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#Ito J, Batth TS, Petzold CJ, Redding-Johanson AM, Mukhopadhyay A, Verboom R, Meyer EH, Millar AH, Heazlewood JL, (2011) "Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism." <i>J Proteome Res</i> <b>10</b>(4):1571–82; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21166475 21166475]; doi: [https://dx.doi.org/10.1021/pr1009433 10.1021/pr1009433]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21166475 3]. | #Ito J, Batth TS, Petzold CJ, Redding-Johanson AM, Mukhopadhyay A, Verboom R, Meyer EH, Millar AH, Heazlewood JL, (2011) "Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism." <i>J Proteome Res</i> <b>10</b>(4):1571–82; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21166475 21166475]; doi: [https://dx.doi.org/10.1021/pr1009433 10.1021/pr1009433]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21166475 3]. | ||
#Lee JE, Sweredoski MJ, Graham RL, Kolawa NJ, Smith GT, Hess S, Deshaies RJ, (2011) "The steady-state repertoire of human SCF ubiquitin ligase complexes does not require ongoing Nedd8 conjugation." <i>Mol Cell Proteomics</i> <b>10</b>(5):M110.006460; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21169563 21169563]; doi: [https://dx.doi.org/10.1074/mcp.M110.006460 10.1074/mcp.M110.006460]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21169563 41]. | #Lee JE, Sweredoski MJ, Graham RL, Kolawa NJ, Smith GT, Hess S, Deshaies RJ, (2011) "The steady-state repertoire of human SCF ubiquitin ligase complexes does not require ongoing Nedd8 conjugation." <i>Mol Cell Proteomics</i> <b>10</b>(5):M110.006460; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21169563 21169563]; doi: [https://dx.doi.org/10.1074/mcp.M110.006460 10.1074/mcp.M110.006460]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21169563 41]. | ||
- | #Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villén J, Haas W, Sowa ME, Gygi SP, (2010) "A tissue-specific atlas of mouse protein phosphorylation and expression." <i>Cell</i> <b>143</b>(7):1174–89; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21183079 21183079]; doi: [https://dx.doi.org/10.1016/j.cell.2010.12.001 10.1016/j.cell.2010.12.001]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21183079 | + | #Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villén J, Haas W, Sowa ME, Gygi SP, (2010) "A tissue-specific atlas of mouse protein phosphorylation and expression." <i>Cell</i> <b>143</b>(7):1174–89; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21183079 21183079]; doi: [https://dx.doi.org/10.1016/j.cell.2010.12.001 10.1016/j.cell.2010.12.001]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21183079 562]. |
#Brockmeyer C, Paster W, Pepper D, Tan CP, Trudgian DC, McGowan S, Fu G, Gascoigne NR, Acuto O, Salek M, (2011) "T cell receptor (TCR)-induced tyrosine phosphorylation dynamics identifies THEMIS as a new TCR signalosome component." <i>J Biol Chem</i> <b>286</b>(9):7535–47; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21189249 21189249]; doi: [https://dx.doi.org/10.1074/jbc.M110.201236 10.1074/jbc.M110.201236]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21189249 4]. | #Brockmeyer C, Paster W, Pepper D, Tan CP, Trudgian DC, McGowan S, Fu G, Gascoigne NR, Acuto O, Salek M, (2011) "T cell receptor (TCR)-induced tyrosine phosphorylation dynamics identifies THEMIS as a new TCR signalosome component." <i>J Biol Chem</i> <b>286</b>(9):7535–47; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21189249 21189249]; doi: [https://dx.doi.org/10.1074/jbc.M110.201236 10.1074/jbc.M110.201236]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21189249 4]. | ||
#Manes NP, Dong L, Zhou W, Du X, Reghu N, Kool AC, Choi D, Bailey CL, Petricoin EF 3rd, Liotta LA, Popov SG, (2011) "Discovery of mouse spleen signaling responses to anthrax using label-free quantitative phosphoproteomics via mass spectrometry." <i>Mol Cell Proteomics</i> <b>10</b>(3):M110.000927; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21189417 21189417]; doi: [https://dx.doi.org/10.1074/mcp.M110.000927 10.1074/mcp.M110.000927]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21189417 133]. | #Manes NP, Dong L, Zhou W, Du X, Reghu N, Kool AC, Choi D, Bailey CL, Petricoin EF 3rd, Liotta LA, Popov SG, (2011) "Discovery of mouse spleen signaling responses to anthrax using label-free quantitative phosphoproteomics via mass spectrometry." <i>Mol Cell Proteomics</i> <b>10</b>(3):M110.000927; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21189417 21189417]; doi: [https://dx.doi.org/10.1074/mcp.M110.000927 10.1074/mcp.M110.000927]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21189417 133]. | ||
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#Kettenbach AN, Deng L, Wu Y, Baldissard S, Adamo ME, Gerber SA, Moseley JB, (2015) "Quantitative phosphoproteomics reveals pathways for coordination of cell growth and division by the conserved fission yeast kinase pom1." <i>Mol Cell Proteomics</i> <b>14</b>(5):1275–87; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25720772 25720772]; doi: [https://dx.doi.org/10.1074/mcp.M114.045245 10.1074/mcp.M114.045245]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25720772 96]. | #Kettenbach AN, Deng L, Wu Y, Baldissard S, Adamo ME, Gerber SA, Moseley JB, (2015) "Quantitative phosphoproteomics reveals pathways for coordination of cell growth and division by the conserved fission yeast kinase pom1." <i>Mol Cell Proteomics</i> <b>14</b>(5):1275–87; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25720772 25720772]; doi: [https://dx.doi.org/10.1074/mcp.M114.045245 10.1074/mcp.M114.045245]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25720772 96]. | ||
#González-Prieto R, Cuijpers SA, Luijsterburg MS, van Attikum H, Vertegaal AC, (2015) "SUMOylation and PARylation cooperate to recruit and stabilize SLX4 at DNA damage sites." <i>EMBO Rep</i> <b>16</b>(4):512–9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25722289 25722289]; doi: [https://dx.doi.org/10.15252/embr.201440017 10.15252/embr.201440017]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25722289 27]. | #González-Prieto R, Cuijpers SA, Luijsterburg MS, van Attikum H, Vertegaal AC, (2015) "SUMOylation and PARylation cooperate to recruit and stabilize SLX4 at DNA damage sites." <i>EMBO Rep</i> <b>16</b>(4):512–9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25722289 25722289]; doi: [https://dx.doi.org/10.15252/embr.201440017 10.15252/embr.201440017]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25722289 27]. | ||
- | #Keshishian H, Burgess MW, Gillette MA, Mertins P, Clauser KR, Mani DR, Kuhn EW, Farrell LA, Gerszten RE, Carr SA, (2015) "Multiplexed, Quantitative Workflow for Sensitive Biomarker Discovery in Plasma Yields Novel Candidates for Early Myocardial Injury." <i>Mol Cell Proteomics</i> <b>14</b>(9):2375–93; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25724909 25724909]; doi: [https://dx.doi.org/10.1074/mcp.M114.046813 10.1074/mcp.M114.046813]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25724909 | + | #Keshishian H, Burgess MW, Gillette MA, Mertins P, Clauser KR, Mani DR, Kuhn EW, Farrell LA, Gerszten RE, Carr SA, (2015) "Multiplexed, Quantitative Workflow for Sensitive Biomarker Discovery in Plasma Yields Novel Candidates for Early Myocardial Injury." <i>Mol Cell Proteomics</i> <b>14</b>(9):2375–93; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25724909 25724909]; doi: [https://dx.doi.org/10.1074/mcp.M114.046813 10.1074/mcp.M114.046813]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25724909 322]. |
#Vogel CJ, Smit MA, Maddalo G, Possik PA, Sparidans RW, van der Burg SH, Verdegaal EM, Heck AJ, Samatar AA, Beijnen JH, Altelaar AF, Peeper DS, (2015) "Cooperative induction of apoptosis in NRAS mutant melanoma by inhibition of MEK and ROCK." <i>Pigment Cell Melanoma Res</i> <b>28</b>(3):307–17; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25728708 25728708]; doi: [https://dx.doi.org/10.1111/pcmr.12364 10.1111/pcmr.12364]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25728708 170]. | #Vogel CJ, Smit MA, Maddalo G, Possik PA, Sparidans RW, van der Burg SH, Verdegaal EM, Heck AJ, Samatar AA, Beijnen JH, Altelaar AF, Peeper DS, (2015) "Cooperative induction of apoptosis in NRAS mutant melanoma by inhibition of MEK and ROCK." <i>Pigment Cell Melanoma Res</i> <b>28</b>(3):307–17; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25728708 25728708]; doi: [https://dx.doi.org/10.1111/pcmr.12364 10.1111/pcmr.12364]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25728708 170]. | ||
#Zhang H, Deery MJ, Gannon L, Powers SJ, Lilley KS, Theodoulou FL, (2015) "Quantitative proteomics analysis of the Arg/N-end rule pathway of targeted degradation in Arabidopsis roots." <i>Proteomics</i> <b>15</b>(14):2447–57; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25728785 25728785]; doi: [https://dx.doi.org/10.1002/pmic.201400530 10.1002/pmic.201400530]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25728785 14]. | #Zhang H, Deery MJ, Gannon L, Powers SJ, Lilley KS, Theodoulou FL, (2015) "Quantitative proteomics analysis of the Arg/N-end rule pathway of targeted degradation in Arabidopsis roots." <i>Proteomics</i> <b>15</b>(14):2447–57; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25728785 25728785]; doi: [https://dx.doi.org/10.1002/pmic.201400530 10.1002/pmic.201400530]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25728785 14]. | ||
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#Madeira JP, Alpha-Bazin B, Armengaud J, Duport C, (2015) "Time dynamics of the Bacillus cereus exoproteome are shaped by cellular oxidation." <i>Front Microbiol</i> <b>6</b>:342; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25954265 25954265]; doi: [https://dx.doi.org/10.3389/fmicb.2015.00342 10.3389/fmicb.2015.00342]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25954265 30]. | #Madeira JP, Alpha-Bazin B, Armengaud J, Duport C, (2015) "Time dynamics of the Bacillus cereus exoproteome are shaped by cellular oxidation." <i>Front Microbiol</i> <b>6</b>:342; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25954265 25954265]; doi: [https://dx.doi.org/10.3389/fmicb.2015.00342 10.3389/fmicb.2015.00342]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25954265 30]. | ||
#Walther DM, Kasturi P, Zheng M, Pinkert S, Vecchi G, Ciryam P, Morimoto RI, Dobson CM, Vendruscolo M, Mann M, Hartl FU, (2015) "Widespread Proteome Remodeling and Aggregation in Aging C. elegans." <i>Cell</i> <b>161</b>(4):919–32; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25957690 25957690]; doi: [https://dx.doi.org/10.1016/j.cell.2015.03.032 10.1016/j.cell.2015.03.032]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25957690 278]. | #Walther DM, Kasturi P, Zheng M, Pinkert S, Vecchi G, Ciryam P, Morimoto RI, Dobson CM, Vendruscolo M, Mann M, Hartl FU, (2015) "Widespread Proteome Remodeling and Aggregation in Aging C. elegans." <i>Cell</i> <b>161</b>(4):919–32; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25957690 25957690]; doi: [https://dx.doi.org/10.1016/j.cell.2015.03.032 10.1016/j.cell.2015.03.032]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25957690 278]. | ||
+ | #George IS, Pascovici D, Mirzaei M, Haynes PA, (2015) "Quantitative proteomic analysis of cabernet sauvignon grape cells exposed to thermal stresses reveals alterations in sugar and phenylpropanoid metabolism." <i>Proteomics</i> <b>15</b>(17):3048–60; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25959233 25959233]; doi: [https://dx.doi.org/10.1002/pmic.201400541 10.1002/pmic.201400541]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25959233 60]. | ||
#Hosp F, Vossfeldt H, Heinig M, Vasiljevic D, Arumughan A, Wyler E, Genetic and Environmental Risk for Alzheimer’s Disease GERAD1 Consortium., Landthaler M, Hubner N, Wanker EE, Lannfelt L, Ingelsson M, Lalowski M, Voigt A, Selbach M, (2015) "Quantitative interaction proteomics of neurodegenerative disease proteins." <i>Cell Rep</i> <b>11</b>(7):1134–46; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25959826 25959826]; doi: [https://dx.doi.org/10.1016/j.celrep.2015.04.030 10.1016/j.celrep.2015.04.030]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25959826 122]. | #Hosp F, Vossfeldt H, Heinig M, Vasiljevic D, Arumughan A, Wyler E, Genetic and Environmental Risk for Alzheimer’s Disease GERAD1 Consortium., Landthaler M, Hubner N, Wanker EE, Lannfelt L, Ingelsson M, Lalowski M, Voigt A, Selbach M, (2015) "Quantitative interaction proteomics of neurodegenerative disease proteins." <i>Cell Rep</i> <b>11</b>(7):1134–46; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25959826 25959826]; doi: [https://dx.doi.org/10.1016/j.celrep.2015.04.030 10.1016/j.celrep.2015.04.030]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25959826 122]. | ||
#Tay AP, Pang CN, Twine NA, Hart-Smith G, Harkness L, Kassem M, Wilkins MR, (2015) "Proteomic Validation of Transcript Isoforms, Including Those Assembled from RNA-Seq Data." <i>J Proteome Res</i> <b>14</b>(9):3541–54; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25961807 25961807]; doi: [https://dx.doi.org/10.1021/pr5011394 10.1021/pr5011394]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25961807 77]. | #Tay AP, Pang CN, Twine NA, Hart-Smith G, Harkness L, Kassem M, Wilkins MR, (2015) "Proteomic Validation of Transcript Isoforms, Including Those Assembled from RNA-Seq Data." <i>J Proteome Res</i> <b>14</b>(9):3541–54; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25961807 25961807]; doi: [https://dx.doi.org/10.1021/pr5011394 10.1021/pr5011394]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25961807 77]. | ||
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#Reddy RJ, Gajadhar AS, Swenson EJ, Rothenberg DA, Curran TG, White FM, (2016) "Early signaling dynamics of the epidermal growth factor receptor." <i>Proc Natl Acad Sci U S A</i> <b>113</b>(11):3114–9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26929352 26929352]; doi: [https://dx.doi.org/10.1073/pnas.1521288113 10.1073/pnas.1521288113]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26929352 30]. | #Reddy RJ, Gajadhar AS, Swenson EJ, Rothenberg DA, Curran TG, White FM, (2016) "Early signaling dynamics of the epidermal growth factor receptor." <i>Proc Natl Acad Sci U S A</i> <b>113</b>(11):3114–9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26929352 26929352]; doi: [https://dx.doi.org/10.1073/pnas.1521288113 10.1073/pnas.1521288113]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26929352 30]. | ||
#Bigenzahn JW, Fauster A, Rebsamen M, Kandasamy RK, Scorzoni S, Vladimer GI, Müller AC, Gstaiger M, Zuber J, Bennett KL, Superti-Furga G, (2016) "An Inducible Retroviral Expression System for Tandem Affinity Purification Mass-Spectrometry-Based Proteomics Identifies Mixed Lineage Kinase Domain-like Protein (MLKL) as an Heat Shock Protein 90 (HSP90) Client." <i>Mol Cell Proteomics</i> <b>15</b>(3):1139–50; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26933192 26933192]; doi: [https://dx.doi.org/10.1074/mcp.O115.055350 10.1074/mcp.O115.055350 ]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26933192 16]. | #Bigenzahn JW, Fauster A, Rebsamen M, Kandasamy RK, Scorzoni S, Vladimer GI, Müller AC, Gstaiger M, Zuber J, Bennett KL, Superti-Furga G, (2016) "An Inducible Retroviral Expression System for Tandem Affinity Purification Mass-Spectrometry-Based Proteomics Identifies Mixed Lineage Kinase Domain-like Protein (MLKL) as an Heat Shock Protein 90 (HSP90) Client." <i>Mol Cell Proteomics</i> <b>15</b>(3):1139–50; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26933192 26933192]; doi: [https://dx.doi.org/10.1074/mcp.O115.055350 10.1074/mcp.O115.055350 ]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26933192 16]. | ||
+ | #Oh DY, Dowling DJ, Ahmed S, Choi H, Brightman S, Bergelson I, Berger ST, Sauld JF, Pettengill M, Kho AT, Pollack HJ, Steen H, Levy O, (2016) "Adjuvant-induced Human Monocyte Secretome Profiles Reveal Adjuvant- and Age-specific Protein Signatures." <i>Mol Cell Proteomics</i> <b>15</b>(6):1877–94; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26933193 26933193]; doi: [https://dx.doi.org/10.1074/mcp.M115.055541 10.1074/mcp.M115.055541]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26933193 86]. | ||
#de Torre-Minguela C, Barberà-Cremades M, Gómez AI, Martín-Sánchez F, Pelegrín P, (2016) "Macrophage activation and polarization modify P2X7 receptor secretome influencing the inflammatory process." <i>Sci Rep</i> <b>6</b>:22586; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26935289 26935289]; doi: [https://dx.doi.org/10.1038/srep22586 10.1038/srep22586]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26935289 118]. | #de Torre-Minguela C, Barberà-Cremades M, Gómez AI, Martín-Sánchez F, Pelegrín P, (2016) "Macrophage activation and polarization modify P2X7 receptor secretome influencing the inflammatory process." <i>Sci Rep</i> <b>6</b>:22586; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26935289 26935289]; doi: [https://dx.doi.org/10.1038/srep22586 10.1038/srep22586]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26935289 118]. | ||
#Ly A, Merl-Pham J, Priller M, Gruhn F, Senninger N, Ueffing M, Hauck SM, (2016) "Proteomic Profiling Suggests Central Role Of STAT Signaling during Retinal Degeneration in the rd10 Mouse Model." <i>J Proteome Res</i> <b>15</b>(4):1350–9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26939627 26939627]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00111 10.1021/acs.jproteome.6b00111]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26939627 24]. | #Ly A, Merl-Pham J, Priller M, Gruhn F, Senninger N, Ueffing M, Hauck SM, (2016) "Proteomic Profiling Suggests Central Role Of STAT Signaling during Retinal Degeneration in the rd10 Mouse Model." <i>J Proteome Res</i> <b>15</b>(4):1350–9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26939627 26939627]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00111 10.1021/acs.jproteome.6b00111]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26939627 24]. | ||
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#Swenson JM, Colmenares SU, Strom AR, Costes SV, Karpen GH, (2016) "The composition and organization of Drosophila heterochromatin are heterogeneous and dynamic." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27514026 27514026]; doi: [https://dx.doi.org/10.7554/eLife.16096 10.7554/eLife.16096]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27514026 4]. | #Swenson JM, Colmenares SU, Strom AR, Costes SV, Karpen GH, (2016) "The composition and organization of Drosophila heterochromatin are heterogeneous and dynamic." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27514026 27514026]; doi: [https://dx.doi.org/10.7554/eLife.16096 10.7554/eLife.16096]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27514026 4]. | ||
#Naboulsi W, Bracht T, Megger DA, Reis H, Ahrens M, Turewicz M, Eisenacher M, Tautges S, Canbay AE, Meyer HE, Weber F, Baba HA, Sitek B, (2016) "Quantitative proteome analysis reveals the correlation between endocytosis-associated proteins and hepatocellular carcinoma dedifferentiation." <i>Biochim Biophys Acta</i> <b>1864</b>(11):1579–85; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27519163 27519163]; doi: [https://dx.doi.org/10.1016/j.bbapap.2016.08.005 10.1016/j.bbapap.2016.08.005]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27519163 36]. | #Naboulsi W, Bracht T, Megger DA, Reis H, Ahrens M, Turewicz M, Eisenacher M, Tautges S, Canbay AE, Meyer HE, Weber F, Baba HA, Sitek B, (2016) "Quantitative proteome analysis reveals the correlation between endocytosis-associated proteins and hepatocellular carcinoma dedifferentiation." <i>Biochim Biophys Acta</i> <b>1864</b>(11):1579–85; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27519163 27519163]; doi: [https://dx.doi.org/10.1016/j.bbapap.2016.08.005 10.1016/j.bbapap.2016.08.005]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27519163 36]. | ||
+ | #Hoare M, Ito Y, Kang TW, Weekes MP, Matheson NJ, Patten DA, Shetty S, Parry AJ, Menon S, Salama R, Antrobus R, Tomimatsu K, Howat W, Lehner PJ, Zender L, Narita M, (2016) "NOTCH1 mediates a switch between two distinct secretomes during senescence." <i>Nat Cell Biol</i> <b>18</b>(9):979–92; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27525720 27525720]; doi: [https://dx.doi.org/10.1038/ncb3397 10.1038/ncb3397]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27525720 4]. | ||
#Rasmussen MH, Lyskjær I, Jersie-Christensen RR, Tarpgaard LS, Primdal-Bengtson B, Nielsen MM, Pedersen JS, Hansen TP, Hansen F, Olsen JV, Pfeiffer P, Ørntoft TF, Andersen CL, (2016) "miR-625-3p regulates oxaliplatin resistance by targeting MAP2K6-p38 signalling in human colorectal adenocarcinoma cells." <i>Nat Commun</i> <b>7</b>:12436; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27526785 27526785]; doi: [https://dx.doi.org/10.1038/ncomms12436 10.1038/ncomms12436]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27526785 24]. | #Rasmussen MH, Lyskjær I, Jersie-Christensen RR, Tarpgaard LS, Primdal-Bengtson B, Nielsen MM, Pedersen JS, Hansen TP, Hansen F, Olsen JV, Pfeiffer P, Ørntoft TF, Andersen CL, (2016) "miR-625-3p regulates oxaliplatin resistance by targeting MAP2K6-p38 signalling in human colorectal adenocarcinoma cells." <i>Nat Commun</i> <b>7</b>:12436; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27526785 27526785]; doi: [https://dx.doi.org/10.1038/ncomms12436 10.1038/ncomms12436]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27526785 24]. | ||
#Chatterjee S, Stupp GS, Park SK, Ducom JC, Yates JR 3rd, Su AI, Wolan DW, (2016) "A comprehensive and scalable database search system for metaproteomics." <i>BMC Genomics</i> <b>17</b>(1):642; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27528457 27528457]; doi: [https://dx.doi.org/10.1186/s12864-016-2855-3 10.1186/s12864-016-2855-3]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27528457 28]. | #Chatterjee S, Stupp GS, Park SK, Ducom JC, Yates JR 3rd, Su AI, Wolan DW, (2016) "A comprehensive and scalable database search system for metaproteomics." <i>BMC Genomics</i> <b>17</b>(1):642; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27528457 27528457]; doi: [https://dx.doi.org/10.1186/s12864-016-2855-3 10.1186/s12864-016-2855-3]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27528457 28]. | ||
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#Wei W, Luo W, Wu F, Peng X, Zhang Y, Zhang M, Zhao Y, Su N, Qi Y, Chen L, Zhang Y, Wen B, He F, Xu P, (2016) "Deep Coverage Proteomics Identifies More Low-Abundance Missing Proteins in Human Testis Tissue with Q-Exactive HF Mass Spectrometer." <i>J Proteome Res</i> <b>15</b>(11):3988–3997; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27535590 27535590]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00390 10.1021/acs.jproteome.6b00390]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27535590 150]. | #Wei W, Luo W, Wu F, Peng X, Zhang Y, Zhang M, Zhao Y, Su N, Qi Y, Chen L, Zhang Y, Wen B, He F, Xu P, (2016) "Deep Coverage Proteomics Identifies More Low-Abundance Missing Proteins in Human Testis Tissue with Q-Exactive HF Mass Spectrometer." <i>J Proteome Res</i> <b>15</b>(11):3988–3997; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27535590 27535590]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00390 10.1021/acs.jproteome.6b00390]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27535590 150]. | ||
