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==Data from publications== | ==Data from publications== | ||
- | The following is a list of data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list was current, as of May | + | The following is a list of data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list was current, as of May 10, 2020. |
#Lipton MS, Pasa-Tolic' L, Anderson GA, Anderson DJ, Auberry DL, Battista JR, Daly MJ, Fredrickson J, Hixson KK, Kostandarithes H, Masselon C, Markillie LM, Moore RJ, Romine MF, Shen Y, Stritmatter E, Tolic' N, Udseth HR, Venkateswaran A, Wong KK, Zhao R, Smith RD, (2002) "Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags." <i>Proc Natl Acad Sci U S A</i> <b>99</b>(17):11049–54; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/12177431 12177431]; doi: [https://dx.doi.org/10.1073/pnas.172170199 10.1073/pnas.172170199]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/12177431 498]. | #Lipton MS, Pasa-Tolic' L, Anderson GA, Anderson DJ, Auberry DL, Battista JR, Daly MJ, Fredrickson J, Hixson KK, Kostandarithes H, Masselon C, Markillie LM, Moore RJ, Romine MF, Shen Y, Stritmatter E, Tolic' N, Udseth HR, Venkateswaran A, Wong KK, Zhao R, Smith RD, (2002) "Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags." <i>Proc Natl Acad Sci U S A</i> <b>99</b>(17):11049–54; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/12177431 12177431]; doi: [https://dx.doi.org/10.1073/pnas.172170199 10.1073/pnas.172170199]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/12177431 498]. | ||
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#Bland C, Bellanger L, Armengaud J, (2014) "Magnetic immunoaffinity enrichment for selective capture and MS/MS analysis of N-terminal-TMPP-labeled peptides." <i>J Proteome Res</i> <b>13</b>(2):668–80; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24313271 24313271]; doi: [https://dx.doi.org/10.1021/pr400774z 10.1021/pr400774z]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24313271 9]. | #Bland C, Bellanger L, Armengaud J, (2014) "Magnetic immunoaffinity enrichment for selective capture and MS/MS analysis of N-terminal-TMPP-labeled peptides." <i>J Proteome Res</i> <b>13</b>(2):668–80; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24313271 24313271]; doi: [https://dx.doi.org/10.1021/pr400774z 10.1021/pr400774z]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24313271 9]. | ||
#Tsai CF, Hsu CC, Hung JN, Wang YT, Choong WK, Zeng MY, Lin PY, Hong RW, Sung TY, Chen YJ, (2014) "Sequential phosphoproteomic enrichment through complementary metal-directed immobilized metal ion affinity chromatography." <i>Anal Chem</i> <b>86</b>(1):685–93; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24313913 24313913]; doi: [https://dx.doi.org/10.1021/ac4031175 10.1021/ac4031175]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24313913 27]. | #Tsai CF, Hsu CC, Hung JN, Wang YT, Choong WK, Zeng MY, Lin PY, Hong RW, Sung TY, Chen YJ, (2014) "Sequential phosphoproteomic enrichment through complementary metal-directed immobilized metal ion affinity chromatography." <i>Anal Chem</i> <b>86</b>(1):685–93; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24313913 24313913]; doi: [https://dx.doi.org/10.1021/ac4031175 10.1021/ac4031175]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24313913 27]. | ||
+ | #Kennedy JJ, Abbatiello SE, Kim K, Yan P, Whiteaker JR, Lin C, Kim JS, Zhang Y, Wang X, Ivey RG, Zhao L, Min H, Lee Y, Yu MH, Yang EG, Lee C, Wang P, Rodriguez H, Kim Y, Carr SA, Paulovich AG, (2014) "Demonstrating the feasibility of large-scale development of standardized assays to quantify human proteins." <i>Nat Methods</i> <b>11</b>(2):149–55; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24317253 24317253]; doi: [https://dx.doi.org/10.1038/nmeth.2763 10.1038/nmeth.2763]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24317253 221]. | ||
#Kao L, Wang YT, Chen YC, Tseng SF, Jhang JC, Chen YJ, Teng SC, (2014) "Global analysis of cdc14 dephosphorylation sites reveals essential regulatory role in mitosis and cytokinesis." <i>Mol Cell Proteomics</i> <b>13</b>(2):594–605; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24319056 24319056]; doi: [https://dx.doi.org/10.1074/mcp.M113.032680 10.1074/mcp.M113.032680]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24319056 9]. | #Kao L, Wang YT, Chen YC, Tseng SF, Jhang JC, Chen YJ, Teng SC, (2014) "Global analysis of cdc14 dephosphorylation sites reveals essential regulatory role in mitosis and cytokinesis." <i>Mol Cell Proteomics</i> <b>13</b>(2):594–605; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24319056 24319056]; doi: [https://dx.doi.org/10.1074/mcp.M113.032680 10.1074/mcp.M113.032680]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24319056 9]. | ||
#Beck F, Geiger J, Gambaryan S, Veit J, Vaudel M, Nollau P, Kohlbacher O, Martens L, Walter U, Sickmann A, Zahedi RP, (2014) "Time-resolved characterization of cAMP/PKA-dependent signaling reveals that platelet inhibition is a concerted process involving multiple signaling pathways." <i>Blood</i> <b>123</b>(5):e1–e10; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24324209 24324209]; doi: [https://dx.doi.org/10.1182/blood-2013-07-512384 10.1182/blood-2013-07-512384]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24324209 19]. | #Beck F, Geiger J, Gambaryan S, Veit J, Vaudel M, Nollau P, Kohlbacher O, Martens L, Walter U, Sickmann A, Zahedi RP, (2014) "Time-resolved characterization of cAMP/PKA-dependent signaling reveals that platelet inhibition is a concerted process involving multiple signaling pathways." <i>Blood</i> <b>123</b>(5):e1–e10; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24324209 24324209]; doi: [https://dx.doi.org/10.1182/blood-2013-07-512384 10.1182/blood-2013-07-512384]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24324209 19]. | ||
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#Han D, Jin J, Woo J, Min H, Kim Y, (2014) "Proteomic analysis of mouse astrocytes and their secretome by a combination of FASP and StageTip-based, high pH, reversed-phase fractionation." <i>Proteomics</i> <b>14</b>(13-14):1604–9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24753479 24753479]; doi: [https://dx.doi.org/10.1002/pmic.201300495 10.1002/pmic.201300495]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24753479 107]. | #Han D, Jin J, Woo J, Min H, Kim Y, (2014) "Proteomic analysis of mouse astrocytes and their secretome by a combination of FASP and StageTip-based, high pH, reversed-phase fractionation." <i>Proteomics</i> <b>14</b>(13-14):1604–9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24753479 24753479]; doi: [https://dx.doi.org/10.1002/pmic.201300495 10.1002/pmic.201300495]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24753479 107]. | ||
#Chiasserini D, van Weering JR, Piersma SR, Pham TV, Malekzadeh A, Teunissen CE, de Wit H, Jiménez CR, (2014) "Proteomic analysis of cerebrospinal fluid extracellular vesicles: a comprehensive dataset." <i>J Proteomics</i> <b>106</b>:191–204; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24769233 24769233]; doi: [https://dx.doi.org/10.1016/j.jprot.2014.04.028 10.1016/j.jprot.2014.04.028]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24769233 36]. | #Chiasserini D, van Weering JR, Piersma SR, Pham TV, Malekzadeh A, Teunissen CE, de Wit H, Jiménez CR, (2014) "Proteomic analysis of cerebrospinal fluid extracellular vesicles: a comprehensive dataset." <i>J Proteomics</i> <b>106</b>:191–204; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24769233 24769233]; doi: [https://dx.doi.org/10.1016/j.jprot.2014.04.028 10.1016/j.jprot.2014.04.028]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24769233 36]. | ||
+ | #Renvoisé M, Bonhomme L, Davanture M, Valot B, Zivy M, Lemaire C, (2014) "Quantitative variations of the mitochondrial proteome and phosphoproteome during fermentative and respiratory growth in Saccharomyces cerevisiae." <i>J Proteomics</i> <b>106</b>:140–50; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24769239 24769239]; doi: [https://dx.doi.org/10.1016/j.jprot.2014.04.022 10.1016/j.jprot.2014.04.022]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24769239 48]. | ||
#Eravci M, Sommer C, Selbach M, (2014) "IPG strip-based peptide fractionation for shotgun proteomics." <i>Methods Mol Biol</i> <b>1156</b>:67–77; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24791982 24791982]; doi: [https://dx.doi.org/10.1007/978-1-4939-0685-7_5 10.1007/978-1-4939-0685-7_5]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24791982 41]. | #Eravci M, Sommer C, Selbach M, (2014) "IPG strip-based peptide fractionation for shotgun proteomics." <i>Methods Mol Biol</i> <b>1156</b>:67–77; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24791982 24791982]; doi: [https://dx.doi.org/10.1007/978-1-4939-0685-7_5 10.1007/978-1-4939-0685-7_5]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24791982 41]. | ||
#Güther ML, Urbaniak MD, Tavendale A, Prescott A, Ferguson MA, (2014) "High-confidence glycosome proteome for procyclic form Trypanosoma brucei by epitope-tag organelle enrichment and SILAC proteomics." <i>J Proteome Res</i> <b>13</b>(6):2796–806; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24792668 24792668]; doi: [https://dx.doi.org/10.1021/pr401209w 10.1021/pr401209w]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24792668 154]. | #Güther ML, Urbaniak MD, Tavendale A, Prescott A, Ferguson MA, (2014) "High-confidence glycosome proteome for procyclic form Trypanosoma brucei by epitope-tag organelle enrichment and SILAC proteomics." <i>J Proteome Res</i> <b>13</b>(6):2796–806; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24792668 24792668]; doi: [https://dx.doi.org/10.1021/pr401209w 10.1021/pr401209w]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24792668 154]. | ||
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#Yang W, Ramachandran A, You S, Jeong H, Morley S, Mulone MD, Logvinenko T, Kim J, Hwang D, Freeman MR, Adam RM, (2014) "Integration of proteomic and transcriptomic profiles identifies a novel PDGF-MYC network in human smooth muscle cells." <i>Cell Commun Signal</i> <b>12</b>:44; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25080971 25080971]; doi: [https://dx.doi.org/10.1186/s12964-014-0044-z 10.1186/s12964-014-0044-z]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25080971 30]. | #Yang W, Ramachandran A, You S, Jeong H, Morley S, Mulone MD, Logvinenko T, Kim J, Hwang D, Freeman MR, Adam RM, (2014) "Integration of proteomic and transcriptomic profiles identifies a novel PDGF-MYC network in human smooth muscle cells." <i>Cell Commun Signal</i> <b>12</b>:44; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25080971 25080971]; doi: [https://dx.doi.org/10.1186/s12964-014-0044-z 10.1186/s12964-014-0044-z]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25080971 30]. | ||
#Labas V, Grasseau I, Cahier K, Gargaros A, Harichaux G, Teixeira-Gomes AP, Alves S, Bourin M, Gérard N, Blesbois E, (2015) "Qualitative and quantitative peptidomic and proteomic approaches to phenotyping chicken semen." <i>J Proteomics</i> <b>112</b>:313–35; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25086240 25086240]; doi: [https://dx.doi.org/10.1016/j.jprot.2014.07.024 10.1016/j.jprot.2014.07.024]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25086240 44]. | #Labas V, Grasseau I, Cahier K, Gargaros A, Harichaux G, Teixeira-Gomes AP, Alves S, Bourin M, Gérard N, Blesbois E, (2015) "Qualitative and quantitative peptidomic and proteomic approaches to phenotyping chicken semen." <i>J Proteomics</i> <b>112</b>:313–35; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25086240 25086240]; doi: [https://dx.doi.org/10.1016/j.jprot.2014.07.024 10.1016/j.jprot.2014.07.024]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25086240 44]. | ||
+ | #Berlin C, Kowalewski DJ, Schuster H, Mirza N, Walz S, Handel M, Schmid-Horch B, Salih HR, Kanz L, Rammensee HG, Stevanović S, Stickel JS, (2015) "Mapping the HLA ligandome landscape of acute myeloid leukemia: a targeted approach toward peptide-based immunotherapy." <i>Leukemia</i> <b>29</b>(3):647–59; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25092142 25092142]; doi: [https://dx.doi.org/10.1038/leu.2014.233 10.1038/leu.2014.233]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25092142 146]. | ||
#Alqahtani A, Heesom K, Bramson JL, Curiel D, Ugai H, Matthews DA, (2014) "Analysis of purified wild type and mutant adenovirus particles by SILAC based quantitative proteomics." <i>J Gen Virol</i> <b>95</b>(Pt 11):2504–11; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25096814 25096814]; doi: [https://dx.doi.org/10.1099/vir.0.068221-0 10.1099/vir.0.068221-0]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25096814 22]. | #Alqahtani A, Heesom K, Bramson JL, Curiel D, Ugai H, Matthews DA, (2014) "Analysis of purified wild type and mutant adenovirus particles by SILAC based quantitative proteomics." <i>J Gen Virol</i> <b>95</b>(Pt 11):2504–11; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25096814 25096814]; doi: [https://dx.doi.org/10.1099/vir.0.068221-0 10.1099/vir.0.068221-0]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25096814 22]. | ||
#Jin L, Huo Y, Zheng Z, Jiang X, Deng H, Chen Y, Lian Q, Ge R, Deng H, (2014) "Down-regulation of Ras-related protein Rab 5C-dependent endocytosis and glycolysis in cisplatin-resistant ovarian cancer cell lines." <i>Mol Cell Proteomics</i> <b>13</b>(11):3138–51; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25096996 25096996]; doi: [https://dx.doi.org/10.1074/mcp.M113.033217 10.1074/mcp.M113.033217]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25096996 11]. | #Jin L, Huo Y, Zheng Z, Jiang X, Deng H, Chen Y, Lian Q, Ge R, Deng H, (2014) "Down-regulation of Ras-related protein Rab 5C-dependent endocytosis and glycolysis in cisplatin-resistant ovarian cancer cell lines." <i>Mol Cell Proteomics</i> <b>13</b>(11):3138–51; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25096996 25096996]; doi: [https://dx.doi.org/10.1074/mcp.M113.033217 10.1074/mcp.M113.033217]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25096996 11]. | ||
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#Walton A, Stes E, Cybulski N, Van Bel M, Iñigo S, Durand AN, Timmerman E, Heyman J, Pauwels L, De Veylder L, Goossens A, De Smet I, Coppens F, Goormachtig S, Gevaert K, (2016) "It's Time for Some "Site"-Seeing: Novel Tools to Monitor the Ubiquitin Landscape in Arabidopsis thaliana." <i>Plant Cell</i> <b>28</b>(1):6–16; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26744219 26744219]; doi: [https://dx.doi.org/10.1105/tpc.15.00878 10.1105/tpc.15.00878]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26744219 110]. | #Walton A, Stes E, Cybulski N, Van Bel M, Iñigo S, Durand AN, Timmerman E, Heyman J, Pauwels L, De Veylder L, Goossens A, De Smet I, Coppens F, Goormachtig S, Gevaert K, (2016) "It's Time for Some "Site"-Seeing: Novel Tools to Monitor the Ubiquitin Landscape in Arabidopsis thaliana." <i>Plant Cell</i> <b>28</b>(1):6–16; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26744219 26744219]; doi: [https://dx.doi.org/10.1105/tpc.15.00878 10.1105/tpc.15.00878]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26744219 110]. | ||
#Wandinger SK, Lahortiga I, Jacobs K, Klammer M, Jordan N, Elschenbroich S, Parade M, Jacoby E, Linders JT, Brehmer D, Cools J, Daub H, (2016) "Quantitative Phosphoproteomics Analysis of ERBB3/ERBB4 Signaling." <i>PLoS One</i> <b>11</b>(1):e0146100; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26745281 26745281]; doi: [https://dx.doi.org/10.1371/journal.pone.0146100 10.1371/journal.pone.0146100]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26745281 72]. | #Wandinger SK, Lahortiga I, Jacobs K, Klammer M, Jordan N, Elschenbroich S, Parade M, Jacoby E, Linders JT, Brehmer D, Cools J, Daub H, (2016) "Quantitative Phosphoproteomics Analysis of ERBB3/ERBB4 Signaling." <i>PLoS One</i> <b>11</b>(1):e0146100; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26745281 26745281]; doi: [https://dx.doi.org/10.1371/journal.pone.0146100 10.1371/journal.pone.0146100]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26745281 72]. | ||
+ | #Finne K, Marti HP, Leh S, Skogstrand T, Vethe H, Tenstad O, Berven FS, Scherer A, Vikse BE, (2016) "Proteomic Analysis of Minimally Damaged Renal Tubular Tissue from Two-Kidney-One-Clip Hypertensive Rats Demonstrates Extensive Changes Compared to Tissue from Controls." <i>Nephron</i> <b>132</b>(1):70–80; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26745798 26745798]; doi: [https://dx.doi.org/10.1159/000442825 10.1159/000442825]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26745798 10]. | ||
#Christoforou A, Mulvey CM, Breckels LM, Geladaki A, Hurrell T, Hayward PC, Naake T, Gatto L, Viner R, Martinez Arias A, Lilley KS, (2016) "A draft map of the mouse pluripotent stem cell spatial proteome." <i>Nat Commun</i> <b>7</b>:8992; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26754106 26754106]; doi: [https://dx.doi.org/10.1038/ncomms9992 10.1038/ncomms9992]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26754106 2]. | #Christoforou A, Mulvey CM, Breckels LM, Geladaki A, Hurrell T, Hayward PC, Naake T, Gatto L, Viner R, Martinez Arias A, Lilley KS, (2016) "A draft map of the mouse pluripotent stem cell spatial proteome." <i>Nat Commun</i> <b>7</b>:8992; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26754106 26754106]; doi: [https://dx.doi.org/10.1038/ncomms9992 10.1038/ncomms9992]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26754106 2]. | ||
#Jin J, Tian R, Pasculescu A, Dai AY, Williton K, Taylor L, Savitski MM, Bantscheff M, Woodgett JR, Pawson T, Colwill K, (2016) "Mutational Analysis of Glycogen Synthase Kinase 3β Protein Kinase Together with Kinome-Wide Binding and Stability Studies Suggests Context-Dependent Recognition of Kinases by the Chaperone Heat Shock Protein 90." <i>Mol Cell Biol</i> <b>36</b>(6):1007–18; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26755559 26755559]; doi: [https://dx.doi.org/10.1128/MCB.01045-15 10.1128/MCB.01045-15]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26755559 17]. | #Jin J, Tian R, Pasculescu A, Dai AY, Williton K, Taylor L, Savitski MM, Bantscheff M, Woodgett JR, Pawson T, Colwill K, (2016) "Mutational Analysis of Glycogen Synthase Kinase 3β Protein Kinase Together with Kinome-Wide Binding and Stability Studies Suggests Context-Dependent Recognition of Kinases by the Chaperone Heat Shock Protein 90." <i>Mol Cell Biol</i> <b>36</b>(6):1007–18; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26755559 26755559]; doi: [https://dx.doi.org/10.1128/MCB.01045-15 10.1128/MCB.01045-15]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26755559 17]. | ||
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#He PH, Dong WX, Chu XL, Feng MG, Ying SH, (2016) "The cellular proteome is affected by a gelsolin (BbGEL1) during morphological transitions in aerobic surface versus liquid growth in the entomopathogenic fungus Beauveria bassiana." <i>Environ Microbiol</i> <b>18</b>(11):4153–4169; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27554994 27554994]; doi: [https://dx.doi.org/10.1111/1462-2920.13500 10.1111/1462-2920.13500]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27554994 34]. | #He PH, Dong WX, Chu XL, Feng MG, Ying SH, (2016) "The cellular proteome is affected by a gelsolin (BbGEL1) during morphological transitions in aerobic surface versus liquid growth in the entomopathogenic fungus Beauveria bassiana." <i>Environ Microbiol</i> <b>18</b>(11):4153–4169; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27554994 27554994]; doi: [https://dx.doi.org/10.1111/1462-2920.13500 10.1111/1462-2920.13500]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27554994 34]. | ||
#Viktorovskaya OV, Greco TM, Cristea IM, Thompson SR, (2016) "Identification of RNA Binding Proteins Associated with Dengue Virus RNA in Infected Cells Reveals Temporally Distinct Host Factor Requirements." <i>PLoS Negl Trop Dis</i> <b>10</b>(8):e0004921; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27556644 27556644]; doi: [https://dx.doi.org/10.1371/journal.pntd.0004921 10.1371/journal.pntd.0004921]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27556644 7]. | #Viktorovskaya OV, Greco TM, Cristea IM, Thompson SR, (2016) "Identification of RNA Binding Proteins Associated with Dengue Virus RNA in Infected Cells Reveals Temporally Distinct Host Factor Requirements." <i>PLoS Negl Trop Dis</i> <b>10</b>(8):e0004921; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27556644 27556644]; doi: [https://dx.doi.org/10.1371/journal.pntd.0004921 10.1371/journal.pntd.0004921]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27556644 7]. | ||
- | #Cassidy L, Prasse D, Linke D, Schmitz RA, Tholey A, (2016) "Combination of Bottom-up 2D-LC-MS and Semi-top-down GelFree-LC-MS Enhances Coverage of Proteome and Low Molecular Weight Short Open Reading Frame Encoded Peptides of the Archaeon Methanosarcina mazei." <i>J Proteome Res</i> <b>15</b>(10):3773–3783; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27557128 27557128]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00569 10.1021/acs.jproteome.6b00569]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27557128 | + | #Cassidy L, Prasse D, Linke D, Schmitz RA, Tholey A, (2016) "Combination of Bottom-up 2D-LC-MS and Semi-top-down GelFree-LC-MS Enhances Coverage of Proteome and Low Molecular Weight Short Open Reading Frame Encoded Peptides of the Archaeon Methanosarcina mazei." <i>J Proteome Res</i> <b>15</b>(10):3773–3783; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27557128 27557128]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00569 10.1021/acs.jproteome.6b00569]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27557128 12]. |
#Häupl B, Ihling CH, Sinz A, (2016) "Protein Interaction Network of Human Protein Kinase D2 Revealed by Chemical Cross-Linking/Mass Spectrometry." <i>J Proteome Res</i> <b>15</b>(10):3686–3699; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27559607 27559607]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00513 10.1021/acs.jproteome.6b00513]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27559607 81]. | #Häupl B, Ihling CH, Sinz A, (2016) "Protein Interaction Network of Human Protein Kinase D2 Revealed by Chemical Cross-Linking/Mass Spectrometry." <i>J Proteome Res</i> <b>15</b>(10):3686–3699; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27559607 27559607]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00513 10.1021/acs.jproteome.6b00513]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27559607 81]. | ||
#Jiang Y, Lee J, Lee JH, Lee JW, Kim JH, Choi WH, Yoo YD, Cha-Molstad H, Kim BY, Kwon YT, Noh SA, Kim KP, Lee MJ, (2016) "The arginylation branch of the N-end rule pathway positively regulates cellular autophagic flux and clearance of proteotoxic proteins." <i>Autophagy</i> <b>12</b>(11):2197–2212; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27560450 27560450]; doi: [https://dx.doi.org/10.1080/15548627.2016.1222991 10.1080/15548627.2016.1222991]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27560450 2]. | #Jiang Y, Lee J, Lee JH, Lee JW, Kim JH, Choi WH, Yoo YD, Cha-Molstad H, Kim BY, Kwon YT, Noh SA, Kim KP, Lee MJ, (2016) "The arginylation branch of the N-end rule pathway positively regulates cellular autophagic flux and clearance of proteotoxic proteins." <i>Autophagy</i> <b>12</b>(11):2197–2212; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27560450 27560450]; doi: [https://dx.doi.org/10.1080/15548627.2016.1222991 10.1080/15548627.2016.1222991]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27560450 2]. | ||
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#Jean Beltran PM, Mathias RA, Cristea IM, (2016) "A Portrait of the Human Organelle Proteome In Space and Time during Cytomegalovirus Infection." <i>Cell Syst</i> <b>3</b>(4):361–373.e6; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27641956 27641956]; doi: [https://dx.doi.org/10.1016/j.cels.2016.08.012 10.1016/j.cels.2016.08.012]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27641956 45]. | #Jean Beltran PM, Mathias RA, Cristea IM, (2016) "A Portrait of the Human Organelle Proteome In Space and Time during Cytomegalovirus Infection." <i>Cell Syst</i> <b>3</b>(4):361–373.e6; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27641956 27641956]; doi: [https://dx.doi.org/10.1016/j.cels.2016.08.012 10.1016/j.cels.2016.08.012]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27641956 45]. | ||
#Athanason MG, Stevens SM Jr, Burkhardt BR, (2016) "Hepatic SILAC proteomic data from PANDER transgenic model." <i>Data Brief</i> <b>9</b>:159–62; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27642623 27642623]; doi: [https://dx.doi.org/10.1016/j.dib.2016.08.017 10.1016/j.dib.2016.08.017]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27642623 18]. | #Athanason MG, Stevens SM Jr, Burkhardt BR, (2016) "Hepatic SILAC proteomic data from PANDER transgenic model." <i>Data Brief</i> <b>9</b>:159–62; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27642623 27642623]; doi: [https://dx.doi.org/10.1016/j.dib.2016.08.017 10.1016/j.dib.2016.08.017]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27642623 18]. | ||
+ | #Bian Y, Li L, Dong M, Liu X, Kaneko T, Cheng K, Liu H, Voss C, Cao X, Wang Y, Litchfield D, Ye M, Li SS, Zou H, (2016) "Ultra-deep tyrosine phosphoproteomics enabled by a phosphotyrosine superbinder." <i>Nat Chem Biol</i> <b>12</b>(11):959–966; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27642862 27642862]; doi: [https://dx.doi.org/10.1038/nchembio.2178 10.1038/nchembio.2178]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27642862 215]. | ||
#Vu LD, Stes E, Van Bel M, Nelissen H, Maddelein D, Inzé D, Coppens F, Martens L, Gevaert K, De Smet I, (2016) "Up-to-Date Workflow for Plant (Phospho)proteomics Identifies Differential Drought-Responsive Phosphorylation Events in Maize Leaves." <i>J Proteome Res</i> <b>15</b>(12):4304–4317; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27643528 27643528]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00348 10.1021/acs.jproteome.6b00348]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27643528 28]. | #Vu LD, Stes E, Van Bel M, Nelissen H, Maddelein D, Inzé D, Coppens F, Martens L, Gevaert K, De Smet I, (2016) "Up-to-Date Workflow for Plant (Phospho)proteomics Identifies Differential Drought-Responsive Phosphorylation Events in Maize Leaves." <i>J Proteome Res</i> <b>15</b>(12):4304–4317; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27643528 27643528]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00348 10.1021/acs.jproteome.6b00348]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27643528 28]. | ||
#Kubicek-Sutherland JZ, Lofton H, Vestergaard M, Hjort K, Ingmer H, Andersson DI, (2017) "Antimicrobial peptide exposure selects for Staphylococcus aureus resistance to human defence peptides." <i>J Antimicrob Chemother</i> <b>72</b>(1):115–127; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27650186 27650186]; doi: [https://dx.doi.org/10.1093/jac/dkw381 10.1093/jac/dkw381]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27650186 42]. | #Kubicek-Sutherland JZ, Lofton H, Vestergaard M, Hjort K, Ingmer H, Andersson DI, (2017) "Antimicrobial peptide exposure selects for Staphylococcus aureus resistance to human defence peptides." <i>J Antimicrob Chemother</i> <b>72</b>(1):115–127; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27650186 27650186]; doi: [https://dx.doi.org/10.1093/jac/dkw381 10.1093/jac/dkw381]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27650186 42]. | ||
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#Chymkowitch P, Nguéa P A, Aanes H, Robertson J, Klungland A, Enserink JM, (2017) "TORC1-dependent sumoylation of Rpc82 promotes RNA polymerase III assembly and activity." <i>Proc Natl Acad Sci U S A</i> <b>114</b>(5):1039–1044; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28096404 28096404]; doi: [https://dx.doi.org/10.1073/pnas.1615093114 10.1073/pnas.1615093114]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28096404 21]. | #Chymkowitch P, Nguéa P A, Aanes H, Robertson J, Klungland A, Enserink JM, (2017) "TORC1-dependent sumoylation of Rpc82 promotes RNA polymerase III assembly and activity." <i>Proc Natl Acad Sci U S A</i> <b>114</b>(5):1039–1044; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28096404 28096404]; doi: [https://dx.doi.org/10.1073/pnas.1615093114 10.1073/pnas.1615093114]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28096404 21]. | ||
#Reckel S, Hamelin R, Georgeon S, Armand F, Jolliet Q, Chiappe D, Moniatte M, Hantschel O, (2017) "Differential signaling networks of Bcr-Abl p210 and p190 kinases in leukemia cells defined by functional proteomics." <i>Leukemia</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28111465 28111465]; doi: [https://dx.doi.org/10.1038/leu.2017.36 10.1038/leu.2017.36]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28111465 10]. | #Reckel S, Hamelin R, Georgeon S, Armand F, Jolliet Q, Chiappe D, Moniatte M, Hantschel O, (2017) "Differential signaling networks of Bcr-Abl p210 and p190 kinases in leukemia cells defined by functional proteomics." <i>Leukemia</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28111465 28111465]; doi: [https://dx.doi.org/10.1038/leu.2017.36 10.1038/leu.2017.36]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28111465 10]. | ||
+ | #Tsiatsiani L, Giansanti P, Scheltema RA, van den Toorn H, Overall CM, Altelaar AF, Heck AJ, (2017) "Opposite Electron-Transfer Dissociation and Higher-Energy Collisional Dissociation Fragmentation Characteristics of Proteolytic K/R(X)<sub>n</sub> and (X)<sub>n</sub>K/R Peptides Provide Benefits for Peptide Sequencing in Proteomics and Phosphoproteomics." <i>J Proteome Res</i> <b>16</b>(2):852–861; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28111955 28111955]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00825 10.1021/acs.jproteome.6b00825]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28111955 28]. | ||
