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28442448 28442448]; doi: [https://dx.doi.org/10.1016/j.jprot.2017.04.014 10.1016/j.jprot.2017.04.014]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28442448 40].
 +
#Arntzen M&Oslash;, V&aacute;rnai A, Mackie RI, Eijsink VGH, Pope PB,  (2017) &quot;Outer membrane vesicles from Fibrobacter succinogenes S85 contain an array of carbohydrate-active enzymes with versatile polysaccharide-degrading capacity.&quot; <i>Environ Microbiol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28447389 28447389]; doi: [https://dx.doi.org/10.1111/1462-2920.13770 10.1111/1462-2920.13770]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28447389 20].
 +
#Nguyen EV, Huhtinen K, Goo YA, Kaipio K, Andersson N, Rantanen V, Hynninen J, Lahesmaa R, Carpen O, Goodlett DR,  (2017) &quot;Hyper-phosphorylation of Sequestosome-1 distinguishes resistance to cisplatin in patient derived high grade serous ovarian cancer cells.&quot; <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28455291 28455291]; doi: [https://dx.doi.org/10.1074/mcp.M116.058321 10.1074/mcp.M116.058321]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28455291 60].
 +
#Aviner R, Hofmann S, Elman T, Shenoy A, Geiger T, Elkon R, Ehrlich M, Elroy-Stein O,  (2017) &quot;Proteomic analysis of polyribosomes identifies splicing factors as potential regulators of translation during mitosis.&quot; <i>Nucleic Acids Res</i> <b>45</b>(10):5945&ndash;5957; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28460002 28460002]; doi: [https://dx.doi.org/10.1093/nar/gkx326 10.1093/nar/gkx326]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28460002 15].
 +
#Tran TT, Strozynski M, Thiede B,  (2017) &quot;Quantitative phosphoproteome analysis of cisplatin-induced apoptosis in Jurkat T cells.&quot; <i>Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28464451 28464451]; doi: [https://dx.doi.org/10.1002/pmic.201600470 10.1002/pmic.201600470]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28464451 32].
 +
#Ooi JD, Petersen J, Tan YH, Huynh M, Willett ZJ, Ramarathinam SH, Eggenhuizen PJ, Loh KL, Watson KA, Gan PY, Alikhan MA, Dudek NL, Handel A, Hudson BG, Fugger L, Power DA, Holt SG, Coates PT, Gregersen JW, Purcell AW, Holdsworth SR, La Gruta NL, Reid HH, Rossjohn J, Kitching AR,  (2017) &quot;Dominant protection from HLA-linked autoimmunity by antigen-specific regulatory T cells.&quot; <i>Nature</i> <b>545</b>(7653):243&ndash;247; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28467828 28467828]; doi: [https://dx.doi.org/10.1038/nature22329 10.1038/nature22329]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28467828 30].
 +
#van Aalderen MC, van den Biggelaar M, Remmerswaal EBM, van Alphen FPJ, Meijer AB, Ten Berge IJM, van Lier RAW,  (2017) &quot;Label-free Analysis of CD8<sup>+</sup> T Cell Subset Proteomes Supports a Progressive Differentiation Model of Human-Virus-Specific T Cells.&quot; <i>Cell Rep</i> <b>19</b>(5):1068&ndash;1079; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28467900 28467900]; doi: [https://dx.doi.org/10.1016/j.celrep.2017.04.014 10.1016/j.celrep.2017.04.014]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28467900 84].
 +
#Tello-Lafoz M, Mart&iacute;nez-Mart&iacute;nez G, Rodr&iacute;guez-Rodr&iacute;guez C, Albar JP, Huse M, Gharbi S, Merida I,  (2017) &quot;SNX27 interactome in T lymphocytes identifies ZO-2 dynamic redistribution at the immune synapse.&quot; <i>Traffic</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28477369 28477369]; doi: [https://dx.doi.org/10.1111/tra.12492 10.1111/tra.12492]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28477369 57].
 +
#Ozdian T, Holub D, Maceckova Z, Varanasi L, Rylova G, Rehulka J, Vaclavkova J, Slavik H, Moudry P, Znojek P, Stankova J, de Sanctis JB, Hajduch M, Dzubak P,  (2017) &quot;Proteomic profiling reveals DNA damage, nucleolar and ribosomal stress are the main responses to oxaliplatin treatment in cancer cells.&quot; <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28478306 28478306]; doi: [https://dx.doi.org/10.1016/j.jprot.2017.05.005 10.1016/j.jprot.2017.05.005]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28478306 63].