#Dobó J, Szakács D, Oroszlán G, Kortvely E, Kiss B, Boros E, Szász R, Závodszky P, Gál P, Pál G, (2016) "MASP-3 is the exclusive pro-factor D activator in resting blood: the lectin and the alternative complement pathways are fundamentally linked." <i>Sci Rep</i> <b>6</b>:31877; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27535802 27535802]; doi: [https://dx.doi.org/10.1038/srep31877 10.1038/srep31877]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27535802 6]. | #Dobó J, Szakács D, Oroszlán G, Kortvely E, Kiss B, Boros E, Szász R, Závodszky P, Gál P, Pál G, (2016) "MASP-3 is the exclusive pro-factor D activator in resting blood: the lectin and the alternative complement pathways are fundamentally linked." <i>Sci Rep</i> <b>6</b>:31877; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27535802 27535802]; doi: [https://dx.doi.org/10.1038/srep31877 10.1038/srep31877]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27535802 6]. | ||
- | #Zhang P, Karani R, Turner RL, Dufresne C, Ferri S, Van Eyk JE, Semba RD, (2016) "The proteome of normal human retrobulbar optic nerve and sclera." <i>Proteomics</i> <b>16</b>(19):2592–2596; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27538499 27538499]; doi: [https://dx.doi.org/10.1002/pmic.201600229 10.1002/pmic.201600229]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27538499 | + | #Zhang P, Karani R, Turner RL, Dufresne C, Ferri S, Van Eyk JE, Semba RD, (2016) "The proteome of normal human retrobulbar optic nerve and sclera." <i>Proteomics</i> <b>16</b>(19):2592–2596; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27538499 27538499]; doi: [https://dx.doi.org/10.1002/pmic.201600229 10.1002/pmic.201600229]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27538499 65]. |
#Walley JW, Sartor RC, Shen Z, Schmitz RJ, Wu KJ, Urich MA, Nery JR, Smith LG, Schnable JC, Ecker JR, Briggs SP, (2016) "Integration of omic networks in a developmental atlas of maize." <i>Science</i> <b>353</b>(6301):814–8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27540173 27540173]; doi: [https://dx.doi.org/10.1126/science.aag1125 10.1126/science.aag1125]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27540173 10350]. | #Walley JW, Sartor RC, Shen Z, Schmitz RJ, Wu KJ, Urich MA, Nery JR, Smith LG, Schnable JC, Ecker JR, Briggs SP, (2016) "Integration of omic networks in a developmental atlas of maize." <i>Science</i> <b>353</b>(6301):814–8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27540173 27540173]; doi: [https://dx.doi.org/10.1126/science.aag1125 10.1126/science.aag1125]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27540173 10350]. | ||
#Xie Y, Wang J, Zhang Y, Liu X, Wang X, Liu K, Huang X, Wang Y, (2016) "Quantitative profiling of spreading-coupled protein tyrosine phosphorylation in migratory cells." <i>Sci Rep</i> <b>6</b>:31811; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27554326 27554326]; doi: [https://dx.doi.org/10.1038/srep31811 10.1038/srep31811]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27554326 6]. | #Xie Y, Wang J, Zhang Y, Liu X, Wang X, Liu K, Huang X, Wang Y, (2016) "Quantitative profiling of spreading-coupled protein tyrosine phosphorylation in migratory cells." <i>Sci Rep</i> <b>6</b>:31811; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27554326 27554326]; doi: [https://dx.doi.org/10.1038/srep31811 10.1038/srep31811]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27554326 6]. | ||
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#Kliza K, Taumer C, Pinzuti I, Franz-Wachtel M, Kunzelmann S, Stieglitz B, Macek B, Husnjak K, (2017) "Internally tagged ubiquitin: a tool to identify linear polyubiquitin-modified proteins by mass spectrometry." <i>Nat Methods</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28319114 28319114]; doi: [https://dx.doi.org/10.1038/nmeth.4228 10.1038/nmeth.4228]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28319114 32]. | #Kliza K, Taumer C, Pinzuti I, Franz-Wachtel M, Kunzelmann S, Stieglitz B, Macek B, Husnjak K, (2017) "Internally tagged ubiquitin: a tool to identify linear polyubiquitin-modified proteins by mass spectrometry." <i>Nat Methods</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28319114 28319114]; doi: [https://dx.doi.org/10.1038/nmeth.4228 10.1038/nmeth.4228]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28319114 32]. | ||
#Khodadoust MS, Olsson N, Wagar LE, Haabeth OA, Chen B, Swaminathan K, Rawson K, Liu CL, Steiner D, Lund P, Rao S, Zhang L, Marceau C, Stehr H, Newman AM, Czerwinski DK, Carlton VE, Moorhead M, Faham M, Kohrt HE, Carette J, Green MR, Davis MM, Levy R, Elias JE, Alizadeh AA, (2017) "Antigen presentation profiling reveals recognition of lymphoma immunoglobulin neoantigens." <i>Nature</i> <b>543</b>(7647):723–727; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28329770 28329770]; doi: [https://dx.doi.org/10.1038/nature21433 10.1038/nature21433]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28329770 147]. | #Khodadoust MS, Olsson N, Wagar LE, Haabeth OA, Chen B, Swaminathan K, Rawson K, Liu CL, Steiner D, Lund P, Rao S, Zhang L, Marceau C, Stehr H, Newman AM, Czerwinski DK, Carlton VE, Moorhead M, Faham M, Kohrt HE, Carette J, Green MR, Davis MM, Levy R, Elias JE, Alizadeh AA, (2017) "Antigen presentation profiling reveals recognition of lymphoma immunoglobulin neoantigens." <i>Nature</i> <b>543</b>(7647):723–727; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28329770 28329770]; doi: [https://dx.doi.org/10.1038/nature21433 10.1038/nature21433]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28329770 147]. | ||
+ | #Yadav L, Tamene F, Göös H, van Drogen A, Katainen R, Aebersold R, Gstaiger M, Varjosalo M, (2017) "Systematic Analysis of Human Protein Phosphatase Interactions and Dynamics." <i>Cell Syst</i> <b>4</b>(4):430–444.e5; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28330616 28330616]; doi: [https://dx.doi.org/10.1016/j.cels.2017.02.011 10.1016/j.cels.2017.02.011]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28330616 512]. | ||
#Zhang X, Maity T, Kashyap MK, Bansal M, Venugopalan A, Singh S, Awasthi S, Marimuthu A, Jacob HK, Belkina N, Pitts S, Cultraro CM, Gao S, Kirkali F, Biswas R, Chaerkady R, Califano A, Pandey A, Guha U, (2017) "Quantitative tyrosine phosphoproteomics of EGFR tyrosine kinase inhibitor-treated lung adenocarcinoma cells reveals potential novel biomarkers of therapeutic response." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28331001 28331001]; doi: [https://dx.doi.org/10.1074/mcp.M117.067439 10.1074/mcp.M117.067439]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28331001 41]. | #Zhang X, Maity T, Kashyap MK, Bansal M, Venugopalan A, Singh S, Awasthi S, Marimuthu A, Jacob HK, Belkina N, Pitts S, Cultraro CM, Gao S, Kirkali F, Biswas R, Chaerkady R, Califano A, Pandey A, Guha U, (2017) "Quantitative tyrosine phosphoproteomics of EGFR tyrosine kinase inhibitor-treated lung adenocarcinoma cells reveals potential novel biomarkers of therapeutic response." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28331001 28331001]; doi: [https://dx.doi.org/10.1074/mcp.M117.067439 10.1074/mcp.M117.067439]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28331001 41]. | ||
#Nathan A, Reinhardt P, Kruspe D, Jörß T, Groth M, Nolte H, Habenicht A, Herrmann J, Holschbach V, Toth B, Krüger M, Wang ZQ, Platzer M, Englert C, (2017) "The Wilms tumor protein Wt1 contributes to female fertility by regulating oviductal proteostasis." <i>Hum Mol Genet</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28334862 28334862]; doi: [https://dx.doi.org/10.1093/hmg/ddx075 10.1093/hmg/ddx075]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28334862 48]. | #Nathan A, Reinhardt P, Kruspe D, Jörß T, Groth M, Nolte H, Habenicht A, Herrmann J, Holschbach V, Toth B, Krüger M, Wang ZQ, Platzer M, Englert C, (2017) "The Wilms tumor protein Wt1 contributes to female fertility by regulating oviductal proteostasis." <i>Hum Mol Genet</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28334862 28334862]; doi: [https://dx.doi.org/10.1093/hmg/ddx075 10.1093/hmg/ddx075]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28334862 48]. | ||
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#Cuijpers SAG, Willemstein E, Vertegaal ACO, (2017) "<b>Converging SUMO and ubiquitin signaling: improved methodology identifies co-modified target proteins</b>." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28951443 28951443]; doi: [https://dx.doi.org/10.1074/mcp.TIR117.000152 10.1074/mcp.TIR117.000152]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28951443 102]. | #Cuijpers SAG, Willemstein E, Vertegaal ACO, (2017) "<b>Converging SUMO and ubiquitin signaling: improved methodology identifies co-modified target proteins</b>." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28951443 28951443]; doi: [https://dx.doi.org/10.1074/mcp.TIR117.000152 10.1074/mcp.TIR117.000152]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28951443 102]. | ||
#Seddigh P, Bracht T, Molinier-Frenkel V, Castellano F, Kniemeyer O, Schuster M, Weski J, Hasenberg A, Kraus A, Poschet G, Hager T, Theegarte D, Opitz C, Brakhage AA, Sitek B, Hasenberg M, Gunzer M, (2017) "Quantitative Analysis of Proteome Modulations in Alveolar Epithelial Type II Cells in Response to Pulmonary <i>Aspergillus fumigatus</i> Infection." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28951444 28951444]; doi: [https://dx.doi.org/10.1074/mcp.RA117.000072 10.1074/mcp.RA117.000072]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28951444 18]. | #Seddigh P, Bracht T, Molinier-Frenkel V, Castellano F, Kniemeyer O, Schuster M, Weski J, Hasenberg A, Kraus A, Poschet G, Hager T, Theegarte D, Opitz C, Brakhage AA, Sitek B, Hasenberg M, Gunzer M, (2017) "Quantitative Analysis of Proteome Modulations in Alveolar Epithelial Type II Cells in Response to Pulmonary <i>Aspergillus fumigatus</i> Infection." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28951444 28951444]; doi: [https://dx.doi.org/10.1074/mcp.RA117.000072 10.1074/mcp.RA117.000072]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28951444 18]. | ||
+ | #Yin X, Salemi MR, Phinney BS, Gotcheva V, Angelov A, Marco ML, (2017) "Proteomes of <i>Lactobacillus delbrueckii</i> subsp. <i>bulgaricus</i> LBB.B5 Incubated in Milk at Optimal and Low Temperatures." <i>mSystems</i> <b>2</b>(5):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28951887 28951887]; doi: [https://dx.doi.org/10.1128/mSystems.00027-17 10.1128/mSystems.00027-17]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28951887 27]. | ||
#Wang Q, Lu Q, (2017) "Plasma membrane-derived extracellular microvesicles mediate non-canonical intercellular NOTCH signaling." <i>Nat Commun</i> <b>8</b>(1):709; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28955033 28955033]; doi: [https://dx.doi.org/10.1038/s41467-017-00767-2 10.1038/s41467-017-00767-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28955033 2]. | #Wang Q, Lu Q, (2017) "Plasma membrane-derived extracellular microvesicles mediate non-canonical intercellular NOTCH signaling." <i>Nat Commun</i> <b>8</b>(1):709; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28955033 28955033]; doi: [https://dx.doi.org/10.1038/s41467-017-00767-2 10.1038/s41467-017-00767-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28955033 2]. | ||
#Triana S, de Cock H, Ohm RA, Danies G, Wösten HAB, Restrepo S, González Barrios AF, Celis A, (2017) "Lipid Metabolic Versatility in <i>Malassezia</i> spp. Yeasts Studied through Metabolic Modeling." <i>Front Microbiol</i> <b>8</b>:1772; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28959251 28959251]; doi: [https://dx.doi.org/10.3389/fmicb.2017.01772 10.3389/fmicb.2017.01772]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28959251 37]. | #Triana S, de Cock H, Ohm RA, Danies G, Wösten HAB, Restrepo S, González Barrios AF, Celis A, (2017) "Lipid Metabolic Versatility in <i>Malassezia</i> spp. Yeasts Studied through Metabolic Modeling." <i>Front Microbiol</i> <b>8</b>:1772; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28959251 28959251]; doi: [https://dx.doi.org/10.3389/fmicb.2017.01772 10.3389/fmicb.2017.01772]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28959251 37]. | ||
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#Zhan Y, Marchand CH, Maes A, Mauries A, Sun Y, Dhaliwal JS, Uniacke J, Arragain S, Jiang H, Gold ND, Martin VJJ, Lemaire SD, Zerges W, (2018) "Pyrenoid functions revealed by proteomics in Chlamydomonas reinhardtii." <i>PLoS One</i> <b>13</b>(2):e0185039; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29481573 29481573]; doi: [https://dx.doi.org/10.1371/journal.pone.0185039 10.1371/journal.pone.0185039]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29481573 16]. | #Zhan Y, Marchand CH, Maes A, Mauries A, Sun Y, Dhaliwal JS, Uniacke J, Arragain S, Jiang H, Gold ND, Martin VJJ, Lemaire SD, Zerges W, (2018) "Pyrenoid functions revealed by proteomics in Chlamydomonas reinhardtii." <i>PLoS One</i> <b>13</b>(2):e0185039; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29481573 29481573]; doi: [https://dx.doi.org/10.1371/journal.pone.0185039 10.1371/journal.pone.0185039]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29481573 16]. | ||
#Zeiner PS, Zinke J, Kowalewski DJ, Bernatz S, Tichy J, Ronellenfitsch MW, Thorsen F, Berger A, Forster MT, Muller A, Steinbach JP, Beschorner R, Wischhusen J, Kvasnicka HM, Plate KH, Stefanović S, Weide B, Mittelbronn M, Harter PN, (2018) "CD74 regulates complexity of tumor cell HLA class II peptidome in brain metastasis and is a positive prognostic marker for patient survival." <i>Acta Neuropathol Commun</i> <b>6</b>(1):18; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29490700 29490700]; doi: [https://dx.doi.org/10.1186/s40478-018-0521-5 10.1186/s40478-018-0521-5]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29490700 20]. | #Zeiner PS, Zinke J, Kowalewski DJ, Bernatz S, Tichy J, Ronellenfitsch MW, Thorsen F, Berger A, Forster MT, Muller A, Steinbach JP, Beschorner R, Wischhusen J, Kvasnicka HM, Plate KH, Stefanović S, Weide B, Mittelbronn M, Harter PN, (2018) "CD74 regulates complexity of tumor cell HLA class II peptidome in brain metastasis and is a positive prognostic marker for patient survival." <i>Acta Neuropathol Commun</i> <b>6</b>(1):18; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29490700 29490700]; doi: [https://dx.doi.org/10.1186/s40478-018-0521-5 10.1186/s40478-018-0521-5]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29490700 20]. | ||
+ | #Marquez J, Fernandez-Piñeiro I, Araúzo-Bravo MJ, Poschmann G, Stühler K, Khatib AM, Sanchez A, Unda F, Ibarretxe G, Bernales I, Badiola I, (2018) "Targeting liver sinusoidal endothelial cells with miR-20a-loaded nanoparticles reduces murine colon cancer metastasis to the liver." <i>Int J Cancer</i> <b>143</b>(3):709–719; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29492958 29492958]; doi: [https://dx.doi.org/10.1002/ijc.31343 10.1002/ijc.31343]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29492958 39]. | ||
#Olsson N, Schultz LM, Zhang L, Khodadoust MS, Narayan R, Czerwinski DK, Levy R, Elias JE, (2018) "T-cell immunopeptidomes reveal cell subtype surface markers derived from intracellular proteins." <i>Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29493099 29493099]; doi: [https://dx.doi.org/10.1002/pmic.201700410 10.1002/pmic.201700410]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29493099 30]. | #Olsson N, Schultz LM, Zhang L, Khodadoust MS, Narayan R, Czerwinski DK, Levy R, Elias JE, (2018) "T-cell immunopeptidomes reveal cell subtype surface markers derived from intracellular proteins." <i>Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29493099 29493099]; doi: [https://dx.doi.org/10.1002/pmic.201700410 10.1002/pmic.201700410]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29493099 30]. | ||
#Goel RK, Paczkowska M, Reimand J, Napper S, Lukong KE, (2018) "Phosphoproteomics analysis identifies novel candidate substrates of the non-receptor tyrosine kinase, SRMS." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29496907 29496907]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000643 10.1074/mcp.RA118.000643]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29496907 4]. | #Goel RK, Paczkowska M, Reimand J, Napper S, Lukong KE, (2018) "Phosphoproteomics analysis identifies novel candidate substrates of the non-receptor tyrosine kinase, SRMS." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29496907 29496907]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000643 10.1074/mcp.RA118.000643]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29496907 4]. | ||
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#Liang P, Zhu W, Lan T, Tao Q, (2018) "Detection of salivary protein biomarkers of saliva secretion disorder in a primary Sjögren syndrome murine model." <i>J Pharm Biomed Anal</i> <b>154</b>:252–262; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29558726 29558726]; doi: [https://dx.doi.org/10.1016/j.jpba.2018.03.023 10.1016/j.jpba.2018.03.023]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29558726 2]. | #Liang P, Zhu W, Lan T, Tao Q, (2018) "Detection of salivary protein biomarkers of saliva secretion disorder in a primary Sjögren syndrome murine model." <i>J Pharm Biomed Anal</i> <b>154</b>:252–262; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29558726 29558726]; doi: [https://dx.doi.org/10.1016/j.jpba.2018.03.023 10.1016/j.jpba.2018.03.023]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29558726 2]. | ||
#Saei AA, Sabatier P, Güler Tokat Ü, Chernobrovkin A, Pirmoradian M, Zubarev RA, (2018) "Comparative proteomics of dying and surviving cancer cells improves the identification of drug targets and sheds light on cell life/death decisions." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29572246 29572246]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000610 10.1074/mcp.RA118.000610]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29572246 90]. | #Saei AA, Sabatier P, Güler Tokat Ü, Chernobrovkin A, Pirmoradian M, Zubarev RA, (2018) "Comparative proteomics of dying and surviving cancer cells improves the identification of drug targets and sheds light on cell life/death decisions." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29572246 29572246]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000610 10.1074/mcp.RA118.000610]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29572246 90]. | ||
+ | #Cai Q, Wang ZK, Shao W, Ying SH, Feng MG, (2018) "Essential role of Rpd3-dependent lysine modification in the growth, development and virulence of Beauveria bassiana." <i>Environ Microbiol</i> <b>20</b>(4):1590–1606; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29575704 29575704]; doi: [https://dx.doi.org/10.1111/1462-2920.14100 10.1111/1462-2920.14100]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29575704 5]. | ||
#Zhang C, Leng W, Sun C, Lu T, Chen Z, Men X, Wang Y, Wang G, Zhen B, Qin J, (2018) "Urine Proteome Profiling Predicts Lung Cancer from Control Cases and Other Tumors." <i>EBioMedicine</i> <b>30</b>:120–128; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29576497 29576497]; doi: [https://dx.doi.org/10.1016/j.ebiom.2018.03.009 10.1016/j.ebiom.2018.03.009]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29576497 557]. | #Zhang C, Leng W, Sun C, Lu T, Chen Z, Men X, Wang Y, Wang G, Zhen B, Qin J, (2018) "Urine Proteome Profiling Predicts Lung Cancer from Control Cases and Other Tumors." <i>EBioMedicine</i> <b>30</b>:120–128; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29576497 29576497]; doi: [https://dx.doi.org/10.1016/j.ebiom.2018.03.009 10.1016/j.ebiom.2018.03.009]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29576497 557]. | ||
#Haller C, Chaskar P, Piccand J, Cominetti O, Macron C, Dayon L, Kraus MR, (2018) "Insights into islet differentiation and maturation through proteomic characterization of a human iPSC-derived pancreatic endocrine model." <i>Proteomics Clin Appl</i> <b></b>:e1600173; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29578310 29578310]; doi: [https://dx.doi.org/10.1002/prca.201600173 10.1002/prca.201600173]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29578310 218]. | #Haller C, Chaskar P, Piccand J, Cominetti O, Macron C, Dayon L, Kraus MR, (2018) "Insights into islet differentiation and maturation through proteomic characterization of a human iPSC-derived pancreatic endocrine model." <i>Proteomics Clin Appl</i> <b></b>:e1600173; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29578310 29578310]; doi: [https://dx.doi.org/10.1002/prca.201600173 10.1002/prca.201600173]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29578310 218]. | ||
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#He C, Jia C, Zhang Y, Xu P, (2018) "Enrichment-Based Proteogenomics Identifies Microproteins, Missing Proteins, and Novel smORFs in Saccharomyces cerevisiae." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29897761 29897761]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00032 10.1021/acs.jproteome.8b00032]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29897761 20]. | #He C, Jia C, Zhang Y, Xu P, (2018) "Enrichment-Based Proteogenomics Identifies Microproteins, Missing Proteins, and Novel smORFs in Saccharomyces cerevisiae." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29897761 29897761]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00032 10.1021/acs.jproteome.8b00032]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29897761 20]. | ||
#Adav SS, Wei J, Terence Y, Ang BC, Yip LW, Sze SK, (2018) "Proteomic Analysis of Aqueous Humor from Primary Open Angle Glaucoma Patients on Drug Treatment Revealed Altered Complement Activation Cascade." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29901396 29901396]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00244 10.1021/acs.jproteome.8b00244]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29901396 80]. | #Adav SS, Wei J, Terence Y, Ang BC, Yip LW, Sze SK, (2018) "Proteomic Analysis of Aqueous Humor from Primary Open Angle Glaucoma Patients on Drug Treatment Revealed Altered Complement Activation Cascade." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29901396 29901396]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00244 10.1021/acs.jproteome.8b00244]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29901396 80]. | ||
+ | #Ly T, Endo A, Brenes A, Gierlinski M, Afzal V, Pawellek A, Lamond AI, (2018) "Proteome-wide analysis of protein abundance and turnover remodelling during oncogenic transformation of human breast epithelial cells." <i>Wellcome Open Res</i> <b>3</b>:51; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29904729 29904729]; doi: [https://dx.doi.org/10.12688/wellcomeopenres.14392.1 10.12688/wellcomeopenres.14392.1]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29904729 1953]. | ||
#Steenbeek SC, Pham TV, de Ligt J, Zomer A, Knol JC, Piersma SR, Schelfhorst T, Huisjes R, Schiffelers RM, Cuppen E, Jimenez CR, van Rheenen J, (2018) "Cancer cells copy migratory behavior and exchange signaling networks via extracellular vesicles." <i>EMBO J</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29907695 29907695]; doi: [https://dx.doi.org/10.15252/embj.201798357 10.15252/embj.201798357]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29907695 67]. | #Steenbeek SC, Pham TV, de Ligt J, Zomer A, Knol JC, Piersma SR, Schelfhorst T, Huisjes R, Schiffelers RM, Cuppen E, Jimenez CR, van Rheenen J, (2018) "Cancer cells copy migratory behavior and exchange signaling networks via extracellular vesicles." <i>EMBO J</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29907695 29907695]; doi: [https://dx.doi.org/10.15252/embj.201798357 10.15252/embj.201798357]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29907695 67]. | ||