#Hendriks IA, Lyon D, Young C, Jensen LJ, Vertegaal AC, Nielsen ML, (2017) "Site-specific mapping of the human SUMO proteome reveals co-modification with phosphorylation." <i>Nat Struct Mol Biol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28112733 28112733]; doi: [https://dx.doi.org/10.1038/nsmb.3366 10.1038/nsmb.3366]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28112733 311]. | #Hendriks IA, Lyon D, Young C, Jensen LJ, Vertegaal AC, Nielsen ML, (2017) "Site-specific mapping of the human SUMO proteome reveals co-modification with phosphorylation." <i>Nat Struct Mol Biol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28112733 28112733]; doi: [https://dx.doi.org/10.1038/nsmb.3366 10.1038/nsmb.3366]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28112733 311]. | ||
#Badalato N, Guillot A, Sabarly V, Dubois M, Pourette N, Pontoire B, Robert P, Bridier A, Monnet V, Sousa DZ, Durand S, Mazéas L, Buléon A, Bouchez T, Mortha G, Bize A, (2017) "Whole Proteome Analyses on Ruminiclostridium cellulolyticum Show a Modulation of the Cellulolysis Machinery in Response to Cellulosic Materials with Subtle Differences in Chemical and Structural Properties." <i>PLoS One</i> <b>12</b>(1):e0170524; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28114419 28114419]; doi: [https://dx.doi.org/10.1371/journal.pone.0170524 10.1371/journal.pone.0170524]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28114419 24]. | #Badalato N, Guillot A, Sabarly V, Dubois M, Pourette N, Pontoire B, Robert P, Bridier A, Monnet V, Sousa DZ, Durand S, Mazéas L, Buléon A, Bouchez T, Mortha G, Bize A, (2017) "Whole Proteome Analyses on Ruminiclostridium cellulolyticum Show a Modulation of the Cellulolysis Machinery in Response to Cellulosic Materials with Subtle Differences in Chemical and Structural Properties." <i>PLoS One</i> <b>12</b>(1):e0170524; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28114419 28114419]; doi: [https://dx.doi.org/10.1371/journal.pone.0170524 10.1371/journal.pone.0170524]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28114419 24]. | ||
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#Clulow JA, Storck EM, Lanyon-Hogg T, Kalesh KA, Jones LH, Tate EW, (2017) "Competition-based, quantitative chemical proteomics in breast cancer cells identifies new target profiles for sulforaphane." <i>Chem Commun (Camb)</i> <b>53</b>(37):5182–5185; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28439590 28439590]; doi: [https://dx.doi.org/10.1039/c6cc08797c 10.1039/c6cc08797c]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28439590 32]. | #Clulow JA, Storck EM, Lanyon-Hogg T, Kalesh KA, Jones LH, Tate EW, (2017) "Competition-based, quantitative chemical proteomics in breast cancer cells identifies new target profiles for sulforaphane." <i>Chem Commun (Camb)</i> <b>53</b>(37):5182–5185; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28439590 28439590]; doi: [https://dx.doi.org/10.1039/c6cc08797c 10.1039/c6cc08797c]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28439590 32]. | ||
#Yeung ATY, Hale C, Lee AH, Gill EE, Bushell W, Parry-Smith D, Goulding D, Pickard D, Roumeliotis T, Choudhary J, Thomson N, Skarnes WC, Dougan G, Hancock REW, (2017) "Exploiting induced pluripotent stem cell-derived macrophages to unravel host factors influencing Chlamydia trachomatis pathogenesis." <i>Nat Commun</i> <b>8</b>:15013; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28440293 28440293]; doi: [https://dx.doi.org/10.1038/ncomms15013 10.1038/ncomms15013]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28440293 1]. | #Yeung ATY, Hale C, Lee AH, Gill EE, Bushell W, Parry-Smith D, Goulding D, Pickard D, Roumeliotis T, Choudhary J, Thomson N, Skarnes WC, Dougan G, Hancock REW, (2017) "Exploiting induced pluripotent stem cell-derived macrophages to unravel host factors influencing Chlamydia trachomatis pathogenesis." <i>Nat Commun</i> <b>8</b>:15013; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28440293 28440293]; doi: [https://dx.doi.org/10.1038/ncomms15013 10.1038/ncomms15013]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28440293 1]. | ||
+ | #Labots M, van der Mijn JC, Beekhof R, Piersma SR, de Goeij-de Haas RR, Pham TV, Knol JC, Dekker H, van Grieken NCT, Verheul HMW, Jiménez CR, (2017) "Phosphotyrosine-based-phosphoproteomics scaled-down to biopsy level for analysis of individual tumor biology and treatment selection." <i>J Proteomics</i> <b>162</b>:99–107; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28442448 28442448]; doi: [https://dx.doi.org/10.1016/j.jprot.2017.04.014 10.1016/j.jprot.2017.04.014]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28442448 40]. | ||
#Arntzen MØ, Várnai A, Mackie RI, Eijsink VGH, Pope PB, (2017) "Outer membrane vesicles from Fibrobacter succinogenes S85 contain an array of carbohydrate-active enzymes with versatile polysaccharide-degrading capacity." <i>Environ Microbiol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28447389 28447389]; doi: [https://dx.doi.org/10.1111/1462-2920.13770 10.1111/1462-2920.13770]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28447389 20]. | #Arntzen MØ, Várnai A, Mackie RI, Eijsink VGH, Pope PB, (2017) "Outer membrane vesicles from Fibrobacter succinogenes S85 contain an array of carbohydrate-active enzymes with versatile polysaccharide-degrading capacity." <i>Environ Microbiol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28447389 28447389]; doi: [https://dx.doi.org/10.1111/1462-2920.13770 10.1111/1462-2920.13770]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28447389 20]. | ||
#Nguyen EV, Huhtinen K, Goo YA, Kaipio K, Andersson N, Rantanen V, Hynninen J, Lahesmaa R, Carpen O, Goodlett DR, (2017) "Hyper-phosphorylation of Sequestosome-1 distinguishes resistance to cisplatin in patient derived high grade serous ovarian cancer cells." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28455291 28455291]; doi: [https://dx.doi.org/10.1074/mcp.M116.058321 10.1074/mcp.M116.058321]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28455291 60]. | #Nguyen EV, Huhtinen K, Goo YA, Kaipio K, Andersson N, Rantanen V, Hynninen J, Lahesmaa R, Carpen O, Goodlett DR, (2017) "Hyper-phosphorylation of Sequestosome-1 distinguishes resistance to cisplatin in patient derived high grade serous ovarian cancer cells." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28455291 28455291]; doi: [https://dx.doi.org/10.1074/mcp.M116.058321 10.1074/mcp.M116.058321]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28455291 60]. | ||
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#Ayre DC, Chute IC, Joy AP, Barnett DA, Hogan AM, Grüll MP, Peña-Castillo L, Lang AS, Lewis SM, Christian SL, (2017) "CD24 induces changes to the surface receptors of B cell microvesicles with variable effects on their RNA and protein cargo." <i>Sci Rep</i> <b>7</b>(1):8642; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28819186 28819186]; doi: [https://dx.doi.org/10.1038/s41598-017-08094-8 10.1038/s41598-017-08094-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28819186 146]. | #Ayre DC, Chute IC, Joy AP, Barnett DA, Hogan AM, Grüll MP, Peña-Castillo L, Lang AS, Lewis SM, Christian SL, (2017) "CD24 induces changes to the surface receptors of B cell microvesicles with variable effects on their RNA and protein cargo." <i>Sci Rep</i> <b>7</b>(1):8642; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28819186 28819186]; doi: [https://dx.doi.org/10.1038/s41598-017-08094-8 10.1038/s41598-017-08094-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28819186 146]. | ||
#Singh H, Yu Y, Suh MJ, Torralba MG, Stenzel RD, Tovchigrechko A, Thovarai V, Harkins DM, Rajagopala SV, Osborne W, Cogen FR, Kaplowitz PB, Nelson KE, Madupu R, Pieper R, (2017) "Type 1 Diabetes: Urinary Proteomics and Protein Network Analysis Support Perturbation of Lysosomal Function." <i>Theranostics</i> <b>7</b>(10):2704–2717; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28819457 28819457]; doi: [https://dx.doi.org/10.7150/thno.19679 10.7150/thno.19679]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28819457 663]. | #Singh H, Yu Y, Suh MJ, Torralba MG, Stenzel RD, Tovchigrechko A, Thovarai V, Harkins DM, Rajagopala SV, Osborne W, Cogen FR, Kaplowitz PB, Nelson KE, Madupu R, Pieper R, (2017) "Type 1 Diabetes: Urinary Proteomics and Protein Network Analysis Support Perturbation of Lysosomal Function." <i>Theranostics</i> <b>7</b>(10):2704–2717; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28819457 28819457]; doi: [https://dx.doi.org/10.7150/thno.19679 10.7150/thno.19679]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28819457 663]. | ||
+ | #Shen H, Lim C, Schwartz AG, Andreev-Andrievskiy A, Deymier AC, Thomopoulos S, (2017) "Effects of spaceflight on the muscles of the murine shoulder." <i>FASEB J</i> <b>31</b>(12):5466–5477; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28821629 28821629]; doi: [https://dx.doi.org/10.1096/fj.201700320R 10.1096/fj.201700320R]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28821629 14]. | ||
#Hung CL, Pan SH, Han CL, Chang CW, Hsu YL, Su CH, Shih SC, Lai YJ, Chiang Chiau JS, Yeh HI, Liu CY, Lee HC, Lam CSP, (2017) "Membrane Proteomics of Impaired Energetics and Cytoskeletal Disorganization in Elderly Diet-Induced Diabetic Mice." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28823169 28823169]; doi: [https://dx.doi.org/10.1021/acs.jproteome.7b00148 10.1021/acs.jproteome.7b00148]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28823169 14]. | #Hung CL, Pan SH, Han CL, Chang CW, Hsu YL, Su CH, Shih SC, Lai YJ, Chiang Chiau JS, Yeh HI, Liu CY, Lee HC, Lam CSP, (2017) "Membrane Proteomics of Impaired Energetics and Cytoskeletal Disorganization in Elderly Diet-Induced Diabetic Mice." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28823169 28823169]; doi: [https://dx.doi.org/10.1021/acs.jproteome.7b00148 10.1021/acs.jproteome.7b00148]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28823169 14]. | ||
#Fu L, Liu KK, Sun MA, Tian CP, Sun R, Morales Betanzos C, Tallman KA, Porter NA, Yang Y, Guo DJ, Liebler DC, Yang J, (2017) "Systematic and quantitative assessment of hydrogen peroxide reactivity with cysteines across human proteomes." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28827280 28827280]; doi: [https://dx.doi.org/10.1074/mcp.RA117.000108 10.1074/mcp.RA117.000108]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28827280 12]. | #Fu L, Liu KK, Sun MA, Tian CP, Sun R, Morales Betanzos C, Tallman KA, Porter NA, Yang Y, Guo DJ, Liebler DC, Yang J, (2017) "Systematic and quantitative assessment of hydrogen peroxide reactivity with cysteines across human proteomes." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28827280 28827280]; doi: [https://dx.doi.org/10.1074/mcp.RA117.000108 10.1074/mcp.RA117.000108]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28827280 12]. | ||
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#Wildburger NC, Esparza TJ, LeDuc RD, Fellers RT, Thomas PM, Cairns NJ, Kelleher NL, Bateman RJ, Brody DL, (2017) "Diversity of Amyloid-beta Proteoforms in the Alzheimer's Disease Brain." <i>Sci Rep</i> <b>7</b>(1):9520; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28842697 28842697]; doi: [https://dx.doi.org/10.1038/s41598-017-10422-x 10.1038/s41598-017-10422-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28842697 22]. | #Wildburger NC, Esparza TJ, LeDuc RD, Fellers RT, Thomas PM, Cairns NJ, Kelleher NL, Bateman RJ, Brody DL, (2017) "Diversity of Amyloid-beta Proteoforms in the Alzheimer's Disease Brain." <i>Sci Rep</i> <b>7</b>(1):9520; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28842697 28842697]; doi: [https://dx.doi.org/10.1038/s41598-017-10422-x 10.1038/s41598-017-10422-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28842697 22]. | ||
#Andersen PR, Tirian L, Vunjak M, Brennecke J, (2017) "A heterochromatin-dependent transcription machinery drives piRNA expression." <i>Nature</i> <b>549</b>(7670):54–59; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28847004 28847004]; doi: [https://dx.doi.org/10.1038/nature23482 10.1038/nature23482]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28847004 46]. | #Andersen PR, Tirian L, Vunjak M, Brennecke J, (2017) "A heterochromatin-dependent transcription machinery drives piRNA expression." <i>Nature</i> <b>549</b>(7670):54–59; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28847004 28847004]; doi: [https://dx.doi.org/10.1038/nature23482 10.1038/nature23482]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28847004 46]. | ||
+ | #Guo J, Wang P, Cheng Q, Sun L, Wang H, Wang Y, Kao L, Li Y, Qiu T, Yang W, Shen H, (2017) "Proteomic analysis reveals strong mitochondrial involvement in cytoplasmic male sterility of pepper (Capsicum annuum L.)." <i>J Proteomics</i> <b>168</b>:15–27; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28847649 28847649]; doi: [https://dx.doi.org/10.1016/j.jprot.2017.08.013 10.1016/j.jprot.2017.08.013]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28847649 6]. | ||
#Mohl BP, Emmott E, Roy P, (2017) "Phosphoproteomic analysis reveals the importance of kinase regulation during orbivirus infection." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28851738 28851738]; doi: [https://dx.doi.org/10.1074/mcp.M117.067355 10.1074/mcp.M117.067355]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28851738 6]. | #Mohl BP, Emmott E, Roy P, (2017) "Phosphoproteomic analysis reveals the importance of kinase regulation during orbivirus infection." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28851738 28851738]; doi: [https://dx.doi.org/10.1074/mcp.M117.067355 10.1074/mcp.M117.067355]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28851738 6]. | ||
#Merkley ED, Sego LH, Lin A, Leiser OP, Kaiser BLD, Adkins JN, Keim PS, Wagner DM, Kreuzer HW, (2017) "Protein abundances can distinguish between naturally-occurring and laboratory strains of Yersinia pestis, the causative agent of plague." <i>PLoS One</i> <b>12</b>(8):e0183478; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28854255 28854255]; doi: [https://dx.doi.org/10.1371/journal.pone.0183478 10.1371/journal.pone.0183478]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28854255 343]. | #Merkley ED, Sego LH, Lin A, Leiser OP, Kaiser BLD, Adkins JN, Keim PS, Wagner DM, Kreuzer HW, (2017) "Protein abundances can distinguish between naturally-occurring and laboratory strains of Yersinia pestis, the causative agent of plague." <i>PLoS One</i> <b>12</b>(8):e0183478; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28854255 28854255]; doi: [https://dx.doi.org/10.1371/journal.pone.0183478 10.1371/journal.pone.0183478]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28854255 343]. | ||
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#Avenarius MR, Krey JF, Dumont RA, Morgan CP, Benson CB, Vijayakumar S, Cunningham CL, Scheffer DI, Corey DP, Müller U, Jones SM, Barr-Gillespie PG, (2017) "Heterodimeric capping protein is required for stereocilia length and width regulation." <i>J Cell Biol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28899994 28899994]; doi: [https://dx.doi.org/10.1083/jcb.201704171 10.1083/jcb.201704171]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28899994 52]. | #Avenarius MR, Krey JF, Dumont RA, Morgan CP, Benson CB, Vijayakumar S, Cunningham CL, Scheffer DI, Corey DP, Müller U, Jones SM, Barr-Gillespie PG, (2017) "Heterodimeric capping protein is required for stereocilia length and width regulation." <i>J Cell Biol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28899994 28899994]; doi: [https://dx.doi.org/10.1083/jcb.201704171 10.1083/jcb.201704171]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28899994 52]. | ||
#Rowland EA, Greco TM, Snowden CK, McCabe AL, Silhavy TJ, Cristea IM, (2017) "Sirtuin Lipoamidase Activity Is Conserved in Bacteria as a Regulator of Metabolic Enzyme Complexes." <i>MBio</i> <b>8</b>(5):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28900027 28900027]; doi: [https://dx.doi.org/10.1128/mBio.01096-17 10.1128/mBio.01096-17]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28900027 2]. | #Rowland EA, Greco TM, Snowden CK, McCabe AL, Silhavy TJ, Cristea IM, (2017) "Sirtuin Lipoamidase Activity Is Conserved in Bacteria as a Regulator of Metabolic Enzyme Complexes." <i>MBio</i> <b>8</b>(5):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28900027 28900027]; doi: [https://dx.doi.org/10.1128/mBio.01096-17 10.1128/mBio.01096-17]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28900027 2]. | ||
+ | #Midgett M, López CS, David L, Maloyan A, Rugonyi S, (2017) "Increased Hemodynamic Load in Early Embryonic Stages Alters Myofibril and Mitochondrial Organization in the Myocardium." <i>Front Physiol</i> <b>8</b>:631; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28912723 28912723]; doi: [https://dx.doi.org/10.3389/fphys.2017.00631 10.3389/fphys.2017.00631]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28912723 1]. | ||
#Hospital MA, Jacquel A, Mazed F, Saland E, Larrue C, Mondesir J, Birsen R, Green AS, Lambert M, Sujobert P, Gautier EF, Salnot V, Le Gall M, Decroocq J, Poulain L, Jacque N, Fontenay M, Kosmider O, Récher C, Auberger P, Mayeux P, Bouscary D, Sarry JE, Tamburini J, (2017) "RSK2 is a new Pim2 target with pro-survival functions in FLT3-ITD-positive acute myeloid leukemia." <i>Leukemia</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28914261 28914261]; doi: [https://dx.doi.org/10.1038/leu.2017.284 10.1038/leu.2017.284]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28914261 17]. | #Hospital MA, Jacquel A, Mazed F, Saland E, Larrue C, Mondesir J, Birsen R, Green AS, Lambert M, Sujobert P, Gautier EF, Salnot V, Le Gall M, Decroocq J, Poulain L, Jacque N, Fontenay M, Kosmider O, Récher C, Auberger P, Mayeux P, Bouscary D, Sarry JE, Tamburini J, (2017) "RSK2 is a new Pim2 target with pro-survival functions in FLT3-ITD-positive acute myeloid leukemia." <i>Leukemia</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28914261 28914261]; doi: [https://dx.doi.org/10.1038/leu.2017.284 10.1038/leu.2017.284]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28914261 17]. | ||
#Tain LS, Sehlke R, Jain C, Chokkalingam M, Nagaraj N, Essers P, Rassner M, Grönke S, Froelich J, Dieterich C, Mann M, Alic N, Beyer A, Partridge L, (2017) "A proteomic atlas of insulin signalling reveals tissue-specific mechanisms of longevity assurance." <i>Mol Syst Biol</i> <b>13</b>(9):939; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28916541 28916541]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28916541 92]. | #Tain LS, Sehlke R, Jain C, Chokkalingam M, Nagaraj N, Essers P, Rassner M, Grönke S, Froelich J, Dieterich C, Mann M, Alic N, Beyer A, Partridge L, (2017) "A proteomic atlas of insulin signalling reveals tissue-specific mechanisms of longevity assurance." <i>Mol Syst Biol</i> <b>13</b>(9):939; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28916541 28916541]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28916541 92]. | ||
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#Grenga L, Chandra G, Saalbach G, Galmozzi CV, Kramer G, Malone JG, (2017) "Analyzing the Complex Regulatory Landscape of Hfq - an Integrative, Multi-Omics Approach." <i>Front Microbiol</i> <b>8</b>:1784; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29033902 29033902]; doi: [https://dx.doi.org/10.3389/fmicb.2017.01784 10.3389/fmicb.2017.01784]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29033902 1]. | #Grenga L, Chandra G, Saalbach G, Galmozzi CV, Kramer G, Malone JG, (2017) "Analyzing the Complex Regulatory Landscape of Hfq - an Integrative, Multi-Omics Approach." <i>Front Microbiol</i> <b>8</b>:1784; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29033902 29033902]; doi: [https://dx.doi.org/10.3389/fmicb.2017.01784 10.3389/fmicb.2017.01784]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29033902 1]. | ||
#Kugeratski FG, Batista M, Lima CVP, Neilson LJ, da Cunha ES, de Godoy LMF, Zanivan S, Krieger MA, Marchini FK, (2017) "The mitogen-activated protein kinase kinase 5 regulates the proliferation and biosynthetic processes in procyclic forms of Trypanosoma brucei." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29043805 29043805]; doi: [https://dx.doi.org/10.1021/acs.jproteome.7b00415 10.1021/acs.jproteome.7b00415]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29043805 15]. | #Kugeratski FG, Batista M, Lima CVP, Neilson LJ, da Cunha ES, de Godoy LMF, Zanivan S, Krieger MA, Marchini FK, (2017) "The mitogen-activated protein kinase kinase 5 regulates the proliferation and biosynthetic processes in procyclic forms of Trypanosoma brucei." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29043805 29043805]; doi: [https://dx.doi.org/10.1021/acs.jproteome.7b00415 10.1021/acs.jproteome.7b00415]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29043805 15]. | ||
+ | #Bartosova M, Schaefer B, Bermejo JL, Tarantino S, Lasitschka F, Macher-Goeppinger S, Sinn P, Warady BA, Zaloszyc A, Parapatics K, Májek P, Bennett KL, Oh J, Aufricht C, Schaefer F, Kratochwill K, Schmitt CP, (2018) "Complement Activation in Peritoneal Dialysis-Induced Arteriolopathy." <i>J Am Soc Nephrol</i> <b>29</b>(1):268–282; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29046343 29046343]; doi: [https://dx.doi.org/10.1681/ASN.2017040436 10.1681/ASN.2017040436]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29046343 2]. | ||
#Fabrik I, Link M, Putzova D, Plzakova L, Lubovska Z, Philimonenko V, Pavkova I, Rehulka P, Krocova Z, Hozak P, Santic M, Stulik J, (2017) "<b>The early dendritic cell signaling induced by virulent <i>Francisella</i><i>tularensis</i> strain occurs in phases and involves the activation of ERKs and p38 in the later stage.</b>" <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29046388 29046388]; doi: [https://dx.doi.org/10.1074/mcp.RA117.000160 10.1074/mcp.RA117.000160]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29046388 364]. | #Fabrik I, Link M, Putzova D, Plzakova L, Lubovska Z, Philimonenko V, Pavkova I, Rehulka P, Krocova Z, Hozak P, Santic M, Stulik J, (2017) "<b>The early dendritic cell signaling induced by virulent <i>Francisella</i><i>tularensis</i> strain occurs in phases and involves the activation of ERKs and p38 in the later stage.</b>" <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29046388 29046388]; doi: [https://dx.doi.org/10.1074/mcp.RA117.000160 10.1074/mcp.RA117.000160]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29046388 364]. | ||
#Raschdorf O, Bonn F, Zeytuni N, Zarivach R, Becher D, Schüler D, (2017) "A quantitative assessment of the membrane-integral sub-proteome of a bacterial magnetic organelle." <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29054541 29054541]; doi: [https://dx.doi.org/10.1016/j.jprot.2017.10.007 10.1016/j.jprot.2017.10.007]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29054541 127]. | #Raschdorf O, Bonn F, Zeytuni N, Zarivach R, Becher D, Schüler D, (2017) "A quantitative assessment of the membrane-integral sub-proteome of a bacterial magnetic organelle." <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29054541 29054541]; doi: [https://dx.doi.org/10.1016/j.jprot.2017.10.007 10.1016/j.jprot.2017.10.007]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29054541 127]. | ||
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#Geis-Asteggiante L, Belew AT, Clements VK, Edwards NJ, Ostrand-Rosenberg S, El-Sayed NM, Fenselau C, (2017) "Differential content of proteins, mRNAs, and miRNAs suggests that MDSC and their exosomes may mediate distinct immune suppressive functions." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29139296 29139296]; doi: [https://dx.doi.org/10.1021/acs.jproteome.7b00646 10.1021/acs.jproteome.7b00646]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29139296 60]. | #Geis-Asteggiante L, Belew AT, Clements VK, Edwards NJ, Ostrand-Rosenberg S, El-Sayed NM, Fenselau C, (2017) "Differential content of proteins, mRNAs, and miRNAs suggests that MDSC and their exosomes may mediate distinct immune suppressive functions." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29139296 29139296]; doi: [https://dx.doi.org/10.1021/acs.jproteome.7b00646 10.1021/acs.jproteome.7b00646]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29139296 60]. | ||
#Worzfeld T, Finkernagel F, Reinartz S, Konzer A, Adhikary T, Nist A, Stiewe T, Wagner U, Looso M, Graumann J, Müller R, (2017) "Proteotranscriptomics Reveal Signaling Networks in the Ovarian Cancer Microenvironment." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29141914 29141914]; doi: [https://dx.doi.org/10.1074/mcp.RA117.000400 10.1074/mcp.RA117.000400]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29141914 121]. | #Worzfeld T, Finkernagel F, Reinartz S, Konzer A, Adhikary T, Nist A, Stiewe T, Wagner U, Looso M, Graumann J, Müller R, (2017) "Proteotranscriptomics Reveal Signaling Networks in the Ovarian Cancer Microenvironment." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29141914 29141914]; doi: [https://dx.doi.org/10.1074/mcp.RA117.000400 10.1074/mcp.RA117.000400]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29141914 121]. | ||
+ | #Raffel S, Falcone M, Kneisel N, Hansson J, Wang W, Lutz C, Bullinger L, Poschet G, Nonnenmacher Y, Barnert A, Bahr C, Zeisberger P, Przybylla A, Sohn M, Tönjes M, Erez A, Adler L, Jensen P, Scholl C, Fröhling S, Cocciardi S, Wuchter P, Thiede C, Flörcken A, Westermann J, Ehninger G, Lichter P, Hiller K, Hell R, Herrmann C, Ho AD, Krijgsveld J, Radlwimmer B, Trumpp A, (2017) "BCAT1 restricts αKG levels in AML stem cells leading to IDHmut-like DNA hypermethylation." <i>Nature</i> <b>551</b>(7680):384–388; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29144447 29144447]; doi: [https://dx.doi.org/10.1038/nature24294 10.1038/nature24294]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29144447 10]. | ||
#Yilmaz O, Patinote A, Nguyen TV, Com E, Lavigne R, Pineau C, Sullivan CV, Bobe J, (2017) "Scrambled eggs: Proteomic portraits and novel biomarkers of egg quality in zebrafish (Danio rerio)." <i>PLoS One</i> <b>12</b>(11):e0188084; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29145436 29145436]; doi: [https://dx.doi.org/10.1371/journal.pone.0188084 10.1371/journal.pone.0188084]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29145436 57]. | #Yilmaz O, Patinote A, Nguyen TV, Com E, Lavigne R, Pineau C, Sullivan CV, Bobe J, (2017) "Scrambled eggs: Proteomic portraits and novel biomarkers of egg quality in zebrafish (Danio rerio)." <i>PLoS One</i> <b>12</b>(11):e0188084; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29145436 29145436]; doi: [https://dx.doi.org/10.1371/journal.pone.0188084 10.1371/journal.pone.0188084]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29145436 57]. | ||
#Cherry JD, Zeineddin A, Dammer EB, Webster JA, Duong D, Seyfried NT, Levey AI, Alvarez VE, Huber BR, Stein TD, Kiernan PT, McKee AC, Lah JJ, Hales CM, (2017) "Characterization of Detergent Insoluble Proteome in Chronic Traumatic Encephalopathy." <i>J Neuropathol Exp Neurol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29145658 29145658]; doi: [https://dx.doi.org/10.1093/jnen/nlx100 10.1093/jnen/nlx100]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29145658 4]. | #Cherry JD, Zeineddin A, Dammer EB, Webster JA, Duong D, Seyfried NT, Levey AI, Alvarez VE, Huber BR, Stein TD, Kiernan PT, McKee AC, Lah JJ, Hales CM, (2017) "Characterization of Detergent Insoluble Proteome in Chronic Traumatic Encephalopathy." <i>J Neuropathol Exp Neurol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29145658 29145658]; doi: [https://dx.doi.org/10.1093/jnen/nlx100 10.1093/jnen/nlx100]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29145658 4]. | ||
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#Abdelmegid S, Murugaiyan J, Abo-Ismail M, Caswell JL, Kelton D, Kirby GM, (2017) "Identification of Host Defense-Related Proteins Using Label-Free Quantitative Proteomic Analysis of Milk Whey from Cows with Staphylococcus aureus Subclinical Mastitis." <i>Int J Mol Sci</i> <b>19</b>(1):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29283389 29283389]; doi: [https://dx.doi.org/10.3390/ijms19010078 10.3390/ijms19010078]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29283389 11]. | #Abdelmegid S, Murugaiyan J, Abo-Ismail M, Caswell JL, Kelton D, Kirby GM, (2017) "Identification of Host Defense-Related Proteins Using Label-Free Quantitative Proteomic Analysis of Milk Whey from Cows with Staphylococcus aureus Subclinical Mastitis." <i>Int J Mol Sci</i> <b>19</b>(1):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29283389 29283389]; doi: [https://dx.doi.org/10.3390/ijms19010078 10.3390/ijms19010078]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29283389 11]. | ||
#Kelley RC, McDonagh B, Ferreira LF, (2018) "Advanced aging causes diaphragm functional abnormalities, global proteome remodeling, and loss of mitochondrial cysteine redox flexibility in mice." <i>Exp Gerontol</i> <b>103</b>:69–79; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29289553 29289553]; doi: [https://dx.doi.org/10.1016/j.exger.2017.12.017 10.1016/j.exger.2017.12.017]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29289553 24]. | #Kelley RC, McDonagh B, Ferreira LF, (2018) "Advanced aging causes diaphragm functional abnormalities, global proteome remodeling, and loss of mitochondrial cysteine redox flexibility in mice." <i>Exp Gerontol</i> <b>103</b>:69–79; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29289553 29289553]; doi: [https://dx.doi.org/10.1016/j.exger.2017.12.017 10.1016/j.exger.2017.12.017]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29289553 24]. | ||