 +
#Murr A, Pink C, Hammer E, Michalik S, Dhople VM, Holtfreter B, V&ouml;lker U, Kocher T, Gesell Salazar M,  (2017) &quot;Cross-Sectional Association of Salivary Proteins with Age, Sex, Body Mass Index, Smoking, and Education.&quot; <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28481548 28481548]; doi: [https://dx.doi.org/10.1021/acs.jproteome.7b00133 10.1021/acs.jproteome.7b00133]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28481548 209].
 +
#Kilpinen H, Goncalves A, Leha A, Afzal V, Alasoo K, Ashford S, Bala S, Bensaddek D, Casale FP, Culley OJ, Danecek P, Faulconbridge A, Harrison PW, Kathuria A, McCarthy D, McCarthy SA, Meleckyte R, Memari Y, Moens N, Soares F, Mann A, Streeter I, Agu CA, Alderton A, Nelson R, Harper S, Patel M, White A, Patel SR, Clarke L, Halai R, Kirton CM, Kolb-Kokocinski A, Beales P, Birney E, Danovi D, Lamond AI, Ouwehand WH, Vallier L, Watt FM, Durbin R, Stegle O, Gaffney DJ,  (2017) &quot;Common genetic variation drives molecular heterogeneity in human iPSCs.&quot; <i>Nature</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28489815 28489815]; doi: [https://dx.doi.org/10.1038/nature22403 10.1038/nature22403]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28489815 72].
 +
#Jahn A, Rane G, Paszkowski-Rogacz M, Sayols S, Bluhm A, Han CT, Dra&scaron;kovi&#x10D; I, Londo&ntilde;o-Vallejo JA, Kumar AP, Buchholz F, Butter F, Kappei D,  (2017) &quot;ZBTB48 is both a vertebrate telomere-binding protein and a transcriptional activator.&quot; <i>EMBO Rep</i> <b>18</b>(6):929&ndash;946; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28500257 28500257]; doi: [https://dx.doi.org/10.15252/embr.201744095 10.15252/embr.201744095]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28500257 35].
 +
#Kramer DA, Eldeeb MA, Wuest M, Mercer J, Fahlman RP,  (2017) &quot;Proteomic characterization of EL4 lymphoma derived tumors upon chemotherapy treatment reveals potential roles for lysosomes and caspase-6 during tumor cell death in vivo.&quot; <i>Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28508578 28508578]; doi: [https://dx.doi.org/10.1002/pmic.201700060 10.1002/pmic.201700060]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28508578 150].
 +
#Peng W, Zhang Y, Zhu R, Mechref Y,  (2017) &quot;Comparative Membrane Proteomics Analyses of Breast Cancer Cell Lines to Understand the Molecular Mechanism of Breast Cancer Brain Metastasis.&quot; <i>Electrophoresis</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28523741 28523741]; doi: [https://dx.doi.org/10.1002/elps.201700027 10.1002/elps.201700027]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28523741 18].
 +
#Zai X, Yang Q, Liu K, Li R, Qian M, Zhao T, Li Y, Yin Y, Dong D, Fu L, Li S, Xu J, Chen W,  (2017) &quot;A comprehensive proteogenomic study of the human Brucella vaccine strain 104&nbsp;M.&quot; <i>BMC Genomics</i> <b>18</b>(1):402; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28535754 28535754]; doi: [https://dx.doi.org/10.1186/s12864-017-3800-9 10.1186/s12864-017-3800-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28535754 90].
 +
#Yimer SA, Birhanu AG, Kalayou S, Riaz T, Zegeye ED, Beyene GT, Holm-Hansen C, Norheim G, Abebe M, Aseffa A, T&oslash;njum T,  (2017) &quot;Comparative Proteomic Analysis of <i>Mycobacterium tuberculosis</i> Lineage 7 and Lineage 4 Strains Reveals Differentially Abundant Proteins Linked to Slow Growth and Virulence.&quot; <i>Front Microbiol</i> <b>8</b>:795; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28536560 28536560]; doi: [https://dx.doi.org/10.3389/fmicb.2017.00795 10.3389/fmicb.2017.00795]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28536560 158].
 +
#Smallwood HS, Duan S, Morfouace M, Rezinciuc S, Shulkin BL, Shelat A, Zink EE, Milasta S, Bajracharya R, Oluwaseum AJ, Roussel MF, Green DR, Pasa-Tolic L, Thomas PG,  (2017) &quot;Targeting Metabolic Reprogramming by Influenza Infection for Therapeutic Intervention.&quot; <i>Cell Rep</i> <b>19</b>(8):1640&ndash;1653; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28538182 28538182]; doi: [https://dx.doi.org/10.1016/j.celrep.2017.04.039 10.1016/j.celrep.2017.04.039]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28538182 11].