#Selvan LDN, Danda R, Madugundu AK, Puttamallesh VN, Sathe GJ, Krishnan UM, Khetan V, Rishi P, Prasad TSK, Pandey A, Krishnakumar S, Gowda H, Elchuri SV, (2018) "Phosphoproteomics of Retinoblastoma: A Pilot Study Identifies Aberrant Kinases." <i>Molecules</i> <b>23</b>(6):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29914080 29914080]; doi: [https://dx.doi.org/10.3390/molecules23061454 10.3390/molecules23061454]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29914080 12]. | #Selvan LDN, Danda R, Madugundu AK, Puttamallesh VN, Sathe GJ, Krishnan UM, Khetan V, Rishi P, Prasad TSK, Pandey A, Krishnakumar S, Gowda H, Elchuri SV, (2018) "Phosphoproteomics of Retinoblastoma: A Pilot Study Identifies Aberrant Kinases." <i>Molecules</i> <b>23</b>(6):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29914080 29914080]; doi: [https://dx.doi.org/10.3390/molecules23061454 10.3390/molecules23061454]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29914080 12]. | ||
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#Schiza C, Korbakis D, Panteleli E, Jarvi K, Drabovich AP, Diamandis EP, (2018) "Discovery of a human testis-specific protein complex TEX101-DPEP3 and selection of its disrupting antibodies." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30097533 30097533]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000749 10.1074/mcp.RA118.000749]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30097533 44]. | #Schiza C, Korbakis D, Panteleli E, Jarvi K, Drabovich AP, Diamandis EP, (2018) "Discovery of a human testis-specific protein complex TEX101-DPEP3 and selection of its disrupting antibodies." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30097533 30097533]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000749 10.1074/mcp.RA118.000749]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30097533 44]. | ||
#Hwang H, Jeong JE, Lee HK, Yun KN, An HJ, Lee B, Paik YK, Jeong TS, Yee GT, Kim JY, Yoo JS, (2018) "Identification of Missing Proteins in Human Olfactory Epithelial Tissue by Liquid Chromatography-Tandem Mass Spectrometry." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30113170 30113170]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00408 10.1021/acs.jproteome.8b00408]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30113170 23]. | #Hwang H, Jeong JE, Lee HK, Yun KN, An HJ, Lee B, Paik YK, Jeong TS, Yee GT, Kim JY, Yoo JS, (2018) "Identification of Missing Proteins in Human Olfactory Epithelial Tissue by Liquid Chromatography-Tandem Mass Spectrometry." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30113170 30113170]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00408 10.1021/acs.jproteome.8b00408]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30113170 23]. | ||
+ | #Macron C, Lane L, Núñez Galindo A, Dayon L, (2018) "Deep Dive on the Proteome of Human Cerebrospinal Fluid: A Valuable Data Resource for Biomarker Discovery and Missing Protein Identification." <i>J Proteome Res</i> <b>17</b>(12):4113–4126; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30124047 30124047]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00300 10.1021/acs.jproteome.8b00300]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30124047 24]. | ||
#Simunovic F, Winninger O, Strassburg S, Koch HG, Finkenzeller G, Stark GB, Lampert FM, (2019) "Increased differentiation and production of extracellular matrix components of primary human osteoblasts after cocultivation with endothelial cells: A quantitative proteomics approach." <i>J Cell Biochem</i> <b>120</b>(1):396–404; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30126049 30126049]; doi: [https://dx.doi.org/10.1002/jcb.27394 10.1002/jcb.27394]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30126049 20]. | #Simunovic F, Winninger O, Strassburg S, Koch HG, Finkenzeller G, Stark GB, Lampert FM, (2019) "Increased differentiation and production of extracellular matrix components of primary human osteoblasts after cocultivation with endothelial cells: A quantitative proteomics approach." <i>J Cell Biochem</i> <b>120</b>(1):396–404; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30126049 30126049]; doi: [https://dx.doi.org/10.1002/jcb.27394 10.1002/jcb.27394]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30126049 20]. | ||
#Shen ZQ, Shi B, Wang TR, Jiao J, Shang X, Wu QJ, Zhou YM, Cao TF, Du Q, Wang XX, Li D, (2018) "Characterization of the Sperm Proteome and Reproductive Outcomes with <i>in Vitro</i> Fertilization after a Reduction in Male Ejaculatory Abstinence Period." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30126978 30126978]; doi: [https://dx.doi.org/10.1074/mcp.RA117.000541 10.1074/mcp.RA117.000541]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30126978 18]. | #Shen ZQ, Shi B, Wang TR, Jiao J, Shang X, Wu QJ, Zhou YM, Cao TF, Du Q, Wang XX, Li D, (2018) "Characterization of the Sperm Proteome and Reproductive Outcomes with <i>in Vitro</i> Fertilization after a Reduction in Male Ejaculatory Abstinence Period." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30126978 30126978]; doi: [https://dx.doi.org/10.1074/mcp.RA117.000541 10.1074/mcp.RA117.000541]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30126978 18]. | ||
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#Guneykaya D, Ivanov A, Hernandez DP, Haage V, Wojtas B, Meyer N, Maricos M, Jordan P, Buonfiglioli A, Gielniewski B, Ochocka N, Cömert C, Friedrich C, Artiles LS, Kaminska B, Mertins P, Beule D, Kettenmann H, Wolf SA, (2018) "Transcriptional and Translational Differences of Microglia from Male and Female Brains." <i>Cell Rep</i> <b>24</b>(10):2773–2783.e6; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30184509 30184509]; doi: [https://dx.doi.org/10.1016/j.celrep.2018.08.001 10.1016/j.celrep.2018.08.001]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30184509 8]. | #Guneykaya D, Ivanov A, Hernandez DP, Haage V, Wojtas B, Meyer N, Maricos M, Jordan P, Buonfiglioli A, Gielniewski B, Ochocka N, Cömert C, Friedrich C, Artiles LS, Kaminska B, Mertins P, Beule D, Kettenmann H, Wolf SA, (2018) "Transcriptional and Translational Differences of Microglia from Male and Female Brains." <i>Cell Rep</i> <b>24</b>(10):2773–2783.e6; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30184509 30184509]; doi: [https://dx.doi.org/10.1016/j.celrep.2018.08.001 10.1016/j.celrep.2018.08.001]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30184509 8]. | ||
#Carnielli CM, Macedo CCS, De Rossi T, Granato DC, Rivera C, Domingues RR, Pauletti BA, Yokoo S, Heberle H, Busso-Lopes AF, Cervigne NK, Sawazaki-Calone I, Meirelles GV, Marchi FA, Telles GP, Minghim R, Ribeiro ACP, Brandão TB, de Castro G Jr, González-Arriagada WA, Gomes A, Penteado F, Santos-Silva AR, Lopes MA, Rodrigues PC, Sundquist E, Salo T, da Silva SD, Alaoui-Jamali MA, Graner E, Fox JW, Coletta RD, Paes Leme AF, (2018) "Combining discovery and targeted proteomics reveals a prognostic signature in oral cancer." <i>Nat Commun</i> <b>9</b>(1):3598; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30185791 30185791]; doi: [https://dx.doi.org/10.1038/s41467-018-05696-2 10.1038/s41467-018-05696-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30185791 122]. | #Carnielli CM, Macedo CCS, De Rossi T, Granato DC, Rivera C, Domingues RR, Pauletti BA, Yokoo S, Heberle H, Busso-Lopes AF, Cervigne NK, Sawazaki-Calone I, Meirelles GV, Marchi FA, Telles GP, Minghim R, Ribeiro ACP, Brandão TB, de Castro G Jr, González-Arriagada WA, Gomes A, Penteado F, Santos-Silva AR, Lopes MA, Rodrigues PC, Sundquist E, Salo T, da Silva SD, Alaoui-Jamali MA, Graner E, Fox JW, Coletta RD, Paes Leme AF, (2018) "Combining discovery and targeted proteomics reveals a prognostic signature in oral cancer." <i>Nat Commun</i> <b>9</b>(1):3598; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30185791 30185791]; doi: [https://dx.doi.org/10.1038/s41467-018-05696-2 10.1038/s41467-018-05696-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30185791 122]. | ||
+ | #Barkovits K, Linden A, Galozzi S, Schilde L, Pacharra S, Mollenhauer B, Stoepel N, Steinbach S, May C, Uszkoreit J, Eisenacher M, Marcus K, (2018) "Characterization of Cerebrospinal Fluid via Data-Independent Acquisition Mass Spectrometry." <i>J Proteome Res</i> <b>17</b>(10):3418–3430; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30207155 30207155]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00308 10.1021/acs.jproteome.8b00308]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30207155 44]. | ||
#Abreha MH, Dammer EB, Ping L, Zhang T, Duong DM, Gearing M, Lah JJ, Levey AI, Seyfried NT, (2018) "Quantitative Analysis of the Brain Ubiquitylome in Alzheimer's Disease." <i>Proteomics</i> <b>18</b>(20):e1800108; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30230243 30230243]; doi: [https://dx.doi.org/10.1002/pmic.201800108 10.1002/pmic.201800108]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30230243 29]. | #Abreha MH, Dammer EB, Ping L, Zhang T, Duong DM, Gearing M, Lah JJ, Levey AI, Seyfried NT, (2018) "Quantitative Analysis of the Brain Ubiquitylome in Alzheimer's Disease." <i>Proteomics</i> <b>18</b>(20):e1800108; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30230243 30230243]; doi: [https://dx.doi.org/10.1002/pmic.201800108 10.1002/pmic.201800108]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30230243 29]. | ||
#Finamore F, Reny JL, Malacarne S, Fontana P, Sanchez JC, (2018) "A high glucose level is associated with decreased aspirin-mediated acetylation of platelet cyclooxygenase (COX)-1 at serine 529: A pilot study." <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30240925 30240925]; doi: [https://dx.doi.org/10.1016/j.jprot.2018.09.007 10.1016/j.jprot.2018.09.007]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30240925 18]. | #Finamore F, Reny JL, Malacarne S, Fontana P, Sanchez JC, (2018) "A high glucose level is associated with decreased aspirin-mediated acetylation of platelet cyclooxygenase (COX)-1 at serine 529: A pilot study." <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30240925 30240925]; doi: [https://dx.doi.org/10.1016/j.jprot.2018.09.007 10.1016/j.jprot.2018.09.007]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30240925 18]. | ||
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#Sun J, Shi J, Wang Y, Chen Y, Li Y, Kong D, Chang L, Liu F, Lv Z, Zhou Y, He F, Zhang Y, Xu P, (2018) "Multiproteases Combined with High-pH Reverse-Phase Separation Strategy Verified Fourteen Missing Proteins in Human Testis Tissue." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30280576 30280576]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00397 10.1021/acs.jproteome.8b00397]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30280576 108]. | #Sun J, Shi J, Wang Y, Chen Y, Li Y, Kong D, Chang L, Liu F, Lv Z, Zhou Y, He F, Zhang Y, Xu P, (2018) "Multiproteases Combined with High-pH Reverse-Phase Separation Strategy Verified Fourteen Missing Proteins in Human Testis Tissue." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30280576 30280576]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00397 10.1021/acs.jproteome.8b00397]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30280576 108]. | ||
#Sepil I, Hopkins BR, Dean R, Thézénas ML, Charles PD, Konietzny R, Fischer R, Kessler B, Wigby S, (2018) "Quantitative proteomics identification of seminal fluid proteins in male <i>Drosophila melanogaster</i>." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30287546 30287546]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000831 10.1074/mcp.RA118.000831]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30287546 87]. | #Sepil I, Hopkins BR, Dean R, Thézénas ML, Charles PD, Konietzny R, Fischer R, Kessler B, Wigby S, (2018) "Quantitative proteomics identification of seminal fluid proteins in male <i>Drosophila melanogaster</i>." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30287546 30287546]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000831 10.1074/mcp.RA118.000831]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30287546 87]. | ||
+ | #Szklanna PB, Parsons ME, Wynne K, O'Connor H, Egan K, Allen S, Ní Áinle F, Maguire PB, (2019) "The Platelet Releasate is Altered in Human Pregnancy." <i>Proteomics Clin Appl</i> <b>13</b>(3):e1800162; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30318839 30318839]; doi: [https://dx.doi.org/10.1002/prca.201800162 10.1002/prca.201800162]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30318839 31]. | ||
#Erdmann J, Preusse M, Khaledi A, Pich A, Häussler S, (2018) "Environment-driven changes of mRNA and protein levels in Pseudomonas aeruginosa." <i>Environ Microbiol</i> <b>20</b>(11):3952–3963; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30346651 30346651]; doi: [https://dx.doi.org/10.1111/1462-2920.14419 10.1111/1462-2920.14419]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30346651 253]. | #Erdmann J, Preusse M, Khaledi A, Pich A, Häussler S, (2018) "Environment-driven changes of mRNA and protein levels in Pseudomonas aeruginosa." <i>Environ Microbiol</i> <b>20</b>(11):3952–3963; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30346651 30346651]; doi: [https://dx.doi.org/10.1111/1462-2920.14419 10.1111/1462-2920.14419]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30346651 253]. | ||
#Krahmer N, Najafi B, Schueder F, Quagliarini F, Steger M, Seitz S, Kasper R, Salinas F, Cox J, Uhlenhaut NH, Walther TC, Jungmann R, Zeigerer A, Borner GHH, Mann M, (2018) "Organellar Proteomics and Phospho-Proteomics Reveal Subcellular Reorganization in Diet-Induced Hepatic Steatosis." <i>Dev Cell</i> <b>47</b>(2):205–221.e7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30352176 30352176]; doi: [https://dx.doi.org/10.1016/j.devcel.2018.09.017 10.1016/j.devcel.2018.09.017]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30352176 134]. | #Krahmer N, Najafi B, Schueder F, Quagliarini F, Steger M, Seitz S, Kasper R, Salinas F, Cox J, Uhlenhaut NH, Walther TC, Jungmann R, Zeigerer A, Borner GHH, Mann M, (2018) "Organellar Proteomics and Phospho-Proteomics Reveal Subcellular Reorganization in Diet-Induced Hepatic Steatosis." <i>Dev Cell</i> <b>47</b>(2):205–221.e7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30352176 30352176]; doi: [https://dx.doi.org/10.1016/j.devcel.2018.09.017 10.1016/j.devcel.2018.09.017]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30352176 134]. | ||
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#Narzt MS, Nagelreiter IM, Oskolkova O, Bochkov VN, Latreille J, Fedorova M, Ni Z, Sialana FJ, Lubec G, Filzwieser M, Laggner M, Bilban M, Mildner M, Tschachler E, Grillari J, Gruber F, (2019) "A novel role for NUPR1 in the keratinocyte stress response to UV oxidized phospholipids." <i>Redox Biol</i> <b>20</b>:467–482; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30466060 30466060]; doi: [https://dx.doi.org/10.1016/j.redox.2018.11.006 10.1016/j.redox.2018.11.006]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30466060 18]. | #Narzt MS, Nagelreiter IM, Oskolkova O, Bochkov VN, Latreille J, Fedorova M, Ni Z, Sialana FJ, Lubec G, Filzwieser M, Laggner M, Bilban M, Mildner M, Tschachler E, Grillari J, Gruber F, (2019) "A novel role for NUPR1 in the keratinocyte stress response to UV oxidized phospholipids." <i>Redox Biol</i> <b>20</b>:467–482; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30466060 30466060]; doi: [https://dx.doi.org/10.1016/j.redox.2018.11.006 10.1016/j.redox.2018.11.006]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30466060 18]. | ||
#Cavanagh JP, Pain M, Askarian F, Bruun JA, Urbarova I, Wai SN, Schmidt F, Johannessen M, (2018) "Comparative exoproteome profiling of an invasive and a commensal Staphylococcus haemolyticus isolate." <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30472255 30472255]; doi: [https://dx.doi.org/10.1016/j.jprot.2018.11.013 10.1016/j.jprot.2018.11.013]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30472255 12]. | #Cavanagh JP, Pain M, Askarian F, Bruun JA, Urbarova I, Wai SN, Schmidt F, Johannessen M, (2018) "Comparative exoproteome profiling of an invasive and a commensal Staphylococcus haemolyticus isolate." <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30472255 30472255]; doi: [https://dx.doi.org/10.1016/j.jprot.2018.11.013 10.1016/j.jprot.2018.11.013]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30472255 12]. | ||
- | #Zhu J, Garrigues L, Van den Toorn H, Stahl B, Heck AJR, (2018) "Discovery and quantification of non-human proteins in human milk." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30489082 30489082]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00550 10.1021/acs.jproteome.8b00550]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30489082 | + | #Zhu J, Garrigues L, Van den Toorn H, Stahl B, Heck AJR, (2018) "Discovery and quantification of non-human proteins in human milk." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30489082 30489082]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00550 10.1021/acs.jproteome.8b00550]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30489082 74]. |
#Back S, Gorman AW, Vogel C, Silva GM, (2018) "Site-specific K63 ubiquitinomics provides insights into translation regulation under stress." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30489083 30489083]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00623 10.1021/acs.jproteome.8b00623]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30489083 20]. | #Back S, Gorman AW, Vogel C, Silva GM, (2018) "Site-specific K63 ubiquitinomics provides insights into translation regulation under stress." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30489083 30489083]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00623 10.1021/acs.jproteome.8b00623]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30489083 20]. | ||
#Novo D, Heath N, Mitchell L, Caligiuri G, MacFarlane A, Reijmer D, Charlton L, Knight J, Calka M, McGhee E, Dornier E, Sumpton D, Mason S, Echard A, Klinkert K, Secklehner J, Kruiswijk F, Vousden K, Macpherson IR, Blyth K, Bailey P, Yin H, Carlin LM, Morton J, Zanivan S, Norman JC, (2018) "Mutant p53s generate pro-invasive niches by influencing exosome podocalyxin levels." <i>Nat Commun</i> <b>9</b>(1):5069; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30498210 30498210]; doi: [https://dx.doi.org/10.1038/s41467-018-07339-y 10.1038/s41467-018-07339-y]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30498210 2]. | #Novo D, Heath N, Mitchell L, Caligiuri G, MacFarlane A, Reijmer D, Charlton L, Knight J, Calka M, McGhee E, Dornier E, Sumpton D, Mason S, Echard A, Klinkert K, Secklehner J, Kruiswijk F, Vousden K, Macpherson IR, Blyth K, Bailey P, Yin H, Carlin LM, Morton J, Zanivan S, Norman JC, (2018) "Mutant p53s generate pro-invasive niches by influencing exosome podocalyxin levels." <i>Nat Commun</i> <b>9</b>(1):5069; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30498210 30498210]; doi: [https://dx.doi.org/10.1038/s41467-018-07339-y 10.1038/s41467-018-07339-y]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30498210 2]. | ||
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#Yelamanchi SD, Tyagi A, Mohanty V, Dutta P, Korbonits M, Chavan S, Advani J, Madugundu AK, Dey G, Datta KK, Rajyalakshmi M, Sahasrabuddhe NA, Chaturvedi A, Kumar A, Das AA, Ghosh D, Jogdand GM, Nair HH, Saini K, Panchal M, Sarvaiya MA, Mohanraj SS, Sengupta N, Saxena P, Subramani PA, Kumar P, Akkali R, Reshma SV, Santhosh RS, Rastogi S, Kumar S, Ghosh SK, Irlapati VK, Srinivasan A, Radotra BD, Mathur PP, Wong GW, Satishchandra P, Chatterjee A, Gowda H, Bhansali A, Pandey A, Shankar SK, Mahadevan A, Prasad TSK, (2018) "Proteomic Analysis of the Human Anterior Pituitary Gland." <i>OMICS</i> <b>22</b>(12):759–769; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30571610 30571610]; doi: [https://dx.doi.org/10.1089/omi.2018.0160 10.1089/omi.2018.0160]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30571610 3]. | #Yelamanchi SD, Tyagi A, Mohanty V, Dutta P, Korbonits M, Chavan S, Advani J, Madugundu AK, Dey G, Datta KK, Rajyalakshmi M, Sahasrabuddhe NA, Chaturvedi A, Kumar A, Das AA, Ghosh D, Jogdand GM, Nair HH, Saini K, Panchal M, Sarvaiya MA, Mohanraj SS, Sengupta N, Saxena P, Subramani PA, Kumar P, Akkali R, Reshma SV, Santhosh RS, Rastogi S, Kumar S, Ghosh SK, Irlapati VK, Srinivasan A, Radotra BD, Mathur PP, Wong GW, Satishchandra P, Chatterjee A, Gowda H, Bhansali A, Pandey A, Shankar SK, Mahadevan A, Prasad TSK, (2018) "Proteomic Analysis of the Human Anterior Pituitary Gland." <i>OMICS</i> <b>22</b>(12):759–769; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30571610 30571610]; doi: [https://dx.doi.org/10.1089/omi.2018.0160 10.1089/omi.2018.0160]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30571610 3]. | ||
#Nanaware PP, Jurewicz MM, Leszyk J, Shaffer SA, Stern LJ, (2018) "HLA-DO modulates the diversity of the MHC-II self-peptidome." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30573663 30573663]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000956 10.1074/mcp.RA118.000956]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30573663 26]. | #Nanaware PP, Jurewicz MM, Leszyk J, Shaffer SA, Stern LJ, (2018) "HLA-DO modulates the diversity of the MHC-II self-peptidome." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30573663 30573663]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000956 10.1074/mcp.RA118.000956]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30573663 26]. | ||
+ | #Sathe G, Na CH, Renuse S, Madugundu AK, Albert M, Moghekar A, Pandey A, (2019) "Quantitative Proteomic Profiling of Cerebrospinal Fluid to Identify Candidate Biomarkers for Alzheimer's Disease." <i>Proteomics Clin Appl</i> <b>13</b>(4):e1800105; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30578620 30578620]; doi: [https://dx.doi.org/10.1002/prca.201800105 10.1002/prca.201800105]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30578620 48]. | ||
#Aloui C, Barlier C, Claverol S, Fagan J, Awounou D, Tavernier E, Guyotat D, Hamzeh-Cognasse H, Cognasse F, Garraud O, Laradi S, (2019) "Differential protein expression of blood platelet components associated with adverse transfusion reactions." <i>J Proteomics</i> <b>194</b>:25–36; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30590131 30590131]; doi: [https://dx.doi.org/10.1016/j.jprot.2018.12.019 10.1016/j.jprot.2018.12.019]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30590131 48]. | #Aloui C, Barlier C, Claverol S, Fagan J, Awounou D, Tavernier E, Guyotat D, Hamzeh-Cognasse H, Cognasse F, Garraud O, Laradi S, (2019) "Differential protein expression of blood platelet components associated with adverse transfusion reactions." <i>J Proteomics</i> <b>194</b>:25–36; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30590131 30590131]; doi: [https://dx.doi.org/10.1016/j.jprot.2018.12.019 10.1016/j.jprot.2018.12.019]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30590131 48]. | ||
#Zhou Z, Chen Y, Jin M, He J, Guli A, Yan C, Ding S, (2018) "Comprehensive analysis of lysine acetylome reveals a site-specific pattern in rapamycin-induced autophagy." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30592415 30592415]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00533 10.1021/acs.jproteome.8b00533]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30592415 6]. | #Zhou Z, Chen Y, Jin M, He J, Guli A, Yan C, Ding S, (2018) "Comprehensive analysis of lysine acetylome reveals a site-specific pattern in rapamycin-induced autophagy." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30592415 30592415]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00533 10.1021/acs.jproteome.8b00533]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30592415 6]. | ||
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#Yang H, Li Y, Zhao M, Wu F, Wang X, Xiao W, Wang Y, Zhang J, Wang F, Xu F, Zeng WF, Overall CM, He SM, Chi H, Xu P, (2019) "Precision <i>de novo</i> peptide sequencing using mirror proteases of Ac-LysargiNase and trypsin for large-scale proteomics." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30622160 30622160]; doi: [https://dx.doi.org/10.1074/mcp.TIR118.000918 10.1074/mcp.TIR118.000918]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30622160 2]. | #Yang H, Li Y, Zhao M, Wu F, Wang X, Xiao W, Wang Y, Zhang J, Wang F, Xu F, Zeng WF, Overall CM, He SM, Chi H, Xu P, (2019) "Precision <i>de novo</i> peptide sequencing using mirror proteases of Ac-LysargiNase and trypsin for large-scale proteomics." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30622160 30622160]; doi: [https://dx.doi.org/10.1074/mcp.TIR118.000918 10.1074/mcp.TIR118.000918]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30622160 2]. | ||