+ | #Behr M, Sergeant K, Leclercq CC, Planchon S, Guignard C, Lenouvel A, Renaut J, Hausman JF, Lutts S, Guerriero G, (2018) "Insights into the molecular regulation of monolignol-derived product biosynthesis in the growing hemp hypocotyl." <i>BMC Plant Biol</i> <b>18</b>(1):1; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29291729 29291729]; doi: [https://dx.doi.org/10.1186/s12870-017-1213-1 10.1186/s12870-017-1213-1]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29291729 20]. | ||
#Ritz D, Sani E, Debiec H, Ronco P, Neri D, Fugmann T, (2018) "Membranal and blood-soluble HLA class II peptidome analyses using data-dependent and independent acquisition." <i>Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29314611 29314611]; doi: [https://dx.doi.org/10.1002/pmic.201700246 10.1002/pmic.201700246]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29314611 27]. | #Ritz D, Sani E, Debiec H, Ronco P, Neri D, Fugmann T, (2018) "Membranal and blood-soluble HLA class II peptidome analyses using data-dependent and independent acquisition." <i>Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29314611 29314611]; doi: [https://dx.doi.org/10.1002/pmic.201700246 10.1002/pmic.201700246]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29314611 27]. | ||
#Kooijman S, Brummelman J, van Els CACM, Marino F, Heck AJR, Mommen GPM, Metz B, Kersten GFA, Pennings JLA, Meiring HD, (2018) "Novel identified aluminum hydroxide-induced pathways prove monocyte activation and pro-inflammatory preparedness." <i>J Proteomics</i> <b>175</b>:144–155; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29317357 29317357]; doi: [https://dx.doi.org/10.1016/j.jprot.2017.12.021 10.1016/j.jprot.2017.12.021]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29317357 55]. | #Kooijman S, Brummelman J, van Els CACM, Marino F, Heck AJR, Mommen GPM, Metz B, Kersten GFA, Pennings JLA, Meiring HD, (2018) "Novel identified aluminum hydroxide-induced pathways prove monocyte activation and pro-inflammatory preparedness." <i>J Proteomics</i> <b>175</b>:144–155; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29317357 29317357]; doi: [https://dx.doi.org/10.1016/j.jprot.2017.12.021 10.1016/j.jprot.2017.12.021]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29317357 55]. | ||
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#Ashley J, Cordy B, Lucia D, Fradkin LG, Budnik V, Thomson T, (2018) "Retrovirus-like Gag Protein Arc1 Binds RNA and Traffics across Synaptic Boutons." <i>Cell</i> <b>172</b>(1-2):262–274.e11; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29328915 29328915]; doi: [https://dx.doi.org/10.1016/j.cell.2017.12.022 10.1016/j.cell.2017.12.022]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29328915 6]. | #Ashley J, Cordy B, Lucia D, Fradkin LG, Budnik V, Thomson T, (2018) "Retrovirus-like Gag Protein Arc1 Binds RNA and Traffics across Synaptic Boutons." <i>Cell</i> <b>172</b>(1-2):262–274.e11; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29328915 29328915]; doi: [https://dx.doi.org/10.1016/j.cell.2017.12.022 10.1016/j.cell.2017.12.022]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29328915 6]. | ||
#Khan SY, Ali M, Kabir F, Renuse S, Na CH, Talbot CC Jr, Hackett SF, Riazuddin SA, (2018) "Proteome Profiling of Developing Murine Lens Through Mass Spectrometry." <i>Invest Ophthalmol Vis Sci</i> <b>59</b>(1):100–107; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29332127 29332127]; doi: [https://dx.doi.org/10.1167/iovs.17-21601 10.1167/iovs.17-21601]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29332127 3]. | #Khan SY, Ali M, Kabir F, Renuse S, Na CH, Talbot CC Jr, Hackett SF, Riazuddin SA, (2018) "Proteome Profiling of Developing Murine Lens Through Mass Spectrometry." <i>Invest Ophthalmol Vis Sci</i> <b>59</b>(1):100–107; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29332127 29332127]; doi: [https://dx.doi.org/10.1167/iovs.17-21601 10.1167/iovs.17-21601]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29332127 3]. | ||
+ | #Meng H, Fitzgerald MC, (2018) "Proteome-Wide Characterization of Phosphorylation-Induced Conformational Changes in Breast Cancer." <i>J Proteome Res</i> <b>17</b>(3):1129–1137; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29332387 29332387]; doi: [https://dx.doi.org/10.1021/acs.jproteome.7b00795 10.1021/acs.jproteome.7b00795]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29332387 36]. | ||
#Kim DK, Park J, Han D, Yang J, Kim A, Woo J, Kim Y, Mook-Jung I, (2018) "Molecular and functional signatures in a novel Alzheimer's disease mouse model assessed by quantitative proteomics." <i>Mol Neurodegener</i> <b>13</b>(1):2; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29338754 29338754]; doi: [https://dx.doi.org/10.1186/s13024-017-0234-4 10.1186/s13024-017-0234-4]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29338754 8]. | #Kim DK, Park J, Han D, Yang J, Kim A, Woo J, Kim Y, Mook-Jung I, (2018) "Molecular and functional signatures in a novel Alzheimer's disease mouse model assessed by quantitative proteomics." <i>Mol Neurodegener</i> <b>13</b>(1):2; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29338754 29338754]; doi: [https://dx.doi.org/10.1186/s13024-017-0234-4 10.1186/s13024-017-0234-4]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29338754 8]. | ||
#Sousa DZ, Visser M, van Gelder AH, Boeren S, Pieterse MM, Pinkse MWH, Verhaert PDEM, Vogt C, Franke S, Kümmel S, Stams AJM, (2018) "The deep-subsurface sulfate reducer Desulfotomaculum kuznetsovii employs two methanol-degrading pathways." <i>Nat Commun</i> <b>9</b>(1):239; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29339722 29339722]; doi: [https://dx.doi.org/10.1038/s41467-017-02518-9 10.1038/s41467-017-02518-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29339722 84]. | #Sousa DZ, Visser M, van Gelder AH, Boeren S, Pieterse MM, Pinkse MWH, Verhaert PDEM, Vogt C, Franke S, Kümmel S, Stams AJM, (2018) "The deep-subsurface sulfate reducer Desulfotomaculum kuznetsovii employs two methanol-degrading pathways." <i>Nat Commun</i> <b>9</b>(1):239; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29339722 29339722]; doi: [https://dx.doi.org/10.1038/s41467-017-02518-9 10.1038/s41467-017-02518-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29339722 84]. | ||
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#Drabikowski K, Ferralli J, Kistowski M, Oledzki J, Dadlez M, Chiquet-Ehrismann R, (2018) "Comprehensive list of SUMO targets in Caenorhabditis elegans and its implication for evolutionary conservation of SUMO signaling." <i>Sci Rep</i> <b>8</b>(1):1139; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29348603 29348603]; doi: [https://dx.doi.org/10.1038/s41598-018-19424-9 10.1038/s41598-018-19424-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29348603 37]. | #Drabikowski K, Ferralli J, Kistowski M, Oledzki J, Dadlez M, Chiquet-Ehrismann R, (2018) "Comprehensive list of SUMO targets in Caenorhabditis elegans and its implication for evolutionary conservation of SUMO signaling." <i>Sci Rep</i> <b>8</b>(1):1139; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29348603 29348603]; doi: [https://dx.doi.org/10.1038/s41598-018-19424-9 10.1038/s41598-018-19424-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29348603 37]. | ||
#Gao Y, Ge W, (2018) "The histone methyltransferase DOT1L inhibits osteoclastogenesis and protects against osteoporosis." <i>Cell Death Dis</i> <b>9</b>(2):33; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29348610 29348610]; doi: [https://dx.doi.org/10.1038/s41419-017-0040-5 10.1038/s41419-017-0040-5]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29348610 2]. | #Gao Y, Ge W, (2018) "The histone methyltransferase DOT1L inhibits osteoclastogenesis and protects against osteoporosis." <i>Cell Death Dis</i> <b>9</b>(2):33; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29348610 29348610]; doi: [https://dx.doi.org/10.1038/s41419-017-0040-5 10.1038/s41419-017-0040-5]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29348610 2]. | ||
+ | #Phuyal S, Kasem M, Knittelfelder O, Sharma A, Fonseca DM, Vebraite V, Shaposhnikov S, Slupphaug G, Skaug V, Zienolddiny S, (2018) "Characterization of the proteome and lipidome profiles of human lung cells after low dose and chronic exposure to multiwalled carbon nanotubes." <i>Nanotoxicology</i> <b>12</b>(2):138–152; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29350075 29350075]; doi: [https://dx.doi.org/10.1080/17435390.2018.1425500 10.1080/17435390.2018.1425500]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29350075 24]. | ||
#Mustafa DAM, Pedrosa RMSM, Smid M, van der Weiden M, de Weerd V, Nigg AL, Berrevoets C, Zeneyedpour L, Priego N, Valiente M, Luider TM, Debets R, Martens JWM, Foekens JA, Sieuwerts AM, Kros JM, (2018) "T lymphocytes facilitate brain metastasis of breast cancer by inducing Guanylate-Binding Protein 1 expression." <i>Acta Neuropathol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29350274 29350274]; doi: [https://dx.doi.org/10.1007/s00401-018-1806-2 10.1007/s00401-018-1806-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29350274 6]. | #Mustafa DAM, Pedrosa RMSM, Smid M, van der Weiden M, de Weerd V, Nigg AL, Berrevoets C, Zeneyedpour L, Priego N, Valiente M, Luider TM, Debets R, Martens JWM, Foekens JA, Sieuwerts AM, Kros JM, (2018) "T lymphocytes facilitate brain metastasis of breast cancer by inducing Guanylate-Binding Protein 1 expression." <i>Acta Neuropathol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29350274 29350274]; doi: [https://dx.doi.org/10.1007/s00401-018-1806-2 10.1007/s00401-018-1806-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29350274 6]. | ||
#Schönke M, Björnholm M, Chibalin AV, Zierath JR, Deshmukh AS, (2018) "Proteomics Analysis of Skeletal Muscle from Leptin-Deficient Ob/Ob Mice Reveals Adaptive Remodeling of Metabolic Characteristics and Fiber Type Composition." <i>Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29350465 29350465]; doi: [https://dx.doi.org/10.1002/pmic.201700375 10.1002/pmic.201700375]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29350465 22]. | #Schönke M, Björnholm M, Chibalin AV, Zierath JR, Deshmukh AS, (2018) "Proteomics Analysis of Skeletal Muscle from Leptin-Deficient Ob/Ob Mice Reveals Adaptive Remodeling of Metabolic Characteristics and Fiber Type Composition." <i>Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29350465 29350465]; doi: [https://dx.doi.org/10.1002/pmic.201700375 10.1002/pmic.201700375]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29350465 22]. | ||
#Ongay S, Langelaar-Makkinje M, Stoop MP, Liu N, Overkleeft H, Luider TM, Groothuis GMM, Bischoff R, (2018) "Cleavable crosslinkers as tissue fixation reagents for proteomic analysis." <i>Chembiochem</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29356267 29356267]; doi: [https://dx.doi.org/10.1002/cbic.201700625 10.1002/cbic.201700625]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29356267 15]. | #Ongay S, Langelaar-Makkinje M, Stoop MP, Liu N, Overkleeft H, Luider TM, Groothuis GMM, Bischoff R, (2018) "Cleavable crosslinkers as tissue fixation reagents for proteomic analysis." <i>Chembiochem</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29356267 29356267]; doi: [https://dx.doi.org/10.1002/cbic.201700625 10.1002/cbic.201700625]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29356267 15]. | ||
#Topf U, Suppanz I, Samluk L, Wrobel L, Böser A, Sakowska P, Knapp B, Pietrzyk MK, Chacinska A, Warscheid B, (2018) "Quantitative proteomics identifies redox switches for global translation modulation by mitochondrially produced reactive oxygen species." <i>Nat Commun</i> <b>9</b>(1):324; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29358734 29358734]; doi: [https://dx.doi.org/10.1038/s41467-017-02694-8 10.1038/s41467-017-02694-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29358734 96]. | #Topf U, Suppanz I, Samluk L, Wrobel L, Böser A, Sakowska P, Knapp B, Pietrzyk MK, Chacinska A, Warscheid B, (2018) "Quantitative proteomics identifies redox switches for global translation modulation by mitochondrially produced reactive oxygen species." <i>Nat Commun</i> <b>9</b>(1):324; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29358734 29358734]; doi: [https://dx.doi.org/10.1038/s41467-017-02694-8 10.1038/s41467-017-02694-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29358734 96]. | ||
+ | #Kelly AC, Camacho LE, Pendarvis K, Davenport HM, Steffens NR, Smith KE, Weber CS, Lynch RM, Papas KK, Limesand SW, (2018) "Adrenergic receptor stimulation suppresses oxidative metabolism in isolated rat islets and Min6 cells." <i>Mol Cell Endocrinol</i> <b>473</b>:136–145; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29360563 29360563]; doi: [https://dx.doi.org/10.1016/j.mce.2018.01.012 10.1016/j.mce.2018.01.012]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29360563 9]. | ||
#Walheim E, Wiśniewski JR, Jastroch M, (2018) "Respiromics - An integrative analysis linking mitochondrial bioenergetics to molecular signatures." <i>Mol Metab</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29361498 29361498]; doi: [https://dx.doi.org/10.1016/j.molmet.2018.01.002 10.1016/j.molmet.2018.01.002]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29361498 32]. | #Walheim E, Wiśniewski JR, Jastroch M, (2018) "Respiromics - An integrative analysis linking mitochondrial bioenergetics to molecular signatures." <i>Mol Metab</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29361498 29361498]; doi: [https://dx.doi.org/10.1016/j.molmet.2018.01.002 10.1016/j.molmet.2018.01.002]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29361498 32]. | ||
#Kosicek M, Gudelj I, Horvatic A, Jovic T, Vuckovic F, Lauc G, Hecimovic S, (2018) "N-glycome of the Lysosomal Glycocalyx is Altered in Niemann-Pick Type C Disease (NPC) Model Cells." <i>Mol Cell Proteomics</i> <b>17</b>(4):631–642; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29367433 29367433]; doi: [https://dx.doi.org/10.1074/mcp.RA117.000129 10.1074/mcp.RA117.000129]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29367433 6]. | #Kosicek M, Gudelj I, Horvatic A, Jovic T, Vuckovic F, Lauc G, Hecimovic S, (2018) "N-glycome of the Lysosomal Glycocalyx is Altered in Niemann-Pick Type C Disease (NPC) Model Cells." <i>Mol Cell Proteomics</i> <b>17</b>(4):631–642; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29367433 29367433]; doi: [https://dx.doi.org/10.1074/mcp.RA117.000129 10.1074/mcp.RA117.000129]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29367433 6]. | ||
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#Karayel Ö, Şanal E, Giese SH, Üretmen Kagıalı ZC, Polat AN, Hu CK, Renard BY, Tuncbag N, Özlü N, (2018) "Comparative phosphoproteomic analysis reveals signaling networks regulating monopolar and bipolar cytokinesis." <i>Sci Rep</i> <b>8</b>(1):2269; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29396449 29396449]; doi: [https://dx.doi.org/10.1038/s41598-018-20231-5 10.1038/s41598-018-20231-5]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29396449 16]. | #Karayel Ö, Şanal E, Giese SH, Üretmen Kagıalı ZC, Polat AN, Hu CK, Renard BY, Tuncbag N, Özlü N, (2018) "Comparative phosphoproteomic analysis reveals signaling networks regulating monopolar and bipolar cytokinesis." <i>Sci Rep</i> <b>8</b>(1):2269; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29396449 29396449]; doi: [https://dx.doi.org/10.1038/s41598-018-20231-5 10.1038/s41598-018-20231-5]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29396449 16]. | ||
#Ikoma M, Gantt S, Casper C, Ogata Y, Zhang Q, Basom R, Dyen MR, Rose TM, Barcy S, (2018) "KSHV oral shedding and plasma viremia result in significant changes in the extracellular tumorigenic miRNA expression profile in individuals infected with the malaria parasite." <i>PLoS One</i> <b>13</b>(2):e0192659; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29425228 29425228]; doi: [https://dx.doi.org/10.1371/journal.pone.0192659 10.1371/journal.pone.0192659]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29425228 3]. | #Ikoma M, Gantt S, Casper C, Ogata Y, Zhang Q, Basom R, Dyen MR, Rose TM, Barcy S, (2018) "KSHV oral shedding and plasma viremia result in significant changes in the extracellular tumorigenic miRNA expression profile in individuals infected with the malaria parasite." <i>PLoS One</i> <b>13</b>(2):e0192659; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29425228 29425228]; doi: [https://dx.doi.org/10.1371/journal.pone.0192659 10.1371/journal.pone.0192659]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29425228 3]. | ||
+ | #Vornhagen J, Quach P, Santana-Ufret V, Alishetti V, Brokaw A, Armistead B, Qing Tang H, MacDonald JW, Bammler TK, Adams Waldorf KM, Uldbjerg N, Rajagopal L, (2018) "Human Cervical Mucus Plugs Exhibit Insufficiencies in Antimicrobial Activity Towards Group B Streptococcus." <i>J Infect Dis</i> <b>217</b>(10):1626–1636; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29425317 29425317]; doi: [https://dx.doi.org/10.1093/infdis/jiy076 10.1093/infdis/jiy076]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29425317 1]. | ||
#Sandow JJ, Rainczuk A, Infusini G, Makanji M, Bilandzic M, Wilson AL, Fairweather N, Stanton PG, Garama D, Gough D, Jobling TW, Webb AI, Stephens AN, (2018) "Discovery and Validation of Novel Protein Biomarkers in Ovarian Cancer Patient Urine." <i>Proteomics Clin Appl</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29426060 29426060]; doi: [https://dx.doi.org/10.1002/prca.201700135 10.1002/prca.201700135]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29426060 10]. | #Sandow JJ, Rainczuk A, Infusini G, Makanji M, Bilandzic M, Wilson AL, Fairweather N, Stanton PG, Garama D, Gough D, Jobling TW, Webb AI, Stephens AN, (2018) "Discovery and Validation of Novel Protein Biomarkers in Ovarian Cancer Patient Urine." <i>Proteomics Clin Appl</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29426060 29426060]; doi: [https://dx.doi.org/10.1002/prca.201700135 10.1002/prca.201700135]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29426060 10]. | ||
#De Muyt A, Pyatnitskaya A, Andréani J, Ranjha L, Ramus C, Laureau R, Fernandez-Vega A, Holoch D, Girard E, Govin J, Margueron R, Couté Y, Cejka P, Guérois R, Borde V, (2018) "A meiotic XPF-ERCC1-like complex recognizes joint molecule recombination intermediates to promote crossover formation." <i>Genes Dev</i> <b>32</b>(3-4):283–296; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29440262 29440262]; doi: [https://dx.doi.org/10.1101/gad.308510.117 10.1101/gad.308510.117]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29440262 19]. | #De Muyt A, Pyatnitskaya A, Andréani J, Ranjha L, Ramus C, Laureau R, Fernandez-Vega A, Holoch D, Girard E, Govin J, Margueron R, Couté Y, Cejka P, Guérois R, Borde V, (2018) "A meiotic XPF-ERCC1-like complex recognizes joint molecule recombination intermediates to promote crossover formation." <i>Genes Dev</i> <b>32</b>(3-4):283–296; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29440262 29440262]; doi: [https://dx.doi.org/10.1101/gad.308510.117 10.1101/gad.308510.117]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29440262 19]. | ||
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#Carette X, Platig J, Young DC, Helmel M, Young AT, Wang Z, Potluri LP, Moody CS, Zeng J, Prisic S, Paulson JN, Muntel J, Madduri AVR, Velarde J, Mayfield JA, Locher C, Wang T, Quackenbush J, Rhee KY, Moody DB, Steen H, Husson RN, (2018) "Multisystem Analysis of <i>Mycobacterium tuberculosis</i> Reveals Kinase-Dependent Remodeling of the Pathogen-Environment Interface." <i>MBio</i> <b>9</b>(2):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29511081 29511081]; doi: [https://dx.doi.org/10.1128/mBio.02333-17 10.1128/mBio.02333-17]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29511081 48]. | #Carette X, Platig J, Young DC, Helmel M, Young AT, Wang Z, Potluri LP, Moody CS, Zeng J, Prisic S, Paulson JN, Muntel J, Madduri AVR, Velarde J, Mayfield JA, Locher C, Wang T, Quackenbush J, Rhee KY, Moody DB, Steen H, Husson RN, (2018) "Multisystem Analysis of <i>Mycobacterium tuberculosis</i> Reveals Kinase-Dependent Remodeling of the Pathogen-Environment Interface." <i>MBio</i> <b>9</b>(2):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29511081 29511081]; doi: [https://dx.doi.org/10.1128/mBio.02333-17 10.1128/mBio.02333-17]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29511081 48]. | ||
#Iradi MCG, Triplett JC, Thomas JD, Davila R, Crown AM, Brown H, Lewis J, Swanson MS, Xu G, Rodriguez-Lebron E, Borchelt DR, (2018) "Characterization of gene regulation and protein interaction networks for Matrin 3 encoding mutations linked to amyotrophic lateral sclerosis and myopathy." <i>Sci Rep</i> <b>8</b>(1):4049; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29511296 29511296]; doi: [https://dx.doi.org/10.1038/s41598-018-21371-4 10.1038/s41598-018-21371-4]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29511296 23]. | #Iradi MCG, Triplett JC, Thomas JD, Davila R, Crown AM, Brown H, Lewis J, Swanson MS, Xu G, Rodriguez-Lebron E, Borchelt DR, (2018) "Characterization of gene regulation and protein interaction networks for Matrin 3 encoding mutations linked to amyotrophic lateral sclerosis and myopathy." <i>Sci Rep</i> <b>8</b>(1):4049; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29511296 29511296]; doi: [https://dx.doi.org/10.1038/s41598-018-21371-4 10.1038/s41598-018-21371-4]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29511296 23]. | ||
+ | #Evans PR, Gerber KJ, Dammer EB, Duong DM, Goswami D, Lustberg DJ, Zou J, Yang JJ, Dudek SM, Griffin PR, Seyfried NT, Hepler JR, (2018) "Interactome Analysis Reveals Regulator of G Protein Signaling 14 (RGS14) is a Novel Calcium/Calmodulin (Ca<sup>2+</sup>/CaM) and CaM Kinase II (CaMKII) Binding Partner." <i>J Proteome Res</i> <b>17</b>(4):1700–1711; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29518331 29518331]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00027 10.1021/acs.jproteome.8b00027]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29518331 6]. | ||
#Ge S, Xia X, Ding C, Zhen B, Zhou Q, Feng J, Yuan J, Chen R, Li Y, Ge Z, Ji J, Zhang L, Wang J, Li Z, Lai Y, Hu Y, Li Y, Li Y, Gao J, Chen L, Xu J, Zhang C, Jung SY, Choi JM, Jain A, Liu M, Song L, Liu W, Guo G, Gong T, Huang Y, Qiu Y, Huang W, Shi T, Zhu W, Wang Y, He F, Shen L, Qin J, (2018) "A proteomic landscape of diffuse-type gastric cancer." <i>Nat Commun</i> <b>9</b>(1):1012; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29520031 29520031]; doi: [https://dx.doi.org/10.1038/s41467-018-03121-2 10.1038/s41467-018-03121-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29520031 164]. | #Ge S, Xia X, Ding C, Zhen B, Zhou Q, Feng J, Yuan J, Chen R, Li Y, Ge Z, Ji J, Zhang L, Wang J, Li Z, Lai Y, Hu Y, Li Y, Li Y, Gao J, Chen L, Xu J, Zhang C, Jung SY, Choi JM, Jain A, Liu M, Song L, Liu W, Guo G, Gong T, Huang Y, Qiu Y, Huang W, Shi T, Zhu W, Wang Y, He F, Shen L, Qin J, (2018) "A proteomic landscape of diffuse-type gastric cancer." <i>Nat Commun</i> <b>9</b>(1):1012; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29520031 29520031]; doi: [https://dx.doi.org/10.1038/s41467-018-03121-2 10.1038/s41467-018-03121-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29520031 164]. | ||
#Ojalill M, Rappu P, Siljamäki E, Taimen P, Boström P, Heino J, (2018) "The composition of prostate core matrisome in vivo and in vitro unveiled by mass spectrometric analysis." <i>Prostate</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29520855 29520855]; doi: [https://dx.doi.org/10.1002/pros.23503 10.1002/pros.23503]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29520855 62]. | #Ojalill M, Rappu P, Siljamäki E, Taimen P, Boström P, Heino J, (2018) "The composition of prostate core matrisome in vivo and in vitro unveiled by mass spectrometric analysis." <i>Prostate</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29520855 29520855]; doi: [https://dx.doi.org/10.1002/pros.23503 10.1002/pros.23503]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29520855 62]. | ||
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#Costanza B, Turtoi A, Bellahcène A, Hirano T, Peulen O, Blomme A, Hennequière V, Mutijima E, Boniver J, Meuwis MA, Josse C, Koopmansch B, Segers K, Yokobori T, Fahmy K, Thiry M, Coimbra C, Garbacki N, Colige A, Baiwir D, Bours V, Louis E, Detry O, Delvenne P, Nishiyama M, Castronovo V, (2018) "Innovative methodology for the identification of soluble biomarkers in fresh tissues." <i>Oncotarget</i> <b>9</b>(12):10665–10680; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29535834 29535834]; doi: [https://dx.doi.org/10.18632/oncotarget.24366 10.18632/oncotarget.24366]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29535834 15]. | #Costanza B, Turtoi A, Bellahcène A, Hirano T, Peulen O, Blomme A, Hennequière V, Mutijima E, Boniver J, Meuwis MA, Josse C, Koopmansch B, Segers K, Yokobori T, Fahmy K, Thiry M, Coimbra C, Garbacki N, Colige A, Baiwir D, Bours V, Louis E, Detry O, Delvenne P, Nishiyama M, Castronovo V, (2018) "Innovative methodology for the identification of soluble biomarkers in fresh tissues." <i>Oncotarget</i> <b>9</b>(12):10665–10680; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29535834 29535834]; doi: [https://dx.doi.org/10.18632/oncotarget.24366 10.18632/oncotarget.24366]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29535834 15]. | ||
#Zila N, Bileck A, Muqaku B, Janker L, Eichhoff OM, Cheng PF, Dummer R, Levesque MP, Gerner C, Paulitschke V, (2018) "Proteomics-based insights into mitogen-activated protein kinase inhibitor resistance of cerebral melanoma metastases." <i>Clin Proteomics</i> <b>15</b>:13; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29541007 29541007]; doi: [https://dx.doi.org/10.1186/s12014-018-9189-x 10.1186/s12014-018-9189-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29541007 36]. | #Zila N, Bileck A, Muqaku B, Janker L, Eichhoff OM, Cheng PF, Dummer R, Levesque MP, Gerner C, Paulitschke V, (2018) "Proteomics-based insights into mitogen-activated protein kinase inhibitor resistance of cerebral melanoma metastases." <i>Clin Proteomics</i> <b>15</b>:13; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29541007 29541007]; doi: [https://dx.doi.org/10.1186/s12014-018-9189-x 10.1186/s12014-018-9189-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29541007 36]. | ||
+ | #Huang X, Zhu H, Gao Z, Li J, Zhuang J, Dong Y, Shen B, Li M, Zhou H, Guo H, Huang R, Yan J, (2018) "Wnt7a activates canonical Wnt signaling, promotes bladder cancer cell invasion, and is suppressed by miR-370-3p." <i>J Biol Chem</i> <b>293</b>(18):6693–6706; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29549123 29549123]; doi: [https://dx.doi.org/10.1074/jbc.RA118.001689 10.1074/jbc.RA118.001689]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29549123 1]. | ||
#Savitski MM, Zinn N, Faelth-Savitski M, Poeckel D, Gade S, Becher I, Muelbaier M, Wagner AJ, Strohmer K, Werner T, Melchert S, Petretich M, Rutkowska A, Vappiani J, Franken H, Steidel M, Sweetman GM, Gilan O, Lam EYN, Dawson MA, Prinjha RK, Grandi P, Bergamini G, Bantscheff M, (2018) "Multiplexed Proteome Dynamics Profiling Reveals Mechanisms Controlling Protein Homeostasis." <i>Cell</i> <b>173</b>(1):260–274.e25; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29551266 29551266]; doi: [https://dx.doi.org/10.1016/j.cell.2018.02.030 10.1016/j.cell.2018.02.030]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29551266 5]. | #Savitski MM, Zinn N, Faelth-Savitski M, Poeckel D, Gade S, Becher I, Muelbaier M, Wagner AJ, Strohmer K, Werner T, Melchert S, Petretich M, Rutkowska A, Vappiani J, Franken H, Steidel M, Sweetman GM, Gilan O, Lam EYN, Dawson MA, Prinjha RK, Grandi P, Bergamini G, Bantscheff M, (2018) "Multiplexed Proteome Dynamics Profiling Reveals Mechanisms Controlling Protein Homeostasis." <i>Cell</i> <b>173</b>(1):260–274.e25; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29551266 29551266]; doi: [https://dx.doi.org/10.1016/j.cell.2018.02.030 10.1016/j.cell.2018.02.030]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29551266 5]. | ||
#Salunkhe V, De Cuyper IM, Papadopoulos P, van der Meer PF, Daal BB, Villa-Fajardo M, de Korte D, van den Berg TK, Gutiérrez L, (2018) "A comprehensive proteomics study on platelet concentrates: Platelet proteome, storage time and Mirasol pathogen reduction technology." <i>Platelets</i> <b></b>:1–12; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29553857 29553857]; doi: [https://dx.doi.org/10.1080/09537104.2018.1447658 10.1080/09537104.2018.1447658]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29553857 27]. | #Salunkhe V, De Cuyper IM, Papadopoulos P, van der Meer PF, Daal BB, Villa-Fajardo M, de Korte D, van den Berg TK, Gutiérrez L, (2018) "A comprehensive proteomics study on platelet concentrates: Platelet proteome, storage time and Mirasol pathogen reduction technology." <i>Platelets</i> <b></b>:1–12; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29553857 29553857]; doi: [https://dx.doi.org/10.1080/09537104.2018.1447658 10.1080/09537104.2018.1447658]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29553857 27]. | ||
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#Adav SS, Wei J, Terence Y, Ang BC, Yip LW, Sze SK, (2018) "Proteomic Analysis of Aqueous Humor from Primary Open Angle Glaucoma Patients on Drug Treatment Revealed Altered Complement Activation Cascade." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29901396 29901396]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00244 10.1021/acs.jproteome.8b00244]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29901396 80]. | #Adav SS, Wei J, Terence Y, Ang BC, Yip LW, Sze SK, (2018) "Proteomic Analysis of Aqueous Humor from Primary Open Angle Glaucoma Patients on Drug Treatment Revealed Altered Complement Activation Cascade." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29901396 29901396]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00244 10.1021/acs.jproteome.8b00244]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29901396 80]. | ||