 +
#Elmasri WA, Zhu R, Peng W, Al-Hariri M, Kobeissy F, Tran P, Hamood AN, Hegazy MF, Par&eacute; PW, Mechref Y,  (2017) &quot;Multitargeted Flavonoid Inhibition of the Pathogenic Bacterium Staphylococcus aureus: A Proteomic Characterization.&quot; <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28541047 28541047]; doi: [https://dx.doi.org/10.1021/acs.jproteome.7b00137 10.1021/acs.jproteome.7b00137]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28541047 12].
 +
#Fijalkowska D, Verbruggen S, Ndah E, Jonckheere V, Menschaert G, Van Damme P,  (2017) &quot;eIF1 modulates the recognition of suboptimal translation initiation sites and steers gene expression via uORFs.&quot; <i>Nucleic Acids Res</i> <b>45</b>(13):7997&ndash;8013; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28541577 28541577]; doi: [https://dx.doi.org/10.1093/nar/gkx469 10.1093/nar/gkx469]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28541577 19].
 +
#Hakimi O, Ternette N, Murphy R, Kessler BM, Carr A,  (2017) &quot;A quantitative label-free analysis of the extracellular proteome of human supraspinatus tendon reveals damage to the pericellular and elastic fibre niches in torn and aged tissue.&quot; <i>PLoS One</i> <b>12</b>(5):e0177656; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28542244 28542244]; doi: [https://dx.doi.org/10.1371/journal.pone.0177656 10.1371/journal.pone.0177656]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28542244 116].
 +
#Wu PW, Mason KE, Durbin-Johnson BP, Salemi M, Phinney BS, Rocke DM, Parker GJ, Rice RH,  (2017) &quot;Proteomic analysis of hair shafts from monozygotic twins: Expression profiles and genetically variant peptides.&quot; <i>Proteomics</i> <b>17</b>(13-14):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28544375 28544375]; doi: [https://dx.doi.org/10.1002/pmic.201600462 10.1002/pmic.201600462]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28544375 24].
 +
#Kume K, Cantwell H, Neumann FR, Jones AW, Snijders AP, Nurse P,  (2017) &quot;A systematic genomic screen implicates nucleocytoplasmic transport and membrane growth in nuclear size control.&quot; <i>PLoS Genet</i> <b>13</b>(5):e1006767; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28545058 28545058]; doi: [https://dx.doi.org/10.1371/journal.pgen.1006767 10.1371/journal.pgen.1006767]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28545058 192].
 +
#Meier SM, Kreutz D, Winter L, Klose MHM, Cseh K, Weiss T, Bileck A, Alte B, Mader JC, Jana S, Chatterjee A, Bhattacharyya A, Hejl M, Jakupec MA, Heffeter P, Berger W, Hartinger CG, Keppler BK, Wiche G, Gerner C,  (2017) &quot;An Organoruthenium Anticancer Agent Shows Unexpected Target Selectivity For Plectin.&quot; <i>Angew Chem Int Ed Engl</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28547791 28547791]; doi: [https://dx.doi.org/10.1002/anie.201702242 10.1002/anie.201702242]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28547791 4].
 +
#Hou J, Li Z, Zhong W, Hao Q, Lei L, Wang L, Zhao D, Xu P, Zhou Y, Wang Y, Xu T,  (2017) &quot;Temporal Transcriptomic and Proteomic Landscapes of Deteriorating Pancreatic Islets in Type 2 Diabetic Rats.&quot; <i>Diabetes</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28559245 28559245]; doi: [https://dx.doi.org/10.2337/db16-1305 10.2337/db16-1305]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28559245 12].
 +
#Li JY, Cai F, Ye XG, Liang JS, Li JK, Wu MY, Zhao D, Jiang ZD, You ZY, Zhong BX,  (2017) &quot;Comparative Proteomic Analysis of Posterior Silk Glands of Wild and Domesticated Silkworms Reveals Functional Evolution during Domestication.&quot; <i>J Proteome Res</i> <b>16</b>(7):2495&ndash;2507; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28569067 28569067]; doi: [https://dx.doi.org/10.1021/acs.jproteome.7b00077 10.1021/acs.jproteome.7b00077]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28569067 72].
 +
#Sanchez-Quiles V, Akimov V, Osinalde N, Francavilla C, Puglia M, Barrio-Hernandez I, Kratchmarova I, Olsen JV, Blagoev B,  (2017) &quot;CYLD deu