#Chen D, Ludwig K, Krokhin OV, Spicer V, Yang Z, Shen X, Hummon AB, Sun L, (2019) "Capillary zone electrophoresis-tandem mass spectrometry for large-scale phosphoproteomics with the production of over 11000 phosphopeptides from the colon carcinoma HCT116 cell line." <i>Anal Chem</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30624053 30624053]; doi: [https://dx.doi.org/10.1021/acs.analchem.8b04770 10.1021/acs.analchem.8b04770]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30624053 40]. | #Chen D, Ludwig K, Krokhin OV, Spicer V, Yang Z, Shen X, Hummon AB, Sun L, (2019) "Capillary zone electrophoresis-tandem mass spectrometry for large-scale phosphoproteomics with the production of over 11000 phosphopeptides from the colon carcinoma HCT116 cell line." <i>Anal Chem</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30624053 30624053]; doi: [https://dx.doi.org/10.1021/acs.analchem.8b04770 10.1021/acs.analchem.8b04770]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30624053 40]. | ||
+ | #Gallart-Palau X, Serra A, Hase Y, Tan CF, Chen CP, Kalaria RN, Sze SK, (2019) "Brain-derived and circulating vesicle profiles indicate neurovascular unit dysfunction in early Alzheimer's disease." <i>Brain Pathol</i> <b>29</b>(5):593–605; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30629763 30629763]; doi: [https://dx.doi.org/10.1111/bpa.12699 10.1111/bpa.12699]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30629763 20]. | ||
#Chen Z, Lei C, Wang C, Li N, Srivastava M, Tang M, Zhang H, Choi JM, Jung SY, Qin J, Chen J, (2019) "Global phosphoproteomic analysis reveals ARMC10 as an AMPK substrate that regulates mitochondrial dynamics." <i>Nat Commun</i> <b>10</b>(1):104; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30631047 30631047]; doi: [https://dx.doi.org/10.1038/s41467-018-08004-0 10.1038/s41467-018-08004-0]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30631047 30]. | #Chen Z, Lei C, Wang C, Li N, Srivastava M, Tang M, Zhang H, Choi JM, Jung SY, Qin J, Chen J, (2019) "Global phosphoproteomic analysis reveals ARMC10 as an AMPK substrate that regulates mitochondrial dynamics." <i>Nat Commun</i> <b>10</b>(1):104; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30631047 30631047]; doi: [https://dx.doi.org/10.1038/s41467-018-08004-0 10.1038/s41467-018-08004-0]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30631047 30]. | ||
#Hansen M, Peltier J, Killy B, Amin B, Bodendorfer B, Härtlova A, Uebel S, Bosmann M, Hofmann J, Büttner C, Ekici AB, Kuttke M, Franzyk H, Foged C, Beer-Hammer S, Schabbauer G, Trost M, Lang R, (2019) "Macrophage phosphoproteome analysis reveals MINCLE-dependent and -independent mycobacterial cord factor signaling." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30635358 30635358]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000929 10.1074/mcp.RA118.000929]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30635358 72]. | #Hansen M, Peltier J, Killy B, Amin B, Bodendorfer B, Härtlova A, Uebel S, Bosmann M, Hofmann J, Büttner C, Ekici AB, Kuttke M, Franzyk H, Foged C, Beer-Hammer S, Schabbauer G, Trost M, Lang R, (2019) "Macrophage phosphoproteome analysis reveals MINCLE-dependent and -independent mycobacterial cord factor signaling." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30635358 30635358]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000929 10.1074/mcp.RA118.000929]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30635358 72]. | ||
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#Hurcombe JA, Hartley P, Lay AC, Ni L, Bedford JJ, Leader JP, Singh S, Murphy A, Scudamore CL, Marquez E, Barrington AF, Pinto V, Marchetti M, Wong LF, Uney J, Saleem MA, Mathieson PW, Patel S, Walker RJ, Woodgett JR, Quaggin SE, Welsh GI, Coward RJM, (2019) "Podocyte GSK3 is an evolutionarily conserved critical regulator of kidney function." <i>Nat Commun</i> <b>10</b>(1):403; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30679422 30679422]; doi: [https://dx.doi.org/10.1038/s41467-018-08235-1 10.1038/s41467-018-08235-1]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30679422 1]. | #Hurcombe JA, Hartley P, Lay AC, Ni L, Bedford JJ, Leader JP, Singh S, Murphy A, Scudamore CL, Marquez E, Barrington AF, Pinto V, Marchetti M, Wong LF, Uney J, Saleem MA, Mathieson PW, Patel S, Walker RJ, Woodgett JR, Quaggin SE, Welsh GI, Coward RJM, (2019) "Podocyte GSK3 is an evolutionarily conserved critical regulator of kidney function." <i>Nat Commun</i> <b>10</b>(1):403; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30679422 30679422]; doi: [https://dx.doi.org/10.1038/s41467-018-08235-1 10.1038/s41467-018-08235-1]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30679422 1]. | ||
#Fornecker LM, Muller L, Bertrand F, Paul N, Pichot A, Herbrecht R, Chenard MP, Mauvieux L, Vallat L, Bahram S, Cianférani S, Carapito R, Carapito C, (2019) "Multi-omics dataset to decipher the complexity of drug resistance in diffuse large B-cell lymphoma." <i>Sci Rep</i> <b>9</b>(1):895; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30696890 30696890]; doi: [https://dx.doi.org/10.1038/s41598-018-37273-4 10.1038/s41598-018-37273-4]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30696890 20]. | #Fornecker LM, Muller L, Bertrand F, Paul N, Pichot A, Herbrecht R, Chenard MP, Mauvieux L, Vallat L, Bahram S, Cianférani S, Carapito R, Carapito C, (2019) "Multi-omics dataset to decipher the complexity of drug resistance in diffuse large B-cell lymphoma." <i>Sci Rep</i> <b>9</b>(1):895; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30696890 30696890]; doi: [https://dx.doi.org/10.1038/s41598-018-37273-4 10.1038/s41598-018-37273-4]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30696890 20]. | ||
+ | #Dayon L, Cominetti O, Wojcik J, Galindo AN, Oikonomidi A, Henry H, Migliavacca E, Kussmann M, Bowman GL, Popp J, (2019) "Proteomes of Paired Human Cerebrospinal Fluid and Plasma: Relation to Blood-Brain Barrier Permeability in Older Adults." <i>J Proteome Res</i> <b>18</b>(3):1162–1174; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30702894 30702894]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00809 10.1021/acs.jproteome.8b00809]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30702894 128]. | ||
#McKetney J, Runde RM, Hebert AS, Salamat S, Roy S, Coon JJ, (2019) "Proteomic Atlas of the Human Brain in Alzheimer's Disease." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30735395 30735395]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00004 10.1021/acs.jproteome.9b00004]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30735395 22]. | #McKetney J, Runde RM, Hebert AS, Salamat S, Roy S, Coon JJ, (2019) "Proteomic Atlas of the Human Brain in Alzheimer's Disease." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30735395 30735395]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00004 10.1021/acs.jproteome.9b00004]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30735395 22]. | ||
#West KL, Byrum SD, Mackintosh SG, Edmondson RD, Taverna SD, Tackett AJ, (2019) "Proteomic characterization of the arsenic response locus in S. cerevisiae." <i>Epigenetics</i> <b>14</b>(2):130–145; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30739529 30739529]; doi: [https://dx.doi.org/10.1080/15592294.2019.1580110 10.1080/15592294.2019.1580110]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30739529 9]. | #West KL, Byrum SD, Mackintosh SG, Edmondson RD, Taverna SD, Tackett AJ, (2019) "Proteomic characterization of the arsenic response locus in S. cerevisiae." <i>Epigenetics</i> <b>14</b>(2):130–145; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30739529 30739529]; doi: [https://dx.doi.org/10.1080/15592294.2019.1580110 10.1080/15592294.2019.1580110]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30739529 9]. | ||
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#Chu F, Mason KE, Anex DS, Jones AD, Hart BR, (2019) "Hair Proteome Variation at Different Body Locations on Genetically Variant Peptide Detection for Protein-Based Human Identification." <i>Sci Rep</i> <b>9</b>(1):7641; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31113963 31113963]; doi: [https://dx.doi.org/10.1038/s41598-019-44007-7 10.1038/s41598-019-44007-7]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31113963 36]. | #Chu F, Mason KE, Anex DS, Jones AD, Hart BR, (2019) "Hair Proteome Variation at Different Body Locations on Genetically Variant Peptide Detection for Protein-Based Human Identification." <i>Sci Rep</i> <b>9</b>(1):7641; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31113963 31113963]; doi: [https://dx.doi.org/10.1038/s41598-019-44007-7 10.1038/s41598-019-44007-7]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31113963 36]. | ||
#Charitou T, Srihari S, Lynn MA, Jarboui MA, Fasterius E, Moldovan M, Shirasawa S, Tsunoda T, Ueffing M, Xie J, Xin J, Wang X, Proud CG, Boldt K, Al-Khalili Szigyarto C, Kolch W, Lynn DJ, (2019) "Transcriptional and metabolic rewiring of colorectal cancer cells expressing the oncogenic KRAS<sup>G13D</sup> mutation." <i>Br J Cancer</i> <b>121</b>(1):37–50; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31133691 31133691]; doi: [https://dx.doi.org/10.1038/s41416-019-0477-7 10.1038/s41416-019-0477-7]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31133691 523]. | #Charitou T, Srihari S, Lynn MA, Jarboui MA, Fasterius E, Moldovan M, Shirasawa S, Tsunoda T, Ueffing M, Xie J, Xin J, Wang X, Proud CG, Boldt K, Al-Khalili Szigyarto C, Kolch W, Lynn DJ, (2019) "Transcriptional and metabolic rewiring of colorectal cancer cells expressing the oncogenic KRAS<sup>G13D</sup> mutation." <i>Br J Cancer</i> <b>121</b>(1):37–50; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31133691 31133691]; doi: [https://dx.doi.org/10.1038/s41416-019-0477-7 10.1038/s41416-019-0477-7]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31133691 523]. | ||
+ | #Chang TT, Cheng JH, Tsai HW, Young KC, Hsieh SY, Ho CH, (2019) "Plasma proteome plus site-specific N-glycoprofiling for hepatobiliary carcinomas." <i>J Pathol Clin Res</i> <b>5</b>(3):199–212; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31136099 31136099]; doi: [https://dx.doi.org/10.1002/cjp2.136 10.1002/cjp2.136]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31136099 315]. | ||
#Sap KA, Guler AT, Bezstarosti K, Bury AE, Juenemann K, Demmers J, Reits E, (2019) "Global Proteome and Ubiquitinome Changes in the Soluble and Insoluble Fractions of Q175 Huntington Mice Brains." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31138642 31138642]; doi: [https://dx.doi.org/10.1074/mcp.RA119.001486 10.1074/mcp.RA119.001486]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31138642 64]. | #Sap KA, Guler AT, Bezstarosti K, Bury AE, Juenemann K, Demmers J, Reits E, (2019) "Global Proteome and Ubiquitinome Changes in the Soluble and Insoluble Fractions of Q175 Huntington Mice Brains." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31138642 31138642]; doi: [https://dx.doi.org/10.1074/mcp.RA119.001486 10.1074/mcp.RA119.001486]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31138642 64]. | ||
#Shraibman B, Barnea E, Kadosh DM, Haimovich Y, Slobodin G, Rosner I, López-Larrea C, Hilf N, Kuttruff S, Song C, Britten C, Castle J, Kreiter S, Frenzel K, Tatagiba M, Tabatabai G, Dietrich PY, Dutoit V, Wick W, Platten M, Winkler F, von Deimling A, Kroep J, Sahuquillo J, Martinez-Ricarte F, Rodon J, Lassen U, Ottensmeier C, van der Burg SH, Thor Straten P, Poulsen HS, Ponsati B, Okada H, Rammensee HG, Sahin U, Singh H, Admon A, (2019) "Identification of Tumor Antigens Among the HLA Peptidomes of Glioblastoma Tumors and Plasma." <i>Mol Cell Proteomics</i> <b>18</b>(6):1255–1268; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31154438 31154438]; doi: [https://dx.doi.org/10.1074/mcp.RA119.001524 10.1074/mcp.RA119.001524]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31154438 75]. | #Shraibman B, Barnea E, Kadosh DM, Haimovich Y, Slobodin G, Rosner I, López-Larrea C, Hilf N, Kuttruff S, Song C, Britten C, Castle J, Kreiter S, Frenzel K, Tatagiba M, Tabatabai G, Dietrich PY, Dutoit V, Wick W, Platten M, Winkler F, von Deimling A, Kroep J, Sahuquillo J, Martinez-Ricarte F, Rodon J, Lassen U, Ottensmeier C, van der Burg SH, Thor Straten P, Poulsen HS, Ponsati B, Okada H, Rammensee HG, Sahin U, Singh H, Admon A, (2019) "Identification of Tumor Antigens Among the HLA Peptidomes of Glioblastoma Tumors and Plasma." <i>Mol Cell Proteomics</i> <b>18</b>(6):1255–1268; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31154438 31154438]; doi: [https://dx.doi.org/10.1074/mcp.RA119.001524 10.1074/mcp.RA119.001524]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31154438 75]. | ||
#Pladevall-Morera D, Munk S, Ingham A, Garribba L, Albers E, Liu Y, Olsen JV, Lopez-Contreras AJ, (2019) "Proteomic characterization of chromosomal common fragile site (CFS)-associated proteins uncovers ATRX as a regulator of CFS stability." <i>Nucleic Acids Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31180492 31180492]; doi: [https://dx.doi.org/10.1093/nar/gkz510 10.1093/nar/gkz510]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31180492 32]. | #Pladevall-Morera D, Munk S, Ingham A, Garribba L, Albers E, Liu Y, Olsen JV, Lopez-Contreras AJ, (2019) "Proteomic characterization of chromosomal common fragile site (CFS)-associated proteins uncovers ATRX as a regulator of CFS stability." <i>Nucleic Acids Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31180492 31180492]; doi: [https://dx.doi.org/10.1093/nar/gkz510 10.1093/nar/gkz510]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31180492 32]. | ||
#Wang Y, Tatham MH, Schmidt-Heck W, Swann C, Singh-Dolt K, Meseguer-Ripolles J, Lucendo-Villarin B, Kunath T, Rudd TR, Smith AJH, Hengstler JG, Godoy P, Hay RT, Hay DC, (2019) "Multiomics Analyses of HNF4α Protein Domain Function during Human Pluripotent Stem Cell Differentiation." <i>iScience</i> <b>16</b>:206–217; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31185456 31185456]; doi: [https://dx.doi.org/10.1016/j.isci.2019.05.028 10.1016/j.isci.2019.05.028]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31185456 96]. | #Wang Y, Tatham MH, Schmidt-Heck W, Swann C, Singh-Dolt K, Meseguer-Ripolles J, Lucendo-Villarin B, Kunath T, Rudd TR, Smith AJH, Hengstler JG, Godoy P, Hay RT, Hay DC, (2019) "Multiomics Analyses of HNF4α Protein Domain Function during Human Pluripotent Stem Cell Differentiation." <i>iScience</i> <b>16</b>:206–217; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31185456 31185456]; doi: [https://dx.doi.org/10.1016/j.isci.2019.05.028 10.1016/j.isci.2019.05.028]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31185456 96]. | ||
+ | # () "" <i></i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/ ]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31196865 147]. | ||
#Ma F, Tremmel DM, Li Z, Lietz CB, Sackett SD, Odorico JS, Li L, (2019) "In-depth quantification of extracellular matrix proteins from human pancreas." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31200599 31200599]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00241 10.1021/acs.jproteome.9b00241]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31200599 30]. | #Ma F, Tremmel DM, Li Z, Lietz CB, Sackett SD, Odorico JS, Li L, (2019) "In-depth quantification of extracellular matrix proteins from human pancreas." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31200599 31200599]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00241 10.1021/acs.jproteome.9b00241]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31200599 30]. | ||
#Mendonça CF, Kuras M, Nogueira FCS, Plá I, Hortobágyi T, Csiba L, Palkovits M, Renner É, Döme P, Marko-Varga G, Domont GB, Rezeli M, (2019) "Proteomic signatures of brain regions affected by tau pathology in early and late stages of Alzheimer's disease." <i>Neurobiol Dis</i> <b>130</b>:104509; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31207390 31207390]; doi: [https://dx.doi.org/10.1016/j.nbd.2019.104509 10.1016/j.nbd.2019.104509]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31207390 367]. | #Mendonça CF, Kuras M, Nogueira FCS, Plá I, Hortobágyi T, Csiba L, Palkovits M, Renner É, Döme P, Marko-Varga G, Domont GB, Rezeli M, (2019) "Proteomic signatures of brain regions affected by tau pathology in early and late stages of Alzheimer's disease." <i>Neurobiol Dis</i> <b>130</b>:104509; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31207390 31207390]; doi: [https://dx.doi.org/10.1016/j.nbd.2019.104509 10.1016/j.nbd.2019.104509]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31207390 367]. | ||
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#Patil S, Rajagopalan P, Patel K, Subbannayya T, Babu N, Mohan SV, Advani J, Sathe G, Bhandi S, Solanki HS, Sidransky D, Chatterjee A, Gowda H, Ferrari M, (2019) "Chronic shisha exposure alters phosphoproteome of oral keratinocytes." <i>J Cell Commun Signal</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31321732 31321732]; doi: [https://dx.doi.org/10.1007/s12079-019-00528-4 10.1007/s12079-019-00528-4]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31321732 6]. | #Patil S, Rajagopalan P, Patel K, Subbannayya T, Babu N, Mohan SV, Advani J, Sathe G, Bhandi S, Solanki HS, Sidransky D, Chatterjee A, Gowda H, Ferrari M, (2019) "Chronic shisha exposure alters phosphoproteome of oral keratinocytes." <i>J Cell Commun Signal</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31321732 31321732]; doi: [https://dx.doi.org/10.1007/s12079-019-00528-4 10.1007/s12079-019-00528-4]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31321732 6]. | ||
#Buser DP, Ritz MF, Moes S, Tostado C, Frank S, Spiess M, Mariani L, Jenö P, Boulay JL, Hutter G, (2019) "Quantitative proteomics reveals reduction of endocytic machinery components in gliomas." <i>EBioMedicine</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31331834 31331834]; doi: [https://dx.doi.org/10.1016/j.ebiom.2019.07.039 10.1016/j.ebiom.2019.07.039]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31331834 51]. | #Buser DP, Ritz MF, Moes S, Tostado C, Frank S, Spiess M, Mariani L, Jenö P, Boulay JL, Hutter G, (2019) "Quantitative proteomics reveals reduction of endocytic machinery components in gliomas." <i>EBioMedicine</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31331834 31331834]; doi: [https://dx.doi.org/10.1016/j.ebiom.2019.07.039 10.1016/j.ebiom.2019.07.039]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31331834 51]. | ||
+ | #Billing AM, Dib SS, Bhagwat AM, da Silva IT, Drummond RD, Hayat S, Al-Mismar R, Ben-Hamidane H, Goswami N, Engholm-Keller K, Larsen MR, Suhre K, Rafii A, Graumann J, (2019) "A Systems-level Characterization of the Differentiation of Human Embryonic Stem Cells into Mesenchymal Stem Cells." <i>Mol Cell Proteomics</i> <b>18</b>(10):1950–1966; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31332097 31332097]; doi: [https://dx.doi.org/10.1074/mcp.RA119.001356 10.1074/mcp.RA119.001356]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31332097 209]. | ||
#Hollin T, De Witte C, Fréville A, Guerrera IC, Chhuon C, Saliou JM, Herbert F, Pierrot C, Khalife J, (2019) "Essential role of GEXP15, a specific Protein Phosphatase type 1 partner, in Plasmodium berghei in asexual erythrocytic proliferation and transmission." <i>PLoS Pathog</i> <b>15</b>(7):e1007973; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31348803 31348803]; doi: [https://dx.doi.org/10.1371/journal.ppat.1007973 10.1371/journal.ppat.1007973]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31348803 58]. | #Hollin T, De Witte C, Fréville A, Guerrera IC, Chhuon C, Saliou JM, Herbert F, Pierrot C, Khalife J, (2019) "Essential role of GEXP15, a specific Protein Phosphatase type 1 partner, in Plasmodium berghei in asexual erythrocytic proliferation and transmission." <i>PLoS Pathog</i> <b>15</b>(7):e1007973; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31348803 31348803]; doi: [https://dx.doi.org/10.1371/journal.ppat.1007973 10.1371/journal.ppat.1007973]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31348803 58]. | ||
+ | #Losada-Barragán M, Umaña-Pérez A, Durães J, Cuervo-Escobar S, Rodríguez-Vega A, Ribeiro-Gomes FL, Berbert LR, Morgado F, Porrozzi R, Mendes-da-Cruz DA, Aquino P, Carvalho PC, Savino W, Sánchez-Gómez M, Padrón G, Cuervo P, (2019) "Thymic Microenvironment Is Modified by Malnutrition and <i>Leishmania infantum</i> Infection." <i>Front Cell Infect Microbiol</i> <b>9</b>:252; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31355153 31355153]; doi: [https://dx.doi.org/10.3389/fcimb.2019.00252 10.3389/fcimb.2019.00252]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31355153 11]. | ||
#Hillier C, Pardo M, Yu L, Bushell E, Sanderson T, Metcalf T, Herd C, Anar B, Rayner JC, Billker O, Choudhary JS, (2019) "Landscape of the Plasmodium Interactome Reveals Both Conserved and Species-Specific Functionality." <i>Cell Rep</i> <b>28</b>(6):1635–1647.e5; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31390575 31390575]; doi: [https://dx.doi.org/10.1016/j.celrep.2019.07.019 10.1016/j.celrep.2019.07.019]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31390575 723]. | #Hillier C, Pardo M, Yu L, Bushell E, Sanderson T, Metcalf T, Herd C, Anar B, Rayner JC, Billker O, Choudhary JS, (2019) "Landscape of the Plasmodium Interactome Reveals Both Conserved and Species-Specific Functionality." <i>Cell Rep</i> <b>28</b>(6):1635–1647.e5; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31390575 31390575]; doi: [https://dx.doi.org/10.1016/j.celrep.2019.07.019 10.1016/j.celrep.2019.07.019]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31390575 723]. | ||
#Stewart PA, Welsh EA, Slebos RJC, Fang B, Izumi V, Chambers M, Zhang G, Cen L, Pettersson F, Zhang Y, Chen Z, Cheng CH, Thapa R, Thompson Z, Fellows KM, Francis JM, Saller JJ, Mesa T, Zhang C, Yoder S, DeNicola GM, Beg AA, Boyle TA, Teer JK, Ann Chen Y, Koomen JM, Eschrich SA, Haura EB, (2019) "Proteogenomic landscape of squamous cell lung cancer." <i>Nat Commun</i> <b>10</b>(1):3578; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31395880 31395880]; doi: [https://dx.doi.org/10.1038/s41467-019-11452-x 10.1038/s41467-019-11452-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31395880 58]. | #Stewart PA, Welsh EA, Slebos RJC, Fang B, Izumi V, Chambers M, Zhang G, Cen L, Pettersson F, Zhang Y, Chen Z, Cheng CH, Thapa R, Thompson Z, Fellows KM, Francis JM, Saller JJ, Mesa T, Zhang C, Yoder S, DeNicola GM, Beg AA, Boyle TA, Teer JK, Ann Chen Y, Koomen JM, Eschrich SA, Haura EB, (2019) "Proteogenomic landscape of squamous cell lung cancer." <i>Nat Commun</i> <b>10</b>(1):3578; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31395880 31395880]; doi: [https://dx.doi.org/10.1038/s41467-019-11452-x 10.1038/s41467-019-11452-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31395880 58]. | ||
#Olson MG, Widner RE, Jorgenson LM, Lawrence A, Lagundzin D, Woods NT, Ouellette SP, Rucks EA, (2019) "Proximity Labeling To Map Host-Pathogen Interactions at the Membrane of a Bacterium-Containing Vacuole in Chlamydia trachomatis-Infected Human Cells." <i>Infect Immun</i> <b>87</b>(11):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31405957 31405957]; doi: [https://dx.doi.org/10.1128/IAI.00537-19 10.1128/IAI.00537-19]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31405957 314]. | #Olson MG, Widner RE, Jorgenson LM, Lawrence A, Lagundzin D, Woods NT, Ouellette SP, Rucks EA, (2019) "Proximity Labeling To Map Host-Pathogen Interactions at the Membrane of a Bacterium-Containing Vacuole in Chlamydia trachomatis-Infected Human Cells." <i>Infect Immun</i> <b>87</b>(11):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31405957 31405957]; doi: [https://dx.doi.org/10.1128/IAI.00537-19 10.1128/IAI.00537-19]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31405957 314]. | ||