#Steenbeek SC, Pham TV, de Ligt J, Zomer A, Knol JC, Piersma SR, Schelfhorst T, Huisjes R, Schiffelers RM, Cuppen E, Jimenez CR, van Rheenen J, (2018) "Cancer cells copy migratory behavior and exchange signaling networks via extracellular vesicles." <i>EMBO J</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29907695 29907695]; doi: [https://dx.doi.org/10.15252/embj.201798357 10.15252/embj.201798357]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29907695 67]. | #Steenbeek SC, Pham TV, de Ligt J, Zomer A, Knol JC, Piersma SR, Schelfhorst T, Huisjes R, Schiffelers RM, Cuppen E, Jimenez CR, van Rheenen J, (2018) "Cancer cells copy migratory behavior and exchange signaling networks via extracellular vesicles." <i>EMBO J</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29907695 29907695]; doi: [https://dx.doi.org/10.15252/embj.201798357 10.15252/embj.201798357]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29907695 67]. | ||
+ | #Selvan LDN, Danda R, Madugundu AK, Puttamallesh VN, Sathe GJ, Krishnan UM, Khetan V, Rishi P, Prasad TSK, Pandey A, Krishnakumar S, Gowda H, Elchuri SV, (2018) "Phosphoproteomics of Retinoblastoma: A Pilot Study Identifies Aberrant Kinases." <i>Molecules</i> <b>23</b>(6):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29914080 29914080]; doi: [https://dx.doi.org/10.3390/molecules23061454 10.3390/molecules23061454]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29914080 12]. | ||
#Huang H, Scheffler TL, Gerrard DE, Larsen MR, Lametsch R, (2018) "Quantitative Proteomics and Phosphoproteomics Analysis Revealed Different Regulatory Mechanisms of Halothane and Rendement Napole Genes in Porcine Muscle Metabolism." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29916714 29916714]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00294 10.1021/acs.jproteome.8b00294]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29916714 6]. | #Huang H, Scheffler TL, Gerrard DE, Larsen MR, Lametsch R, (2018) "Quantitative Proteomics and Phosphoproteomics Analysis Revealed Different Regulatory Mechanisms of Halothane and Rendement Napole Genes in Porcine Muscle Metabolism." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29916714 29916714]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00294 10.1021/acs.jproteome.8b00294]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29916714 6]. | ||
#Rapino F, Delaunay S, Rambow F, Zhou Z, Tharun L, De Tullio P, Sin O, Shostak K, Schmitz S, Piepers J, Ghesquière B, Karim L, Charloteaux B, Jamart D, Florin A, Lambert C, Rorive A, Jerusalem G, Leucci E, Dewaele M, Vooijs M, Leidel SA, Georges M, Voz M, Peers B, Büttner R, Marine JC, Chariot A, Close P, (2018) "Codon-specific translation reprogramming promotes resistance to targeted therapy." <i>Nature</i> <b>558</b>(7711):605–609; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29925953 29925953]; doi: [https://dx.doi.org/10.1038/s41586-018-0243-7 10.1038/s41586-018-0243-7]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29925953 40]. | #Rapino F, Delaunay S, Rambow F, Zhou Z, Tharun L, De Tullio P, Sin O, Shostak K, Schmitz S, Piepers J, Ghesquière B, Karim L, Charloteaux B, Jamart D, Florin A, Lambert C, Rorive A, Jerusalem G, Leucci E, Dewaele M, Vooijs M, Leidel SA, Georges M, Voz M, Peers B, Büttner R, Marine JC, Chariot A, Close P, (2018) "Codon-specific translation reprogramming promotes resistance to targeted therapy." <i>Nature</i> <b>558</b>(7711):605–609; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29925953 29925953]; doi: [https://dx.doi.org/10.1038/s41586-018-0243-7 10.1038/s41586-018-0243-7]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29925953 40]. | ||
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#Simunovic F, Winninger O, Strassburg S, Koch HG, Finkenzeller G, Stark GB, Lampert FM, (2019) "Increased differentiation and production of extracellular matrix components of primary human osteoblasts after cocultivation with endothelial cells: A quantitative proteomics approach." <i>J Cell Biochem</i> <b>120</b>(1):396–404; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30126049 30126049]; doi: [https://dx.doi.org/10.1002/jcb.27394 10.1002/jcb.27394]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30126049 20]. | #Simunovic F, Winninger O, Strassburg S, Koch HG, Finkenzeller G, Stark GB, Lampert FM, (2019) "Increased differentiation and production of extracellular matrix components of primary human osteoblasts after cocultivation with endothelial cells: A quantitative proteomics approach." <i>J Cell Biochem</i> <b>120</b>(1):396–404; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30126049 30126049]; doi: [https://dx.doi.org/10.1002/jcb.27394 10.1002/jcb.27394]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30126049 20]. | ||
#Shen ZQ, Shi B, Wang TR, Jiao J, Shang X, Wu QJ, Zhou YM, Cao TF, Du Q, Wang XX, Li D, (2018) "Characterization of the Sperm Proteome and Reproductive Outcomes with <i>in Vitro</i> Fertilization after a Reduction in Male Ejaculatory Abstinence Period." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30126978 30126978]; doi: [https://dx.doi.org/10.1074/mcp.RA117.000541 10.1074/mcp.RA117.000541]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30126978 18]. | #Shen ZQ, Shi B, Wang TR, Jiao J, Shang X, Wu QJ, Zhou YM, Cao TF, Du Q, Wang XX, Li D, (2018) "Characterization of the Sperm Proteome and Reproductive Outcomes with <i>in Vitro</i> Fertilization after a Reduction in Male Ejaculatory Abstinence Period." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30126978 30126978]; doi: [https://dx.doi.org/10.1074/mcp.RA117.000541 10.1074/mcp.RA117.000541]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30126978 18]. | ||
+ | #Locatelli G, Theodorou D, Kendirli A, Jordão MJC, Staszewski O, Phulphagar K, Cantuti-Castelvetri L, Dagkalis A, Bessis A, Simons M, Meissner F, Prinz M, Kerschensteiner M, (2018) "Mononuclear phagocytes locally specify and adapt their phenotype in a multiple sclerosis model." <i>Nat Neurosci</i> <b>21</b>(9):1196–1208; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30127427 30127427]; doi: [https://dx.doi.org/10.1038/s41593-018-0212-3 10.1038/s41593-018-0212-3]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30127427 78]. | ||
#DeLeon-Pennell KY, Mouton AJ, Ero OK, Ma Y, Padmanabhan Iyer R, Flynn ER, Espinoza I, Musani SK, Vasan RS, Hall ME, Fox ER, Lindsey ML, (2018) "LXR/RXR signaling and neutrophil phenotype following myocardial infarction classify sex differences in remodeling." <i>Basic Res Cardiol</i> <b>113</b>(5):40; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30132266 30132266]; doi: [https://dx.doi.org/10.1007/s00395-018-0699-5 10.1007/s00395-018-0699-5]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30132266 120]. | #DeLeon-Pennell KY, Mouton AJ, Ero OK, Ma Y, Padmanabhan Iyer R, Flynn ER, Espinoza I, Musani SK, Vasan RS, Hall ME, Fox ER, Lindsey ML, (2018) "LXR/RXR signaling and neutrophil phenotype following myocardial infarction classify sex differences in remodeling." <i>Basic Res Cardiol</i> <b>113</b>(5):40; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30132266 30132266]; doi: [https://dx.doi.org/10.1007/s00395-018-0699-5 10.1007/s00395-018-0699-5]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30132266 120]. | ||
#Weßbecher IM, Hinrichsen I, Funke S, Oellerich T, Plotz G, Zeuzem S, Grus FH, Biondi RM, Brieger A, (2018) "DNA mismatch repair activity of MutLα is regulated by CK2-dependent phosphorylation of MLH1 (S477)." <i>Mol Carcinog</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30136313 30136313]; doi: [https://dx.doi.org/10.1002/mc.22892 10.1002/mc.22892]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30136313 2]. | #Weßbecher IM, Hinrichsen I, Funke S, Oellerich T, Plotz G, Zeuzem S, Grus FH, Biondi RM, Brieger A, (2018) "DNA mismatch repair activity of MutLα is regulated by CK2-dependent phosphorylation of MLH1 (S477)." <i>Mol Carcinog</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30136313 30136313]; doi: [https://dx.doi.org/10.1002/mc.22892 10.1002/mc.22892]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30136313 2]. | ||
+ | #Bruning U, Morales-Rodriguez F, Kalucka J, Goveia J, Taverna F, Queiroz KCS, Dubois C, Cantelmo AR, Chen R, Loroch S, Timmerman E, Caixeta V, Bloch K, Conradi LC, Treps L, Staes A, Gevaert K, Tee A, Dewerchin M, Semenkovich CF, Impens F, Schilling B, Verdin E, Swinnen JV, Meier JL, Kulkarni RA, Sickmann A, Ghesquière B, Schoonjans L, Li X, Mazzone M, Carmeliet P, (2018) "Impairment of Angiogenesis by Fatty Acid Synthase Inhibition Involves mTOR Malonylation." <i>Cell Metab</i> <b>28</b>(6):866–880.e15; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30146486 30146486]; doi: [https://dx.doi.org/10.1016/j.cmet.2018.07.019 10.1016/j.cmet.2018.07.019]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30146486 2]. | ||
#Varland S, Aksnes H, Kryuchkov F, Impens F, Van Haver D, Jonckheere V, Ziegler M, Gevaert K, Van Damme P, Arnesen T, (2018) "N-terminal acetylation levels are maintained during acetyl-CoA deficiency in Saccharomyces cerevisiae." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30150368 30150368]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000982 10.1074/mcp.RA118.000982]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30150368 17]. | #Varland S, Aksnes H, Kryuchkov F, Impens F, Van Haver D, Jonckheere V, Ziegler M, Gevaert K, Van Damme P, Arnesen T, (2018) "N-terminal acetylation levels are maintained during acetyl-CoA deficiency in Saccharomyces cerevisiae." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30150368 30150368]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000982 10.1074/mcp.RA118.000982]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30150368 17]. | ||
#Béguin EP, van den Eshof BL, Hoogendijk AJ, Nota B, Mertens K, Meijer AB, van den Biggelaar M, (2018) "Integrated proteomic analysis of tumor necrosis factor α and interleukin 1β-induced endothelial inflammation." <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30153514 30153514]; doi: [https://dx.doi.org/10.1016/j.jprot.2018.08.011 10.1016/j.jprot.2018.08.011]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30153514 51]. | #Béguin EP, van den Eshof BL, Hoogendijk AJ, Nota B, Mertens K, Meijer AB, van den Biggelaar M, (2018) "Integrated proteomic analysis of tumor necrosis factor α and interleukin 1β-induced endothelial inflammation." <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30153514 30153514]; doi: [https://dx.doi.org/10.1016/j.jprot.2018.08.011 10.1016/j.jprot.2018.08.011]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30153514 51]. | ||
+ | #Yanovich G, Agmon H, Harel M, Sonnenblick A, Peretz T, Geiger T, (2018) "Clinical Proteomics of Breast Cancer Reveals a Novel Layer of Breast Cancer Classification." <i>Cancer Res</i> <b>78</b>(20):6001–6010; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30154156 30154156]; doi: [https://dx.doi.org/10.1158/0008-5472.CAN-18-1079 10.1158/0008-5472.CAN-18-1079]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30154156 30]. | ||
#Ten-Doménech I, Simó-Alfonso EF, Herrero-Martínez JM, (2018) "Improving Fractionation of Human Milk Proteins through Calcium Phosphate Coprecipitation and Their Rapid Characterization by Capillary Electrophoresis." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30156851 30156851]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00526 10.1021/acs.jproteome.8b00526]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30156851 26]. | #Ten-Doménech I, Simó-Alfonso EF, Herrero-Martínez JM, (2018) "Improving Fractionation of Human Milk Proteins through Calcium Phosphate Coprecipitation and Their Rapid Characterization by Capillary Electrophoresis." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30156851 30156851]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00526 10.1021/acs.jproteome.8b00526]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30156851 26]. | ||
+ | #Guneykaya D, Ivanov A, Hernandez DP, Haage V, Wojtas B, Meyer N, Maricos M, Jordan P, Buonfiglioli A, Gielniewski B, Ochocka N, Cömert C, Friedrich C, Artiles LS, Kaminska B, Mertins P, Beule D, Kettenmann H, Wolf SA, (2018) "Transcriptional and Translational Differences of Microglia from Male and Female Brains." <i>Cell Rep</i> <b>24</b>(10):2773–2783.e6; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30184509 30184509]; doi: [https://dx.doi.org/10.1016/j.celrep.2018.08.001 10.1016/j.celrep.2018.08.001]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30184509 8]. | ||
#Carnielli CM, Macedo CCS, De Rossi T, Granato DC, Rivera C, Domingues RR, Pauletti BA, Yokoo S, Heberle H, Busso-Lopes AF, Cervigne NK, Sawazaki-Calone I, Meirelles GV, Marchi FA, Telles GP, Minghim R, Ribeiro ACP, Brandão TB, de Castro G Jr, González-Arriagada WA, Gomes A, Penteado F, Santos-Silva AR, Lopes MA, Rodrigues PC, Sundquist E, Salo T, da Silva SD, Alaoui-Jamali MA, Graner E, Fox JW, Coletta RD, Paes Leme AF, (2018) "Combining discovery and targeted proteomics reveals a prognostic signature in oral cancer." <i>Nat Commun</i> <b>9</b>(1):3598; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30185791 30185791]; doi: [https://dx.doi.org/10.1038/s41467-018-05696-2 10.1038/s41467-018-05696-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30185791 122]. | #Carnielli CM, Macedo CCS, De Rossi T, Granato DC, Rivera C, Domingues RR, Pauletti BA, Yokoo S, Heberle H, Busso-Lopes AF, Cervigne NK, Sawazaki-Calone I, Meirelles GV, Marchi FA, Telles GP, Minghim R, Ribeiro ACP, Brandão TB, de Castro G Jr, González-Arriagada WA, Gomes A, Penteado F, Santos-Silva AR, Lopes MA, Rodrigues PC, Sundquist E, Salo T, da Silva SD, Alaoui-Jamali MA, Graner E, Fox JW, Coletta RD, Paes Leme AF, (2018) "Combining discovery and targeted proteomics reveals a prognostic signature in oral cancer." <i>Nat Commun</i> <b>9</b>(1):3598; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30185791 30185791]; doi: [https://dx.doi.org/10.1038/s41467-018-05696-2 10.1038/s41467-018-05696-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30185791 122]. | ||
+ | #Abreha MH, Dammer EB, Ping L, Zhang T, Duong DM, Gearing M, Lah JJ, Levey AI, Seyfried NT, (2018) "Quantitative Analysis of the Brain Ubiquitylome in Alzheimer's Disease." <i>Proteomics</i> <b>18</b>(20):e1800108; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30230243 30230243]; doi: [https://dx.doi.org/10.1002/pmic.201800108 10.1002/pmic.201800108]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30230243 29]. | ||
#Finamore F, Reny JL, Malacarne S, Fontana P, Sanchez JC, (2018) "A high glucose level is associated with decreased aspirin-mediated acetylation of platelet cyclooxygenase (COX)-1 at serine 529: A pilot study." <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30240925 30240925]; doi: [https://dx.doi.org/10.1016/j.jprot.2018.09.007 10.1016/j.jprot.2018.09.007]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30240925 18]. | #Finamore F, Reny JL, Malacarne S, Fontana P, Sanchez JC, (2018) "A high glucose level is associated with decreased aspirin-mediated acetylation of platelet cyclooxygenase (COX)-1 at serine 529: A pilot study." <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30240925 30240925]; doi: [https://dx.doi.org/10.1016/j.jprot.2018.09.007 10.1016/j.jprot.2018.09.007]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30240925 18]. | ||
+ | #Ohta S, Taniguchi T, Sato N, Hamada M, Taniguchi H, Rappsilber J, (2019) "Quantitative Proteomics of the Mitotic Chromosome Scaffold Reveals the Association of BAZ1B with Chromosomal Axes." <i>Mol Cell Proteomics</i> <b>18</b>(2):169–181; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30266865 30266865]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000923 10.1074/mcp.RA118.000923]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30266865 3]. | ||
#Sun J, Shi J, Wang Y, Chen Y, Li Y, Kong D, Chang L, Liu F, Lv Z, Zhou Y, He F, Zhang Y, Xu P, (2018) "Multiproteases Combined with High-pH Reverse-Phase Separation Strategy Verified Fourteen Missing Proteins in Human Testis Tissue." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30280576 30280576]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00397 10.1021/acs.jproteome.8b00397]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30280576 108]. | #Sun J, Shi J, Wang Y, Chen Y, Li Y, Kong D, Chang L, Liu F, Lv Z, Zhou Y, He F, Zhang Y, Xu P, (2018) "Multiproteases Combined with High-pH Reverse-Phase Separation Strategy Verified Fourteen Missing Proteins in Human Testis Tissue." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30280576 30280576]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00397 10.1021/acs.jproteome.8b00397]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30280576 108]. | ||
#Sepil I, Hopkins BR, Dean R, Thézénas ML, Charles PD, Konietzny R, Fischer R, Kessler B, Wigby S, (2018) "Quantitative proteomics identification of seminal fluid proteins in male <i>Drosophila melanogaster</i>." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30287546 30287546]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000831 10.1074/mcp.RA118.000831]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30287546 87]. | #Sepil I, Hopkins BR, Dean R, Thézénas ML, Charles PD, Konietzny R, Fischer R, Kessler B, Wigby S, (2018) "Quantitative proteomics identification of seminal fluid proteins in male <i>Drosophila melanogaster</i>." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30287546 30287546]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000831 10.1074/mcp.RA118.000831]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30287546 87]. | ||
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#Zhao Y, Wilmarth PA, Cheng C, Limi S, Fowler VM, Zheng D, David LL, Cvekl A, (2019) "Proteome-transcriptome analysis and proteome remodeling in mouse lens epithelium and fibers." <i>Exp Eye Res</i> <b>179</b>:32–46; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30359574 30359574]; doi: [https://dx.doi.org/10.1016/j.exer.2018.10.011 10.1016/j.exer.2018.10.011]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30359574 3]. | #Zhao Y, Wilmarth PA, Cheng C, Limi S, Fowler VM, Zheng D, David LL, Cvekl A, (2019) "Proteome-transcriptome analysis and proteome remodeling in mouse lens epithelium and fibers." <i>Exp Eye Res</i> <b>179</b>:32–46; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30359574 30359574]; doi: [https://dx.doi.org/10.1016/j.exer.2018.10.011 10.1016/j.exer.2018.10.011]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30359574 3]. | ||
#Magagnotti C, Zerbini G, Fermo I, Carletti RM, Bonfanti R, Vallone F, Andolfo A, (2018) "Identification of nephropathy predictors in urine from children with a recent diagnosis of type 1 diabetes." <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30366120 30366120]; doi: [https://dx.doi.org/10.1016/j.jprot.2018.10.010 10.1016/j.jprot.2018.10.010]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30366120 51]. | #Magagnotti C, Zerbini G, Fermo I, Carletti RM, Bonfanti R, Vallone F, Andolfo A, (2018) "Identification of nephropathy predictors in urine from children with a recent diagnosis of type 1 diabetes." <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30366120 30366120]; doi: [https://dx.doi.org/10.1016/j.jprot.2018.10.010 10.1016/j.jprot.2018.10.010]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30366120 51]. | ||
+ | #Del Gaudio F, Pollastro F, Mozzicafreddo M, Riccio R, Minassi A, Monti MC, (2018) "Chemoproteomic fishing identifies arzanol as a positive modulator of brain glycogen phosphorylase." <i>Chem Commun (Camb)</i> <b>54</b>(91):12863–12866; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30375590 30375590]; doi: [https://dx.doi.org/10.1039/c8cc07692h 10.1039/c8cc07692h]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30375590 82]. | ||
#Tamminen M, Betz A, Pereira AL, Thali M, Matthews B, Suter MJ, Narwani A, (2018) "Proteome evolution under non-substitutable resource limitation." <i>Nat Commun</i> <b>9</b>(1):4650; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30405128 30405128]; doi: [https://dx.doi.org/10.1038/s41467-018-07106-z 10.1038/s41467-018-07106-z]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30405128 32]. | #Tamminen M, Betz A, Pereira AL, Thali M, Matthews B, Suter MJ, Narwani A, (2018) "Proteome evolution under non-substitutable resource limitation." <i>Nat Commun</i> <b>9</b>(1):4650; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30405128 30405128]; doi: [https://dx.doi.org/10.1038/s41467-018-07106-z 10.1038/s41467-018-07106-z]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30405128 32]. | ||
#Wang L, Dong Z, Wang J, Yin Y, Liu H, Hu W, Peng Z, Liu C, Li M, Banno Y, Shimada T, Xia Q, Zhao P, (2018) "Proteomic Analysis of Larval Integument in a Dominant Obese Translucent (Obs) Silkworm Mutant." <i>J Insect Sci</i> <b>18</b>(6):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30412263 30412263]; doi: [https://dx.doi.org/10.1093/jisesa/iey098 10.1093/jisesa/iey098]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30412263 6]. | #Wang L, Dong Z, Wang J, Yin Y, Liu H, Hu W, Peng Z, Liu C, Li M, Banno Y, Shimada T, Xia Q, Zhao P, (2018) "Proteomic Analysis of Larval Integument in a Dominant Obese Translucent (Obs) Silkworm Mutant." <i>J Insect Sci</i> <b>18</b>(6):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30412263 30412263]; doi: [https://dx.doi.org/10.1093/jisesa/iey098 10.1093/jisesa/iey098]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30412263 6]. | ||
#Bonnet J, Garcia C, Leger T, Couquet MP, Vignoles P, Gedeao V, Ndung'u J, Boudot C, Bisser S, Courtioux B, (2018) "Proteome characterization in various biological fluids of Trypanosoma brucei gambiense-infected subjects." <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30414516 30414516]; doi: [https://dx.doi.org/10.1016/j.jprot.2018.11.005 10.1016/j.jprot.2018.11.005]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30414516 40]. | #Bonnet J, Garcia C, Leger T, Couquet MP, Vignoles P, Gedeao V, Ndung'u J, Boudot C, Bisser S, Courtioux B, (2018) "Proteome characterization in various biological fluids of Trypanosoma brucei gambiense-infected subjects." <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30414516 30414516]; doi: [https://dx.doi.org/10.1016/j.jprot.2018.11.005 10.1016/j.jprot.2018.11.005]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30414516 40]. | ||
#Gontan C, Mira-Bontenbal H, Magaraki A, Dupont C, Barakat TS, Rentmeester E, Demmers J, Gribnau J, (2018) "REX1 is the critical target of RNF12 in imprinted X chromosome inactivation in mice." <i>Nat Commun</i> <b>9</b>(1):4752; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30420655 30420655]; doi: [https://dx.doi.org/10.1038/s41467-018-07060-w 10.1038/s41467-018-07060-w]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30420655 120]. | #Gontan C, Mira-Bontenbal H, Magaraki A, Dupont C, Barakat TS, Rentmeester E, Demmers J, Gribnau J, (2018) "REX1 is the critical target of RNF12 in imprinted X chromosome inactivation in mice." <i>Nat Commun</i> <b>9</b>(1):4752; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30420655 30420655]; doi: [https://dx.doi.org/10.1038/s41467-018-07060-w 10.1038/s41467-018-07060-w]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30420655 120]. | ||
+ | #Gfeller D, Guillaume P, Michaux J, Pak HS, Daniel RT, Racle J, Coukos G, Bassani-Sternberg M, (2018) "The Length Distribution and Multiple Specificity of Naturally Presented HLA-I Ligands." <i>J Immunol</i> <b>201</b>(12):3705–3716; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30429286 30429286]; doi: [https://dx.doi.org/10.4049/jimmunol.1800914 10.4049/jimmunol.1800914]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30429286 11]. | ||
#Bigenzahn JW, Collu GM, Kartnig F, Pieraks M, Vladimer GI, Heinz LX, Sedlyarov V, Schischlik F, Fauster A, Rebsamen M, Parapatics K, Blomen VA, Müller AC, Winter GE, Kralovics R, Brummelkamp TR, Mlodzik M, Superti-Furga G, (2018) "LZTR1 is a regulator of RAS ubiquitination and signaling." <i>Science</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30442766 30442766]; doi: [https://dx.doi.org/10.1126/science.aap8210 10.1126/science.aap8210]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30442766 20]. | #Bigenzahn JW, Collu GM, Kartnig F, Pieraks M, Vladimer GI, Heinz LX, Sedlyarov V, Schischlik F, Fauster A, Rebsamen M, Parapatics K, Blomen VA, Müller AC, Winter GE, Kralovics R, Brummelkamp TR, Mlodzik M, Superti-Furga G, (2018) "LZTR1 is a regulator of RAS ubiquitination and signaling." <i>Science</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30442766 30442766]; doi: [https://dx.doi.org/10.1126/science.aap8210 10.1126/science.aap8210]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30442766 20]. | ||
#Cominetti O, Núñez Galindo A, Corthésy J, Valsesia A, Irincheeva I, Kussmann M, Saris WHM, Astrup A, McPherson R, Harper ME, Dent R, Hager J, Dayon L, (2018) "Obesity shows preserved plasma proteome in large independent clinical cohorts." <i>Sci Rep</i> <b>8</b>(1):16981; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30451909 30451909]; doi: [https://dx.doi.org/10.1038/s41598-018-35321-7 10.1038/s41598-018-35321-7]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30451909 318]. | #Cominetti O, Núñez Galindo A, Corthésy J, Valsesia A, Irincheeva I, Kussmann M, Saris WHM, Astrup A, McPherson R, Harper ME, Dent R, Hager J, Dayon L, (2018) "Obesity shows preserved plasma proteome in large independent clinical cohorts." <i>Sci Rep</i> <b>8</b>(1):16981; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30451909 30451909]; doi: [https://dx.doi.org/10.1038/s41598-018-35321-7 10.1038/s41598-018-35321-7]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30451909 318]. | ||
+ | #Narzt MS, Nagelreiter IM, Oskolkova O, Bochkov VN, Latreille J, Fedorova M, Ni Z, Sialana FJ, Lubec G, Filzwieser M, Laggner M, Bilban M, Mildner M, Tschachler E, Grillari J, Gruber F, (2019) "A novel role for NUPR1 in the keratinocyte stress response to UV oxidized phospholipids." <i>Redox Biol</i> <b>20</b>:467–482; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30466060 30466060]; doi: [https://dx.doi.org/10.1016/j.redox.2018.11.006 10.1016/j.redox.2018.11.006]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30466060 18]. | ||
#Cavanagh JP, Pain M, Askarian F, Bruun JA, Urbarova I, Wai SN, Schmidt F, Johannessen M, (2018) "Comparative exoproteome profiling of an invasive and a commensal Staphylococcus haemolyticus isolate." <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30472255 30472255]; doi: [https://dx.doi.org/10.1016/j.jprot.2018.11.013 10.1016/j.jprot.2018.11.013]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30472255 12]. | #Cavanagh JP, Pain M, Askarian F, Bruun JA, Urbarova I, Wai SN, Schmidt F, Johannessen M, (2018) "Comparative exoproteome profiling of an invasive and a commensal Staphylococcus haemolyticus isolate." <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30472255 30472255]; doi: [https://dx.doi.org/10.1016/j.jprot.2018.11.013 10.1016/j.jprot.2018.11.013]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30472255 12]. | ||
#Zhu J, Garrigues L, Van den Toorn H, Stahl B, Heck AJR, (2018) "Discovery and quantification of non-human proteins in human milk." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30489082 30489082]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00550 10.1021/acs.jproteome.8b00550]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30489082 37]. | #Zhu J, Garrigues L, Van den Toorn H, Stahl B, Heck AJR, (2018) "Discovery and quantification of non-human proteins in human milk." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30489082 30489082]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00550 10.1021/acs.jproteome.8b00550]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30489082 37]. | ||
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#Roustan V, Weckwerth W, (2018) "Quantitative Phosphoproteomic and System-Level Analysis of TOR Inhibition Unravel Distinct Organellar Acclimation in <i>Chlamydomonas reinhardtii</i>." <i>Front Plant Sci</i> <b>9</b>:1590; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30546371 30546371]; doi: [https://dx.doi.org/10.3389/fpls.2018.01590 10.3389/fpls.2018.01590]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30546371 54]. | #Roustan V, Weckwerth W, (2018) "Quantitative Phosphoproteomic and System-Level Analysis of TOR Inhibition Unravel Distinct Organellar Acclimation in <i>Chlamydomonas reinhardtii</i>." <i>Front Plant Sci</i> <b>9</b>:1590; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30546371 30546371]; doi: [https://dx.doi.org/10.3389/fpls.2018.01590 10.3389/fpls.2018.01590]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30546371 54]. | ||
#Yao Z, Jia X, Megger DA, Chen J, Liu Y, Li J, Sitek B, Yuan Z, (2018) "Label-free Proteomic Analysis of Exosomes Secreted from THP-1-derived Macrophages Treated with IFN-α Identifies Antiviral Proteins Enriched in Exosomes." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30550287 30550287]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00514 10.1021/acs.jproteome.8b00514]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30550287 23]. | #Yao Z, Jia X, Megger DA, Chen J, Liu Y, Li J, Sitek B, Yuan Z, (2018) "Label-free Proteomic Analysis of Exosomes Secreted from THP-1-derived Macrophages Treated with IFN-α Identifies Antiviral Proteins Enriched in Exosomes." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30550287 30550287]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00514 10.1021/acs.jproteome.8b00514]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30550287 23]. | ||