+ | #Fotouhi O, Kjellin H, Juhlin CC, Pan Y, Vesterlund M, Ghaderi M, Yousef A, Andersson-Sand H, Kharaziha P, Caramuta S, Kjellman M, Zedenius J, Larsson C, Orre LM, (2019) "Proteomics identifies neddylation as a potential therapy target in small intestinal neuroendocrine tumors." <i>Oncogene</i> <b>38</b>(43):6881–6897; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31406256 31406256]; doi: [https://dx.doi.org/10.1038/s41388-019-0938-8 10.1038/s41388-019-0938-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31406256 1]. | ||
#Brophy RH, Cai L, Duan X, Zhang Q, Townsend RR, Nunley RM, Guilak F, Rai MF, (2019) "Proteomic analysis of synovial fluid identifies periostin as a biomarker for anterior cruciate ligament injury." <i>Osteoarthritis Cartilage</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31430535 31430535]; doi: [https://dx.doi.org/10.1016/j.joca.2019.08.002 10.1016/j.joca.2019.08.002]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31430535 11]. | #Brophy RH, Cai L, Duan X, Zhang Q, Townsend RR, Nunley RM, Guilak F, Rai MF, (2019) "Proteomic analysis of synovial fluid identifies periostin as a biomarker for anterior cruciate ligament injury." <i>Osteoarthritis Cartilage</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31430535 31430535]; doi: [https://dx.doi.org/10.1016/j.joca.2019.08.002 10.1016/j.joca.2019.08.002]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31430535 11]. | ||
#Ong JWJ, Tan KS, Ler SG, Gunaratne J, Choi H, Seet JE, Chow VT, (2019) "Insights into Early Recovery from Influenza Pneumonia by Spatial and Temporal Quantification of Putative Lung Regenerating Cells and by Lung Proteomics." <i>Cells</i> <b>8</b>(9):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31455003 31455003]; doi: [https://dx.doi.org/10.3390/cells8090975 10.3390/cells8090975]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31455003 1]. | #Ong JWJ, Tan KS, Ler SG, Gunaratne J, Choi H, Seet JE, Chow VT, (2019) "Insights into Early Recovery from Influenza Pneumonia by Spatial and Temporal Quantification of Putative Lung Regenerating Cells and by Lung Proteomics." <i>Cells</i> <b>8</b>(9):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31455003 31455003]; doi: [https://dx.doi.org/10.3390/cells8090975 10.3390/cells8090975]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31455003 1]. | ||
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#Al Ahmad A, Paffrath V, Clima R, Busch JF, Rabien A, Kilic E, Villegas S, Timmermann B, Attimonelli M, Jung K, Meierhofer D, (2019) "Papillary Renal Cell Carcinomas Rewire Glutathione Metabolism and Are Deficient in Both Anabolic Glucose Synthesis and Oxidative Phosphorylation." <i>Cancers (Basel)</i> <b>11</b>(9):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31484429 31484429]; doi: [https://dx.doi.org/10.3390/cancers11091298 10.3390/cancers11091298]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31484429 33]. | #Al Ahmad A, Paffrath V, Clima R, Busch JF, Rabien A, Kilic E, Villegas S, Timmermann B, Attimonelli M, Jung K, Meierhofer D, (2019) "Papillary Renal Cell Carcinomas Rewire Glutathione Metabolism and Are Deficient in Both Anabolic Glucose Synthesis and Oxidative Phosphorylation." <i>Cancers (Basel)</i> <b>11</b>(9):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31484429 31484429]; doi: [https://dx.doi.org/10.3390/cancers11091298 10.3390/cancers11091298]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31484429 33]. | ||
#Liebelt F, Jansen NS, Kumar S, Gracheva E, Claessens LA, Verlaan-de Vries M, Willemstein E, Vertegaal ACO, (2019) "The poly-SUMO2/3 protease SENP6 enables assembly of the constitutive centromere-associated network by group deSUMOylation." <i>Nat Commun</i> <b>10</b>(1):3987; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31485003 31485003]; doi: [https://dx.doi.org/10.1038/s41467-019-11773-x 10.1038/s41467-019-11773-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31485003 46]. | #Liebelt F, Jansen NS, Kumar S, Gracheva E, Claessens LA, Verlaan-de Vries M, Willemstein E, Vertegaal ACO, (2019) "The poly-SUMO2/3 protease SENP6 enables assembly of the constitutive centromere-associated network by group deSUMOylation." <i>Nat Commun</i> <b>10</b>(1):3987; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31485003 31485003]; doi: [https://dx.doi.org/10.1038/s41467-019-11773-x 10.1038/s41467-019-11773-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31485003 46]. | ||
+ | #Harel M, Ortenberg R, Varanasi SK, Mangalhara KC, Mardamshina M, Markovits E, Baruch EN, Tripple V, Arama-Chayoth M, Greenberg E, Shenoy A, Ayasun R, Knafo N, Xu S, Anafi L, Yanovich-Arad G, Barnabas GD, Ashkenazi S, Besser MJ, Schachter J, Bosenberg M, Shadel GS, Barshack I, Kaech SM, Markel G, Geiger T, (2019) "Proteomics of Melanoma Response to Immunotherapy Reveals Mitochondrial Dependence." <i>Cell</i> <b>179</b>(1):236–250.e18; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31495571 31495571]; doi: [https://dx.doi.org/10.1016/j.cell.2019.08.012 10.1016/j.cell.2019.08.012]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31495571 27]. | ||
#Sleat DE, Wiseman JA, El-Banna M, Zheng H, Zhao C, Soherwardy A, Moore DF, Lobel P, (2019) "Analysis of brain and cerebrospinal fluid from mouse models of the three major forms of neuronal ceroid lipofuscinosis reveals changes in the lysosomal proteome." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31501224 31501224]; doi: [https://dx.doi.org/10.1074/mcp.RA119.001587 10.1074/mcp.RA119.001587]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31501224 132]. | #Sleat DE, Wiseman JA, El-Banna M, Zheng H, Zhao C, Soherwardy A, Moore DF, Lobel P, (2019) "Analysis of brain and cerebrospinal fluid from mouse models of the three major forms of neuronal ceroid lipofuscinosis reveals changes in the lysosomal proteome." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31501224 31501224]; doi: [https://dx.doi.org/10.1074/mcp.RA119.001587 10.1074/mcp.RA119.001587]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31501224 132]. | ||
#Wilson R, Gundamaraju R, Vemuri R, Angelucci C, Geraghty D, Gueven N, Eri RD, (2019) "Identification of Key Pro-Survival Proteins in Isolated Colonic Goblet Cells of Winnie, a Murine Model of Spontaneous Colitis." <i>Inflamm Bowel Dis</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31504521 31504521]; doi: [https://dx.doi.org/10.1093/ibd/izz179 10.1093/ibd/izz179]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31504521 6]. | #Wilson R, Gundamaraju R, Vemuri R, Angelucci C, Geraghty D, Gueven N, Eri RD, (2019) "Identification of Key Pro-Survival Proteins in Isolated Colonic Goblet Cells of Winnie, a Murine Model of Spontaneous Colitis." <i>Inflamm Bowel Dis</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31504521 31504521]; doi: [https://dx.doi.org/10.1093/ibd/izz179 10.1093/ibd/izz179]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31504521 6]. | ||
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#Lim MY, Paulo JA, Gygi SP, (2019) "Evaluating False Transfer Rates from the Match-between-Runs Algorithm with a Two-Proteome Model." <i>J Proteome Res</i> <b>18</b>(11):4020–4026; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31547658 31547658]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00492 10.1021/acs.jproteome.9b00492]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31547658 40]. | #Lim MY, Paulo JA, Gygi SP, (2019) "Evaluating False Transfer Rates from the Match-between-Runs Algorithm with a Two-Proteome Model." <i>J Proteome Res</i> <b>18</b>(11):4020–4026; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31547658 31547658]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00492 10.1021/acs.jproteome.9b00492]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31547658 40]. | ||
#Uckeley ZM, Moeller R, Kühn LI, Nilsson E, Robens C, Lasswitz L, Lindqvist R, Lenman A, Passos V, Voss Y, Sommerauer C, Kampmann M, Goffinet C, Meissner F, Överby AK, Lozach PY, Gerold G, (2019) "Quantitative proteomics of Uukuniemi virus - host cell interactions reveals GBF1 as proviral host factor for phleboviruses." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31570497 31570497]; doi: [https://dx.doi.org/10.1074/mcp.RA119.001631 10.1074/mcp.RA119.001631]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31570497 20]. | #Uckeley ZM, Moeller R, Kühn LI, Nilsson E, Robens C, Lasswitz L, Lindqvist R, Lenman A, Passos V, Voss Y, Sommerauer C, Kampmann M, Goffinet C, Meissner F, Överby AK, Lozach PY, Gerold G, (2019) "Quantitative proteomics of Uukuniemi virus - host cell interactions reveals GBF1 as proviral host factor for phleboviruses." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31570497 31570497]; doi: [https://dx.doi.org/10.1074/mcp.RA119.001631 10.1074/mcp.RA119.001631]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31570497 20]. | ||
+ | #Simonetti B, Paul B, Chaudhari K, Weeratunga S, Steinberg F, Gorla M, Heesom KJ, Bashaw GJ, Collins BM, Cullen PJ, (2019) "Molecular identification of a BAR domain-containing coat complex for endosomal recycling of transmembrane proteins." <i>Nat Cell Biol</i> <b>21</b>(10):1219–1233; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31576058 31576058]; doi: [https://dx.doi.org/10.1038/s41556-019-0393-3 10.1038/s41556-019-0393-3]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31576058 2]. | ||
#Kawahara R, Recuero S, Nogueira FCS, Domont GB, Leite KRM, Srougi M, Thaysen-Andersen M, Palmisano G, (2019) "Tissue Proteome Signatures Associated with Five Grades of Prostate Cancer and Benign Prostatic Hyperplasia." <i>Proteomics</i> <b></b>:e1900174; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31576646 31576646]; doi: [https://dx.doi.org/10.1002/pmic.201900174 10.1002/pmic.201900174]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31576646 5]. | #Kawahara R, Recuero S, Nogueira FCS, Domont GB, Leite KRM, Srougi M, Thaysen-Andersen M, Palmisano G, (2019) "Tissue Proteome Signatures Associated with Five Grades of Prostate Cancer and Benign Prostatic Hyperplasia." <i>Proteomics</i> <b></b>:e1900174; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31576646 31576646]; doi: [https://dx.doi.org/10.1002/pmic.201900174 10.1002/pmic.201900174]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31576646 5]. | ||
#Baers LL, Breckels LM, Mills LA, Gatto L, Deery M, Stevens TJ, Howe CJ, Lilley KS, Lea-Smith DJ, (2019) "Proteome mapping of a cyanobacterium reveals distinct compartment organisation and cell-dispersed metabolism." <i>Plant Physiol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31578229 31578229]; doi: [https://dx.doi.org/10.1104/pp.19.00897 10.1104/pp.19.00897]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31578229 39]. | #Baers LL, Breckels LM, Mills LA, Gatto L, Deery M, Stevens TJ, Howe CJ, Lilley KS, Lea-Smith DJ, (2019) "Proteome mapping of a cyanobacterium reveals distinct compartment organisation and cell-dispersed metabolism." <i>Plant Physiol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31578229 31578229]; doi: [https://dx.doi.org/10.1104/pp.19.00897 10.1104/pp.19.00897]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31578229 39]. | ||
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#Deshmukh AS, Peijs L, Beaudry JL, Jespersen NZ, Nielsen CH, Ma T, Brunner AD, Larsen TJ, Bayarri-Olmos R, Prabhakar BS, Helgstrand C, Severinsen MCK, Holst B, Kjaer A, Tang-Christensen M, Sanfridson A, Garred P, Privé GG, Pedersen BK, Gerhart-Hines Z, Nielsen S, Drucker DJ, Mann M, Scheele C, (2019) "Proteomics-Based Comparative Mapping of the Secretomes of Human Brown and White Adipocytes Reveals EPDR1 as a Novel Batokine." <i>Cell Metab</i> <b>30</b>(5):963–975.e7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31668873 31668873]; doi: [https://dx.doi.org/10.1016/j.cmet.2019.10.001 10.1016/j.cmet.2019.10.001]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31668873 28]. | #Deshmukh AS, Peijs L, Beaudry JL, Jespersen NZ, Nielsen CH, Ma T, Brunner AD, Larsen TJ, Bayarri-Olmos R, Prabhakar BS, Helgstrand C, Severinsen MCK, Holst B, Kjaer A, Tang-Christensen M, Sanfridson A, Garred P, Privé GG, Pedersen BK, Gerhart-Hines Z, Nielsen S, Drucker DJ, Mann M, Scheele C, (2019) "Proteomics-Based Comparative Mapping of the Secretomes of Human Brown and White Adipocytes Reveals EPDR1 as a Novel Batokine." <i>Cell Metab</i> <b>30</b>(5):963–975.e7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31668873 31668873]; doi: [https://dx.doi.org/10.1016/j.cmet.2019.10.001 10.1016/j.cmet.2019.10.001]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31668873 28]. | ||
#Alvarez Hayes J, Surmann K, Lamberti Y, Depke M, Dhople V, Blancá B, Ruiz E, Vecerek B, Schmidt F, Völker U, Rodriguez ME, (2020) "Hfq modulates global protein pattern and stress response in Bordetella pertussis." <i>J Proteomics</i> <b>211</b>:103559; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31669358 31669358]; doi: [https://dx.doi.org/10.1016/j.jprot.2019.103559 10.1016/j.jprot.2019.103559]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31669358 16]. | #Alvarez Hayes J, Surmann K, Lamberti Y, Depke M, Dhople V, Blancá B, Ruiz E, Vecerek B, Schmidt F, Völker U, Rodriguez ME, (2020) "Hfq modulates global protein pattern and stress response in Bordetella pertussis." <i>J Proteomics</i> <b>211</b>:103559; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31669358 31669358]; doi: [https://dx.doi.org/10.1016/j.jprot.2019.103559 10.1016/j.jprot.2019.103559]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31669358 16]. | ||
+ | #Walker C, Ryu S, Giannone RJ, Garcia S, Trinh CT, (2020) "Understanding and Eliminating the Detrimental Effect of Thiamine Deficiency on the Oleaginous Yeast Yarrowia lipolytica." <i>Appl Environ Microbiol</i> <b>86</b>(3):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31704686 31704686]; doi: [https://dx.doi.org/10.1128/AEM.02299-19 10.1128/AEM.02299-19]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31704686 16]. | ||
#Sohier P, Sanson R, Leduc M, Audebourg A, Broussard C, Salnot V, Just PA, Pasmant E, Mayeux P, Guillonneau F, Romagnolo B, Perret C, Terris B, (2019) "Proteome analysis of formalin-fixed paraffin-embedded colorectal adenomas reveals the heterogeneous nature of traditional serrated adenomas compared to other colorectal adenomas." <i>J Pathol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31729028 31729028]; doi: [https://dx.doi.org/10.1002/path.5366 10.1002/path.5366]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31729028 61]. | #Sohier P, Sanson R, Leduc M, Audebourg A, Broussard C, Salnot V, Just PA, Pasmant E, Mayeux P, Guillonneau F, Romagnolo B, Perret C, Terris B, (2019) "Proteome analysis of formalin-fixed paraffin-embedded colorectal adenomas reveals the heterogeneous nature of traditional serrated adenomas compared to other colorectal adenomas." <i>J Pathol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31729028 31729028]; doi: [https://dx.doi.org/10.1002/path.5366 10.1002/path.5366]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31729028 61]. | ||
#Newey A, Griffiths B, Michaux J, Pak HS, Stevenson BJ, Woolston A, Semiannikova M, Spain G, Barber LJ, Matthews N, Rao S, Watkins D, Chau I, Coukos G, Racle J, Gfeller D, Starling N, Cunningham D, Bassani-Sternberg M, Gerlinger M, (2019) "Immunopeptidomics of colorectal cancer organoids reveals a sparse HLA class I neoantigen landscape and no increase in neoantigens with interferon or MEK-inhibitor treatment." <i>J Immunother Cancer</i> <b>7</b>(1):309; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31735170 31735170]; doi: [https://dx.doi.org/10.1186/s40425-019-0769-8 10.1186/s40425-019-0769-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31735170 193]. | #Newey A, Griffiths B, Michaux J, Pak HS, Stevenson BJ, Woolston A, Semiannikova M, Spain G, Barber LJ, Matthews N, Rao S, Watkins D, Chau I, Coukos G, Racle J, Gfeller D, Starling N, Cunningham D, Bassani-Sternberg M, Gerlinger M, (2019) "Immunopeptidomics of colorectal cancer organoids reveals a sparse HLA class I neoantigen landscape and no increase in neoantigens with interferon or MEK-inhibitor treatment." <i>J Immunother Cancer</i> <b>7</b>(1):309; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31735170 31735170]; doi: [https://dx.doi.org/10.1186/s40425-019-0769-8 10.1186/s40425-019-0769-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31735170 193]. | ||
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#Zhang Y, Lin Z, Tan Y, Bu F, Hao P, Zhang K, Yang H, Liu S, Ren Y, (2019) "Exploration of Missing Proteins by a Combination Approach to Enrich the Low-Abundance Hydrophobic Proteins from Four Cancer Cell Lines." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31773964 31773964]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00590 10.1021/acs.jproteome.9b00590]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31773964 16]. | #Zhang Y, Lin Z, Tan Y, Bu F, Hao P, Zhang K, Yang H, Liu S, Ren Y, (2019) "Exploration of Missing Proteins by a Combination Approach to Enrich the Low-Abundance Hydrophobic Proteins from Four Cancer Cell Lines." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31773964 31773964]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00590 10.1021/acs.jproteome.9b00590]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31773964 16]. | ||
#Löffler MW, Nussbaum B, Jäger G, Jurmeister PS, Budczies J, Pereira PL, Clasen S, Kowalewski DJ, Mühlenbruch L, Königsrainer I, Beckert S, Ladurner R, Wagner S, Bullinger F, Gross TH, Schroeder C, Sipos B, Königsrainer A, Stevanović S, Denkert C, Rammensee HG, Gouttefangeas C, Haen SP, (2019) "A Non-interventional Clinical Trial Assessing Immune Responses After Radiofrequency Ablation of Liver Metastases From Colorectal Cancer." <i>Front Immunol</i> <b>10</b>:2526; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31803175 31803175]; doi: [https://dx.doi.org/10.3389/fimmu.2019.02526 10.3389/fimmu.2019.02526]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31803175 76]. | #Löffler MW, Nussbaum B, Jäger G, Jurmeister PS, Budczies J, Pereira PL, Clasen S, Kowalewski DJ, Mühlenbruch L, Königsrainer I, Beckert S, Ladurner R, Wagner S, Bullinger F, Gross TH, Schroeder C, Sipos B, Königsrainer A, Stevanović S, Denkert C, Rammensee HG, Gouttefangeas C, Haen SP, (2019) "A Non-interventional Clinical Trial Assessing Immune Responses After Radiofrequency Ablation of Liver Metastases From Colorectal Cancer." <i>Front Immunol</i> <b>10</b>:2526; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31803175 31803175]; doi: [https://dx.doi.org/10.3389/fimmu.2019.02526 10.3389/fimmu.2019.02526]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31803175 76]. | ||
+ | #Hartenbach FARR, Velasquez É, Nogueira FCS, Domont GB, Ferreira E, Colombo APV, (2020) "Proteomic analysis of whole saliva in chronic periodontitis." <i>J Proteomics</i> <b>213</b>:103602; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31809901 31809901]; doi: [https://dx.doi.org/10.1016/j.jprot.2019.103602 10.1016/j.jprot.2019.103602]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31809901 56]. | ||
+ | #Dozio V, Lejon V, Mumba Ngoyi D, Büscher P, Sanchez JC, Tiberti N, (2019) "Cerebrospinal Fluid-Derived Microvesicles From Sleeping Sickness Patients Alter Protein Expression in Human Astrocytes." <i>Front Cell Infect Microbiol</i> <b>9</b>:391; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31824868 31824868]; doi: [https://dx.doi.org/10.3389/fcimb.2019.00391 10.3389/fcimb.2019.00391]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31824868 24]. | ||
#Szibor M, Gainutdinov T, Fernandez-Vizarra E, Dufour E, Gizatullina Z, Debska-Vielhaber G, Heidler J, Wittig I, Viscomi C, Gellerich F, Moore AL, (2020) "Bioenergetic consequences from xenotopic expression of a tunicate AOX in mouse mitochondria: Switch from RET and ROS to FET." <i>Biochim Biophys Acta Bioenerg</i> <b>1861</b>(2):148137; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31825809 31825809]; doi: [https://dx.doi.org/10.1016/j.bbabio.2019.148137 10.1016/j.bbabio.2019.148137]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31825809 96]. | #Szibor M, Gainutdinov T, Fernandez-Vizarra E, Dufour E, Gizatullina Z, Debska-Vielhaber G, Heidler J, Wittig I, Viscomi C, Gellerich F, Moore AL, (2020) "Bioenergetic consequences from xenotopic expression of a tunicate AOX in mouse mitochondria: Switch from RET and ROS to FET." <i>Biochim Biophys Acta Bioenerg</i> <b>1861</b>(2):148137; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31825809 31825809]; doi: [https://dx.doi.org/10.1016/j.bbabio.2019.148137 10.1016/j.bbabio.2019.148137]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31825809 96]. | ||
+ | #Loo LSW, Vethe H, Soetedjo AAP, Paulo JA, Jasmen J, Jackson N, Bjørlykke Y, Valdez IA, Vaudel M, Barsnes H, Gygi SP, Raeder H, Teo AKK, Kulkarni RN, (2020) "Dynamic proteome profiling of human pluripotent stem cell-derived pancreatic progenitors." <i>Stem Cells</i> <b>38</b>(4):542–555; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31828876 31828876]; doi: [https://dx.doi.org/10.1002/stem.3135 10.1002/stem.3135]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31828876 1]. | ||
+ | #Sarkizova S, Klaeger S, Le PM, Li LW, Oliveira G, Keshishian H, Hartigan CR, Zhang W, Braun DA, Ligon KL, Bachireddy P, Zervantonakis IK, Rosenbluth JM, Ouspenskaia T, Law T, Justesen S, Stevens J, Lane WJ, Eisenhaure T, Lan Zhang G, Clauser KR, Hacohen N, Carr SA, Wu CJ, Keskin DB, (2020) "A large peptidome dataset improves HLA class I epitope prediction across most of the human population." <i>Nat Biotechnol</i> <b>38</b>(2):199–209; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31844290 31844290]; doi: [https://dx.doi.org/10.1038/s41587-019-0322-9 10.1038/s41587-019-0322-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31844290 392]. | ||
#Solleder M, Guillaume P, Racle J, Michaux J, Pak HS, Müller M, Coukos G, Bassani-Sternberg M, Gfeller D, (2019) "Mass spectrometry based immunopeptidomics leads to robust predictions of phosphorylated HLA class I ligands." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31848261 31848261]; doi: [https://dx.doi.org/10.1074/mcp.TIR119.001641 10.1074/mcp.TIR119.001641]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31848261 208]. | #Solleder M, Guillaume P, Racle J, Michaux J, Pak HS, Müller M, Coukos G, Bassani-Sternberg M, Gfeller D, (2019) "Mass spectrometry based immunopeptidomics leads to robust predictions of phosphorylated HLA class I ligands." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31848261 31848261]; doi: [https://dx.doi.org/10.1074/mcp.TIR119.001641 10.1074/mcp.TIR119.001641]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31848261 208]. | ||
+ | #Tang F, Gao R, Jeevan-Raj B, Wyss CB, Kalathur RKR, Piscuoglio S, Ng CKY, Hindupur SK, Nuciforo S, Dazert E, Bock T, Song S, Buechel D, Morini MF, Hergovich A, Matthias P, Lim DS, Terracciano LM, Heim MH, Hall MN, Christofori G, (2019) "LATS1 but not LATS2 represses autophagy by a kinase-independent scaffold function." <i>Nat Commun</i> <b>10</b>(1):5755; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31848340 31848340]; doi: [https://dx.doi.org/10.1038/s41467-019-13591-7 10.1038/s41467-019-13591-7]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31848340 14]. | ||
+ | #Zhang Y, Mao Y, Zhao W, Su T, Zhong Y, Fu L, Zhu J, Cheng J, Yang H, (2020) "Glyco-CPLL: An Integrated Method for In-Depth and Comprehensive N-Glycoproteome Profiling of Human Plasma." <i>J Proteome Res</i> <b>19</b>(2):655–666; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31860302 31860302]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00557 10.1021/acs.jproteome.9b00557]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31860302 12]. | ||
#Nobre LV, Nightingale K, Ravenhill BJ, Antrobus R, Soday L, Nichols J, Davies JA, Seirafian S, Wang EC, Davison AJ, Wilkinson GW, Stanton RJ, Huttlin EL, Weekes MP, (2019) "Human cytomegalovirus interactome analysis identifies degradation hubs, domain associations and viral protein functions." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31873071 31873071]; doi: [https://dx.doi.org/10.7554/eLife.49894 10.7554/eLife.49894]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31873071 354]. | #Nobre LV, Nightingale K, Ravenhill BJ, Antrobus R, Soday L, Nichols J, Davies JA, Seirafian S, Wang EC, Davison AJ, Wilkinson GW, Stanton RJ, Huttlin EL, Weekes MP, (2019) "Human cytomegalovirus interactome analysis identifies degradation hubs, domain associations and viral protein functions." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31873071 31873071]; doi: [https://dx.doi.org/10.7554/eLife.49894 10.7554/eLife.49894]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31873071 354]. | ||
#Mühlhofer M, Berchtold E, Stratil CG, Csaba G, Kunold E, Bach NC, Sieber SA, Haslbeck M, Zimmer R, Buchner J, (2019) "The Heat Shock Response in Yeast Maintains Protein Homeostasis by Chaperoning and Replenishing Proteins." <i>Cell Rep</i> <b>29</b>(13):4593–4607.e8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31875563 31875563]; doi: [https://dx.doi.org/10.1016/j.celrep.2019.11.109 10.1016/j.celrep.2019.11.109]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31875563 15]. | #Mühlhofer M, Berchtold E, Stratil CG, Csaba G, Kunold E, Bach NC, Sieber SA, Haslbeck M, Zimmer R, Buchner J, (2019) "The Heat Shock Response in Yeast Maintains Protein Homeostasis by Chaperoning and Replenishing Proteins." <i>Cell Rep</i> <b>29</b>(13):4593–4607.e8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31875563 31875563]; doi: [https://dx.doi.org/10.1016/j.celrep.2019.11.109 10.1016/j.celrep.2019.11.109]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31875563 15]. | ||
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#Mugahid DA, Sengul TG, You X, Wang Y, Steil L, Bergmann N, Radke MH, Ofenbauer A, Gesell-Salazar M, Balogh A, Kempa S, Tursun B, Robbins CT, Völker U, Chen W, Nelson L, Gotthardt M, (2019) "Proteomic and Transcriptomic Changes in Hibernating Grizzly Bears Reveal Metabolic and Signaling Pathways that Protect against Muscle Atrophy." <i>Sci Rep</i> <b>9</b>(1):19976; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31882638 31882638]; doi: [https://dx.doi.org/10.1038/s41598-019-56007-8 10.1038/s41598-019-56007-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31882638 16]. | #Mugahid DA, Sengul TG, You X, Wang Y, Steil L, Bergmann N, Radke MH, Ofenbauer A, Gesell-Salazar M, Balogh A, Kempa S, Tursun B, Robbins CT, Völker U, Chen W, Nelson L, Gotthardt M, (2019) "Proteomic and Transcriptomic Changes in Hibernating Grizzly Bears Reveal Metabolic and Signaling Pathways that Protect against Muscle Atrophy." <i>Sci Rep</i> <b>9</b>(1):19976; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31882638 31882638]; doi: [https://dx.doi.org/10.1038/s41598-019-56007-8 10.1038/s41598-019-56007-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31882638 16]. | ||
#Rispoli LA, Edwards JL, Pohler KG, Russell S, Somiari RI, Payton RR, Schrick FN, (2019) "Heat-induced hyperthermia impacts the follicular fluid proteome of the periovulatory follicle in lactating dairy cows." <i>PLoS One</i> <b>14</b>(12):e0227095; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31887207 31887207]; doi: [https://dx.doi.org/10.1371/journal.pone.0227095 10.1371/journal.pone.0227095]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31887207 5]. | #Rispoli LA, Edwards JL, Pohler KG, Russell S, Somiari RI, Payton RR, Schrick FN, (2019) "Heat-induced hyperthermia impacts the follicular fluid proteome of the periovulatory follicle in lactating dairy cows." <i>PLoS One</i> <b>14</b>(12):e0227095; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31887207 31887207]; doi: [https://dx.doi.org/10.1371/journal.pone.0227095 10.1371/journal.pone.0227095]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31887207 5]. | ||
+ | #Bhuiyan F, Campos NA, Swennen R, Carpentier S, (2020) "Characterizing fruit ripening in plantain and Cavendish bananas: A proteomics approach." <i>J Proteomics</i> <b>214</b>:103632; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31891784 31891784]; doi: [https://dx.doi.org/10.1016/j.jprot.2019.103632 10.1016/j.jprot.2019.103632]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31891784 50]. | ||
#Róka B, Tod P, Kaucsár T, Vizovišek M, Vidmar R, Turk B, Fonović M, Szénási G, Hamar P, (2019) "The Acute Phase Response Is a Prominent Renal Proteome Change in Sepsis in Mice." <i>Int J Mol Sci</i> <b>21</b>(1):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31892161 31892161]; doi: [https://dx.doi.org/10.3390/ijms21010200 10.3390/ijms21010200]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31892161 120]. | #Róka B, Tod P, Kaucsár T, Vizovišek M, Vidmar R, Turk B, Fonović M, Szénási G, Hamar P, (2019) "The Acute Phase Response Is a Prominent Renal Proteome Change in Sepsis in Mice." <i>Int J Mol Sci</i> <b>21</b>(1):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31892161 31892161]; doi: [https://dx.doi.org/10.3390/ijms21010200 10.3390/ijms21010200]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31892161 120]. | ||
#Isobe K, Raghuram V, Krishnan L, Chou CL, Yang CR, Knepper MA, (2020) "CRISPR-Cas9/phosphoproteomics identifies multiple noncanonical targets of myosin light chain kinase." <i>Am J Physiol Renal Physiol</i> <b>318</b>(3):F600–F616; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31904282 31904282]; doi: [https://dx.doi.org/10.1152/ajprenal.00431.2019 10.1152/ajprenal.00431.2019]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31904282 75]. | #Isobe K, Raghuram V, Krishnan L, Chou CL, Yang CR, Knepper MA, (2020) "CRISPR-Cas9/phosphoproteomics identifies multiple noncanonical targets of myosin light chain kinase." <i>Am J Physiol Renal Physiol</i> <b>318</b>(3):F600–F616; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31904282 31904282]; doi: [https://dx.doi.org/10.1152/ajprenal.00431.2019 10.1152/ajprenal.00431.2019]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31904282 75]. | ||
#Hose J, Escalante LE, Clowers KJ, Dutcher HA, Robinson D, Bouriakov V, Coon JJ, Shishkova E, Gasch AP, (2020) "The genetic basis of aneuploidy tolerance in wild yeast." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31909711 31909711]; doi: [https://dx.doi.org/10.7554/eLife.52063 10.7554/eLife.52063]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31909711 24]. | #Hose J, Escalante LE, Clowers KJ, Dutcher HA, Robinson D, Bouriakov V, Coon JJ, Shishkova E, Gasch AP, (2020) "The genetic basis of aneuploidy tolerance in wild yeast." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31909711 31909711]; doi: [https://dx.doi.org/10.7554/eLife.52063 10.7554/eLife.52063]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31909711 24]. | ||
#Bian Y, Zheng R, Bayer FP, Wong C, Chang YC, Meng C, Zolg DP, Reinecke M, Zecha J, Wiechmann S, Heinzlmeir S, Scherr J, Hemmer B, Baynham M, Gingras AC, Boychenko O, Kuster B, (2020) "Robust, reproducible and quantitative analysis of thousands of proteomes by micro-flow LC-MS/MS." <i>Nat Commun</i> <b>11</b>(1):157; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31919466 31919466]; doi: [https://dx.doi.org/10.1038/s41467-019-13973-x 10.1038/s41467-019-13973-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31919466 2175]. | #Bian Y, Zheng R, Bayer FP, Wong C, Chang YC, Meng C, Zolg DP, Reinecke M, Zecha J, Wiechmann S, Heinzlmeir S, Scherr J, Hemmer B, Baynham M, Gingras AC, Boychenko O, Kuster B, (2020) "Robust, reproducible and quantitative analysis of thousands of proteomes by micro-flow LC-MS/MS." <i>Nat Commun</i> <b>11</b>(1):157; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31919466 31919466]; doi: [https://dx.doi.org/10.1038/s41467-019-13973-x 10.1038/s41467-019-13973-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31919466 2175]. | ||
- | #Bai B, Wang X, Li Y, Chen PC, Yu K, Dey KK, Yarbro JM, Han X, Lutz BM, Rao S, Jiao Y, Sifford JM, Han J, Wang M, Tan H, Shaw TI, Cho JH, Zhou S, Wang H, Niu M, Mancieri A, Messler KA, Sun X, Wu Z, Pagala V, High AA, Bi W, Zhang H, Chi H, Haroutunian V, Zhang B, Beach TG, Yu G, Peng J, (2020) "Deep Multilayer Brain Proteomics Identifies Molecular Networks in Alzheimer's Disease Progression." <i>Neuron</i> <b>105</b>(6):975–991.e7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31926610 31926610]; doi: [https://dx.doi.org/10.1016/j.neuron.2019.12.015 10.1016/j.neuron.2019.12.015]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31926610 | + | #Bai B, Wang X, Li Y, Chen PC, Yu K, Dey KK, Yarbro JM, Han X, Lutz BM, Rao S, Jiao Y, Sifford JM, Han J, Wang M, Tan H, Shaw TI, Cho JH, Zhou S, Wang H, Niu M, Mancieri A, Messler KA, Sun X, Wu Z, Pagala V, High AA, Bi W, Zhang H, Chi H, Haroutunian V, Zhang B, Beach TG, Yu G, Peng J, (2020) "Deep Multilayer Brain Proteomics Identifies Molecular Networks in Alzheimer's Disease Progression." <i>Neuron</i> <b>105</b>(6):975–991.e7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31926610 31926610]; doi: [https://dx.doi.org/10.1016/j.neuron.2019.12.015 10.1016/j.neuron.2019.12.015]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31926610 308]. |
#Hijazi M, Smith R, Rajeeve V, Bessant C, Cutillas PR, (2020) "Reconstructing kinase network topologies from phosphoproteomics data reveals cancer-associated rewiring." <i>Nat Biotechnol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31959955 31959955]; doi: [https://dx.doi.org/10.1038/s41587-019-0391-9 10.1038/s41587-019-0391-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31959955 874]. | #Hijazi M, Smith R, Rajeeve V, Bessant C, Cutillas PR, (2020) "Reconstructing kinase network topologies from phosphoproteomics data reveals cancer-associated rewiring." <i>Nat Biotechnol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31959955 31959955]; doi: [https://dx.doi.org/10.1038/s41587-019-0391-9 10.1038/s41587-019-0391-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31959955 874]. | ||
#Xu K, Yang L, Zhang L, Qi H, (2020) "Lack of AKAP3 disrupts integrity of the subcellular structure and proteome of mouse sperm and causes male sterility." <i>Development</i> <b>147</b>(2):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31969357 31969357]; doi: [https://dx.doi.org/10.1242/dev.181057 10.1242/dev.181057]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31969357 3]. | #Xu K, Yang L, Zhang L, Qi H, (2020) "Lack of AKAP3 disrupts integrity of the subcellular structure and proteome of mouse sperm and causes male sterility." <i>Development</i> <b>147</b>(2):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31969357 31969357]; doi: [https://dx.doi.org/10.1242/dev.181057 10.1242/dev.181057]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31969357 3]. | ||
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#Gonnet J, Poncelet L, Meriaux C, Gonçalves E, Weiss L, Tchitchek N, Pedruzzi E, Soria A, Boccara D, Vogt A, Bonduelle O, Hamm G, Ait-Belkacem R, Stauber J, Fournier I, Wisztorski M, Combadiere B, (2020) "Mechanisms of innate events during skin reaction following intradermal injection of seasonal influenza vaccine." <i>J Proteomics</i> <b>216</b>:103670; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31991189 31991189]; doi: [https://dx.doi.org/10.1016/j.jprot.2020.103670 10.1016/j.jprot.2020.103670]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31991189 48]. | #Gonnet J, Poncelet L, Meriaux C, Gonçalves E, Weiss L, Tchitchek N, Pedruzzi E, Soria A, Boccara D, Vogt A, Bonduelle O, Hamm G, Ait-Belkacem R, Stauber J, Fournier I, Wisztorski M, Combadiere B, (2020) "Mechanisms of innate events during skin reaction following intradermal injection of seasonal influenza vaccine." <i>J Proteomics</i> <b>216</b>:103670; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31991189 31991189]; doi: [https://dx.doi.org/10.1016/j.jprot.2020.103670 10.1016/j.jprot.2020.103670]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31991189 48]. | ||
#Veyel D, Wenger K, Broermann A, Bretschneider T, Luippold AH, Krawczyk B, Rist W, Simon E, (2020) "Biomarker discovery for chronic liver diseases by multi-omics - a preclinical case study." <i>Sci Rep</i> <b>10</b>(1):1314; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31992752 31992752]; doi: [https://dx.doi.org/10.1038/s41598-020-58030-6 10.1038/s41598-020-58030-6]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31992752 4]. | #Veyel D, Wenger K, Broermann A, Bretschneider T, Luippold AH, Krawczyk B, Rist W, Simon E, (2020) "Biomarker discovery for chronic liver diseases by multi-omics - a preclinical case study." <i>Sci Rep</i> <b>10</b>(1):1314; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31992752 31992752]; doi: [https://dx.doi.org/10.1038/s41598-020-58030-6 10.1038/s41598-020-58030-6]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31992752 4]. | ||
+ | #Thézénas ML, De Leo B, Laux-Biehlmann A, Bafligil C, Elger B, Tapmeier T, Morten K, Rahmioglu N, Dakin SG, Charles P, Martinez FE, Steers G, Fischer OM, Mueller J, Hess-Stumpp H, Steinmeyer A, Manek S, Zondervan KT, Kennedy S, Becker CM, Shang C, Zollner TM, Kessler BM, Oppermann U, (2020) "Amine oxidase 3 is a novel pro-inflammatory marker of oxidative stress in peritoneal endometriosis lesions." <i>Sci Rep</i> <b>10</b>(1):1495; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32001775 32001775]; doi: [https://dx.doi.org/10.1038/s41598-020-58362-3 10.1038/s41598-020-58362-3]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32001775 18]. | ||
#Lindberg T, de Ávila RI, Zeller KS, Levander F, Eriksson D, Chawade A, Lindstedt M, (2020) "An integrated transcriptomic- and proteomic-based approach to evaluate the human skin sensitization potential of glyphosate and its commercial agrochemical formulations." <i>J Proteomics</i> <b>217</b>:103647; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32006680 32006680]; doi: [https://dx.doi.org/10.1016/j.jprot.2020.103647 10.1016/j.jprot.2020.103647]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32006680 21]. | #Lindberg T, de Ávila RI, Zeller KS, Levander F, Eriksson D, Chawade A, Lindstedt M, (2020) "An integrated transcriptomic- and proteomic-based approach to evaluate the human skin sensitization potential of glyphosate and its commercial agrochemical formulations." <i>J Proteomics</i> <b>217</b>:103647; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32006680 32006680]; doi: [https://dx.doi.org/10.1016/j.jprot.2020.103647 10.1016/j.jprot.2020.103647]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32006680 21]. | ||
#Yasuda S, Tsuchiya H, Kaiho A, Guo Q, Ikeuchi K, Endo A, Arai N, Ohtake F, Murata S, Inada T, Baumeister W, Fernández-Busnadiego R, Tanaka K, Saeki Y, (2020) "Stress- and ubiquitylation-dependent phase separation of the proteasome." <i>Nature</i> <b>578</b>(7794):296–300; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32025036 32025036]; doi: [https://dx.doi.org/10.1038/s41586-020-1982-9 10.1038/s41586-020-1982-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32025036 6]. | #Yasuda S, Tsuchiya H, Kaiho A, Guo Q, Ikeuchi K, Endo A, Arai N, Ohtake F, Murata S, Inada T, Baumeister W, Fernández-Busnadiego R, Tanaka K, Saeki Y, (2020) "Stress- and ubiquitylation-dependent phase separation of the proteasome." <i>Nature</i> <b>578</b>(7794):296–300; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32025036 32025036]; doi: [https://dx.doi.org/10.1038/s41586-020-1982-9 10.1038/s41586-020-1982-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32025036 6]. | ||
+ | #Nitschko V, Kunzelmann S, Fröhlich T, Arnold GJ, Förstemann K, (2020) "Trafficking of siRNA precursors by the dsRBD protein Blanks in Drosophila." <i>Nucleic Acids Res</i> <b>48</b>(7):3906–3921; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32025726 32025726]; doi: [https://dx.doi.org/10.1093/nar/gkaa072 10.1093/nar/gkaa072]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32025726 12]. | ||
#Pini T, Parks J, Russ J, Dzieciatkowska M, Hansen KC, Schoolcraft WB, Katz-Jaffe M, (2020) "Obesity significantly alters the human sperm proteome, with potential implications for fertility." <i>J Assist Reprod Genet</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32026202 32026202]; doi: [https://dx.doi.org/10.1007/s10815-020-01707-8 10.1007/s10815-020-01707-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32026202 20]. | #Pini T, Parks J, Russ J, Dzieciatkowska M, Hansen KC, Schoolcraft WB, Katz-Jaffe M, (2020) "Obesity significantly alters the human sperm proteome, with potential implications for fertility." <i>J Assist Reprod Genet</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32026202 32026202]; doi: [https://dx.doi.org/10.1007/s10815-020-01707-8 10.1007/s10815-020-01707-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32026202 20]. | ||
#Storey AJ, Hardman RE, Byrum SD, Mackintosh SG, Edmondson RD, Wahls WP, Tackett AJ, Lewis JA, (2020) "Accurate and Sensitive Quantitation of the Dynamic Heat Shock Proteome Using Tandem Mass Tags." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32027144 32027144]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00704 10.1021/acs.jproteome.9b00704]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32027144 2]. | #Storey AJ, Hardman RE, Byrum SD, Mackintosh SG, Edmondson RD, Wahls WP, Tackett AJ, Lewis JA, (2020) "Accurate and Sensitive Quantitation of the Dynamic Heat Shock Proteome Using Tandem Mass Tags." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32027144 32027144]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00704 10.1021/acs.jproteome.9b00704]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32027144 2]. | ||
#Eldridge MJG, Pereira JM, Impens F, Hamon MA, (2020) "Active nuclear import of the deacetylase Sirtuin-2 is controlled by its C-terminus and importins." <i>Sci Rep</i> <b>10</b>(1):2034; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32042025 32042025]; doi: [https://dx.doi.org/10.1038/s41598-020-58397-6 10.1038/s41598-020-58397-6]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32042025 6]. | #Eldridge MJG, Pereira JM, Impens F, Hamon MA, (2020) "Active nuclear import of the deacetylase Sirtuin-2 is controlled by its C-terminus and importins." <i>Sci Rep</i> <b>10</b>(1):2034; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32042025 32042025]; doi: [https://dx.doi.org/10.1038/s41598-020-58397-6 10.1038/s41598-020-58397-6]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32042025 6]. | ||
+ | # () "" <i></i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/ ]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32047005 3]. | ||
#Zhao Q, Laverdure JP, Lanoix J, Durette C, Coté C, Bonneil E, Laumont CM, Gendron P, Vincent K, Courcelles M, Lemieux S, Millar DG, Ohashi PS, Thibault P, Perreault C, (2020) "Proteogenomics uncovers a vast repertoire of shared tumor-specific antigens in ovarian cancer." <i>Cancer Immunol Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32047025 32047025]; doi: [https://dx.doi.org/10.1158/2326-6066.CIR-19-0541 10.1158/2326-6066.CIR-19-0541]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32047025 12]. | #Zhao Q, Laverdure JP, Lanoix J, Durette C, Coté C, Bonneil E, Laumont CM, Gendron P, Vincent K, Courcelles M, Lemieux S, Millar DG, Ohashi PS, Thibault P, Perreault C, (2020) "Proteogenomics uncovers a vast repertoire of shared tumor-specific antigens in ovarian cancer." <i>Cancer Immunol Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32047025 32047025]; doi: [https://dx.doi.org/10.1158/2326-6066.CIR-19-0541 10.1158/2326-6066.CIR-19-0541]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32047025 12]. | ||
#Plum T, Wang X, Rettel M, Krijgsveld J, Feyerabend TB, Rodewald HR, (2020) "Human Mast Cell Proteome Reveals Unique Lineage, Putative Functions, and Structural Basis for Cell Ablation." <i>Immunity</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32049054 32049054]; doi: [https://dx.doi.org/10.1016/j.immuni.2020.01.012 10.1016/j.immuni.2020.01.012]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32049054 12]. | #Plum T, Wang X, Rettel M, Krijgsveld J, Feyerabend TB, Rodewald HR, (2020) "Human Mast Cell Proteome Reveals Unique Lineage, Putative Functions, and Structural Basis for Cell Ablation." <i>Immunity</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32049054 32049054]; doi: [https://dx.doi.org/10.1016/j.immuni.2020.01.012 10.1016/j.immuni.2020.01.012]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32049054 12]. | ||
#Ray S, Valekunja UK, Stangherlin A, Howell SA, Snijders AP, Damodaran G, Reddy AB, (2020) "Circadian rhythms in the absence of the clock gene <i>Bmal1</i>." <i>Science</i> <b>367</b>(6479):800–806; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32054765 32054765]; doi: [https://dx.doi.org/10.1126/science.aaw7365 10.1126/science.aaw7365]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32054765 40]. | #Ray S, Valekunja UK, Stangherlin A, Howell SA, Snijders AP, Damodaran G, Reddy AB, (2020) "Circadian rhythms in the absence of the clock gene <i>Bmal1</i>." <i>Science</i> <b>367</b>(6479):800–806; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32054765 32054765]; doi: [https://dx.doi.org/10.1126/science.aaw7365 10.1126/science.aaw7365]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32054765 40]. | ||
#Saddala MS, Lennikov A, Huang H, (2020) "Placental growth factor regulates the pentose phosphate pathway and antioxidant defense systems in human retinal endothelial cells." <i>J Proteomics</i> <b>217</b>:103682; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32058040 32058040]; doi: [https://dx.doi.org/10.1016/j.jprot.2020.103682 10.1016/j.jprot.2020.103682]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32058040 1]. | #Saddala MS, Lennikov A, Huang H, (2020) "Placental growth factor regulates the pentose phosphate pathway and antioxidant defense systems in human retinal endothelial cells." <i>J Proteomics</i> <b>217</b>:103682; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32058040 32058040]; doi: [https://dx.doi.org/10.1016/j.jprot.2020.103682 10.1016/j.jprot.2020.103682]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32058040 1]. | ||
+ | #Ge M, Qiao Z, Kong Y, Lu H, Liu H, (2020) "Exosomes mediate intercellular transfer of non-autonomous tolerance to proteasome inhibitors in mixed-lineage leukemia." <i>Cancer Sci</i> <b>111</b>(4):1279–1290; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32058648 32058648]; doi: [https://dx.doi.org/10.1111/cas.14351 10.1111/cas.14351]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32058648 6]. | ||
#Kosok M, Alli-Shaik A, Bay BH, Gunaratne J, (2020) "Comprehensive Proteomic Characterization Reveals Subclass-Specific Molecular Aberrations within Triple-negative Breast Cancer." <i>iScience</i> <b>23</b>(2):100868; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32058975 32058975]; doi: [https://dx.doi.org/10.1016/j.isci.2020.100868 10.1016/j.isci.2020.100868]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32058975 8]. | #Kosok M, Alli-Shaik A, Bay BH, Gunaratne J, (2020) "Comprehensive Proteomic Characterization Reveals Subclass-Specific Molecular Aberrations within Triple-negative Breast Cancer." <i>iScience</i> <b>23</b>(2):100868; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32058975 32058975]; doi: [https://dx.doi.org/10.1016/j.isci.2020.100868 10.1016/j.isci.2020.100868]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32058975 8]. | ||