+ | #Alves Feliciano C, Douché T, Giai Gianetto Q, Matondo M, Martin-Verstraete I, Dupuy B, (2019) "CotL, a new morphogenetic spore coat protein of Clostridium difficile." <i>Environ Microbiol</i> <b>21</b>(3):984–1003; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30556639 30556639]; doi: [https://dx.doi.org/10.1111/1462-2920.14505 10.1111/1462-2920.14505]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30556639 6]. | ||
#Yelamanchi SD, Tyagi A, Mohanty V, Dutta P, Korbonits M, Chavan S, Advani J, Madugundu AK, Dey G, Datta KK, Rajyalakshmi M, Sahasrabuddhe NA, Chaturvedi A, Kumar A, Das AA, Ghosh D, Jogdand GM, Nair HH, Saini K, Panchal M, Sarvaiya MA, Mohanraj SS, Sengupta N, Saxena P, Subramani PA, Kumar P, Akkali R, Reshma SV, Santhosh RS, Rastogi S, Kumar S, Ghosh SK, Irlapati VK, Srinivasan A, Radotra BD, Mathur PP, Wong GW, Satishchandra P, Chatterjee A, Gowda H, Bhansali A, Pandey A, Shankar SK, Mahadevan A, Prasad TSK, (2018) "Proteomic Analysis of the Human Anterior Pituitary Gland." <i>OMICS</i> <b>22</b>(12):759–769; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30571610 30571610]; doi: [https://dx.doi.org/10.1089/omi.2018.0160 10.1089/omi.2018.0160]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30571610 3]. | #Yelamanchi SD, Tyagi A, Mohanty V, Dutta P, Korbonits M, Chavan S, Advani J, Madugundu AK, Dey G, Datta KK, Rajyalakshmi M, Sahasrabuddhe NA, Chaturvedi A, Kumar A, Das AA, Ghosh D, Jogdand GM, Nair HH, Saini K, Panchal M, Sarvaiya MA, Mohanraj SS, Sengupta N, Saxena P, Subramani PA, Kumar P, Akkali R, Reshma SV, Santhosh RS, Rastogi S, Kumar S, Ghosh SK, Irlapati VK, Srinivasan A, Radotra BD, Mathur PP, Wong GW, Satishchandra P, Chatterjee A, Gowda H, Bhansali A, Pandey A, Shankar SK, Mahadevan A, Prasad TSK, (2018) "Proteomic Analysis of the Human Anterior Pituitary Gland." <i>OMICS</i> <b>22</b>(12):759–769; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30571610 30571610]; doi: [https://dx.doi.org/10.1089/omi.2018.0160 10.1089/omi.2018.0160]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30571610 3]. | ||
#Nanaware PP, Jurewicz MM, Leszyk J, Shaffer SA, Stern LJ, (2018) "HLA-DO modulates the diversity of the MHC-II self-peptidome." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30573663 30573663]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000956 10.1074/mcp.RA118.000956]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30573663 26]. | #Nanaware PP, Jurewicz MM, Leszyk J, Shaffer SA, Stern LJ, (2018) "HLA-DO modulates the diversity of the MHC-II self-peptidome." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30573663 30573663]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000956 10.1074/mcp.RA118.000956]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30573663 26]. | ||
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#Pfaff F, Hägglund S, Zoli M, Blaise-Boisseau S, Laloy E, Koethe S, Zühlke D, Riedel K, Zientara S, Bakkali-Kassimi L, Valarcher JF, Höper D, Beer M, Eschbaumer M, (2019) "Proteogenomics Uncovers Critical Elements of Host Response in Bovine Soft Palate Epithelial Cells Following In Vitro Infection with Foot-And-Mouth Disease Virus." <i>Viruses</i> <b>11</b>(1):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30642035 30642035]; doi: [https://dx.doi.org/10.3390/v11010053 10.3390/v11010053]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30642035 110]. | #Pfaff F, Hägglund S, Zoli M, Blaise-Boisseau S, Laloy E, Koethe S, Zühlke D, Riedel K, Zientara S, Bakkali-Kassimi L, Valarcher JF, Höper D, Beer M, Eschbaumer M, (2019) "Proteogenomics Uncovers Critical Elements of Host Response in Bovine Soft Palate Epithelial Cells Following In Vitro Infection with Foot-And-Mouth Disease Virus." <i>Viruses</i> <b>11</b>(1):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30642035 30642035]; doi: [https://dx.doi.org/10.3390/v11010053 10.3390/v11010053]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30642035 110]. | ||
#Kosack L, Wingelhofer B, Popa A, Orlova A, Agerer B, Vilagos B, Majek P, Parapatics K, Lercher A, Ringler A, Klughammer J, Smyth M, Khamina K, Baazim H, de Araujo ED, Rosa DA, Park J, Tin G, Ahmar S, Gunning PT, Bock C, Siddle HV, Woods GM, Kubicek S, Murchison EP, Bennett KL, Moriggl R, Bergthaler A, (2019) "The ERBB-STAT3 Axis Drives Tasmanian Devil Facial Tumor Disease." <i>Cancer Cell</i> <b>35</b>(1):125–139.e9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30645971 30645971]; doi: [https://dx.doi.org/10.1016/j.ccell.2018.11.018 10.1016/j.ccell.2018.11.018]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30645971 20]. | #Kosack L, Wingelhofer B, Popa A, Orlova A, Agerer B, Vilagos B, Majek P, Parapatics K, Lercher A, Ringler A, Klughammer J, Smyth M, Khamina K, Baazim H, de Araujo ED, Rosa DA, Park J, Tin G, Ahmar S, Gunning PT, Bock C, Siddle HV, Woods GM, Kubicek S, Murchison EP, Bennett KL, Moriggl R, Bergthaler A, (2019) "The ERBB-STAT3 Axis Drives Tasmanian Devil Facial Tumor Disease." <i>Cancer Cell</i> <b>35</b>(1):125–139.e9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30645971 30645971]; doi: [https://dx.doi.org/10.1016/j.ccell.2018.11.018 10.1016/j.ccell.2018.11.018]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30645971 20]. | ||
+ | #Liu Z, Lv J, Zhang Z, Li H, Yang B, Chen W, Dai X, Li X, Yang S, Liu L, Ou L, Ma Y, Zou X, (2019) "Integrative Transcriptome and Proteome Analysis Identifies Major Metabolic Pathways Involved in Pepper Fruit Development." <i>J Proteome Res</i> <b>18</b>(3):982–994; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30650966 30650966]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00673 10.1021/acs.jproteome.8b00673]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30650966 24]. | ||
#van Oorschot R, Hansen M, Koornneef JM, Marneth AE, Bergevoet SM, van Bergen MGJM, van Alphen FPJ, van der Zwaan C, Martens JHA, Vermeulen M, Jansen PWTC, Baltissen MPA, Laros-van Gorkom BAP, Janssen H, Jansen JH, von Lindern M, Meijer AB, van den Akker E, van der Reijden BA, (2019) "Molecular mechanisms of bleeding disorder-associated GFI1BQ287* mutation and its affected pathways in megakaryocytes and platelets." <i>Haematologica</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30655368 30655368]; doi: [https://dx.doi.org/10.3324/haematol.2018.194555 10.3324/haematol.2018.194555]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30655368 63]. | #van Oorschot R, Hansen M, Koornneef JM, Marneth AE, Bergevoet SM, van Bergen MGJM, van Alphen FPJ, van der Zwaan C, Martens JHA, Vermeulen M, Jansen PWTC, Baltissen MPA, Laros-van Gorkom BAP, Janssen H, Jansen JH, von Lindern M, Meijer AB, van den Akker E, van der Reijden BA, (2019) "Molecular mechanisms of bleeding disorder-associated GFI1BQ287* mutation and its affected pathways in megakaryocytes and platelets." <i>Haematologica</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30655368 30655368]; doi: [https://dx.doi.org/10.3324/haematol.2018.194555 10.3324/haematol.2018.194555]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30655368 63]. | ||
#Tsukada T, Isowa Y, Kito K, Yoshida S, Toneri S, Horiguchi K, Fujiwara K, Yashiro T, Kato T, Kato Y, (2019) "Identification of TGFβ-induced proteins in non-endocrine mouse pituitary cell line TtT/GF by SILAC-assisted quantitative mass spectrometry." <i>Cell Tissue Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30666536 30666536]; doi: [https://dx.doi.org/10.1007/s00441-018-02989-2 10.1007/s00441-018-02989-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30666536 11]. | #Tsukada T, Isowa Y, Kito K, Yoshida S, Toneri S, Horiguchi K, Fujiwara K, Yashiro T, Kato T, Kato Y, (2019) "Identification of TGFβ-induced proteins in non-endocrine mouse pituitary cell line TtT/GF by SILAC-assisted quantitative mass spectrometry." <i>Cell Tissue Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30666536 30666536]; doi: [https://dx.doi.org/10.1007/s00441-018-02989-2 10.1007/s00441-018-02989-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30666536 11]. | ||
#Gärtner SMK, Hundertmark T, Nolte H, Theofel I, Eren-Ghiani Z, Tetzner C, Duchow TB, Rathke C, Krüger M, Renkawitz-Pohl R, (2019) "Stage-specific testes proteomics of Drosophila melanogaster identifies essential proteins for male fertility." <i>Eur J Cell Biol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30679029 30679029]; doi: [https://dx.doi.org/10.1016/j.ejcb.2019.01.001 10.1016/j.ejcb.2019.01.001]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30679029 180]. | #Gärtner SMK, Hundertmark T, Nolte H, Theofel I, Eren-Ghiani Z, Tetzner C, Duchow TB, Rathke C, Krüger M, Renkawitz-Pohl R, (2019) "Stage-specific testes proteomics of Drosophila melanogaster identifies essential proteins for male fertility." <i>Eur J Cell Biol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30679029 30679029]; doi: [https://dx.doi.org/10.1016/j.ejcb.2019.01.001 10.1016/j.ejcb.2019.01.001]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30679029 180]. | ||
+ | #Hurcombe JA, Hartley P, Lay AC, Ni L, Bedford JJ, Leader JP, Singh S, Murphy A, Scudamore CL, Marquez E, Barrington AF, Pinto V, Marchetti M, Wong LF, Uney J, Saleem MA, Mathieson PW, Patel S, Walker RJ, Woodgett JR, Quaggin SE, Welsh GI, Coward RJM, (2019) "Podocyte GSK3 is an evolutionarily conserved critical regulator of kidney function." <i>Nat Commun</i> <b>10</b>(1):403; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30679422 30679422]; doi: [https://dx.doi.org/10.1038/s41467-018-08235-1 10.1038/s41467-018-08235-1]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30679422 1]. | ||
#Fornecker LM, Muller L, Bertrand F, Paul N, Pichot A, Herbrecht R, Chenard MP, Mauvieux L, Vallat L, Bahram S, Cianférani S, Carapito R, Carapito C, (2019) "Multi-omics dataset to decipher the complexity of drug resistance in diffuse large B-cell lymphoma." <i>Sci Rep</i> <b>9</b>(1):895; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30696890 30696890]; doi: [https://dx.doi.org/10.1038/s41598-018-37273-4 10.1038/s41598-018-37273-4]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30696890 20]. | #Fornecker LM, Muller L, Bertrand F, Paul N, Pichot A, Herbrecht R, Chenard MP, Mauvieux L, Vallat L, Bahram S, Cianférani S, Carapito R, Carapito C, (2019) "Multi-omics dataset to decipher the complexity of drug resistance in diffuse large B-cell lymphoma." <i>Sci Rep</i> <b>9</b>(1):895; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30696890 30696890]; doi: [https://dx.doi.org/10.1038/s41598-018-37273-4 10.1038/s41598-018-37273-4]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30696890 20]. | ||
#McKetney J, Runde RM, Hebert AS, Salamat S, Roy S, Coon JJ, (2019) "Proteomic Atlas of the Human Brain in Alzheimer's Disease." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30735395 30735395]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00004 10.1021/acs.jproteome.9b00004]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30735395 22]. | #McKetney J, Runde RM, Hebert AS, Salamat S, Roy S, Coon JJ, (2019) "Proteomic Atlas of the Human Brain in Alzheimer's Disease." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30735395 30735395]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00004 10.1021/acs.jproteome.9b00004]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30735395 22]. | ||
+ | #West KL, Byrum SD, Mackintosh SG, Edmondson RD, Taverna SD, Tackett AJ, (2019) "Proteomic characterization of the arsenic response locus in S. cerevisiae." <i>Epigenetics</i> <b>14</b>(2):130–145; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30739529 30739529]; doi: [https://dx.doi.org/10.1080/15592294.2019.1580110 10.1080/15592294.2019.1580110]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30739529 9]. | ||
+ | #Dikicioglu D, Nightingale DJH, Wood V, Lilley KS, Oliver SG, (2019) "Transcriptional regulation of the genes involved in protein metabolism and processing in Saccharomyces cerevisiae." <i>FEMS Yeast Res</i> <b>19</b>(2):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30753445 30753445]; doi: [https://dx.doi.org/10.1093/femsyr/foz014 10.1093/femsyr/foz014]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30753445 48]. | ||
+ | #Ramello MC, Benzaïd I, Kuenzi BM, Lienlaf-Moreno M, Kandell WM, Santiago DN, Pabón-Saldaña M, Darville L, Fang B, Rix U, Yoder S, Berglund A, Koomen JM, Haura EB, Abate-Daga D, (2019) "An immunoproteomic approach to characterize the CAR interactome and signalosome." <i>Sci Signal</i> <b>12</b>(568):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30755478 30755478]; doi: [https://dx.doi.org/10.1126/scisignal.aap9777 10.1126/scisignal.aap9777]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30755478 54]. | ||
#Furuyama K, Chera S, van Gurp L, Oropeza D, Ghila L, Damond N, Vethe H, Paulo JA, Joosten AM, Berney T, Bosco D, Dorrell C, Grompe M, Ræder H, Roep BO, Thorel F, Herrera PL, (2019) "Diabetes relief in mice by glucose-sensing insulin-secreting human α-cells." <i>Nature</i> <b>567</b>(7746):43–48; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30760930 30760930]; doi: [https://dx.doi.org/10.1038/s41586-019-0942-8 10.1038/s41586-019-0942-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30760930 1]. | #Furuyama K, Chera S, van Gurp L, Oropeza D, Ghila L, Damond N, Vethe H, Paulo JA, Joosten AM, Berney T, Bosco D, Dorrell C, Grompe M, Ræder H, Roep BO, Thorel F, Herrera PL, (2019) "Diabetes relief in mice by glucose-sensing insulin-secreting human α-cells." <i>Nature</i> <b>567</b>(7746):43–48; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30760930 30760930]; doi: [https://dx.doi.org/10.1038/s41586-019-0942-8 10.1038/s41586-019-0942-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30760930 1]. | ||
#Mohanty V, Subbannayya Y, Najar MA, Pinto SM, Kasaragod S, Karuppiah H, Sreeramulu B, Singh KK, Dalal S, Manikkoth S, Arunachalam C, Prasad TSK, Murthy KR, (2019) "Proteomics and Visual Health Research: Proteome of the Human Sclera Using High-Resolution Mass Spectrometry." <i>OMICS</i> <b>23</b>(2):98–110; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30767726 30767726]; doi: [https://dx.doi.org/10.1089/omi.2018.0185 10.1089/omi.2018.0185]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30767726 2]. | #Mohanty V, Subbannayya Y, Najar MA, Pinto SM, Kasaragod S, Karuppiah H, Sreeramulu B, Singh KK, Dalal S, Manikkoth S, Arunachalam C, Prasad TSK, Murthy KR, (2019) "Proteomics and Visual Health Research: Proteome of the Human Sclera Using High-Resolution Mass Spectrometry." <i>OMICS</i> <b>23</b>(2):98–110; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30767726 30767726]; doi: [https://dx.doi.org/10.1089/omi.2018.0185 10.1089/omi.2018.0185]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30767726 2]. | ||
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#Pauwels AM, Härtlova A, Peltier J, Driege Y, Baudelet G, Brodin P, Trost M, Beyaert R, Hoffmann E, (2019) "Spatiotemporal changes of the phagosomal proteome in dendritic cells in response to LPS stimulation." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30808727 30808727]; doi: [https://dx.doi.org/10.1074/mcp.RA119.001316 10.1074/mcp.RA119.001316]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30808727 20]. | #Pauwels AM, Härtlova A, Peltier J, Driege Y, Baudelet G, Brodin P, Trost M, Beyaert R, Hoffmann E, (2019) "Spatiotemporal changes of the phagosomal proteome in dendritic cells in response to LPS stimulation." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30808727 30808727]; doi: [https://dx.doi.org/10.1074/mcp.RA119.001316 10.1074/mcp.RA119.001316]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30808727 20]. | ||
#Angelidis I, Simon LM, Fernandez IE, Strunz M, Mayr CH, Greiffo FR, Tsitsiridis G, Ansari M, Graf E, Strom TM, Nagendran M, Desai T, Eickelberg O, Mann M, Theis FJ, Schiller HB, (2019) "An atlas of the aging lung mapped by single cell transcriptomics and deep tissue proteomics." <i>Nat Commun</i> <b>10</b>(1):963; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30814501 30814501]; doi: [https://dx.doi.org/10.1038/s41467-019-08831-9 10.1038/s41467-019-08831-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30814501 32]. | #Angelidis I, Simon LM, Fernandez IE, Strunz M, Mayr CH, Greiffo FR, Tsitsiridis G, Ansari M, Graf E, Strom TM, Nagendran M, Desai T, Eickelberg O, Mann M, Theis FJ, Schiller HB, (2019) "An atlas of the aging lung mapped by single cell transcriptomics and deep tissue proteomics." <i>Nat Commun</i> <b>10</b>(1):963; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30814501 30814501]; doi: [https://dx.doi.org/10.1038/s41467-019-08831-9 10.1038/s41467-019-08831-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30814501 32]. | ||
+ | #Yang W, Zhao X, Tao Y, Wu Y, He F, Tang L, (2019) "Proteomic analysis reveals a protective role of specific macrophage subsets in liver repair." <i>Sci Rep</i> <b>9</b>(1):2953; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30814596 30814596]; doi: [https://dx.doi.org/10.1038/s41598-019-39007-6 10.1038/s41598-019-39007-6]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30814596 40]. | ||
#Parker BL, Calkin AC, Seldin MM, Keating MF, Tarling EJ, Yang P, Moody SC, Liu Y, Zerenturk EJ, Needham EJ, Miller ML, Clifford BL, Morand P, Watt MJ, Meex RCR, Peng KY, Lee R, Jayawardana K, Pan C, Mellett NA, Weir JM, Lazarus R, Lusis AJ, Meikle PJ, James DE, de Aguiar Vallim TQ, Drew BG, (2019) "An integrative systems genetic analysis of mammalian lipid metabolism." <i>Nature</i> <b>567</b>(7747):187–193; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30814737 30814737]; doi: [https://dx.doi.org/10.1038/s41586-019-0984-y 10.1038/s41586-019-0984-y]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30814737 78]. | #Parker BL, Calkin AC, Seldin MM, Keating MF, Tarling EJ, Yang P, Moody SC, Liu Y, Zerenturk EJ, Needham EJ, Miller ML, Clifford BL, Morand P, Watt MJ, Meex RCR, Peng KY, Lee R, Jayawardana K, Pan C, Mellett NA, Weir JM, Lazarus R, Lusis AJ, Meikle PJ, James DE, de Aguiar Vallim TQ, Drew BG, (2019) "An integrative systems genetic analysis of mammalian lipid metabolism." <i>Nature</i> <b>567</b>(7747):187–193; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30814737 30814737]; doi: [https://dx.doi.org/10.1038/s41586-019-0984-y 10.1038/s41586-019-0984-y]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30814737 78]. | ||
#Jiang Y, Sun A, Zhao Y, Ying W, Sun H, Yang X, Xing B, Sun W, Ren L, Hu B, Li C, Zhang L, Qin G, Zhang M, Chen N, Zhang M, Huang Y, Zhou J, Zhao Y, Liu M, Zhu X, Qiu Y, Sun Y, Huang C, Yan M, Wang M, Liu W, Tian F, Xu H, Zhou J, Wu Z, Shi T, Zhu W, Qin J, Xie L, Fan J, Qian X, He F, Chinese Human Proteome Project (CNHPP) Consortium., (2019) "Proteomics identifies new therapeutic targets of early-stage hepatocellular carcinoma." <i>Nature</i> <b>567</b>(7747):257–261; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30814741 30814741]; doi: [https://dx.doi.org/10.1038/s41586-019-0987-8 10.1038/s41586-019-0987-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30814741 688]. | #Jiang Y, Sun A, Zhao Y, Ying W, Sun H, Yang X, Xing B, Sun W, Ren L, Hu B, Li C, Zhang L, Qin G, Zhang M, Chen N, Zhang M, Huang Y, Zhou J, Zhao Y, Liu M, Zhu X, Qiu Y, Sun Y, Huang C, Yan M, Wang M, Liu W, Tian F, Xu H, Zhou J, Wu Z, Shi T, Zhu W, Qin J, Xie L, Fan J, Qian X, He F, Chinese Human Proteome Project (CNHPP) Consortium., (2019) "Proteomics identifies new therapeutic targets of early-stage hepatocellular carcinoma." <i>Nature</i> <b>567</b>(7747):257–261; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30814741 30814741]; doi: [https://dx.doi.org/10.1038/s41586-019-0987-8 10.1038/s41586-019-0987-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30814741 688]. | ||
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#Hansen BK, Gupta R, Baldus L, Lyon D, Narita T, Lammers M, Choudhary C, Weinert BT, (2019) "Analysis of human acetylation stoichiometry defines mechanistic constraints on protein regulation." <i>Nat Commun</i> <b>10</b>(1):1055; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30837475 30837475]; doi: [https://dx.doi.org/10.1038/s41467-019-09024-0 10.1038/s41467-019-09024-0]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30837475 123]. | #Hansen BK, Gupta R, Baldus L, Lyon D, Narita T, Lammers M, Choudhary C, Weinert BT, (2019) "Analysis of human acetylation stoichiometry defines mechanistic constraints on protein regulation." <i>Nat Commun</i> <b>10</b>(1):1055; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30837475 30837475]; doi: [https://dx.doi.org/10.1038/s41467-019-09024-0 10.1038/s41467-019-09024-0]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30837475 123]. | ||
#Marei WFA, Van Raemdonck G, Baggerman G, Bols PEJ, Leroy JLMR, (2019) "Proteomic changes in oocytes after in vitro maturation in lipotoxic conditions are different from those in cumulus cells." <i>Sci Rep</i> <b>9</b>(1):3673; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30842615 30842615]; doi: [https://dx.doi.org/10.1038/s41598-019-40122-7 10.1038/s41598-019-40122-7]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30842615 2]. | #Marei WFA, Van Raemdonck G, Baggerman G, Bols PEJ, Leroy JLMR, (2019) "Proteomic changes in oocytes after in vitro maturation in lipotoxic conditions are different from those in cumulus cells." <i>Sci Rep</i> <b>9</b>(1):3673; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30842615 30842615]; doi: [https://dx.doi.org/10.1038/s41598-019-40122-7 10.1038/s41598-019-40122-7]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30842615 2]. | ||
+ | #Yi L, Tsai CF, Dirice E, Swensen AC, Chen J, Shi T, Gritsenko MA, Chu RK, Piehowski PD, Smith RD, Rodland KD, Atkinson MA, Mathews CE, Kulkarni RN, Liu T, Qian WJ, (2019) "Boosting to Amplify Signal with Isobaric Labeling (BASIL) Strategy for Comprehensive Quantitative Phosphoproteomic Characterization of Small Populations of Cells." <i>Anal Chem</i> <b>91</b>(9):5794–5801; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30843680 30843680]; doi: [https://dx.doi.org/10.1021/acs.analchem.9b00024 10.1021/acs.analchem.9b00024]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30843680 20]. | ||
#Lin YH, Eguez RV, Torralba MG, Singh H, Golusinski P, Golusinski W, Masternak M, Nelson KE, Freire M, Yu Y, (2019) "Self-Assembled STrap for Global Proteomics and Salivary Biomarker Discovery." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30848925 30848925]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00037 10.1021/acs.jproteome.9b00037]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30848925 51]. | #Lin YH, Eguez RV, Torralba MG, Singh H, Golusinski P, Golusinski W, Masternak M, Nelson KE, Freire M, Yu Y, (2019) "Self-Assembled STrap for Global Proteomics and Salivary Biomarker Discovery." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30848925 30848925]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00037 10.1021/acs.jproteome.9b00037]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30848925 51]. | ||
#Herbst FA, Gonçalves SCL, Behr T, McIlroy SJ, Nielsen PH, (2019) "Proteogenomic Refinement of the Neomegalonema perideroedes<sup>T</sup> Genome Annotation." <i>Proteomics</i> <b></b>:e1800330; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30865376 30865376]; doi: [https://dx.doi.org/10.1002/pmic.201800330 10.1002/pmic.201800330]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30865376 9]. | #Herbst FA, Gonçalves SCL, Behr T, McIlroy SJ, Nielsen PH, (2019) "Proteogenomic Refinement of the Neomegalonema perideroedes<sup>T</sup> Genome Annotation." <i>Proteomics</i> <b></b>:e1800330; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30865376 30865376]; doi: [https://dx.doi.org/10.1002/pmic.201800330 10.1002/pmic.201800330]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30865376 9]. | ||
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#Betancourt LH, Pawłowski K, Eriksson J, Szasz AM, Mitra S, Pla I, Welinder C, Ekedahl H, Broberg P, Appelqvist R, Yakovleva M, Sugihara Y, Miharada K, Ingvar C, Lundgren L, Baldetorp B, Olsson H, Rezeli M, Wieslander E, Horvatovich P, Malm J, Jönsson G, Marko-Varga G, (2019) "Improved survival prognostication of node-positive malignant melanoma patients utilizing shotgun proteomics guided by histopathological characterization and genomic data." <i>Sci Rep</i> <b>9</b>(1):5154; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30914758 30914758]; doi: [https://dx.doi.org/10.1038/s41598-019-41625-z 10.1038/s41598-019-41625-z]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30914758 111]. | #Betancourt LH, Pawłowski K, Eriksson J, Szasz AM, Mitra S, Pla I, Welinder C, Ekedahl H, Broberg P, Appelqvist R, Yakovleva M, Sugihara Y, Miharada K, Ingvar C, Lundgren L, Baldetorp B, Olsson H, Rezeli M, Wieslander E, Horvatovich P, Malm J, Jönsson G, Marko-Varga G, (2019) "Improved survival prognostication of node-positive malignant melanoma patients utilizing shotgun proteomics guided by histopathological characterization and genomic data." <i>Sci Rep</i> <b>9</b>(1):5154; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30914758 30914758]; doi: [https://dx.doi.org/10.1038/s41598-019-41625-z 10.1038/s41598-019-41625-z]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30914758 111]. | ||
#Sinclair LV, Howden AJ, Brenes A, Spinelli L, Hukelmann JL, Macintyre AN, Liu X, Thomson S, Taylor PM, Rathmell JC, Locasale JW, Lamond AI, Cantrell DA, (2019) "Antigen receptor control of methionine metabolism in T cells." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30916644 30916644]; doi: [https://dx.doi.org/10.7554/eLife.44210 10.7554/eLife.44210]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30916644 7]. | #Sinclair LV, Howden AJ, Brenes A, Spinelli L, Hukelmann JL, Macintyre AN, Liu X, Thomson S, Taylor PM, Rathmell JC, Locasale JW, Lamond AI, Cantrell DA, (2019) "Antigen receptor control of methionine metabolism in T cells." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30916644 30916644]; doi: [https://dx.doi.org/10.7554/eLife.44210 10.7554/eLife.44210]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30916644 7]. | ||
+ | #Lofthouse EM, Torrens C, Manousopoulou A, Nahar M, Cleal JK, O'Kelly IM, Sengers BG, Garbis SD, Lewis RM, (2019) "Ursodeoxycholic acid inhibits uptake and vasoconstrictor effects of taurocholate in human placenta." <i>FASEB J</i> <b>33</b>(7):8211–8220; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30922127 30922127]; doi: [https://dx.doi.org/10.1096/fj.201900015RR 10.1096/fj.201900015RR]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30922127 1]. | ||
#Chachami G, Stankovic-Valentin N, Karagiota A, Basagianni A, Plessmann U, Urlaub H, Melchior F, Simos G, (2019) "Hypoxia-induced changes in SUMO conjugation affect transcriptional regulation under low oxygen." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30926672 30926672]; doi: [https://dx.doi.org/10.1074/mcp.RA119.001401 10.1074/mcp.RA119.001401]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30926672 69]. | #Chachami G, Stankovic-Valentin N, Karagiota A, Basagianni A, Plessmann U, Urlaub H, Melchior F, Simos G, (2019) "Hypoxia-induced changes in SUMO conjugation affect transcriptional regulation under low oxygen." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30926672 30926672]; doi: [https://dx.doi.org/10.1074/mcp.RA119.001401 10.1074/mcp.RA119.001401]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30926672 69]. | ||
#Musiani D, Bok J, Massignani E, Wu L, Tabaglio T, Ippolito MR, Cuomo A, Ozbek U, Zorgati H, Ghoshdastider U, Robinson RC, Guccione E, Bonaldi T, (2019) "Proteomics profiling of arginine methylation defines PRMT5 substrate specificity." <i>Sci Signal</i> <b>12</b>(575):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30940768 30940768]; doi: [https://dx.doi.org/10.1126/scisignal.aat8388 10.1126/scisignal.aat8388]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30940768 76]. | #Musiani D, Bok J, Massignani E, Wu L, Tabaglio T, Ippolito MR, Cuomo A, Ozbek U, Zorgati H, Ghoshdastider U, Robinson RC, Guccione E, Bonaldi T, (2019) "Proteomics profiling of arginine methylation defines PRMT5 substrate specificity." <i>Sci Signal</i> <b>12</b>(575):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30940768 30940768]; doi: [https://dx.doi.org/10.1126/scisignal.aat8388 10.1126/scisignal.aat8388]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30940768 76]. | ||
#Yang M, Vesterlund M, Siavelis I, Moura-Castro LH, Castor A, Fioretos T, Jafari R, Lilljebjörn H, Odom DT, Olsson L, Ravi N, Woodward EL, Harewood L, Lehtiö J, Paulsson K, (2019) "Proteogenomics and Hi-C reveal transcriptional dysregulation in high hyperdiploid childhood acute lymphoblastic leukemia." <i>Nat Commun</i> <b>10</b>(1):1519; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30944321 30944321]; doi: [https://dx.doi.org/10.1038/s41467-019-09469-3 10.1038/s41467-019-09469-3]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30944321 3]. | #Yang M, Vesterlund M, Siavelis I, Moura-Castro LH, Castor A, Fioretos T, Jafari R, Lilljebjörn H, Odom DT, Olsson L, Ravi N, Woodward EL, Harewood L, Lehtiö J, Paulsson K, (2019) "Proteogenomics and Hi-C reveal transcriptional dysregulation in high hyperdiploid childhood acute lymphoblastic leukemia." <i>Nat Commun</i> <b>10</b>(1):1519; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30944321 30944321]; doi: [https://dx.doi.org/10.1038/s41467-019-09469-3 10.1038/s41467-019-09469-3]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30944321 3]. | ||