#Dou Y, Kawaler EA, Cui Zhou D, Gritsenko MA, Huang C, Blumenberg L, Karpova A, Petyuk VA, Savage SR, Satpathy S, Liu W, Wu Y, Tsai CF, Wen B, Li Z, Cao S, Moon J, Shi Z, Cornwell M, Wyczalkowski MA, Chu RK, Vasaikar S, Zhou H, Gao Q, Moore RJ, Li K, Sethuraman S, Monroe ME, Zhao R, Heiman D, Krug K, Clauser K, Kothadia R, Maruvka Y, Pico AR, Oliphant AE, Hoskins EL, Pugh SL, Beecroft SJI, Adams DW, Jarman JC, Kong A, Chang HY, Reva B, Liao Y, Rykunov D, Colaprico A, Chen XS, Czekański A, Jędryka M, Matkowski R, Wiznerowicz M, Hiltke T, Boja E, Kinsinger CR, Mesri M, Robles AI, Rodriguez H, Mutch D, Fuh K, Ellis MJ, DeLair D, Thiagarajan M, Mani DR, Getz G, Noble M, Nesvizhskii AI, Wang P, Anderson ML, Levine DA, Smith RD, Payne SH, Ruggles KV, Rodland KD, Ding L, Zhang B, Liu T, Fenyö D, Clinical Proteomic Tumor Analysis Consortium., (2020) "Proteogenomic Characterization of Endometrial Carcinoma." <i>Cell</i> <b>180</b>(4):729–748.e26; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32059776 32059776]; doi: [https://dx.doi.org/10.1016/j.cell.2020.01.026 10.1016/j.cell.2020.01.026]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32059776 208]. | #Dou Y, Kawaler EA, Cui Zhou D, Gritsenko MA, Huang C, Blumenberg L, Karpova A, Petyuk VA, Savage SR, Satpathy S, Liu W, Wu Y, Tsai CF, Wen B, Li Z, Cao S, Moon J, Shi Z, Cornwell M, Wyczalkowski MA, Chu RK, Vasaikar S, Zhou H, Gao Q, Moore RJ, Li K, Sethuraman S, Monroe ME, Zhao R, Heiman D, Krug K, Clauser K, Kothadia R, Maruvka Y, Pico AR, Oliphant AE, Hoskins EL, Pugh SL, Beecroft SJI, Adams DW, Jarman JC, Kong A, Chang HY, Reva B, Liao Y, Rykunov D, Colaprico A, Chen XS, Czekański A, Jędryka M, Matkowski R, Wiznerowicz M, Hiltke T, Boja E, Kinsinger CR, Mesri M, Robles AI, Rodriguez H, Mutch D, Fuh K, Ellis MJ, DeLair D, Thiagarajan M, Mani DR, Getz G, Noble M, Nesvizhskii AI, Wang P, Anderson ML, Levine DA, Smith RD, Payne SH, Ruggles KV, Rodland KD, Ding L, Zhang B, Liu T, Fenyö D, Clinical Proteomic Tumor Analysis Consortium., (2020) "Proteogenomic Characterization of Endometrial Carcinoma." <i>Cell</i> <b>180</b>(4):729–748.e26; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32059776 32059776]; doi: [https://dx.doi.org/10.1016/j.cell.2020.01.026 10.1016/j.cell.2020.01.026]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32059776 208]. | ||
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#Villaseñor R, Pfaendler R, Ambrosi C, Butz S, Giuliani S, Bryan E, Sheahan TW, Gable AL, Schmolka N, Manzo M, Wirz J, Feller C, von Mering C, Aebersold R, Voigt P, Baubec T, (2020) "ChromID identifies the protein interactome at chromatin marks." <i>Nat Biotechnol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32123383 32123383]; doi: [https://dx.doi.org/10.1038/s41587-020-0434-2 10.1038/s41587-020-0434-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32123383 32]. | #Villaseñor R, Pfaendler R, Ambrosi C, Butz S, Giuliani S, Bryan E, Sheahan TW, Gable AL, Schmolka N, Manzo M, Wirz J, Feller C, von Mering C, Aebersold R, Voigt P, Baubec T, (2020) "ChromID identifies the protein interactome at chromatin marks." <i>Nat Biotechnol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32123383 32123383]; doi: [https://dx.doi.org/10.1038/s41587-020-0434-2 10.1038/s41587-020-0434-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32123383 32]. | ||
#Subbannayya Y, Pinto SM, Mohanty V, Dagamajalu S, Prasad TSK, Murthy KR, (2020) "What Makes Cornea Immunologically Unique and Privileged? Mechanistic Clues from a High-Resolution Proteomic Landscape of the Human Cornea." <i>OMICS</i> <b>24</b>(3):129–139; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32125911 32125911]; doi: [https://dx.doi.org/10.1089/omi.2019.0190 10.1089/omi.2019.0190]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32125911 2]. | #Subbannayya Y, Pinto SM, Mohanty V, Dagamajalu S, Prasad TSK, Murthy KR, (2020) "What Makes Cornea Immunologically Unique and Privileged? Mechanistic Clues from a High-Resolution Proteomic Landscape of the Human Cornea." <i>OMICS</i> <b>24</b>(3):129–139; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32125911 32125911]; doi: [https://dx.doi.org/10.1089/omi.2019.0190 10.1089/omi.2019.0190]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32125911 2]. | ||
+ | #Crescitelli R, Lässer C, Jang SC, Cvjetkovic A, Malmhäll C, Karimi N, Höög JL, Johansson I, Fuchs J, Thorsell A, Gho YS, Olofsson Bagge R, Lötvall J, (2020) "Subpopulations of extracellular vesicles from human metastatic melanoma tissue identified by quantitative proteomics after optimized isolation." <i>J Extracell Vesicles</i> <b>9</b>(1):1722433; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32128073 32128073]; doi: [https://dx.doi.org/10.1080/20013078.2020.1722433 10.1080/20013078.2020.1722433]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32128073 60]. | ||
#Ding H, Fazelinia H, Spruce LA, Weiss DA, Zderic SA, Seeholzer SH, (2020) "Urine proteomics: Evaluation of different sample preparation workflows for quantitative, reproducible and improved depth of analysis." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32129078 32129078]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00772 10.1021/acs.jproteome.9b00772]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32129078 16]. | #Ding H, Fazelinia H, Spruce LA, Weiss DA, Zderic SA, Seeholzer SH, (2020) "Urine proteomics: Evaluation of different sample preparation workflows for quantitative, reproducible and improved depth of analysis." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32129078 32129078]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00772 10.1021/acs.jproteome.9b00772]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32129078 16]. | ||
#Bernatik O, Pejskova P, Vyslouzil D, Hanakova K, Zdrahal Z, Cajanek L, (2020) "Phosphorylation of multiple proteins involved in ciliogenesis by Tau Tubulin kinase 2." <i>Mol Biol Cell</i> <b></b>:mbcE19060334; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32129703 32129703]; doi: [https://dx.doi.org/10.1091/mbc.E19-06-0334 10.1091/mbc.E19-06-0334]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32129703 165]. | #Bernatik O, Pejskova P, Vyslouzil D, Hanakova K, Zdrahal Z, Cajanek L, (2020) "Phosphorylation of multiple proteins involved in ciliogenesis by Tau Tubulin kinase 2." <i>Mol Biol Cell</i> <b></b>:mbcE19060334; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32129703 32129703]; doi: [https://dx.doi.org/10.1091/mbc.E19-06-0334 10.1091/mbc.E19-06-0334]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32129703 165]. | ||
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#Tannous A, Boonen M, Zheng H, Zhao C, Germain CJ, Moore DF, Sleat DE, Jadot M, Lobel P, (2020) "Comparative Analysis of Quantitative Mass Spectrometric Methods for Subcellular Proteomics." <i>J Proteome Res</i> <b>19</b>(4):1718–1730; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32134668 32134668]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00862 10.1021/acs.jproteome.9b00862]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32134668 25]. | #Tannous A, Boonen M, Zheng H, Zhao C, Germain CJ, Moore DF, Sleat DE, Jadot M, Lobel P, (2020) "Comparative Analysis of Quantitative Mass Spectrometric Methods for Subcellular Proteomics." <i>J Proteome Res</i> <b>19</b>(4):1718–1730; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32134668 32134668]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00862 10.1021/acs.jproteome.9b00862]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32134668 25]. | ||
#Shayan R, Rinaldi D, Larburu N, Plassart L, Balor S, Bouyssié D, Lebaron S, Marcoux J, Gleizes PE, Plisson-Chastang C, (2020) "Good Vibrations: Structural Remodeling of Maturing Yeast Pre-40S Ribosomal Particles Followed by Cryo-Electron Microscopy." <i>Molecules</i> <b>25</b>(5):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32138239 32138239]; doi: [https://dx.doi.org/10.3390/molecules25051125 10.3390/molecules25051125]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32138239 2]. | #Shayan R, Rinaldi D, Larburu N, Plassart L, Balor S, Bouyssié D, Lebaron S, Marcoux J, Gleizes PE, Plisson-Chastang C, (2020) "Good Vibrations: Structural Remodeling of Maturing Yeast Pre-40S Ribosomal Particles Followed by Cryo-Electron Microscopy." <i>Molecules</i> <b>25</b>(5):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32138239 32138239]; doi: [https://dx.doi.org/10.3390/molecules25051125 10.3390/molecules25051125]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32138239 2]. | ||
+ | # () "" <i></i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/ ]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32139433 8]. | ||
#Parker BL, Kiens B, Wojtaszewski JFP, Richter EA, James DE, (2020) "Quantification of exercise-regulated ubiquitin signaling in human skeletal muscle identifies protein modification cross talk via NEDDylation." <i>FASEB J</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32141134 32141134]; doi: [https://dx.doi.org/10.1096/fj.202000075R 10.1096/fj.202000075R]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32141134 45]. | #Parker BL, Kiens B, Wojtaszewski JFP, Richter EA, James DE, (2020) "Quantification of exercise-regulated ubiquitin signaling in human skeletal muscle identifies protein modification cross talk via NEDDylation." <i>FASEB J</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32141134 32141134]; doi: [https://dx.doi.org/10.1096/fj.202000075R 10.1096/fj.202000075R]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32141134 45]. | ||
#Wilson JP, Ipsaro JJ, Del Giudice SN, Turna NS, Gauss CM, Dusenbury KH, Marquart K, Rivera KD, Pappin DJ, (2020) "Tryp-N: A Thermostable Protease for the Production of N-terminal Argininyl and Lysinyl Peptides." <i>J Proteome Res</i> <b>19</b>(4):1459–1469; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32141294 32141294]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00713 10.1021/acs.jproteome.9b00713]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32141294 3]. | #Wilson JP, Ipsaro JJ, Del Giudice SN, Turna NS, Gauss CM, Dusenbury KH, Marquart K, Rivera KD, Pappin DJ, (2020) "Tryp-N: A Thermostable Protease for the Production of N-terminal Argininyl and Lysinyl Peptides." <i>J Proteome Res</i> <b>19</b>(4):1459–1469; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32141294 32141294]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00713 10.1021/acs.jproteome.9b00713]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32141294 3]. | ||
#Dietachmayr M, Rathakrishnan A, Karpiuk O, von Zweydorf F, Engleitner T, Fernández-Sáiz V, Schenk P, Ueffing M, Rad R, Eilers M, Gloeckner CJ, Clemm von Hohenberg K, Bassermann F, (2020) "Antagonistic activities of CDC14B and CDK1 on USP9X regulate WT1-dependent mitotic transcription and survival." <i>Nat Commun</i> <b>11</b>(1):1268; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32152317 32152317]; doi: [https://dx.doi.org/10.1038/s41467-020-15059-5 10.1038/s41467-020-15059-5]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32152317 3]. | #Dietachmayr M, Rathakrishnan A, Karpiuk O, von Zweydorf F, Engleitner T, Fernández-Sáiz V, Schenk P, Ueffing M, Rad R, Eilers M, Gloeckner CJ, Clemm von Hohenberg K, Bassermann F, (2020) "Antagonistic activities of CDC14B and CDK1 on USP9X regulate WT1-dependent mitotic transcription and survival." <i>Nat Commun</i> <b>11</b>(1):1268; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32152317 32152317]; doi: [https://dx.doi.org/10.1038/s41467-020-15059-5 10.1038/s41467-020-15059-5]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32152317 3]. | ||
#Wan X, Vomund AN, Peterson OJ, Chervonsky AV, Lichti CF, Unanue ER, (2020) "The MHC-II peptidome of pancreatic islets identifies key features of autoimmune peptides." <i>Nat Immunol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32152506 32152506]; doi: [https://dx.doi.org/10.1038/s41590-020-0623-7 10.1038/s41590-020-0623-7]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32152506 9]. | #Wan X, Vomund AN, Peterson OJ, Chervonsky AV, Lichti CF, Unanue ER, (2020) "The MHC-II peptidome of pancreatic islets identifies key features of autoimmune peptides." <i>Nat Immunol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32152506 32152506]; doi: [https://dx.doi.org/10.1038/s41590-020-0623-7 10.1038/s41590-020-0623-7]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32152506 9]. | ||
+ | #Kjell J, Götz M, (2020) "Filling the Gaps - A Call for Comprehensive Analysis of Extracellular Matrix of the Glial Scar in Region- and Injury-Specific Contexts." <i>Front Cell Neurosci</i> <b>14</b>:32; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32153367 32153367]; doi: [https://dx.doi.org/10.3389/fncel.2020.00032 10.3389/fncel.2020.00032]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32153367 75]. | ||
#Coscia F, Doll S, Bech JM, Schweizer L, Mund A, Lengyel E, Lindebjerg J, Madsen GI, Moreira JMA, Mann M, (2020) "A streamlined mass spectrometry-based proteomics workflow for large scale FFPE tissue analysis." <i>J Pathol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32154592 32154592]; doi: [https://dx.doi.org/10.1002/path.5420 10.1002/path.5420]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32154592 52]. | #Coscia F, Doll S, Bech JM, Schweizer L, Mund A, Lengyel E, Lindebjerg J, Madsen GI, Moreira JMA, Mann M, (2020) "A streamlined mass spectrometry-based proteomics workflow for large scale FFPE tissue analysis." <i>J Pathol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32154592 32154592]; doi: [https://dx.doi.org/10.1002/path.5420 10.1002/path.5420]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32154592 52]. | ||
#Yin CF, Kao SC, Hsu CL, Chang YW, Cheung CHY, Huang HC, Juan HF, (2020) "Phosphoproteome Analysis Reveals Dynamic Heat Shock Protein 27 Phosphorylation in Tanshinone IIA-Induced Cell Death." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32154729 32154729]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00836 10.1021/acs.jproteome.9b00836]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32154729 168]. | #Yin CF, Kao SC, Hsu CL, Chang YW, Cheung CHY, Huang HC, Juan HF, (2020) "Phosphoproteome Analysis Reveals Dynamic Heat Shock Protein 27 Phosphorylation in Tanshinone IIA-Induced Cell Death." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32154729 32154729]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00836 10.1021/acs.jproteome.9b00836]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32154729 168]. | ||
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#Wegrzyn AB, Herzog K, Gerding A, Kwiatkowski M, Wolters JC, Dolga AM, van Lint AEM, Wanders RJA, Waterham HR, Bakker BM, (2020) "Fibroblast-specific genome-scale modelling predicts an imbalance in amino acid metabolism in Refsum disease." <i>FEBS J</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32160399 32160399]; doi: [https://dx.doi.org/10.1111/febs.15292 10.1111/febs.15292]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32160399 71]. | #Wegrzyn AB, Herzog K, Gerding A, Kwiatkowski M, Wolters JC, Dolga AM, van Lint AEM, Wanders RJA, Waterham HR, Bakker BM, (2020) "Fibroblast-specific genome-scale modelling predicts an imbalance in amino acid metabolism in Refsum disease." <i>FEBS J</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32160399 32160399]; doi: [https://dx.doi.org/10.1111/febs.15292 10.1111/febs.15292]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32160399 71]. | ||
#Chen L, Shi H, Koftori D, Sekine T, Nicastri A, Ternette N, Bowness P, (2020) "Identification of an unconventional sub-peptidome bound to the Behçet's disease - associated HLA-B*51:01 that is regulated by endoplasmic reticulum aminopeptidase 1 (ERAP1)." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32161166 32161166]; doi: [https://dx.doi.org/10.1074/mcp.RA119.001617 10.1074/mcp.RA119.001617]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32161166 11]. | #Chen L, Shi H, Koftori D, Sekine T, Nicastri A, Ternette N, Bowness P, (2020) "Identification of an unconventional sub-peptidome bound to the Behçet's disease - associated HLA-B*51:01 that is regulated by endoplasmic reticulum aminopeptidase 1 (ERAP1)." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32161166 32161166]; doi: [https://dx.doi.org/10.1074/mcp.RA119.001617 10.1074/mcp.RA119.001617]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32161166 11]. | ||
+ | #Tanaka A, Zhou Y, Shia J, Ginty F, Ogawa M, Klimstra DS, Hendrickson RC, Wang JY, Roehrl MH, (2020) "Prolyl 4-hydroxylase alpha 1 protein expression risk-stratifies early stage colorectal cancer." <i>Oncotarget</i> <b>11</b>(8):813–824; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32166002 32166002]; doi: [https://dx.doi.org/10.18632/oncotarget.27491 10.18632/oncotarget.27491]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32166002 44]. | ||
#Carnesecchi J, Sigismondo G, Domsch K, Baader CEP, Rafiee MR, Krijgsveld J, Lohmann I, (2020) "Multi-level and lineage-specific interactomes of the Hox transcription factor Ubx contribute to its functional specificity." <i>Nat Commun</i> <b>11</b>(1):1388; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32170121 32170121]; doi: [https://dx.doi.org/10.1038/s41467-020-15223-x 10.1038/s41467-020-15223-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32170121 36]. | #Carnesecchi J, Sigismondo G, Domsch K, Baader CEP, Rafiee MR, Krijgsveld J, Lohmann I, (2020) "Multi-level and lineage-specific interactomes of the Hox transcription factor Ubx contribute to its functional specificity." <i>Nat Commun</i> <b>11</b>(1):1388; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32170121 32170121]; doi: [https://dx.doi.org/10.1038/s41467-020-15223-x 10.1038/s41467-020-15223-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32170121 36]. | ||
#Aasebø E, Berven FS, Bartaula-Brevik S, Stokowy T, Hovland R, Vaudel M, Døskeland SO, McCormack E, Batth TS, Olsen JV, Bruserud Ø, Selheim F, Hernandez-Valladares M, (2020) "Proteome and Phosphoproteome Changes Associated with Prognosis in Acute Myeloid Leukemia." <i>Cancers (Basel)</i> <b>12</b>(3):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32192169 32192169]; doi: [https://dx.doi.org/10.3390/cancers12030709 10.3390/cancers12030709]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32192169 214]. | #Aasebø E, Berven FS, Bartaula-Brevik S, Stokowy T, Hovland R, Vaudel M, Døskeland SO, McCormack E, Batth TS, Olsen JV, Bruserud Ø, Selheim F, Hernandez-Valladares M, (2020) "Proteome and Phosphoproteome Changes Associated with Prognosis in Acute Myeloid Leukemia." <i>Cancers (Basel)</i> <b>12</b>(3):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32192169 32192169]; doi: [https://dx.doi.org/10.3390/cancers12030709 10.3390/cancers12030709]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32192169 214]. | ||
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#Morishita Y, Kabil O, Young KZ, Kellogg AP, Chang A, Arvan P, (2020) "Thyrocyte cell survival and adaptation to chronic endoplasmic reticulum stress due to misfolded thyroglobulin." <i>J Biol Chem</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32241916 32241916]; doi: [https://dx.doi.org/10.1074/jbc.RA120.012656 10.1074/jbc.RA120.012656]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32241916 1]. | #Morishita Y, Kabil O, Young KZ, Kellogg AP, Chang A, Arvan P, (2020) "Thyrocyte cell survival and adaptation to chronic endoplasmic reticulum stress due to misfolded thyroglobulin." <i>J Biol Chem</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32241916 32241916]; doi: [https://dx.doi.org/10.1074/jbc.RA120.012656 10.1074/jbc.RA120.012656]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32241916 1]. | ||
#Mizukami H, Hathway B, Procopio N, (2020) "Aquatic Decomposition of Mammalian Corpses: A Forensic Proteomic Approach." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32242669 32242669]; doi: [https://dx.doi.org/10.1021/acs.jproteome.0c00060 10.1021/acs.jproteome.0c00060]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32242669 22]. | #Mizukami H, Hathway B, Procopio N, (2020) "Aquatic Decomposition of Mammalian Corpses: A Forensic Proteomic Approach." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32242669 32242669]; doi: [https://dx.doi.org/10.1021/acs.jproteome.0c00060 10.1021/acs.jproteome.0c00060]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32242669 22]. | ||
+ | #Ölander M, Wiśniewski JR, Artursson P, (2020) "Cell-type-resolved proteomic analysis of the human liver." <i>Liver Int</i> <b>40</b>(7):1770–1780; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32243721 32243721]; doi: [https://dx.doi.org/10.1111/liv.14452 10.1111/liv.14452]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32243721 24]. | ||
#Xu G, Fromholt SE, Chakrabarty P, Zhu F, Liu X, Pace MC, Koh J, Golde TE, Levites Y, Lewis J, Borchelt DR, (2020) "Diversity in Aβ deposit morphology and secondary proteome insolubility across models of Alzheimer-type amyloidosis." <i>Acta Neuropathol Commun</i> <b>8</b>(1):43; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32252825 32252825]; doi: [https://dx.doi.org/10.1186/s40478-020-00911-y 10.1186/s40478-020-00911-y]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32252825 57]. | #Xu G, Fromholt SE, Chakrabarty P, Zhu F, Liu X, Pace MC, Koh J, Golde TE, Levites Y, Lewis J, Borchelt DR, (2020) "Diversity in Aβ deposit morphology and secondary proteome insolubility across models of Alzheimer-type amyloidosis." <i>Acta Neuropathol Commun</i> <b>8</b>(1):43; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32252825 32252825]; doi: [https://dx.doi.org/10.1186/s40478-020-00911-y 10.1186/s40478-020-00911-y]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32252825 57]. | ||
#Carter SP, Moran AL, Matallanas D, McManus GJ, Blacque OE, Kennedy BN, (2020) "Genetic Deletion of Zebrafish Rab28 Causes Defective Outer Segment Shedding, but Not Retinal Degeneration." <i>Front Cell Dev Biol</i> <b>8</b>:136; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32258030 32258030]; doi: [https://dx.doi.org/10.3389/fcell.2020.00136 10.3389/fcell.2020.00136]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32258030 12]. | #Carter SP, Moran AL, Matallanas D, McManus GJ, Blacque OE, Kennedy BN, (2020) "Genetic Deletion of Zebrafish Rab28 Causes Defective Outer Segment Shedding, but Not Retinal Degeneration." <i>Front Cell Dev Biol</i> <b>8</b>:136; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32258030 32258030]; doi: [https://dx.doi.org/10.3389/fcell.2020.00136 10.3389/fcell.2020.00136]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32258030 12]. | ||
+ | #Guérit D, Marie P, Morel A, Maurin J, Verollet C, Raynaud-Messina B, Urbach S, Blangy A, (2020) "Primary myeloid cell proteomics and transcriptomics: importance of β-tubulin isotypes for osteoclast function." <i>J Cell Sci</i> <b>133</b>(10):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32265273 32265273]; doi: [https://dx.doi.org/10.1242/jcs.239772 10.1242/jcs.239772]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32265273 9]. | ||