#Johansson HJ, Socciarelli F, Vacanti NM, Haugen MH, Zhu Y, Siavelis I, Fernandez-Woodbridge A, Aure MR, Sennblad B, Vesterlund M, Branca RM, Orre LM, Huss M, Fredlund E, Beraki E, Garred Ø, Boekel J, Sauer T, Zhao W, Nord S, Höglander EK, Jans DC, Brismar H, Haukaas TH, Bathen TF, Schlichting E, Naume B, Consortia Oslo Breast Cancer Research Consortium (OSBREAC)., Luders T, Borgen E, Kristensen VN, Russnes HG, Lingjærde OC, Mills GB, Sahlberg KK, Børresen-Dale AL, Lehtiö J, (2019) "Breast cancer quantitative proteome and proteogenomic landscape." <i>Nat Commun</i> <b>10</b>(1):1600; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30962452 30962452]; doi: [https://dx.doi.org/10.1038/s41467-019-09018-y 10.1038/s41467-019-09018-y]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30962452 12]. | #Johansson HJ, Socciarelli F, Vacanti NM, Haugen MH, Zhu Y, Siavelis I, Fernandez-Woodbridge A, Aure MR, Sennblad B, Vesterlund M, Branca RM, Orre LM, Huss M, Fredlund E, Beraki E, Garred Ø, Boekel J, Sauer T, Zhao W, Nord S, Höglander EK, Jans DC, Brismar H, Haukaas TH, Bathen TF, Schlichting E, Naume B, Consortia Oslo Breast Cancer Research Consortium (OSBREAC)., Luders T, Borgen E, Kristensen VN, Russnes HG, Lingjærde OC, Mills GB, Sahlberg KK, Børresen-Dale AL, Lehtiö J, (2019) "Breast cancer quantitative proteome and proteogenomic landscape." <i>Nat Commun</i> <b>10</b>(1):1600; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30962452 30962452]; doi: [https://dx.doi.org/10.1038/s41467-019-09018-y 10.1038/s41467-019-09018-y]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30962452 12]. | ||
+ | #Zecha J, Satpathy S, Kanashova T, Avanessian SC, Kane MH, Clauser KR, Mertins P, Carr SA, Kuster B, (2019) "TMT Labeling for the Masses: A Robust and Cost-efficient, In-solution Labeling Approach." <i>Mol Cell Proteomics</i> <b>18</b>(7):1468–1478; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30967486 30967486]; doi: [https://dx.doi.org/10.1074/mcp.TIR119.001385 10.1074/mcp.TIR119.001385]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30967486 28]. | ||
#Erhart F, Weiss T, Klingenbrunner S, Fischhuber K, Reitermaier R, Halfmann A, Blauensteiner B, Lötsch D, Spiegl-Kreinecker S, Berger W, Sialana FJ, Lubec G, Felzmann T, Dohnal A, Visus C, (2019) "Spheroid glioblastoma culture conditions as antigen source for dendritic cell-based immunotherapy: spheroid proteins are survival-relevant targets but can impair immunogenic interferon γ production." <i>Cytotherapy</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30975602 30975602]; doi: [https://dx.doi.org/10.1016/j.jcyt.2019.03.002 10.1016/j.jcyt.2019.03.002]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30975602 8]. | #Erhart F, Weiss T, Klingenbrunner S, Fischhuber K, Reitermaier R, Halfmann A, Blauensteiner B, Lötsch D, Spiegl-Kreinecker S, Berger W, Sialana FJ, Lubec G, Felzmann T, Dohnal A, Visus C, (2019) "Spheroid glioblastoma culture conditions as antigen source for dendritic cell-based immunotherapy: spheroid proteins are survival-relevant targets but can impair immunogenic interferon γ production." <i>Cytotherapy</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30975602 30975602]; doi: [https://dx.doi.org/10.1016/j.jcyt.2019.03.002 10.1016/j.jcyt.2019.03.002]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30975602 8]. | ||
+ | #Karim N, Durbin-Johnson B, Rocke DM, Salemi M, Phinney BS, Naeem M, Rice RH, (2019) "Proteomic manifestations of genetic defects in autosomal recessive congenital ichthyosis." <i>J Proteomics</i> <b>201</b>:104–109; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30978464 30978464]; doi: [https://dx.doi.org/10.1016/j.jprot.2019.04.007 10.1016/j.jprot.2019.04.007]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30978464 96]. | ||
#Na CH, Sharma N, Madugundu AK, Chen R, Atalar Aksit M, Rosson GD, Cutting GR, Pandey A, (2019) "Integrated transcriptomic and proteomic analysis of human eccrine sweat glands identifies missing and novel proteins." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30979791 30979791]; doi: [https://dx.doi.org/10.1074/mcp.RA118.001101 10.1074/mcp.RA118.001101]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30979791 3]. | #Na CH, Sharma N, Madugundu AK, Chen R, Atalar Aksit M, Rosson GD, Cutting GR, Pandey A, (2019) "Integrated transcriptomic and proteomic analysis of human eccrine sweat glands identifies missing and novel proteins." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30979791 30979791]; doi: [https://dx.doi.org/10.1074/mcp.RA118.001101 10.1074/mcp.RA118.001101]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30979791 3]. | ||
#Guergues J, Zhang P, Liu B, Stevens SM Jr, (2019) "Improved Methodology for Sensitive and Rapid Quantitative Proteomic Analysis of Adult-Derived Mouse Microglia: Application to a Novel In Vitro Mouse Microglial Cell Model." <i>Proteomics</i> <b></b>:e1800469; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30980500 30980500]; doi: [https://dx.doi.org/10.1002/pmic.201800469 10.1002/pmic.201800469]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30980500 6]. | #Guergues J, Zhang P, Liu B, Stevens SM Jr, (2019) "Improved Methodology for Sensitive and Rapid Quantitative Proteomic Analysis of Adult-Derived Mouse Microglia: Application to a Novel In Vitro Mouse Microglial Cell Model." <i>Proteomics</i> <b></b>:e1800469; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30980500 30980500]; doi: [https://dx.doi.org/10.1002/pmic.201800469 10.1002/pmic.201800469]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30980500 6]. | ||
+ | #Madugundu AK, Na CH, Nirujogi RS, Renuse S, Kim KP, Burns KH, Wilks C, Langmead B, Ellis SE, Collado-Torres L, Halushka MK, Kim MS, Pandey A, (2019) "Integrated Transcriptomic and Proteomic Analysis of Primary Human Umbilical Vein Endothelial Cells." <i>Proteomics</i> <b></b>:e1800315; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30983154 30983154]; doi: [https://dx.doi.org/10.1002/pmic.201800315 10.1002/pmic.201800315]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30983154 2]. | ||
#Zhou B, Yan Y, Wang Y, You S, Freeman MR, Yang W, (2019) "Quantitative proteomic analysis of prostate tissue specimens identifies deregulated protein complexes in primary prostate cancer." <i>Clin Proteomics</i> <b>16</b>:15; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31011308 31011308]; doi: [https://dx.doi.org/10.1186/s12014-019-9236-2 10.1186/s12014-019-9236-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31011308 2]. | #Zhou B, Yan Y, Wang Y, You S, Freeman MR, Yang W, (2019) "Quantitative proteomic analysis of prostate tissue specimens identifies deregulated protein complexes in primary prostate cancer." <i>Clin Proteomics</i> <b>16</b>:15; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31011308 31011308]; doi: [https://dx.doi.org/10.1186/s12014-019-9236-2 10.1186/s12014-019-9236-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31011308 2]. | ||
#Trzeciecka A, Bhattacharya SK, (2019) "Dataset of growth cone-enriched lipidome and proteome of embryonic to early postnatal mouse brain." <i>Data Brief</i> <b>24</b>:103865; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31016214 31016214]; doi: [https://dx.doi.org/10.1016/j.dib.2019.103865 10.1016/j.dib.2019.103865]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31016214 120]. | #Trzeciecka A, Bhattacharya SK, (2019) "Dataset of growth cone-enriched lipidome and proteome of embryonic to early postnatal mouse brain." <i>Data Brief</i> <b>24</b>:103865; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31016214 31016214]; doi: [https://dx.doi.org/10.1016/j.dib.2019.103865 10.1016/j.dib.2019.103865]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31016214 120]. | ||
+ | #Masoumi Z, Maes GE, Herten K, Cortés-Calabuig Á, Alattar AG, Hanson E, Erlandsson L, Mezey E, Magnusson M, Vermeesch JR, Familari M, Hansson SR, (2019) "Preeclampsia is Associated with Sex-Specific Transcriptional and Proteomic Changes in Fetal Erythroid Cells." <i>Int J Mol Sci</i> <b>20</b>(8):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31027199 31027199]; doi: [https://dx.doi.org/10.3390/ijms20082038 10.3390/ijms20082038]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31027199 20]. | ||
+ | #Quintieri L, Zühlke D, Fanelli F, Caputo L, Liuzzi VC, Logrieco AF, Hirschfeld C, Becher D, Riedel K, (2019) "Proteomic analysis of the food spoiler Pseudomonas fluorescens ITEM 17298 reveals the antibiofilm activity of the pepsin-digested bovine lactoferrin." <i>Food Microbiol</i> <b>82</b>:177–193; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31027772 31027772]; doi: [https://dx.doi.org/10.1016/j.fm.2019.02.003 10.1016/j.fm.2019.02.003]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31027772 110]. | ||
#Löffler MW, Mohr C, Bichmann L, Freudenmann LK, Walzer M, Schroeder CM, Trautwein N, Hilke FJ, Zinser RS, Mühlenbruch L, Kowalewski DJ, Schuster H, Sturm M, Matthes J, Riess O, Czemmel S, Nahnsen S, Königsrainer I, Thiel K, Nadalin S, Beckert S, Bösmüller H, Fend F, Velic A, Maček B, Haen SP, Buonaguro L, Kohlbacher O, Stevanović S, Königsrainer A, HEPAVAC Consortium., Rammensee HG, (2019) "Multi-omics discovery of exome-derived neoantigens in hepatocellular carcinoma." <i>Genome Med</i> <b>11</b>(1):28; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31039795 31039795]; doi: [https://dx.doi.org/10.1186/s13073-019-0636-8 10.1186/s13073-019-0636-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31039795 178]. | #Löffler MW, Mohr C, Bichmann L, Freudenmann LK, Walzer M, Schroeder CM, Trautwein N, Hilke FJ, Zinser RS, Mühlenbruch L, Kowalewski DJ, Schuster H, Sturm M, Matthes J, Riess O, Czemmel S, Nahnsen S, Königsrainer I, Thiel K, Nadalin S, Beckert S, Bösmüller H, Fend F, Velic A, Maček B, Haen SP, Buonaguro L, Kohlbacher O, Stevanović S, Königsrainer A, HEPAVAC Consortium., Rammensee HG, (2019) "Multi-omics discovery of exome-derived neoantigens in hepatocellular carcinoma." <i>Genome Med</i> <b>11</b>(1):28; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31039795 31039795]; doi: [https://dx.doi.org/10.1186/s13073-019-0636-8 10.1186/s13073-019-0636-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31039795 178]. | ||
+ | #Eckert MA, Coscia F, Chryplewicz A, Chang JW, Hernandez KM, Pan S, Tienda SM, Nahotko DA, Li G, Blaženović I, Lastra RR, Curtis M, Yamada SD, Perets R, McGregor SM, Andrade J, Fiehn O, Moellering RE, Mann M, Lengyel E, (2019) "Proteomics reveals NNMT as a master metabolic regulator of cancer-associated fibroblasts." <i>Nature</i> <b>569</b>(7758):723–728; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31043742 31043742]; doi: [https://dx.doi.org/10.1038/s41586-019-1173-8 10.1038/s41586-019-1173-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31043742 107]. | ||
#Chen F, Welker F, Shen CC, Bailey SE, Bergmann I, Davis S, Xia H, Wang H, Fischer R, Freidline SE, Yu TL, Skinner MM, Stelzer S, Dong G, Fu Q, Dong G, Wang J, Zhang D, Hublin JJ, (2019) "A late Middle Pleistocene Denisovan mandible from the Tibetan Plateau." <i>Nature</i> <b>569</b>(7756):409–412; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31043746 31043746]; doi: [https://dx.doi.org/10.1038/s41586-019-1139-x 10.1038/s41586-019-1139-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31043746 8]. | #Chen F, Welker F, Shen CC, Bailey SE, Bergmann I, Davis S, Xia H, Wang H, Fischer R, Freidline SE, Yu TL, Skinner MM, Stelzer S, Dong G, Fu Q, Dong G, Wang J, Zhang D, Hublin JJ, (2019) "A late Middle Pleistocene Denisovan mandible from the Tibetan Plateau." <i>Nature</i> <b>569</b>(7756):409–412; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31043746 31043746]; doi: [https://dx.doi.org/10.1038/s41586-019-1139-x 10.1038/s41586-019-1139-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31043746 8]. | ||
#Dybas JM, O'Leary CE, Ding H, Spruce LA, Seeholzer SH, Oliver PM, (2019) "Integrative proteomics reveals an increase in non-degradative ubiquitylation in activated CD4<sup>+</sup> T cells." <i>Nat Immunol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31061531 31061531]; doi: [https://dx.doi.org/10.1038/s41590-019-0381-6 10.1038/s41590-019-0381-6]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31061531 118]. | #Dybas JM, O'Leary CE, Ding H, Spruce LA, Seeholzer SH, Oliver PM, (2019) "Integrative proteomics reveals an increase in non-degradative ubiquitylation in activated CD4<sup>+</sup> T cells." <i>Nat Immunol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31061531 31061531]; doi: [https://dx.doi.org/10.1038/s41590-019-0381-6 10.1038/s41590-019-0381-6]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31061531 118]. | ||
+ | #Papaioannou MD, Djuric U, Kao J, Karimi S, Zadeh G, Aldape K, Diamandis P, (2019) "Proteomic analysis of meningiomas reveals clinically-distinct molecular patterns." <i>Neuro Oncol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31077268 31077268]; doi: [https://dx.doi.org/10.1093/neuonc/noz084 10.1093/neuonc/noz084]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31077268 78]. | ||
+ | #Spörrer M, Prochnicki A, Tölle RC, Nyström A, Esser PR, Homberg M, Athanasiou I, Zingkou E, Schilling A, Gerum R, Thievessen I, Winter L, Bruckner-Tuderman L, Fabry B, Magin TM, Dengjel J, Schröder R, Kiritsi D, (2019) "Treatment of keratinocytes with 4-phenylbutyrate in epidermolysis bullosa: Lessons for therapies in keratin disorders." <i>EBioMedicine</i> <b>44</b>:502–515; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31078522 31078522]; doi: [https://dx.doi.org/10.1016/j.ebiom.2019.04.062 10.1016/j.ebiom.2019.04.062]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31078522 41]. | ||
#Wang H, Sheehan RP, Palmer AC, Everley RA, Boswell SA, Ron-Harel N, Ringel AE, Holton KM, Jacobson CA, Erickson AR, Maliszewski L, Haigis MC, Sorger PK, (2019) "Adaptation of Human iPSC-Derived Cardiomyocytes to Tyrosine Kinase Inhibitors Reduces Acute Cardiotoxicity via Metabolic Reprogramming." <i>Cell Syst</i> <b>8</b>(5):412–426.e7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31078528 31078528]; doi: [https://dx.doi.org/10.1016/j.cels.2019.03.009 10.1016/j.cels.2019.03.009]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31078528 24]. | #Wang H, Sheehan RP, Palmer AC, Everley RA, Boswell SA, Ron-Harel N, Ringel AE, Holton KM, Jacobson CA, Erickson AR, Maliszewski L, Haigis MC, Sorger PK, (2019) "Adaptation of Human iPSC-Derived Cardiomyocytes to Tyrosine Kinase Inhibitors Reduces Acute Cardiotoxicity via Metabolic Reprogramming." <i>Cell Syst</i> <b>8</b>(5):412–426.e7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31078528 31078528]; doi: [https://dx.doi.org/10.1016/j.cels.2019.03.009 10.1016/j.cels.2019.03.009]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31078528 24]. | ||
+ | #Murphy JP, Kim Y, Clements DR, Konda P, Schuster H, Kowalewski DJ, Paulo JA, Cohen AM, Stevanovic S, Gygi SP, Gujar S, (2019) "Therapy-Induced MHC I Ligands Shape Neo-Antitumor CD8 T Cell Responses during Oncolytic Virus-Based Cancer Immunotherapy." <i>J Proteome Res</i> <b>18</b>(6):2666–2675; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31095916 31095916]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00173 10.1021/acs.jproteome.9b00173]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31095916 11]. | ||
+ | #Ott E, Kawaguchi Y, Özgen N, Yamagishi A, Rabbow E, Rettberg P, Weckwerth W, Milojevic T, (2019) "Proteomic and Metabolomic Profiling of <i>Deinococcus radiodurans</i> Recovering After Exposure to Simulated Low Earth Orbit Vacuum Conditions." <i>Front Microbiol</i> <b>10</b>:909; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31110498 31110498]; doi: [https://dx.doi.org/10.3389/fmicb.2019.00909 10.3389/fmicb.2019.00909]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31110498 17]. | ||
#Chu F, Mason KE, Anex DS, Jones AD, Hart BR, (2019) "Hair Proteome Variation at Different Body Locations on Genetically Variant Peptide Detection for Protein-Based Human Identification." <i>Sci Rep</i> <b>9</b>(1):7641; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31113963 31113963]; doi: [https://dx.doi.org/10.1038/s41598-019-44007-7 10.1038/s41598-019-44007-7]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31113963 36]. | #Chu F, Mason KE, Anex DS, Jones AD, Hart BR, (2019) "Hair Proteome Variation at Different Body Locations on Genetically Variant Peptide Detection for Protein-Based Human Identification." <i>Sci Rep</i> <b>9</b>(1):7641; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31113963 31113963]; doi: [https://dx.doi.org/10.1038/s41598-019-44007-7 10.1038/s41598-019-44007-7]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31113963 36]. | ||
+ | #Charitou T, Srihari S, Lynn MA, Jarboui MA, Fasterius E, Moldovan M, Shirasawa S, Tsunoda T, Ueffing M, Xie J, Xin J, Wang X, Proud CG, Boldt K, Al-Khalili Szigyarto C, Kolch W, Lynn DJ, (2019) "Transcriptional and metabolic rewiring of colorectal cancer cells expressing the oncogenic KRAS<sup>G13D</sup> mutation." <i>Br J Cancer</i> <b>121</b>(1):37–50; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31133691 31133691]; doi: [https://dx.doi.org/10.1038/s41416-019-0477-7 10.1038/s41416-019-0477-7]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31133691 523]. | ||
+ | #Sap KA, Guler AT, Bezstarosti K, Bury AE, Juenemann K, Demmers J, Reits E, (2019) "Global Proteome and Ubiquitinome Changes in the Soluble and Insoluble Fractions of Q175 Huntington Mice Brains." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31138642 31138642]; doi: [https://dx.doi.org/10.1074/mcp.RA119.001486 10.1074/mcp.RA119.001486]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31138642 64]. | ||
+ | #Pladevall-Morera D, Munk S, Ingham A, Garribba L, Albers E, Liu Y, Olsen JV, Lopez-Contreras AJ, (2019) "Proteomic characterization of chromosomal common fragile site (CFS)-associated proteins uncovers ATRX as a regulator of CFS stability." <i>Nucleic Acids Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31180492 31180492]; doi: [https://dx.doi.org/10.1093/nar/gkz510 10.1093/nar/gkz510]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31180492 32]. | ||
+ | #Wang Y, Tatham MH, Schmidt-Heck W, Swann C, Singh-Dolt K, Meseguer-Ripolles J, Lucendo-Villarin B, Kunath T, Rudd TR, Smith AJH, Hengstler JG, Godoy P, Hay RT, Hay DC, (2019) "Multiomics Analyses of HNF4α Protein Domain Function during Human Pluripotent Stem Cell Differentiation." <i>iScience</i> <b>16</b>:206–217; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31185456 31185456]; doi: [https://dx.doi.org/10.1016/j.isci.2019.05.028 10.1016/j.isci.2019.05.028]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31185456 96]. | ||
+ | #Ma F, Tremmel DM, Li Z, Lietz CB, Sackett SD, Odorico JS, Li L, (2019) "In-depth quantification of extracellular matrix proteins from human pancreas." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31200599 31200599]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00241 10.1021/acs.jproteome.9b00241]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31200599 30]. | ||
+ | #Mendonça CF, Kuras M, Nogueira FCS, Plá I, Hortobágyi T, Csiba L, Palkovits M, Renner É, Döme P, Marko-Varga G, Domont GB, Rezeli M, (2019) "Proteomic signatures of brain regions affected by tau pathology in early and late stages of Alzheimer's disease." <i>Neurobiol Dis</i> <b>130</b>:104509; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31207390 31207390]; doi: [https://dx.doi.org/10.1016/j.nbd.2019.104509 10.1016/j.nbd.2019.104509]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31207390 367]. | ||
+ | #Abdelhamed S, Butler JT, Doron B, Halse A, Nemecek E, Wilmarth PA, Marks DL, Chang BH, Horton T, Kurre P, (2019) "Extracellular vesicles impose quiescence on residual hematopoietic stem cells in the leukemic niche." <i>EMBO Rep</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31208969 31208969]; doi: [https://dx.doi.org/10.15252/embr.201847546 10.15252/embr.201847546]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31208969 26]. | ||
+ | #Panhale A, Richter FM, Ramírez F, Shvedunova M, Manke T, Mittler G, Akhtar A, (2019) "CAPRI enables comparison of evolutionarily conserved RNA interacting regions." <i>Nat Commun</i> <b>10</b>(1):2682; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31213602 31213602]; doi: [https://dx.doi.org/10.1038/s41467-019-10585-3 10.1038/s41467-019-10585-3]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31213602 175]. | ||
+ | #Schoor C, Brocke-Ahmadinejad N, Gieselmann V, Winter D, (2019) "Investigation of Oligodendrocyte Precursor Cell Differentiation by Quantitative Proteomics." <i>Proteomics</i> <b></b>:e1900057; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31216117 31216117]; doi: [https://dx.doi.org/10.1002/pmic.201900057 10.1002/pmic.201900057]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31216117 5]. | ||
+ | #Alriquet M, Martínez-Limón A, Hanspach G, Hengesbach M, Tartaglia GG, Calloni G, Vabulas RM, (2019) "Assembly of Proteins by Free RNA during the Early Phase of Proteostasis Stress." <i>J Proteome Res</i> <b>18</b>(7):2835–2847; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31244213 31244213]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00143 10.1021/acs.jproteome.9b00143]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31244213 12]. | ||
+ | #Drabovich AP, Saraon P, Drabovich M, Karakosta T, Dimitromanolakis A, Hyndman ME, Jarvi K, Diamandis EP, (2019) "Multi-omics biomarker pipeline reveals elevated levels of protein-glutamine gamma-glutamyltransferase 4 in seminal plasma of prostate cancer patients." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31249104 31249104]; doi: [https://dx.doi.org/10.1074/mcp.RA119.001612 10.1074/mcp.RA119.001612]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31249104 10]. | ||
+ | #Lignitto L, LeBoeuf SE, Homer H, Jiang S, Askenazi M, Karakousi TR, Pass HI, Bhutkar AJ, Tsirigos A, Ueberheide B, Sayin VI, Papagiannakopoulos T, Pagano M, (2019) "Nrf2 Activation Promotes Lung Cancer Metastasis by Inhibiting the Degradation of Bach1." <i>Cell</i> <b>178</b>(2):316–329.e18; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31257023 31257023]; doi: [https://dx.doi.org/10.1016/j.cell.2019.06.003 10.1016/j.cell.2019.06.003]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31257023 1]. | ||
+ | #Holthenrich A, Drexler HCA, Chehab T, Naß J, Gerke V, (2019) "Proximity proteomics of endothelial Weibel-Palade bodies identifies novel regulator of von-Willebrand factor secretion." <i>Blood</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31262780 31262780]; doi: [https://dx.doi.org/10.1182/blood.2019000786 10.1182/blood.2019000786]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31262780 12]. | ||
+ | #Pierre N, Salée C, Massot C, Blétard N, Mazzucchelli G, Smargiasso N, Morsa D, Baiwir D, De Pauw E, Reenaers C, Van Kemseke C, Loly JP, Delvenne P, Meuwis MA, Louis E, (2019) "Proteomics highlights common and distinct pathophysiological processes associated to ileal and colonic ulcers in Crohn's disease." <i>J Crohns Colitis</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31282946 31282946]; doi: [https://dx.doi.org/10.1093/ecco-jcc/jjz130 10.1093/ecco-jcc/jjz130]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31282946 96]. | ||
+ | #Narayan R, Olsson N, Wagar LE, Medeiros BC, Meyer E, Czerwinski D, Khodadoust MS, Zhang L, Schultz L, Davis MM, Elias JE, Levy R, (2019) "Acute myeloid leukemia immunopeptidome reveals HLA presentation of mutated nucleophosmin." <i>PLoS One</i> <b>14</b>(7):e0219547; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31291378 31291378]; doi: [https://dx.doi.org/10.1371/journal.pone.0219547 10.1371/journal.pone.0219547]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31291378 86]. | ||
+ | #Gomig THB, Cavalli IJ, Souza RLR, Lucena ACR, Batista M, Machado KC, Marchini FK, Marchi FA, Lima RS, Urban CA, Cavalli LR, Ribeiro EMSF, (2019) "High-throughput mass spectrometry and bioinformatics analysis of breast cancer proteomic data." <i>Data Brief</i> <b>25</b>:104125; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31294064 31294064]; doi: [https://dx.doi.org/10.1016/j.dib.2019.104125 10.1016/j.dib.2019.104125]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31294064 69]. | ||
+ | #McDermott BT, Peffers MJ, McDonagh B, Tew SR, (2019) "Translational regulation contributes to the secretory response of chondrocytic cells following exposure to interleukin-1β." <i>J Biol Chem</i> <b>294</b>(35):13027–13039; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31300557 31300557]; doi: [https://dx.doi.org/10.1074/jbc.RA118.006865 10.1074/jbc.RA118.006865]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31300557 12]. | ||
+ | #Christakopoulos C, Cehofski LJ, Christensen SR, Vorum H, Honoré B, (2019) "Proteomics reveals a set of highly enriched proteins in epiretinal membrane compared with inner limiting membrane." <i>Exp Eye Res</i> <b>186</b>:107722; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31302158 31302158]; doi: [https://dx.doi.org/10.1016/j.exer.2019.107722 10.1016/j.exer.2019.107722]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31302158 142]. | ||
+ | #Hsu CW, Chang KP, Huang Y, Liu HP, Hsueh PC, Gu PW, Yen WC, Wu CC, (2019) "Proteomic profiling of paired interstitial fluids reveals dysregulated pathways and salivary NID1 as a biomarker of oral cavity squamous cell carcinoma." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31315917 31315917]; doi: [https://dx.doi.org/10.1074/mcp.RA119.001654 10.1074/mcp.RA119.001654]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31315917 975]. | ||
+ | #Kang T, Boland BB, Alarcon C, Grimsby JS, Rhodes CJ, Larsen MR, (2019) "Proteomic Analysis of Restored Insulin Production and Trafficking in Obese Diabetic Mouse Pancreatic Islets Following Euglycemia." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31317746 31317746]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00160 10.1021/acs.jproteome.9b00160]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31317746 66]. | ||
+ | #Patil S, Rajagopalan P, Patel K, Subbannayya T, Babu N, Mohan SV, Advani J, Sathe G, Bhandi S, Solanki HS, Sidransky D, Chatterjee A, Gowda H, Ferrari M, (2019) "Chronic shisha exposure alters phosphoproteome of oral keratinocytes." <i>J Cell Commun Signal</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31321732 31321732]; doi: [https://dx.doi.org/10.1007/s12079-019-00528-4 10.1007/s12079-019-00528-4]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31321732 6]. | ||
+ | #Buser DP, Ritz MF, Moes S, Tostado C, Frank S, Spiess M, Mariani L, Jenö P, Boulay JL, Hutter G, (2019) "Quantitative proteomics reveals reduction of endocytic machinery components in gliomas." <i>EBioMedicine</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31331834 31331834]; doi: [https://dx.doi.org/10.1016/j.ebiom.2019.07.039 10.1016/j.ebiom.2019.07.039]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31331834 51]. | ||
+ | #Hollin T, De Witte C, Fréville A, Guerrera IC, Chhuon C, Saliou JM, Herbert F, Pierrot C, Khalife J, (2019) "Essential role of GEXP15, a specific Protein Phosphatase type 1 partner, in Plasmodium berghei in asexual erythrocytic proliferation and transmission." <i>PLoS Pathog</i> <b>15</b>(7):e1007973; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31348803 31348803]; doi: [https://dx.doi.org/10.1371/journal.ppat.1007973 10.1371/journal.ppat.1007973]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31348803 58]. | ||
+ | #Hillier C, Pardo M, Yu L, Bushell E, Sanderson T, Metcalf T, Herd C, Anar B, Rayner JC, Billker O, Choudhary JS, (2019) "Landscape of the Plasmodium Interactome Reveals Both Conserved and Species-Specific Functionality." <i>Cell Rep</i> <b>28</b>(6):1635–1647.e5; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31390575 31390575]; doi: [https://dx.doi.org/10.1016/j.celrep.2019.07.019 10.1016/j.celrep.2019.07.019]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31390575 723]. | ||
+ | #Stewart PA, Welsh EA, Slebos RJC, Fang B, Izumi V, Chambers M, Zhang G, Cen L, Pettersson F, Zhang Y, Chen Z, Cheng CH, Thapa R, Thompson Z, Fellows KM, Francis JM, Saller JJ, Mesa T, Zhang C, Yoder S, DeNicola GM, Beg AA, Boyle TA, Teer JK, Ann Chen Y, Koomen JM, Eschrich SA, Haura EB, (2019) "Proteogenomic landscape of squamous cell lung cancer." <i>Nat Commun</i> <b>10</b>(1):3578; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31395880 31395880]; doi: [https://dx.doi.org/10.1038/s41467-019-11452-x 10.1038/s41467-019-11452-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31395880 58]. | ||
+ | #Olson MG, Widner RE, Jorgenson LM, Lawrence A, Lagundzin D, Woods NT, Ouellette SP, Rucks EA, (2019) "Proximity Labeling To Map Host-Pathogen Interactions at the Membrane of a Bacterium-Containing Vacuole in Chlamydia trachomatis-Infected Human Cells." <i>Infect Immun</i> <b>87</b>(11):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31405957 31405957]; doi: [https://dx.doi.org/10.1128/IAI.00537-19 10.1128/IAI.00537-19]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31405957 314]. | ||
+ | #Brophy RH, Cai L, Duan X, Zhang Q, Townsend RR, Nunley RM, Guilak F, Rai MF, (2019) "Proteomic analysis of synovial fluid identifies periostin as a biomarker for anterior cruciate ligament injury." <i>Osteoarthritis Cartilage</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31430535 31430535]; doi: [https://dx.doi.org/10.1016/j.joca.2019.08.002 10.1016/j.joca.2019.08.002]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31430535 11]. | ||
+ | #Ong JWJ, Tan KS, Ler SG, Gunaratne J, Choi H, Seet JE, Chow VT, (2019) "Insights into Early Recovery from Influenza Pneumonia by Spatial and Temporal Quantification of Putative Lung Regenerating Cells and by Lung Proteomics." <i>Cells</i> <b>8</b>(9):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31455003 31455003]; doi: [https://dx.doi.org/10.3390/cells8090975 10.3390/cells8090975]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31455003 1]. | ||
+ | #Denes BJ, Bolton C, Illsley CS, Kok WL, Walker JV, Poetsch A, Tredwin C, Kiliaridis S, Hu B, (2019) "Notch Coordinates Periodontal Ligament Maturation through Regulating Lamin A." <i>J Dent Res</i> <b></b>:22034519871448; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31461625 31461625]; doi: [https://dx.doi.org/10.1177/0022034519871448 10.1177/0022034519871448]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31461625 1]. | ||
+ | #Schulte F, Hasturk H, Hardt M, (2019) "Mapping Relative Differences in Human Salivary Gland Secretions by Dried Saliva Spot Sampling and nanoLC-MS/MS." <i>Proteomics</i> <b></b>:e1900023; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31476108 31476108]; doi: [https://dx.doi.org/10.1002/pmic.201900023 10.1002/pmic.201900023]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31476108 36]. | ||
+ | #Defenouillère Q, Verraes A, Laussel C, Friedrich A, Schacherer J, Léon S, (2019) "The induction of HAD-like phosphatases by multiple signaling pathways confers resistance to the metabolic inhibitor 2-deoxyglucose." <i>Sci Signal</i> <b>12</b>(597):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31481524 31481524]; doi: [https://dx.doi.org/10.1126/scisignal.aaw8000 10.1126/scisignal.aaw8000]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31481524 6]. | ||
+ | #Gao Y, Lee H, Kwon OK, Tan M, Kim KT, Lee S, (2019) "Global Proteomic Analysis of Lysine Succinylation in Zebrafish (<i>Danio rerio</i>)." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31483678 31483678]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00462 10.1021/acs.jproteome.9b00462]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31483678 4]. | ||
+ | #Al Ahmad A, Paffrath V, Clima R, Busch JF, Rabien A, Kilic E, Villegas S, Timmermann B, Attimonelli M, Jung K, Meierhofer D, (2019) "Papillary Renal Cell Carcinomas Rewire Glutathione Metabolism and Are Deficient in Both Anabolic Glucose Synthesis and Oxidative Phosphorylation." <i>Cancers (Basel)</i> <b>11</b>(9):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31484429 31484429]; doi: [https://dx.doi.org/10.3390/cancers11091298 10.3390/cancers11091298]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31484429 33]. | ||
+ | #Liebelt F, Jansen NS, Kumar S, Gracheva E, Claessens LA, Verlaan-de Vries M, Willemstein E, Vertegaal ACO, (2019) "The poly-SUMO2/3 protease SENP6 enables assembly of the constitutive centromere-associated network by group deSUMOylation." <i>Nat Commun</i> <b>10</b>(1):3987; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31485003 31485003]; doi: [https://dx.doi.org/10.1038/s41467-019-11773-x 10.1038/s41467-019-11773-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31485003 46]. | ||
+ | #Sleat DE, Wiseman JA, El-Banna M, Zheng H, Zhao C, Soherwardy A, Moore DF, Lobel P, (2019) "Analysis of brain and cerebrospinal fluid from mouse models of the three major forms of neuronal ceroid lipofuscinosis reveals changes in the lysosomal proteome." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31501224 31501224]; doi: [https://dx.doi.org/10.1074/mcp.RA119.001587 10.1074/mcp.RA119.001587]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31501224 132]. | ||
+ | #Wilson R, Gundamaraju R, Vemuri R, Angelucci C, Geraghty D, Gueven N, Eri RD, (2019) "Identification of Key Pro-Survival Proteins in Isolated Colonic Goblet Cells of Winnie, a Murine Model of Spontaneous Colitis." <i>Inflamm Bowel Dis</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31504521 31504521]; doi: [https://dx.doi.org/10.1093/ibd/izz179 10.1093/ibd/izz179]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31504521 6]. | ||
+ | #Piano D, Cocco E, Guadalupi G, Kalaji HM, Kirkpatrick J, Farci D, (2019) "Characterization under quasi-native conditions of the capsanthin/capsorubin synthase from Capsicum annuum L." <i>Plant Physiol Biochem</i> <b>143</b>:165–175; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31505449 31505449]; doi: [https://dx.doi.org/10.1016/j.plaphy.2019.09.007 10.1016/j.plaphy.2019.09.007]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31505449 4]. | ||
+ | #Dou M, Clair G, Tsai CF, Xu K, Chrisler WB, Sontag RL, Zhao R, Moore RJ, Liu T, Pasa-Tolic L, Smith RD, Shi T, Adkins JN, Qian WJ, Kelly RT, Ansong C, Zhu Y, (2019) "High-Throughput Single Cell Proteomics Enabled by Multiplex Isobaric Labeling in a Nanodroplet Sample Preparation Platform." <i>Anal Chem</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31509397 31509397]; doi: [https://dx.doi.org/10.1021/acs.analchem.9b03349 10.1021/acs.analchem.9b03349]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31509397 20]. | ||
+ | #Lugli F, Di Rocco G, Vazzana A, Genovese F, Pinetti D, Cilli E, Carile MC, Silvestrini S, Gabanini G, Arrighi S, Buti L, Bortolini E, Cipriani A, Figus C, Marciani G, Oxilia G, Romandini M, Sorrentino R, Sola M, Benazzi S, (2019) "Enamel peptides reveal the sex of the Late Antique 'Lovers of Modena'." <i>Sci Rep</i> <b>9</b>(1):13130; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31511583 31511583]; doi: [https://dx.doi.org/10.1038/s41598-019-49562-7 10.1038/s41598-019-49562-7]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31511583 16]. | ||
+ | #Gnanasundram SV, Kos-Braun IC, Koš M, (2019) "At least two molecules of the RNA helicase Has1 are simultaneously present in pre-ribosomes during ribosome biogenesis." <i>Nucleic Acids Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31511893 31511893]; doi: [https://dx.doi.org/10.1093/nar/gkz767 10.1093/nar/gkz767]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31511893 17]. | ||
+ | #Kampstra ASB, van Heemst J, Janssen GM, de Ru AH, van Lummel M, van Veelen PA, Toes REM, (2019) "Ligandomes obtained from different HLA-class II-molecules are homologous for N- and C-terminal residues outside the peptide-binding cleft." <i>Immunogenetics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31520135 31520135]; doi: [https://dx.doi.org/10.1007/s00251-019-01129-6 10.1007/s00251-019-01129-6]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31520135 77]. | ||
+ | #Sjödin S, Brinkmalm G, Öhrfelt A, Parnetti L, Paciotti S, Hansson O, Hardy J, Blennow K, Zetterberg H, Brinkmalm A, (2019) "Endo-lysosomal proteins and ubiquitin CSF concentrations in Alzheimer's and Parkinson's disease." <i>Alzheimers Res Ther</i> <b>11</b>(1):82; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31521194 31521194]; doi: [https://dx.doi.org/10.1186/s13195-019-0533-9 10.1186/s13195-019-0533-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31521194 27]. | ||
+ | #Israel S, Ernst M, Psathaki OE, Drexler HCA, Casser E, Suzuki Y, Makalowski W, Boiani M, Fuellen G, Taher L, (2019) "An integrated genome-wide multi-omics analysis of gene expression dynamics in the preimplantation mouse embryo." <i>Sci Rep</i> <b>9</b>(1):13356; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31527703 31527703]; doi: [https://dx.doi.org/10.1038/s41598-019-49817-3 10.1038/s41598-019-49817-3]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31527703 21]. | ||
+ | #Moutaoufik MT, Malty R, Amin S, Zhang Q, Phanse S, Gagarinova A, Zilocchi M, Hoell L, Minic Z, Gagarinova M, Aoki H, Stockwell J, Jessulat M, Goebels F, Broderick K, Scott NE, Vlasblom J, Musso G, Prasad B, Lamantea E, Garavaglia B, Rajput A, Murayama K, Okazaki Y, Foster LJ, Bader GD, Cayabyab FS, Babu M, (2019) "Rewiring of the Human Mitochondrial Interactome during Neuronal Reprogramming Reveals Regulators of the Respirasome and Neurogenesis." <i>iScience</i> <b>19</b>:1114–1132; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31536960 31536960]; doi: [https://dx.doi.org/10.1016/j.isci.2019.08.057 10.1016/j.isci.2019.08.057]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31536960 708]. | ||
+ | #Lim MY, Paulo JA, Gygi SP, (2019) "Evaluating False Transfer Rates from the Match-between-Runs Algorithm with a Two-Proteome Model." <i>J Proteome Res</i> <b>18</b>(11):4020–4026; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31547658 31547658]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00492 10.1021/acs.jproteome.9b00492]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31547658 40]. | ||
+ | #Uckeley ZM, Moeller R, Kühn LI, Nilsson E, Robens C, Lasswitz L, Lindqvist R, Lenman A, Passos V, Voss Y, Sommerauer C, Kampmann M, Goffinet C, Meissner F, Överby AK, Lozach PY, Gerold G, (2019) "Quantitative proteomics of Uukuniemi virus - host cell interactions reveals GBF1 as proviral host factor for phleboviruses." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31570497 31570497]; doi: [https://dx.doi.org/10.1074/mcp.RA119.001631 10.1074/mcp.RA119.001631]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31570497 20]. | ||
+ | #Kawahara R, Recuero S, Nogueira FCS, Domont GB, Leite KRM, Srougi M, Thaysen-Andersen M, Palmisano G, (2019) "Tissue Proteome Signatures Associated with Five Grades of Prostate Cancer and Benign Prostatic Hyperplasia." <i>Proteomics</i> <b></b>:e1900174; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31576646 31576646]; doi: [https://dx.doi.org/10.1002/pmic.201900174 10.1002/pmic.201900174]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31576646 5]. | ||
+ | #Baers LL, Breckels LM, Mills LA, Gatto L, Deery M, Stevens TJ, Howe CJ, Lilley KS, Lea-Smith DJ, (2019) "Proteome mapping of a cyanobacterium reveals distinct compartment organisation and cell-dispersed metabolism." <i>Plant Physiol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31578229 31578229]; doi: [https://dx.doi.org/10.1104/pp.19.00897 10.1104/pp.19.00897]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31578229 39]. | ||
+ | #Velásquez E, Martins de Souza D, Velásquez I, Carneiro GRA, Schmitt A, Falkai P, Domont GB, Nogueira FCS, (2019) "QUANTITATIVE SUBCELLULAR PROTEOMICS OF THE ORBITOFRONTAL CORTEX OF SCHIZOPHRENIA PATIENTS." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31581776 31581776]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00398 10.1021/acs.jproteome.9b00398]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31581776 46]. | ||
+ | #Lundby A, Franciosa G, Emdal KB, Refsgaard JC, Gnosa SP, Bekker-Jensen DB, Secher A, Maurya SR, Paul I, Mendez BL, Kelstrup CD, Francavilla C, Kveiborg M, Montoya G, Jensen LJ, Olsen JV, (2019) "Oncogenic Mutations Rewire Signaling Pathways by Switching Protein Recruitment to Phosphotyrosine Sites." <i>Cell</i> <b>179</b>(2):543–560.e26; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31585087 31585087]; doi: [https://dx.doi.org/10.1016/j.cell.2019.09.008 10.1016/j.cell.2019.09.008]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31585087 255]. | ||
+ | #Bichmann L, Nelde A, Ghosh M, Heumos L, Mohr C, Peltzer A, Kuchenbecker L, Sachsenberg T, Walz JS, Stevanović S, Rammensee HG, Kohlbacher O, (2019) "MHCquant: Automated and reproducible data analysis for immunopeptidomics." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31589052 31589052]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00313 10.1021/acs.jproteome.9b00313]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31589052 38]. | ||
+ | #Lin Z, Zhang Y, Pan H, Hao P, Li S, He Y, Yang H, Liu S, Ren Y, (2019) "An alternative strategy to explore missing proteins with low molecular weight." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31592669 31592669]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00353 10.1021/acs.jproteome.9b00353]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31592669 3]. | ||
+ | #Noya SB, Colameo D, Brüning F, Spinnler A, Mircsof D, Opitz L, Mann M, Tyagarajan SK, Robles MS, Brown SA, (2019) "The forebrain synaptic transcriptome is organized by clocks but its proteome is driven by sleep." <i>Science</i> <b>366</b>(6462):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31601739 31601739]; doi: [https://dx.doi.org/10.1126/science.aav2642 10.1126/science.aav2642]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31601739 96]. | ||
+ | #Radzisheuskaya A, Shliaha PV, Grinev V, Lorenzini E, Kovalchuk S, Shlyueva D, Gorshkov V, Hendrickson RC, Jensen ON, Helin K, (2019) "PRMT5 methylome profiling uncovers a direct link to splicing regulation in acute myeloid leukemia." <i>Nat Struct Mol Biol</i> <b>26</b>(11):999–1012; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31611688 31611688]; doi: [https://dx.doi.org/10.1038/s41594-019-0313-z 10.1038/s41594-019-0313-z]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31611688 148]. | ||
+ | #Racle J, Michaux J, Rockinger GA, Arnaud M, Bobisse S, Chong C, Guillaume P, Coukos G, Harari A, Jandus C, Bassani-Sternberg M, Gfeller D, (2019) "Robust prediction of HLA class II epitopes by deep motif deconvolution of immunopeptidomes." <i>Nat Biotechnol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31611696 31611696]; doi: [https://dx.doi.org/10.1038/s41587-019-0289-6 10.1038/s41587-019-0289-6]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31611696 131]. | ||
+ | #Stadlmann J, Hudecz O, Krššáková G, Ctortecka C, Van Raemdonck G, Op De Beeck J, Desmet G, Penninger JM, Jacobs P, Mechtler K, (2019) "Improved Sensitivity in Low-Input Proteomics using Micro-Pillar Array-based Chromatography." <i>Anal Chem</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31612716 31612716]; doi: [https://dx.doi.org/10.1021/acs.analchem.9b02899 10.1021/acs.analchem.9b02899]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31612716 68]. | ||
+ | #McRae EKS, Dupas SJ, Booy EP, Piragasam RS, Fahlman RP, McKenna SA, (2019) "An RNA guanine quadruplex regulated pathway to TRAIL-sensitization by DDX21." <i>RNA</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31653714 31653714]; doi: [https://dx.doi.org/10.1261/rna.072199.119 10.1261/rna.072199.119]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31653714 108]. | ||
+ | #Kenny A, Jiménez-Mateos EM, Zea-Sevilla MA, Rábano A, Gili-Manzanaro P, Prehn JHM, Henshall DC, Ávila J, Engel T, Hernández F, (2019) "Proteins and microRNAs are differentially expressed in tear fluid from patients with Alzheimer's disease." <i>Sci Rep</i> <b>9</b>(1):15437; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31659197 31659197]; doi: [https://dx.doi.org/10.1038/s41598-019-51837-y 10.1038/s41598-019-51837-y]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31659197 32]. | ||
+ | #Arima N, Sasaki Y, Lee LH, Zhang H, Figueiredo JL, Mlynarchik AK, Qiao J, Yamada I, Higashi H, Ha AH, Halu A, Mizuno K, Singh SA, Yamazaki Y, Aikawa M, (2020) "Multiorgan Systems Study Reveals Igfbp7 as a Suppressor of Gluconeogenesis after Gastric Bypass Surgery." <i>J Proteome Res</i> <b>19</b>(1):129–143; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31661273 31661273]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00441 10.1021/acs.jproteome.9b00441]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31661273 4]. | ||
+ | #Mallam AL, Sae-Lee W, Schaub JM, Tu F, Battenhouse A, Jang YJ, Kim J, Wallingford JB, Finkelstein IJ, Marcotte EM, Drew K, (2019) "Systematic Discovery of Endogenous Human Ribonucleoprotein Complexes." <i>Cell Rep</i> <b>29</b>(5):1351–1368.e5; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31665645 31665645]; doi: [https://dx.doi.org/10.1016/j.celrep.2019.09.060 10.1016/j.celrep.2019.09.060]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31665645 122]. | ||
+ | #Alvarez Hayes J, Surmann K, Lamberti Y, Depke M, Dhople V, Blancá B, Ruiz E, Vecerek B, Schmidt F, Völker U, Rodriguez ME, (2020) "Hfq modulates global protein pattern and stress response in Bordetella pertussis." <i>J Proteomics</i> <b>211</b>:103559; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31669358 31669358]; doi: [https://dx.doi.org/10.1016/j.jprot.2019.103559 10.1016/j.jprot.2019.103559]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31669358 16]. | ||
+ | #Sohier P, Sanson R, Leduc M, Audebourg A, Broussard C, Salnot V, Just PA, Pasmant E, Mayeux P, Guillonneau F, Romagnolo B, Perret C, Terris B, (2019) "Proteome analysis of formalin-fixed paraffin-embedded colorectal adenomas reveals the heterogeneous nature of traditional serrated adenomas compared to other colorectal adenomas." <i>J Pathol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31729028 31729028]; doi: [https://dx.doi.org/10.1002/path.5366 10.1002/path.5366]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31729028 61]. | ||
+ | #Newey A, Griffiths B, Michaux J, Pak HS, Stevenson BJ, Woolston A, Semiannikova M, Spain G, Barber LJ, Matthews N, Rao S, Watkins D, Chau I, Coukos G, Racle J, Gfeller D, Starling N, Cunningham D, Bassani-Sternberg M, Gerlinger M, (2019) "Immunopeptidomics of colorectal cancer organoids reveals a sparse HLA class I neoantigen landscape and no increase in neoantigens with interferon or MEK-inhibitor treatment." <i>J Immunother Cancer</i> <b>7</b>(1):309; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31735170 31735170]; doi: [https://dx.doi.org/10.1186/s40425-019-0769-8 10.1186/s40425-019-0769-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31735170 193]. | ||
+ | #Thompson A, Wölmer N, Koncarevic S, Selzer S, Böhm G, Legner H, Schmid P, Kienle S, Penning P, Höhle C, Berfelde A, Martinez-Pinna R, Farztdinov V, Jung S, Kuhn K, Pike I, (2019) "TMTpro: Design, Synthesis, and Initial Evaluation of a Proline-Based Isobaric 16-Plex Tandem Mass Tag Reagent Set." <i>Anal Chem</i> <b>91</b>(24):15941–15950; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31738517 31738517]; doi: [https://dx.doi.org/10.1021/acs.analchem.9b04474 10.1021/acs.analchem.9b04474]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31738517 20]. | ||
+ | #Kim JJ, Lee SY, Gong F, Battenhouse AM, Boutz DR, Bashyal A, Refvik ST, Chiang CM, Xhemalce B, Paull TT, Brodbelt JS, Marcotte EM, Miller KM, (2019) "Systematic bromodomain protein screens identify homologous recombination and R-loop suppression pathways involved in genome integrity." <i>Genes Dev</i> <b>33</b>(23-24):1751–1774; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31753913 31753913]; doi: [https://dx.doi.org/10.1101/gad.331231.119 10.1101/gad.331231.119]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31753913 66]. | ||
+ | #Fang EF, Hou Y, Lautrup S, Jensen MB, Yang B, SenGupta T, Caponio D, Khezri R, Demarest TG, Aman Y, Figueroa D, Morevati M, Lee HJ, Kato H, Kassahun H, Lee JH, Filippelli D, Okur MN, Mangerich A, Croteau DL, Maezawa Y, Lyssiotis CA, Tao J, Yokote K, Rusten TE, Mattson MP, Jasper H, Nilsen H, Bohr VA, (2019) "NAD<sup>+</sup> augmentation restores mitophagy and limits accelerated aging in Werner syndrome." <i>Nat Commun</i> <b>10</b>(1):5284; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31754102 31754102]; doi: [https://dx.doi.org/10.1038/s41467-019-13172-8 10.1038/s41467-019-13172-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31754102 32]. | ||
+ | #Zhang Y, Lin Z, Tan Y, Bu F, Hao P, Zhang K, Yang H, Liu S, Ren Y, (2019) "Exploration of Missing Proteins by a Combination Approach to Enrich the Low-Abundance Hydrophobic Proteins from Four Cancer Cell Lines." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31773964 31773964]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00590 10.1021/acs.jproteome.9b00590]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31773964 16]. | ||
+ | #Löffler MW, Nussbaum B, Jäger G, Jurmeister PS, Budczies J, Pereira PL, Clasen S, Kowalewski DJ, Mühlenbruch L, Königsrainer I, Beckert S, Ladurner R, Wagner S, Bullinger F, Gross TH, Schroeder C, Sipos B, Königsrainer A, Stevanović S, Denkert C, Rammensee HG, Gouttefangeas C, Haen SP, (2019) "A Non-interventional Clinical Trial Assessing Immune Responses After Radiofrequency Ablation of Liver Metastases From Colorectal Cancer." <i>Front Immunol</i> <b>10</b>:2526; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31803175 31803175]; doi: [https://dx.doi.org/10.3389/fimmu.2019.02526 10.3389/fimmu.2019.02526]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31803175 76]. | ||
+ | #Szibor M, Gainutdinov T, Fernandez-Vizarra E, Dufour E, Gizatullina Z, Debska-Vielhaber G, Heidler J, Wittig I, Viscomi C, Gellerich F, Moore AL, (2020) "Bioenergetic consequences from xenotopic expression of a tunicate AOX in mouse mitochondria: Switch from RET and ROS to FET." <i>Biochim Biophys Acta Bioenerg</i> <b>1861</b>(2):148137; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31825809 31825809]; doi: [https://dx.doi.org/10.1016/j.bbabio.2019.148137 10.1016/j.bbabio.2019.148137]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31825809 96]. | ||
+ | #Solleder M, Guillaume P, Racle J, Michaux J, Pak HS, Müller M, Coukos G, Bassani-Sternberg M, Gfeller D, (2019) "Mass spectrometry based immunopeptidomics leads to robust predictions of phosphorylated HLA class I ligands." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31848261 31848261]; doi: [https://dx.doi.org/10.1074/mcp.TIR119.001641 10.1074/mcp.TIR119.001641]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31848261 208]. | ||
+ | #Nobre LV, Nightingale K, Ravenhill BJ, Antrobus R, Soday L, Nichols J, Davies JA, Seirafian S, Wang EC, Davison AJ, Wilkinson GW, Stanton RJ, Huttlin EL, Weekes MP, (2019) "Human cytomegalovirus interactome analysis identifies degradation hubs, domain associations and viral protein functions." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31873071 31873071]; doi: [https://dx.doi.org/10.7554/eLife.49894 10.7554/eLife.49894]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31873071 354]. | ||
+ | #Mühlhofer M, Berchtold E, Stratil CG, Csaba G, Kunold E, Bach NC, Sieber SA, Haslbeck M, Zimmer R, Buchner J, (2019) "The Heat Shock Response in Yeast Maintains Protein Homeostasis by Chaperoning and Replenishing Proteins." <i>Cell Rep</i> <b>29</b>(13):4593–4607.e8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31875563 31875563]; doi: [https://dx.doi.org/10.1016/j.celrep.2019.11.109 10.1016/j.celrep.2019.11.109]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31875563 15]. | ||
+ | #Matas-Nadal C, Bech-Serra JJ, Guasch-Vallés M, Fernández-Armenteros JM, Barceló C, Casanova JM, de la Torre Gómez C, Aguayo Ortiz R, Garí E, (2020) "Evaluation of Tumor Interstitial Fluid-Extraction Methods for Proteome Analysis: Comparison of Biopsy Elution versus Centrifugation." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31877049 31877049]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00770 10.1021/acs.jproteome.9b00770]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31877049 10]. | ||
+ | #Van JAD, Clotet-Freixas S, Zhou J, Batruch I, Sun C, Glogauer M, Rampoldi L, Elia Y, Mahmud F, Sochett E, Diamandis EP, Scholey J, Konvalinka A, (2019) "Peptidomic analysis of urine from youths with early type 1 diabetes reveals novel bioactivity of uromodulin peptides <i>in vitro</i>." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31879271 31879271]; doi: [https://dx.doi.org/10.1074/mcp.RA119.001858 10.1074/mcp.RA119.001858]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31879271 90]. | ||
+ | #Nguyen AM, Zhou J, Sicairos B, Sonney S, Du Y, (2019) "Upregulation of CD73 Confers Acquired Radioresistance and is Required for Maintaining Irradiation-Selected Pancreatic Cancer Cells in a Mesenchymal State." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31879272 31879272]; doi: [https://dx.doi.org/10.1074/mcp.RA119.001779 10.1074/mcp.RA119.001779]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31879272 20]. | ||
+ | #Mugahid DA, Sengul TG, You X, Wang Y, Steil L, Bergmann N, Radke MH, Ofenbauer A, Gesell-Salazar M, Balogh A, Kempa S, Tursun B, Robbins CT, Völker U, Chen W, Nelson L, Gotthardt M, (2019) "Proteomic and Transcriptomic Changes in Hibernating Grizzly Bears Reveal Metabolic and Signaling Pathways that Protect against Muscle Atrophy." <i>Sci Rep</i> <b>9</b>(1):19976; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31882638 31882638]; doi: [https://dx.doi.org/10.1038/s41598-019-56007-8 10.1038/s41598-019-56007-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31882638 16]. | ||
+ | #Rispoli LA, Edwards JL, Pohler KG, Russell S, Somiari RI, Payton RR, Schrick FN, (2019) "Heat-induced hyperthermia impacts the follicular fluid proteome of the periovulatory follicle in lactating dairy cows." <i>PLoS One</i> <b>14</b>(12):e0227095; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31887207 31887207]; doi: [https://dx.doi.org/10.1371/journal.pone.0227095 10.1371/journal.pone.0227095]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31887207 5]. | ||
+ | #Róka B, Tod P, Kaucsár T, Vizovišek M, Vidmar R, Turk B, Fonović M, Szénási G, Hamar P, (2019) "The Acute Phase Response Is a Prominent Renal Proteome Change in Sepsis in Mice." <i>Int J Mol Sci</i> <b>21</b>(1):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31892161 31892161]; doi: [https://dx.doi.org/10.3390/ijms21010200 10.3390/ijms21010200]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31892161 120]. | ||
+ | #Isobe K, Raghuram V, Krishnan L, Chou CL, Yang CR, Knepper MA, (2020) "CRISPR-Cas9/phosphoproteomics identifies multiple noncanonical targets of myosin light chain kinase." <i>Am J Physiol Renal Physiol</i> <b>318</b>(3):F600–F616; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31904282 31904282]; doi: [https://dx.doi.org/10.1152/ajprenal.00431.2019 10.1152/ajprenal.00431.2019]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31904282 75]. | ||
+ | #Hose J, Escalante LE, Clowers KJ, Dutcher HA, Robinson D, Bouriakov V, Coon JJ, Shishkova E, Gasch AP, (2020) "The genetic basis of aneuploidy tolerance in wild yeast." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31909711 31909711]; doi: [https://dx.doi.org/10.7554/eLife.52063 10.7554/eLife.52063]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31909711 24]. | ||
+ | #Bian Y, Zheng R, Bayer FP, Wong C, Chang YC, Meng C, Zolg DP, Reinecke M, Zecha J, Wiechmann S, Heinzlmeir S, Scherr J, Hemmer B, Baynham M, Gingras AC, Boychenko O, Kuster B, (2020) "Robust, reproducible and quantitative analysis of thousands of proteomes by micro-flow LC-MS/MS." <i>Nat Commun</i> <b>11</b>(1):157; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31919466 31919466]; doi: [https://dx.doi.org/10.1038/s41467-019-13973-x 10.1038/s41467-019-13973-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31919466 2175]. | ||
+ | #Bai B, Wang X, Li Y, Chen PC, Yu K, Dey KK, Yarbro JM, Han X, Lutz BM, Rao S, Jiao Y, Sifford JM, Han J, Wang M, Tan H, Shaw TI, Cho JH, Zhou S, Wang H, Niu M, Mancieri A, Messler KA, Sun X, Wu Z, Pagala V, High AA, Bi W, Zhang H, Chi H, Haroutunian V, Zhang B, Beach TG, Yu G, Peng J, (2020) "Deep Multilayer Brain Proteomics Identifies Molecular Networks in Alzheimer's Disease Progression." <i>Neuron</i> <b>105</b>(6):975–991.e7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31926610 31926610]; doi: [https://dx.doi.org/10.1016/j.neuron.2019.12.015 10.1016/j.neuron.2019.12.015]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31926610 158]. | ||
+ | #Hijazi M, Smith R, Rajeeve V, Bessant C, Cutillas PR, (2020) "Reconstructing kinase network topologies from phosphoproteomics data reveals cancer-associated rewiring." <i>Nat Biotechnol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31959955 31959955]; doi: [https://dx.doi.org/10.1038/s41587-019-0391-9 10.1038/s41587-019-0391-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31959955 874]. | ||
+ | #Xu K, Yang L, Zhang L, Qi H, (2020) "Lack of AKAP3 disrupts integrity of the subcellular structure and proteome of mouse sperm and causes male sterility." <i>Development</i> <b>147</b>(2):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31969357 31969357]; doi: [https://dx.doi.org/10.1242/dev.181057 10.1242/dev.181057]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31969357 3]. | ||
+ | #Meng K, Lu S, Yan X, Sun Y, Gao J, Wang Y, Yin X, Sun Z, He QY, (2020) "Quantitative Mitochondrial Proteomics Reveals ANXA7 as a Crucial Factor in Mitophagy." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31975592 31975592]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00800 10.1021/acs.jproteome.9b00800]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31975592 3]. | ||
+ | #Gonnet J, Poncelet L, Meriaux C, Gonçalves E, Weiss L, Tchitchek N, Pedruzzi E, Soria A, Boccara D, Vogt A, Bonduelle O, Hamm G, Ait-Belkacem R, Stauber J, Fournier I, Wisztorski M, Combadiere B, (2020) "Mechanisms of innate events during skin reaction following intradermal injection of seasonal influenza vaccine." <i>J Proteomics</i> <b>216</b>:103670; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31991189 31991189]; doi: [https://dx.doi.org/10.1016/j.jprot.2020.103670 10.1016/j.jprot.2020.103670]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31991189 48]. | ||
+ | #Veyel D, Wenger K, Broermann A, Bretschneider T, Luippold AH, Krawczyk B, Rist W, Simon E, (2020) "Biomarker discovery for chronic liver diseases by multi-omics - a preclinical case study." <i>Sci Rep</i> <b>10</b>(1):1314; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31992752 31992752]; doi: [https://dx.doi.org/10.1038/s41598-020-58030-6 10.1038/s41598-020-58030-6]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31992752 4]. | ||
+ | #Lindberg T, de Ávila RI, Zeller KS, Levander F, Eriksson D, Chawade A, Lindstedt M, (2020) "An integrated transcriptomic- and proteomic-based approach to evaluate the human skin sensitization potential of glyphosate and its commercial agrochemical formulations." <i>J Proteomics</i> <b>217</b>:103647; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32006680 32006680]; doi: [https://dx.doi.org/10.1016/j.jprot.2020.103647 10.1016/j.jprot.2020.103647]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32006680 21]. | ||
+ | #Yasuda S, Tsuchiya H, Kaiho A, Guo Q, Ikeuchi K, Endo A, Arai N, Ohtake F, Murata S, Inada T, Baumeister W, Fernández-Busnadiego R, Tanaka K, Saeki Y, (2020) "Stress- and ubiquitylation-dependent phase separation of the proteasome." <i>Nature</i> <b>578</b>(7794):296–300; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32025036 32025036]; doi: [https://dx.doi.org/10.1038/s41586-020-1982-9 10.1038/s41586-020-1982-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32025036 6]. | ||
+ | #Pini T, Parks J, Russ J, Dzieciatkowska M, Hansen KC, Schoolcraft WB, Katz-Jaffe M, (2020) "Obesity significantly alters the human sperm proteome, with potential implications for fertility." <i>J Assist Reprod Genet</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32026202 32026202]; doi: [https://dx.doi.org/10.1007/s10815-020-01707-8 10.1007/s10815-020-01707-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32026202 20]. | ||
+ | #Storey AJ, Hardman RE, Byrum SD, Mackintosh SG, Edmondson RD, Wahls WP, Tackett AJ, Lewis JA, (2020) "Accurate and Sensitive Quantitation of the Dynamic Heat Shock Proteome Using Tandem Mass Tags." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32027144 32027144]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00704 10.1021/acs.jproteome.9b00704]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32027144 2]. | ||
+ | #Eldridge MJG, Pereira JM, Impens F, Hamon MA, (2020) "Active nuclear import of the deacetylase Sirtuin-2 is controlled by its C-terminus and importins." <i>Sci Rep</i> <b>10</b>(1):2034; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32042025 32042025]; doi: [https://dx.doi.org/10.1038/s41598-020-58397-6 10.1038/s41598-020-58397-6]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32042025 6]. | ||
+ | #Zhao Q, Laverdure JP, Lanoix J, Durette C, Coté C, Bonneil E, Laumont CM, Gendron P, Vincent K, Courcelles M, Lemieux S, Millar DG, Ohashi PS, Thibault P, Perreault C, (2020) "Proteogenomics uncovers a vast repertoire of shared tumor-specific antigens in ovarian cancer." <i>Cancer Immunol Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32047025 32047025]; doi: [https://dx.doi.org/10.1158/2326-6066.CIR-19-0541 10.1158/2326-6066.CIR-19-0541]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32047025 12]. | ||
+ | #Plum T, Wang X, Rettel M, Krijgsveld J, Feyerabend TB, Rodewald HR, (2020) "Human Mast Cell Proteome Reveals Unique Lineage, Putative Functions, and Structural Basis for Cell Ablation." <i>Immunity</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32049054 32049054]; doi: [https://dx.doi.org/10.1016/j.immuni.2020.01.012 10.1016/j.immuni.2020.01.012]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32049054 12]. | ||
+ | #Ray S, Valekunja UK, Stangherlin A, Howell SA, Snijders AP, Damodaran G, Reddy AB, (2020) "Circadian rhythms in the absence of the clock gene <i>Bmal1</i>." <i>Science</i> <b>367</b>(6479):800–806; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32054765 32054765]; doi: [https://dx.doi.org/10.1126/science.aaw7365 10.1126/science.aaw7365]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32054765 40]. | ||
+ | #Saddala MS, Lennikov A, Huang H, (2020) "Placental growth factor regulates the pentose phosphate pathway and antioxidant defense systems in human retinal endothelial cells." <i>J Proteomics</i> <b>217</b>:103682; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32058040 32058040]; doi: [https://dx.doi.org/10.1016/j.jprot.2020.103682 10.1016/j.jprot.2020.103682]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32058040 1]. | ||
+ | #Kosok M, Alli-Shaik A, Bay BH, Gunaratne J, (2020) "Comprehensive Proteomic Characterization Reveals Subclass-Specific Molecular Aberrations within Triple-negative Breast Cancer." <i>iScience</i> <b>23</b>(2):100868; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32058975 32058975]; doi: [https://dx.doi.org/10.1016/j.isci.2020.100868 10.1016/j.isci.2020.100868]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32058975 8]. | ||
+ | #Dou Y, Kawaler EA, Cui Zhou D, Gritsenko MA, Huang C, Blumenberg L, Karpova A, Petyuk VA, Savage SR, Satpathy S, Liu W, Wu Y, Tsai CF, Wen B, Li Z, Cao S, Moon J, Shi Z, Cornwell M, Wyczalkowski MA, Chu RK, Vasaikar S, Zhou H, Gao Q, Moore RJ, Li K, Sethuraman S, Monroe ME, Zhao R, Heiman D, Krug K, Clauser K, Kothadia R, Maruvka Y, Pico AR, Oliphant AE, Hoskins EL, Pugh SL, Beecroft SJI, Adams DW, Jarman JC, Kong A, Chang HY, Reva B, Liao Y, Rykunov D, Colaprico A, Chen XS, Czekański A, Jędryka M, Matkowski R, Wiznerowicz M, Hiltke T, Boja E, Kinsinger CR, Mesri M, Robles AI, Rodriguez H, Mutch D, Fuh K, Ellis MJ, DeLair D, Thiagarajan M, Mani DR, Getz G, Noble M, Nesvizhskii AI, Wang P, Anderson ML, Levine DA, Smith RD, Payne SH, Ruggles KV, Rodland KD, Ding L, Zhang B, Liu T, Fenyö D, Clinical Proteomic Tumor Analysis Consortium., (2020) "Proteogenomic Characterization of Endometrial Carcinoma." <i>Cell</i> <b>180</b>(4):729–748.e26; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32059776 32059776]; doi: [https://dx.doi.org/10.1016/j.cell.2020.01.026 10.1016/j.cell.2020.01.026]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32059776 208]. | ||
+ | #Kalaora S, Lee JS, Barnea E, Levy R, Greenberg P, Alon M, Yagel G, Bar Eli G, Oren R, Peri A, Patkar S, Bitton L, Rosenberg SA, Lotem M, Levin Y, Admon A, Ruppin E, Samuels Y, (2020) "Immunoproteasome expression is associated with better prognosis and response to checkpoint therapies in melanoma." <i>Nat Commun</i> <b>11</b>(1):896; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32060274 32060274]; doi: [https://dx.doi.org/10.1038/s41467-020-14639-9 10.1038/s41467-020-14639-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32060274 30]. | ||
+ | #Kurimchak AM, Herrera-Montávez C, Brown J, Johnson KJ, Sodi V, Srivastava N, Kumar V, Deihimi S, O'Brien S, Peri S, Mantia-Smaldone GM, Jain A, Winters RM, Cai KQ, Chernoff J, Connolly DC, Duncan JS, (2020) "Functional proteomics interrogation of the kinome identifies MRCKA as a therapeutic target in high-grade serous ovarian carcinoma." <i>Sci Signal</i> <b>13</b>(619):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32071169 32071169]; doi: [https://dx.doi.org/10.1126/scisignal.aax8238 10.1126/scisignal.aax8238]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32071169 51]. | ||
+ | #Touzelet O, Broadbent L, Armstrong SD, Aljabr W, Cloutman-Green E, Power UF, Hiscox JA, (2020) "The secretome profiling of a pediatric airway epithelium infected with hRSV identified aberrant apical/basolateral trafficking and novel immune modulating (CXCL6, CXCL16, CSF3) and antiviral (CEACAM1) proteins." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32075873 32075873]; doi: [https://dx.doi.org/10.1074/mcp.RA119.001546 10.1074/mcp.RA119.001546]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32075873 15]. | ||
+ | #Agudelo Garcia PA, Nagarajan P, Parthun MR, (2020) "Hat1-Dependent Lysine Acetylation Targets Diverse Cellular Functions." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32081014 32081014]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00843 10.1021/acs.jproteome.9b00843]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32081014 8]. | ||
+ | #Peters F, Tellkamp F, Brodesser S, Wachsmuth E, Tosetti B, Karow U, Bloch W, Utermöhlen O, Krönke M, Niessen CM, (2020) "Murine Epidermal Ceramide Synthase 4 is a Key Regulator of Skin Barrier Homeostasis." <i>J Invest Dermatol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32092351 32092351]; doi: [https://dx.doi.org/10.1016/j.jid.2020.02.006 10.1016/j.jid.2020.02.006]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32092351 40]. | ||
+ | #Fan Y, Cheng Y, Li Y, Chen B, Wang Z, Wei T, Zhang H, Guo Y, Wang Q, Wei Y, Chen F, Sha J, Guo X, Wang L, (2020) "Phosphoproteomic Analysis of Neonatal Regenerative Myocardium Revealed Important Roles of CHK1 via Activating mTORC1/P70S6K Pathway." <i>Circulation</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32098494 32098494]; doi: [https://dx.doi.org/10.1161/CIRCULATIONAHA.119.040747 10.1161/CIRCULATIONAHA.119.040747]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32098494 31]. | ||
+ | #Zhang J, Tang N, Zhao Y, Zhao R, Fu X, Zhao D, Zhao Y, Huang L, Li C, Qiu Y, Xue B, Fang L, (2020) "Global Phosphoproteomic Analysis Reveals Significant Metabolic Reprogramming in the Termination of Liver Regeneration in Mice." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32105074 32105074]; doi: [https://dx.doi.org/10.1021/acs.jproteome.0c00028 10.1021/acs.jproteome.0c00028]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32105074 24]. | ||
+ | #Kwon OK, Ha YS, Na AY, Chun SY, Kwon TG, Lee JN, Lee S, (2020) "Identification of Novel Prognosis and Prediction Markers in Advanced Prostate Cancer Tissues Based on Quantitative Proteomics." <i>Cancer Genomics Proteomics</i> <b>17</b>(2):195–208; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32108042 32108042]; doi: [https://dx.doi.org/10.21873/cgp.20180 10.21873/cgp.20180]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32108042 5]. | ||
+ | #Villaseñor R, Pfaendler R, Ambrosi C, Butz S, Giuliani S, Bryan E, Sheahan TW, Gable AL, Schmolka N, Manzo M, Wirz J, Feller C, von Mering C, Aebersold R, Voigt P, Baubec T, (2020) "ChromID identifies the protein interactome at chromatin marks." <i>Nat Biotechnol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32123383 32123383]; doi: [https://dx.doi.org/10.1038/s41587-020-0434-2 10.1038/s41587-020-0434-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32123383 32]. | ||
+ | #Subbannayya Y, Pinto SM, Mohanty V, Dagamajalu S, Prasad TSK, Murthy KR, (2020) "What Makes Cornea Immunologically Unique and Privileged? Mechanistic Clues from a High-Resolution Proteomic Landscape of the Human Cornea." <i>OMICS</i> <b>24</b>(3):129–139; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32125911 32125911]; doi: [https://dx.doi.org/10.1089/omi.2019.0190 10.1089/omi.2019.0190]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32125911 2]. | ||
+ | #Ding H, Fazelinia H, Spruce LA, Weiss DA, Zderic SA, Seeholzer SH, (2020) "Urine proteomics: Evaluation of different sample preparation workflows for quantitative, reproducible and improved depth of analysis." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32129078 32129078]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00772 10.1021/acs.jproteome.9b00772]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32129078 16]. | ||
+ | #Bernatik O, Pejskova P, Vyslouzil D, Hanakova K, Zdrahal Z, Cajanek L, (2020) "Phosphorylation of multiple proteins involved in ciliogenesis by Tau Tubulin kinase 2." <i>Mol Biol Cell</i> <b></b>:mbcE19060334; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32129703 32129703]; doi: [https://dx.doi.org/10.1091/mbc.E19-06-0334 10.1091/mbc.E19-06-0334]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32129703 165]. | ||
+ | #Montellese C, van den Heuvel J, Ashiono C, Dörner K, Melnik A, Jonas S, Zemp I, Picotti P, Gillet LC, Kutay U, (2020) "USP16 counteracts mono-ubiquitination of RPS27a and promotes maturation of the 40S ribosomal subunit." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32129764 32129764]; doi: [https://dx.doi.org/10.7554/eLife.54435 10.7554/eLife.54435]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32129764 18]. | ||
+ | #Ramat A, Garcia-Silva MR, Jahan C, Naït-Saïdi R, Dufourt J, Garret C, Chartier A, Cremaschi J, Patel V, Decourcelle M, Bastide A, Juge F, Simonelig M, (2020) "The PIWI protein Aubergine recruits eIF3 to activate translation in the germ plasm." <i>Cell Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32132673 32132673]; doi: [https://dx.doi.org/10.1038/s41422-020-0294-9 10.1038/s41422-020-0294-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32132673 12]. | ||
+ | #Tannous A, Boonen M, Zheng H, Zhao C, Germain CJ, Moore DF, Sleat DE, Jadot M, Lobel P, (2020) "Comparative Analysis of Quantitative Mass Spectrometric Methods for Subcellular Proteomics." <i>J Proteome Res</i> <b>19</b>(4):1718–1730; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32134668 32134668]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00862 10.1021/acs.jproteome.9b00862]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32134668 25]. | ||
+ | #Shayan R, Rinaldi D, Larburu N, Plassart L, Balor S, Bouyssié D, Lebaron S, Marcoux J, Gleizes PE, Plisson-Chastang C, (2020) "Good Vibrations: Structural Remodeling of Maturing Yeast Pre-40S Ribosomal Particles Followed by Cryo-Electron Microscopy." <i>Molecules</i> <b>25</b>(5):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32138239 32138239]; doi: [https://dx.doi.org/10.3390/molecules25051125 10.3390/molecules25051125]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32138239 2]. | ||
+ | #Parker BL, Kiens B, Wojtaszewski JFP, Richter EA, James DE, (2020) "Quantification of exercise-regulated ubiquitin signaling in human skeletal muscle identifies protein modification cross talk via NEDDylation." <i>FASEB J</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32141134 32141134]; doi: [https://dx.doi.org/10.1096/fj.202000075R 10.1096/fj.202000075R]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32141134 45]. | ||
+ | #Wilson JP, Ipsaro JJ, Del Giudice SN, Turna NS, Gauss CM, Dusenbury KH, Marquart K, Rivera KD, Pappin DJ, (2020) "Tryp-N: A Thermostable Protease for the Production of N-terminal Argininyl and Lysinyl Peptides." <i>J Proteome Res</i> <b>19</b>(4):1459–1469; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32141294 32141294]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00713 10.1021/acs.jproteome.9b00713]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32141294 3]. | ||
+ | #Dietachmayr M, Rathakrishnan A, Karpiuk O, von Zweydorf F, Engleitner T, Fernández-Sáiz V, Schenk P, Ueffing M, Rad R, Eilers M, Gloeckner CJ, Clemm von Hohenberg K, Bassermann F, (2020) "Antagonistic activities of CDC14B and CDK1 on USP9X regulate WT1-dependent mitotic transcription and survival." <i>Nat Commun</i> <b>11</b>(1):1268; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32152317 32152317]; doi: [https://dx.doi.org/10.1038/s41467-020-15059-5 10.1038/s41467-020-15059-5]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32152317 3]. | ||
+ | #Wan X, Vomund AN, Peterson OJ, Chervonsky AV, Lichti CF, Unanue ER, (2020) "The MHC-II peptidome of pancreatic islets identifies key features of autoimmune peptides." <i>Nat Immunol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32152506 32152506]; doi: [https://dx.doi.org/10.1038/s41590-020-0623-7 10.1038/s41590-020-0623-7]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32152506 9]. | ||
+ | #Coscia F, Doll S, Bech JM, Schweizer L, Mund A, Lengyel E, Lindebjerg J, Madsen GI, Moreira JMA, Mann M, (2020) "A streamlined mass spectrometry-based proteomics workflow for large scale FFPE tissue analysis." <i>J Pathol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32154592 32154592]; doi: [https://dx.doi.org/10.1002/path.5420 10.1002/path.5420]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32154592 52]. | ||
+ | #Yin CF, Kao SC, Hsu CL, Chang YW, Cheung CHY, Huang HC, Juan HF, (2020) "Phosphoproteome Analysis Reveals Dynamic Heat Shock Protein 27 Phosphorylation in Tanshinone IIA-Induced Cell Death." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32154729 32154729]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00836 10.1021/acs.jproteome.9b00836]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32154729 168]. | ||
+ | #Chong C, Müller M, Pak H, Harnett D, Huber F, Grun D, Leleu M, Auger A, Arnaud M, Stevenson BJ, Michaux J, Bilic I, Hirsekorn A, Calviello L, Simó-Riudalbas L, Planet E, Lubiński J, Bryśkiewicz M, Wiznerowicz M, Xenarios I, Zhang L, Trono D, Harari A, Ohler U, Coukos G, Bassani-Sternberg M, (2020) "Integrated proteogenomic deep sequencing and analytics accurately identify non-canonical peptides in tumor immunopeptidomes." <i>Nat Commun</i> <b>11</b>(1):1293; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32157095 32157095]; doi: [https://dx.doi.org/10.1038/s41467-020-14968-9 10.1038/s41467-020-14968-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32157095 85]. | ||
+ | #Wegrzyn AB, Herzog K, Gerding A, Kwiatkowski M, Wolters JC, Dolga AM, van Lint AEM, Wanders RJA, Waterham HR, Bakker BM, (2020) "Fibroblast-specific genome-scale modelling predicts an imbalance in amino acid metabolism in Refsum disease." <i>FEBS J</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32160399 32160399]; doi: [https://dx.doi.org/10.1111/febs.15292 10.1111/febs.15292]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32160399 71]. | ||
+ | #Chen L, Shi H, Koftori D, Sekine T, Nicastri A, Ternette N, Bowness P, (2020) "Identification of an unconventional sub-peptidome bound to the Behçet's disease - associated HLA-B*51:01 that is regulated by endoplasmic reticulum aminopeptidase 1 (ERAP1)." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32161166 32161166]; doi: [https://dx.doi.org/10.1074/mcp.RA119.001617 10.1074/mcp.RA119.001617]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32161166 11]. | ||
+ | #Carnesecchi J, Sigismondo G, Domsch K, Baader CEP, Rafiee MR, Krijgsveld J, Lohmann I, (2020) "Multi-level and lineage-specific interactomes of the Hox transcription factor Ubx contribute to its functional specificity." <i>Nat Commun</i> <b>11</b>(1):1388; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32170121 32170121]; doi: [https://dx.doi.org/10.1038/s41467-020-15223-x 10.1038/s41467-020-15223-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32170121 36]. | ||
+ | #Aasebø E, Berven FS, Bartaula-Brevik S, Stokowy T, Hovland R, Vaudel M, Døskeland SO, McCormack E, Batth TS, Olsen JV, Bruserud Ø, Selheim F, Hernandez-Valladares M, (2020) "Proteome and Phosphoproteome Changes Associated with Prognosis in Acute Myeloid Leukemia." <i>Cancers (Basel)</i> <b>12</b>(3):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32192169 32192169]; doi: [https://dx.doi.org/10.3390/cancers12030709 10.3390/cancers12030709]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32192169 214]. | ||
+ | #Ooi CP, Benz C, Urbaniak MD, (2020) "Phosphoproteomic analysis of mammalian infective Trypanosoma brucei subjected to heat shock suggests atypical mechanisms for thermotolerance." <i>J Proteomics</i> <b>219</b>:103735; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32198071 32198071]; doi: [https://dx.doi.org/10.1016/j.jprot.2020.103735 10.1016/j.jprot.2020.103735]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32198071 6]. | ||
+ | #Guergues J, Wohlfahrt J, Zhang P, Liu B, Stevens SM Jr, (2020) "Deep proteome profiling reveals novel pathways associated with pro-inflammatory and alcohol-induced microglial activation phenotypes." <i>J Proteomics</i> <b>220</b>:103753; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32200115 32200115]; doi: [https://dx.doi.org/10.1016/j.jprot.2020.103753 10.1016/j.jprot.2020.103753]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32200115 30]. | ||
+ | #Li J, Van Vranken JG, Pontano Vaites L, Schweppe DK, Huttlin EL, Etienne C, Nandhikonda P, Viner R, Robitaille AM, Thompson AH, Kuhn K, Pike I, Bomgarden RD, Rogers JC, Gygi SP, Paulo JA, (2020) "TMTpro reagents: a set of isobaric labeling mass tags enables simultaneous proteome-wide measurements across 16 samples." <i>Nat Methods</i> <b>17</b>(4):399–404; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32203386 32203386]; doi: [https://dx.doi.org/10.1038/s41592-020-0781-4 10.1038/s41592-020-0781-4]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32203386 9]. | ||
+ | #Campbell K, Westholm J, Kasvandik S, Di Bartolomeo F, Mormino M, Nielsen J, (2020) "Building blocks are synthesized on demand during the yeast cell cycle." <i>Proc Natl Acad Sci U S A</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32213592 32213592]; doi: [https://dx.doi.org/10.1073/pnas.1919535117 10.1073/pnas.1919535117]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32213592 105]. | ||
+ | #Rinfret Robert C, McManus FP, Lamoliatte F, Thibault P, (2020) "Interplay of Ubiquitin-Like Modifiers Following Arsenic Trioxide Treatment." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32223133 32223133]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00807 10.1021/acs.jproteome.9b00807]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32223133 18]. | ||
+ | #Hör J, Garriss G, Di Giorgio S, Hack LM, Vanselow JT, Förstner KU, Schlosser A, Henriques-Normark B, Vogel J, (2020) "Grad-seq in a Gram-positive bacterium reveals exonucleolytic sRNA activation in competence control." <i>EMBO J</i> <b></b>:e103852; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32227509 32227509]; doi: [https://dx.doi.org/10.15252/embj.2019103852 10.15252/embj.2019103852]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32227509 184]. | ||
+ | #Reustle A, Di Marco M, Meyerhoff C, Nelde A, Walz JS, Winter S, Kandabarau S, Büttner F, Haag M, Backert L, Kowalewski DJ, Rausch S, Hennenlotter J, Stühler V, Scharpf M, Fend F, Stenzl A, Rammensee HG, Bedke J, Stevanović S, Schwab M, Schaeffeler E, (2020) "Integrative -omics and HLA-ligandomics analysis to identify novel drug targets for ccRCC immunotherapy." <i>Genome Med</i> <b>12</b>(1):32; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32228647 32228647]; doi: [https://dx.doi.org/10.1186/s13073-020-00731-8 10.1186/s13073-020-00731-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32228647 1017]. | ||
+ | #Atlasi Y, Jafarnejad SM, Gkogkas CG, Vermeulen M, Sonenberg N, Stunnenberg HG, (2020) "The translational landscape of ground state pluripotency." <i>Nat Commun</i> <b>11</b>(1):1617; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32238817 32238817]; doi: [https://dx.doi.org/10.1038/s41467-020-15449-9 10.1038/s41467-020-15449-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32238817 48]. | ||
+ | #Huang C, Foster SR, Shah AD, Kleifeld O, Canals M, Schittenhelm RB, Stone MJ, (2020) "Phosphoproteomic characterization of the signaling network resulting from activation of chemokine receptor CCR2." <i>J Biol Chem</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32241914 32241914]; doi: [https://dx.doi.org/10.1074/jbc.RA119.012026 10.1074/jbc.RA119.012026]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32241914 72]. | ||
+ | #Morishita Y, Kabil O, Young KZ, Kellogg AP, Chang A, Arvan P, (2020) "Thyrocyte cell survival and adaptation to chronic endoplasmic reticulum stress due to misfolded thyroglobulin." <i>J Biol Chem</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32241916 32241916]; doi: [https://dx.doi.org/10.1074/jbc.RA120.012656 10.1074/jbc.RA120.012656]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32241916 1]. | ||
+ | #Mizukami H, Hathway B, Procopio N, (2020) "Aquatic Decomposition of Mammalian Corpses: A Forensic Proteomic Approach." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32242669 32242669]; doi: [https://dx.doi.org/10.1021/acs.jproteome.0c00060 10.1021/acs.jproteome.0c00060]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32242669 22]. | ||
+ | #Xu G, Fromholt SE, Chakrabarty P, Zhu F, Liu X, Pace MC, Koh J, Golde TE, Levites Y, Lewis J, Borchelt DR, (2020) "Diversity in Aβ deposit morphology and secondary proteome insolubility across models of Alzheimer-type amyloidosis." <i>Acta Neuropathol Commun</i> <b>8</b>(1):43; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32252825 32252825]; doi: [https://dx.doi.org/10.1186/s40478-020-00911-y 10.1186/s40478-020-00911-y]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32252825 57]. | ||
+ | #Carter SP, Moran AL, Matallanas D, McManus GJ, Blacque OE, Kennedy BN, (2020) "Genetic Deletion of Zebrafish Rab28 Causes Defective Outer Segment Shedding, but Not Retinal Degeneration." <i>Front Cell Dev Biol</i> <b>8</b>:136; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32258030 32258030]; doi: [https://dx.doi.org/10.3389/fcell.2020.00136 10.3389/fcell.2020.00136]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32258030 12]. | ||
+ | #Djomehri SI, Gonzalez ME, da Veiga Leprevost F, Tekula SR, Chang HY, White MJ, Cimino-Mathews A, Burman B, Basrur V, Argani P, Nesvizhskii AI, Kleer CG, (2020) "Quantitative proteomic landscape of metaplastic breast carcinoma pathological subtypes and their relationship to triple-negative tumors." <i>Nat Commun</i> <b>11</b>(1):1723; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32265444 32265444]; doi: [https://dx.doi.org/10.1038/s41467-020-15283-z 10.1038/s41467-020-15283-z]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32265444 4]. | ||
+ | #Busso CS, Guidry JJ, Gonzalez JJ, Zorba V, Son LS, Winsauer PJ, Walvekar RR, (2020) "A comprehensive analysis of sialolith proteins and the clinical implications." <i>Clin Proteomics</i> <b>17</b>:12; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32265614 32265614]; doi: [https://dx.doi.org/10.1186/s12014-020-09275-w 10.1186/s12014-020-09275-w]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32265614 1]. | ||
+ | #Rohlenova K, Goveia J, García-Caballero M, Subramanian A, Kalucka J, Treps L, Falkenberg KD, de Rooij LPMH, Zheng Y, Lin L, Sokol L, Teuwen LA, Geldhof V, Taverna F, Pircher A, Conradi LC, Khan S, Stegen S, Panovska D, De Smet F, Staal FJT, Mclaughlin RJ, Vinckier S, Van Bergen T, Ectors N, De Haes P, Wang J, Bolund L, Schoonjans L, Karakach TK, Yang H, Carmeliet G, Liu Y, Thienpont B, Dewerchin M, Eelen G, Li X, Luo Y, Carmeliet P, (2020) "Single-Cell RNA Sequencing Maps Endothelial Metabolic Plasticity in Pathological Angiogenesis." <i>Cell Metab</i> <b>31</b>(4):862–877.e14; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32268117 32268117]; doi: [https://dx.doi.org/10.1016/j.cmet.2020.03.009 10.1016/j.cmet.2020.03.009]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32268117 15]. | ||
+ | #Hoesl C, Zanuttigh E, Fröhlich T, Philippou-Massier J, Krebs S, Blum H, Dahlhoff M, (2020) "The secretome of skin cancer cells activates the mTOR/MYC pathway in healthy keratinocytes and induces tumorigenic properties." <i>Biochim Biophys Acta Mol Cell Res</i> <b>1867</b>(8):118717; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32283126 32283126]; doi: [https://dx.doi.org/10.1016/j.bbamcr.2020.118717 10.1016/j.bbamcr.2020.118717]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32283126 12]. | ||
+ | #Jarzab A, Kurzawa N, Hopf T, Moerch M, Zecha J, Leijten N, Bian Y, Musiol E, Maschberger M, Stoehr G, Becher I, Daly C, Samaras P, Mergner J, Spanier B, Angelov A, Werner T, Bantscheff M, Wilhelm M, Klingenspor M, Lemeer S, Liebl W, Hahne H, Savitski MM, Kuster B, (2020) "Meltome atlas-thermal proteome stability across the tree of life." <i>Nat Methods</i> <b>17</b>(5):495–503; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32284610 32284610]; doi: [https://dx.doi.org/10.1038/s41592-020-0801-4 10.1038/s41592-020-0801-4]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32284610 31]. | ||
+ | #Goebel T, Mausbach S, Tuermer A, Eltahir H, Winter D, Gieselmann V, Thelen M, (2020) "Proteaphagy in mammalian cells can function independent of ATG5/ATG7." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32299840 32299840]; doi: [https://dx.doi.org/10.1074/mcp.RA120.001983 10.1074/mcp.RA120.001983]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32299840 149]. | ||
+ | #Chen Z, Wang C, Lei C, Feng X, Li C, Jung SY, Qin J, Chen J, (2020) "Phosphoproteomics Analysis Reveals a Potential Role of CHK1 in Regulation of Innate Immunity through IRF3." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32314919 32314919]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00829 10.1021/acs.jproteome.9b00829]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32314919 48]. | ||
+ | #Pourhaghighi R, Ash PEA, Phanse S, Goebels F, Hu LZM, Chen S, Zhang Y, Wierbowski SD, Boudeau S, Moutaoufik MT, Malty RH, Malolepsza E, Tsafou K, Nathan A, Cromar G, Guo H, Abdullatif AA, Apicco DJ, Becker LA, Gitler AD, Pulst SM, Youssef A, Hekman R, Havugimana PC, White CA, Blum BC, Ratti A, Bryant CD, Parkinson J, Lage K, Babu M, Yu H, Bader GD, Wolozin B, Emili A, (2020) "BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain." <i>Cell Syst</i> <b>10</b>(4):333–350.e14; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32325033 32325033]; doi: [https://dx.doi.org/10.1016/j.cels.2020.03.003 10.1016/j.cels.2020.03.003]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32325033 578]. |
GPMDB was originally constructed to serve as a reference work for all publicly available proteomics generated using tandem mass spectrometry. Public data is downloaded and reanalyzed using the current version of X! Tandem. The result files generated by the reanalysis and the relevant metadata are imported into the database and made available through the associated web site, ftp site and REST interfaces.
Contents |
The following public data repositories are checked daily for new suitable raw data for reanalysis:
Data made available from specific large projects, such as CPTAC or the Human Proteome Atlas, are also included when they are made available. Every effort is made so that reanalyzed results from all data sources are made available within 48 hours of their being released. In addition, data from lab web sites, ftp sites and direct contributions through the GPM sites made available to researchers are imported into GPMDB as part of a daily incremental update process.
GPMDB has been in operation since Jan. 1, 2004. Several large data source repositories have come into existence and ceased activity in the period since that time. All of the data from those repositories (e.g., TRANCHE, Peptidome) were reanalyzed and stored in GPMDB and they are still available even though the source repository sites are no longer active.
Simply because data is made available does not mean that it will be included in GPMDB. The data must be approved our quality control AI for its initial acceptance and it may be rejected subsequently because of either quality or originality concerns.
CAUTION: Many papers contain serious errors in their Methods sections. When using data from the literature, it is important to be skeptical of any experimental parameter (cell line, tissue type, modification reagents, quantitation methoods, etc.) that may impact on your use of the data. We have tried to correct any obvious errors, but there is no way to guarantee that we found them all. When attempting to analyze or reproduce results, keep in mind the likelyhood that even key parts of the experiment methods may have been recorded incorrectly in the associated manuscript, as methods are rarely reviewed properly in the current journal publication process.
The following is a list of data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list was current, as of May 10, 2020.