#Djomehri SI, Gonzalez ME, da Veiga Leprevost F, Tekula SR, Chang HY, White MJ, Cimino-Mathews A, Burman B, Basrur V, Argani P, Nesvizhskii AI, Kleer CG, (2020) "Quantitative proteomic landscape of metaplastic breast carcinoma pathological subtypes and their relationship to triple-negative tumors." <i>Nat Commun</i> <b>11</b>(1):1723; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32265444 32265444]; doi: [https://dx.doi.org/10.1038/s41467-020-15283-z 10.1038/s41467-020-15283-z]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32265444 4]. | #Djomehri SI, Gonzalez ME, da Veiga Leprevost F, Tekula SR, Chang HY, White MJ, Cimino-Mathews A, Burman B, Basrur V, Argani P, Nesvizhskii AI, Kleer CG, (2020) "Quantitative proteomic landscape of metaplastic breast carcinoma pathological subtypes and their relationship to triple-negative tumors." <i>Nat Commun</i> <b>11</b>(1):1723; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32265444 32265444]; doi: [https://dx.doi.org/10.1038/s41467-020-15283-z 10.1038/s41467-020-15283-z]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32265444 4]. | ||
#Busso CS, Guidry JJ, Gonzalez JJ, Zorba V, Son LS, Winsauer PJ, Walvekar RR, (2020) "A comprehensive analysis of sialolith proteins and the clinical implications." <i>Clin Proteomics</i> <b>17</b>:12; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32265614 32265614]; doi: [https://dx.doi.org/10.1186/s12014-020-09275-w 10.1186/s12014-020-09275-w]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32265614 1]. | #Busso CS, Guidry JJ, Gonzalez JJ, Zorba V, Son LS, Winsauer PJ, Walvekar RR, (2020) "A comprehensive analysis of sialolith proteins and the clinical implications." <i>Clin Proteomics</i> <b>17</b>:12; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32265614 32265614]; doi: [https://dx.doi.org/10.1186/s12014-020-09275-w 10.1186/s12014-020-09275-w]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32265614 1]. | ||
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#Hoesl C, Zanuttigh E, Fröhlich T, Philippou-Massier J, Krebs S, Blum H, Dahlhoff M, (2020) "The secretome of skin cancer cells activates the mTOR/MYC pathway in healthy keratinocytes and induces tumorigenic properties." <i>Biochim Biophys Acta Mol Cell Res</i> <b>1867</b>(8):118717; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32283126 32283126]; doi: [https://dx.doi.org/10.1016/j.bbamcr.2020.118717 10.1016/j.bbamcr.2020.118717]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32283126 12]. | #Hoesl C, Zanuttigh E, Fröhlich T, Philippou-Massier J, Krebs S, Blum H, Dahlhoff M, (2020) "The secretome of skin cancer cells activates the mTOR/MYC pathway in healthy keratinocytes and induces tumorigenic properties." <i>Biochim Biophys Acta Mol Cell Res</i> <b>1867</b>(8):118717; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32283126 32283126]; doi: [https://dx.doi.org/10.1016/j.bbamcr.2020.118717 10.1016/j.bbamcr.2020.118717]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32283126 12]. | ||
#Jarzab A, Kurzawa N, Hopf T, Moerch M, Zecha J, Leijten N, Bian Y, Musiol E, Maschberger M, Stoehr G, Becher I, Daly C, Samaras P, Mergner J, Spanier B, Angelov A, Werner T, Bantscheff M, Wilhelm M, Klingenspor M, Lemeer S, Liebl W, Hahne H, Savitski MM, Kuster B, (2020) "Meltome atlas-thermal proteome stability across the tree of life." <i>Nat Methods</i> <b>17</b>(5):495–503; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32284610 32284610]; doi: [https://dx.doi.org/10.1038/s41592-020-0801-4 10.1038/s41592-020-0801-4]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32284610 31]. | #Jarzab A, Kurzawa N, Hopf T, Moerch M, Zecha J, Leijten N, Bian Y, Musiol E, Maschberger M, Stoehr G, Becher I, Daly C, Samaras P, Mergner J, Spanier B, Angelov A, Werner T, Bantscheff M, Wilhelm M, Klingenspor M, Lemeer S, Liebl W, Hahne H, Savitski MM, Kuster B, (2020) "Meltome atlas-thermal proteome stability across the tree of life." <i>Nat Methods</i> <b>17</b>(5):495–503; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32284610 32284610]; doi: [https://dx.doi.org/10.1038/s41592-020-0801-4 10.1038/s41592-020-0801-4]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32284610 31]. | ||
+ | #Lee S, Zhao L, Rojas C, Bateman NW, Yao H, Lara OD, Celestino J, Morgan MB, Nguyen TV, Conrads KA, Rangel KM, Dood RL, Hajek RA, Fawcett GL, Chu RA, Wilson K, Loffredo JL, Viollet C, Jazaeri AA, Dalgard CL, Mao X, Song X, Zhou M, Hood BL, Banskota N, Wilkerson MD, Te J, Soltis AR, Roman K, Dunn A, Cordover D, Eterovic AK, Liu J, Burks JK, Baggerly KA, Fleming ND, Lu KH, Westin SN, Coleman RL, Mills GB, Casablanca Y, Zhang J, Conrads TP, Maxwell GL, Futreal PA, Sood AK, (2020) "Molecular Analysis of Clinically Defined Subsets of High-Grade Serous Ovarian Cancer." <i>Cell Rep</i> <b>31</b>(2):107502; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32294438 32294438]; doi: [https://dx.doi.org/10.1016/j.celrep.2020.03.066 10.1016/j.celrep.2020.03.066]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32294438 11]. | ||
+ | #Podvin S, Jones A, Liu Q, Aulston B, Ransom L, Ames J, Shen G, Lietz CB, Jiang Z, O'Donoghue AJ, Winston C, Ikezu T, Rissman RA, Yuan S, Hook V, (2020) "Dysregulation of Exosome Cargo by Mutant Tau Expressed in Human-induced Pluripotent Stem Cell (iPSC) Neurons Revealed by Proteomics Analyses." <i>Mol Cell Proteomics</i> <b>19</b>(6):1017–1034; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32295833 32295833]; doi: [https://dx.doi.org/10.1074/mcp.RA120.002079 10.1074/mcp.RA120.002079]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32295833 13]. | ||
#Goebel T, Mausbach S, Tuermer A, Eltahir H, Winter D, Gieselmann V, Thelen M, (2020) "Proteaphagy in mammalian cells can function independent of ATG5/ATG7." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32299840 32299840]; doi: [https://dx.doi.org/10.1074/mcp.RA120.001983 10.1074/mcp.RA120.001983]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32299840 149]. | #Goebel T, Mausbach S, Tuermer A, Eltahir H, Winter D, Gieselmann V, Thelen M, (2020) "Proteaphagy in mammalian cells can function independent of ATG5/ATG7." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32299840 32299840]; doi: [https://dx.doi.org/10.1074/mcp.RA120.001983 10.1074/mcp.RA120.001983]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32299840 149]. | ||
#Pancholi S, Ribas R, Simigdala N, Schuster E, Nikitorowicz-Buniak J, Ressa A, Gao Q, Leal MF, Bhamra A, Thornhill A, Morisset L, Montaudon E, Sourd L, Fitzpatrick M, Altelaar M, Johnston SR, Marangoni E, Dowsett M, Martin LA, (2020) "Tumour kinome re-wiring governs resistance to palbociclib in oestrogen receptor positive breast cancers, highlighting new therapeutic modalities." <i>Oncogene</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32307447 32307447]; doi: [https://dx.doi.org/10.1038/s41388-020-1284-6 10.1038/s41388-020-1284-6]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32307447 36]. | #Pancholi S, Ribas R, Simigdala N, Schuster E, Nikitorowicz-Buniak J, Ressa A, Gao Q, Leal MF, Bhamra A, Thornhill A, Morisset L, Montaudon E, Sourd L, Fitzpatrick M, Altelaar M, Johnston SR, Marangoni E, Dowsett M, Martin LA, (2020) "Tumour kinome re-wiring governs resistance to palbociclib in oestrogen receptor positive breast cancers, highlighting new therapeutic modalities." <i>Oncogene</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32307447 32307447]; doi: [https://dx.doi.org/10.1038/s41388-020-1284-6 10.1038/s41388-020-1284-6]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32307447 36]. | ||
#Chen Z, Wang C, Lei C, Feng X, Li C, Jung SY, Qin J, Chen J, (2020) "Phosphoproteomics Analysis Reveals a Potential Role of CHK1 in Regulation of Innate Immunity through IRF3." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32314919 32314919]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00829 10.1021/acs.jproteome.9b00829]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32314919 48]. | #Chen Z, Wang C, Lei C, Feng X, Li C, Jung SY, Qin J, Chen J, (2020) "Phosphoproteomics Analysis Reveals a Potential Role of CHK1 in Regulation of Innate Immunity through IRF3." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32314919 32314919]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00829 10.1021/acs.jproteome.9b00829]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32314919 48]. | ||
#Pourhaghighi R, Ash PEA, Phanse S, Goebels F, Hu LZM, Chen S, Zhang Y, Wierbowski SD, Boudeau S, Moutaoufik MT, Malty RH, Malolepsza E, Tsafou K, Nathan A, Cromar G, Guo H, Abdullatif AA, Apicco DJ, Becker LA, Gitler AD, Pulst SM, Youssef A, Hekman R, Havugimana PC, White CA, Blum BC, Ratti A, Bryant CD, Parkinson J, Lage K, Babu M, Yu H, Bader GD, Wolozin B, Emili A, (2020) "BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain." <i>Cell Syst</i> <b>10</b>(4):333–350.e14; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32325033 32325033]; doi: [https://dx.doi.org/10.1016/j.cels.2020.03.003 10.1016/j.cels.2020.03.003]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32325033 578]. | #Pourhaghighi R, Ash PEA, Phanse S, Goebels F, Hu LZM, Chen S, Zhang Y, Wierbowski SD, Boudeau S, Moutaoufik MT, Malty RH, Malolepsza E, Tsafou K, Nathan A, Cromar G, Guo H, Abdullatif AA, Apicco DJ, Becker LA, Gitler AD, Pulst SM, Youssef A, Hekman R, Havugimana PC, White CA, Blum BC, Ratti A, Bryant CD, Parkinson J, Lage K, Babu M, Yu H, Bader GD, Wolozin B, Emili A, (2020) "BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain." <i>Cell Syst</i> <b>10</b>(4):333–350.e14; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32325033 32325033]; doi: [https://dx.doi.org/10.1016/j.cels.2020.03.003 10.1016/j.cels.2020.03.003]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32325033 578]. | ||
+ | #Bach-Pages M, Homma F, Kourelis J, Kaschani F, Mohammed S, Kaiser M, van der Hoorn RAL, Castello A, Preston GM, (2020) "Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method." <i>Biomolecules</i> <b>10</b>(4):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32344669 32344669]; doi: [https://dx.doi.org/10.3390/biom10040661 10.3390/biom10040661]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32344669 8]. | ||
+ | #Hégarat N, Crncec A, Suarez Peredo Rodriguez MF, Echegaray Iturra F, Gu Y, Busby O, Lang PF, Barr AR, Bakal C, Kanemaki MT, Lamond AI, Novak B, Ly T, Hochegger H, (2020) "Cyclin A triggers Mitosis either via the Greatwall kinase pathway or Cyclin B." <i>EMBO J</i> <b>39</b>(11):e104419; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32350921 32350921]; doi: [https://dx.doi.org/10.15252/embj.2020104419 10.15252/embj.2020104419]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32350921 2]. | ||
#Ojalill M, Virtanen N, Rappu P, Siljamäki E, Taimen P, Heino J, (2020) "Interaction between prostate cancer cells and prostate fibroblasts promotes accumulation and proteolytic processing of basement membrane proteins." <i>Prostate</i> <b>80</b>(9):715–726; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32364250 32364250]; doi: [https://dx.doi.org/10.1002/pros.23985 10.1002/pros.23985]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32364250 18]. | #Ojalill M, Virtanen N, Rappu P, Siljamäki E, Taimen P, Heino J, (2020) "Interaction between prostate cancer cells and prostate fibroblasts promotes accumulation and proteolytic processing of basement membrane proteins." <i>Prostate</i> <b>80</b>(9):715–726; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32364250 32364250]; doi: [https://dx.doi.org/10.1002/pros.23985 10.1002/pros.23985]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32364250 18]. | ||
#Bekes K, Mitulović G, Meißner N, Resch U, Gruber R, (2020) "Saliva proteomic patterns in patients with molar incisor hypomineralization." <i>Sci Rep</i> <b>10</b>(1):7560; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32371984 32371984]; doi: [https://dx.doi.org/10.1038/s41598-020-64614-z 10.1038/s41598-020-64614-z]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32371984 10]. | #Bekes K, Mitulović G, Meißner N, Resch U, Gruber R, (2020) "Saliva proteomic patterns in patients with molar incisor hypomineralization." <i>Sci Rep</i> <b>10</b>(1):7560; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32371984 32371984]; doi: [https://dx.doi.org/10.1038/s41598-020-64614-z 10.1038/s41598-020-64614-z]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32371984 10]. | ||
+ | # () "" <i></i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/ ]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32381088 1]. | ||
+ | #Pandey K, Mifsud NA, Lim Kam Sian TCC, Ayala R, Ternette N, Ramarathinam SH, Purcell AW, (2020) "In-depth mining of the immunopeptidome of an acute myeloid leukemia cell line using complementary ligand enrichment and data acquisition strategies." <i>Mol Immunol</i> <b>123</b>:7–17; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32387766 32387766]; doi: [https://dx.doi.org/10.1016/j.molimm.2020.04.008 10.1016/j.molimm.2020.04.008]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32387766 140]. | ||
+ | #Chu F, Mason KE, Anex DS, Jones AD, Hart BR, (2020) "Proteomic Characterization of Damaged Single Hairs Recovered after an Explosion for Protein-Based Human Identification." <i>J Proteome Res</i> <b>19</b>(8):3088–3099; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32394717 32394717]; doi: [https://dx.doi.org/10.1021/acs.jproteome.0c00102 10.1021/acs.jproteome.0c00102]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32394717 8]. | ||
+ | #Iliuk A, Wu X, Li L, Sun J, Hadisurya M, Boris RS, Tao WA, (2020) "Plasma-Derived Extracellular Vesicle Phosphoproteomics through Chemical Affinity Purification." <i>J Proteome Res</i> <b>19</b>(7):2563–2574; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32396726 32396726]; doi: [https://dx.doi.org/10.1021/acs.jproteome.0c00151 10.1021/acs.jproteome.0c00151]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32396726 34]. | ||
+ | #Rolfes V, Ribeiro LS, Hawwari I, Böttcher L, Rosero N, Maasewerd S, Santos MLS, Próchnicki T, Silva CMS, Wanderley CWS, Rothe M, Schmidt SV, Stunden HJ, Bertheloot D, Rivas MN, Fontes CJ, Carvalho LH, Cunha FQ, Latz E, Arditi M, Franklin BS, (2020) "Platelets Fuel the Inflammasome Activation of Innate Immune Cells." <i>Cell Rep</i> <b>31</b>(6):107615; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32402278 32402278]; doi: [https://dx.doi.org/10.1016/j.celrep.2020.107615 10.1016/j.celrep.2020.107615]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32402278 14]. | ||
+ | #Beumer J, Puschhof J, Bauzá-Martinez J, Martínez-Silgado A, Elmentaite R, James KR, Ross A, Hendriks D, Artegiani B, Busslinger GA, Ponsioen B, Andersson-Rolf A, Saftien A, Boot C, Kretzschmar K, Geurts MH, Bar-Ephraim YE, Pleguezuelos-Manzano C, Post Y, Begthel H, van der Linden F, Lopez-Iglesias C, van de Wetering WJ, van der Linden R, Peters PJ, Heck AJR, Goedhart J, Snippert H, Zilbauer M, Teichmann SA, Wu W, Clevers H, (2020) "High-Resolution mRNA and Secretome Atlas of Human Enteroendocrine Cells." <i>Cell</i> <b>181</b>(6):1291–1306.e19; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32407674 32407674]; doi: [https://dx.doi.org/10.1016/j.cell.2020.04.036 10.1016/j.cell.2020.04.036]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32407674 33]. | ||
+ | #Cunningham DL, Sarhan AR, Creese AJ, Larkins KPB, Zhao H, Ferguson HR, Brookes K, Marusiak AA, Cooper HJ, Heath JK, (2020) "Differential responses to kinase inhibition in FGFR2-addicted triple negative breast cancer cells: a quantitative phosphoproteomics study." <i>Sci Rep</i> <b>10</b>(1):7950; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32409632 32409632]; doi: [https://dx.doi.org/10.1038/s41598-020-64534-y 10.1038/s41598-020-64534-y]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32409632 377]. | ||
+ | #van Geelen L, Kaschani F, Sazzadeh SS, Adeniyi ET, Meier D, Proksch P, Pfeffer K, Kaiser M, Ioerger TR, Kalscheuer R, (2020) "Natural brominated phenoxyphenols kill persistent and biofilm-incorporated cells of MRSA and other pathogenic bacteria." <i>Appl Microbiol Biotechnol</i> <b>104</b>(13):5985–5998; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32418125 32418125]; doi: [https://dx.doi.org/10.1007/s00253-020-10654-4 10.1007/s00253-020-10654-4]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32418125 12]. | ||
+ | #de la Fuente AG, Queiroz RML, Ghosh T, McMurran CE, Cubillos JF, Bergles DE, Fitzgerald DC, Jones CA, Lilley KS, Glover CP, Franklin RJM, (2020) "Changes in the Oligodendrocyte Progenitor Cell Proteome with Ageing." <i>Mol Cell Proteomics</i> <b>19</b>(8):1281–1302; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32434922 32434922]; doi: [https://dx.doi.org/10.1074/mcp.RA120.002102 10.1074/mcp.RA120.002102]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32434922 4]. | ||
+ | #Cervantes M, Forné I, Ranjit S, Gratton E, Imhof A, Sassone-Corsi P, (2020) "BMAL1 Associates with NOP58 in the Nucleolus and Contributes to Pre-rRNA Processing." <i>iScience</i> <b>23</b>(6):101151; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32450515 32450515]; doi: [https://dx.doi.org/10.1016/j.isci.2020.101151 10.1016/j.isci.2020.101151]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32450515 24]. | ||
+ | #Van JAD, Clotet-Freixas S, Hauschild AC, Batruch I, Jurisica I, Elia Y, Mahmud FH, Sochett E, Diamandis EP, Scholey JW, Konvalinka A, (2020) "Urinary proteomics links keratan sulfate degradation and lysosomal enzymes to early type 1 diabetes." <i>PLoS One</i> <b>15</b>(5):e0233639; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32453760 32453760]; doi: [https://dx.doi.org/10.1371/journal.pone.0233639 10.1371/journal.pone.0233639]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32453760 90]. | ||
+ | #Wolf EJ, Miles A, Lee ES, Nabeel-Shah S, Greenblatt JF, Palazzo AF, Tropepe V, Emili A, (2020) "MKRN2 Physically Interacts with GLE1 to Regulate mRNA Export and Zebrafish Retinal Development." <i>Cell Rep</i> <b>31</b>(8):107693; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32460013 32460013]; doi: [https://dx.doi.org/10.1016/j.celrep.2020.107693 10.1016/j.celrep.2020.107693]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32460013 42]. | ||
+ | #Gouveia D, Grenga L, Gaillard JC, Gallais F, Bellanger L, Pible O, Armengaud J, (2020) "Shortlisting SARS-CoV-2 Peptides for Targeted Studies from Experimental Data-Dependent Acquisition Tandem Mass Spectrometry Data." <i>Proteomics</i> <b>20</b>(14):e2000107; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32462744 32462744]; doi: [https://dx.doi.org/10.1002/pmic.202000107 10.1002/pmic.202000107]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32462744 10]. | ||
+ | #Lim Y, Lee JY, Ha SJ, Yu S, Shin JK, Kim HC, (2020) "Proteome-wide identification of arginine methylation in colorectal cancer tissues from patients." <i>Proteome Sci</i> <b>18</b>:6; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32467672 32467672]; doi: [https://dx.doi.org/10.1186/s12953-020-00162-8 10.1186/s12953-020-00162-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32467672 4]. | ||
+ | #Wong PP, Muñoz-Félix JM, Hijazi M, Kim H, Robinson SD, De Luxán-Delgado B, Rodríguez-Hernández I, Maiques O, Meng YM, Meng Q, Bodrug N, Dukinfield MS, Reynolds LE, Elia G, Clear A, Harwood C, Wang Y, Campbell JJ, Singh R, Zhang P, Schall TJ, Matchett KP, Henderson NC, Szlosarek PW, Dreger SA, Smith S, Jones JL, Gribben JG, Cutillas PR, Meier P, Sanz-Moreno V, Hodivala-Dilke KM, (2020) "Cancer Burden Is Controlled by Mural Cell-β3-Integrin Regulated Crosstalk with Tumor Cells." <i>Cell</i> <b>181</b>(6):1346–1363.e21; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32473126 32473126]; doi: [https://dx.doi.org/10.1016/j.cell.2020.02.003 10.1016/j.cell.2020.02.003]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32473126 18]. | ||
+ | #Macron C, Lavigne R, Núñez Galindo A, Affolter M, Pineau C, Dayon L, (2020) "Exploration of human cerebrospinal fluid: A large proteome dataset revealed by trapped ion mobility time-of-flight mass spectrometry." <i>Data Brief</i> <b>31</b>:105704; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32478154 32478154]; doi: [https://dx.doi.org/10.1016/j.dib.2020.105704 10.1016/j.dib.2020.105704]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32478154 1]. | ||
+ | # () "" <i></i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/ ]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32485593 67]. | ||
+ | #Couté Y, Kraut A, Zimmermann C, Büscher N, Hesse AM, Bruley C, De Andrea M, Wangen C, Hahn F, Marschall M, Plachter B, (2020) "Mass Spectrometry-Based Characterization of the Virion Proteome, Phosphoproteome, and Associated Kinase Activity of Human Cytomegalovirus." <i>Microorganisms</i> <b>8</b>(6):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32486127 32486127]; doi: [https://dx.doi.org/10.3390/microorganisms8060820 10.3390/microorganisms8060820]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32486127 6]. | ||
+ | #Goecker ZC, Salemi MR, Karim N, Phinney BS, Rice RH, Parker GJ, (2020) "Optimal processing for proteomic genotyping of single human hairs." <i>Forensic Sci Int Genet</i> <b>47</b>:102314; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32505640 32505640]; doi: [https://dx.doi.org/10.1016/j.fsigen.2020.102314 10.1016/j.fsigen.2020.102314]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32505640 130]. | ||
+ | #Ramesha KP, Mol P, Kannegundla U, Thota LN, Gopalakrishnan L, Rana E, Azharuddin N, Mangalaparthi KK, Kumar M, Dey G, Patil A, Saravanan K, Behera SK, Jeyakumar S, Kumaresan A, Kataktalware MA, Prasad TSK, (2020) "Deep Proteome Profiling of Semen of Indian Indigenous Malnad Gidda (<i>Bos indicus</i>) Cattle." <i>J Proteome Res</i> <b>19</b>(8):3364–3376; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32508098 32508098]; doi: [https://dx.doi.org/10.1021/acs.jproteome.0c00237 10.1021/acs.jproteome.0c00237]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32508098 129]. | ||
+ | #Sebastian Monasor L, Müller SA, Colombo AV, Tanrioever G, König J, Roth S, Liesz A, Berghofer A, Piechotta A, Prestel M, Saito T, Saido TC, Herms J, Willem M, Haass C, Lichtenthaler SF, Tahirovic S, (2020) "Fibrillar Aβ triggers microglial proteome alterations and dysfunction in Alzheimer mouse models." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32510331 32510331]; doi: [https://dx.doi.org/10.7554/eLife.54083 10.7554/eLife.54083]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32510331 24]. | ||
+ | #Sembler-Møller ML, Belstrøm D, Locht H, Pedersen AML, (2020) "Proteomics of saliva, plasma, and salivary gland tissue in Sjögren's syndrome and non-Sjögren patients identify novel biomarker candidates." <i>J Proteomics</i> <b>225</b>:103877; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32540407 32540407]; doi: [https://dx.doi.org/10.1016/j.jprot.2020.103877 10.1016/j.jprot.2020.103877]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32540407 158]. | ||
#Bansal P, Madlung J, Schaaf K, Macek B, Bono F, (2020) "An interaction network of RNA-binding proteins involved in Drosophila oogenesis." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32554711 32554711]; doi: [https://dx.doi.org/10.1074/mcp.RA119.001912 10.1074/mcp.RA119.001912]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32554711 24]. | #Bansal P, Madlung J, Schaaf K, Macek B, Bono F, (2020) "An interaction network of RNA-binding proteins involved in Drosophila oogenesis." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32554711 32554711]; doi: [https://dx.doi.org/10.1074/mcp.RA119.001912 10.1074/mcp.RA119.001912]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32554711 24]. | ||
+ | #Thouvenel L, Prevot G, Chiaradia L, Parra J, Mouton-Barbosa E, Locard-Paulet M, Marcoux J, Tropis M, Burlet-Schiltz O, Daffé M, Guilhot C, Etienne G, Chalut C, (2020) "The final assembly of trehalose polyphleates takes place within the outer layer of the mycobacterial cell envelope." <i>J Biol Chem</i> <b>295</b>(32):11184–11194; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32554804 32554804]; doi: [https://dx.doi.org/10.1074/jbc.RA120.013299 10.1074/jbc.RA120.013299]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32554804 64]. | ||
+ | #Müller JB, Geyer PE, Colaço AR, Treit PV, Strauss MT, Oroshi M, Doll S, Virreira Winter S, Bader JM, Köhler N, Theis F, Santos A, Mann M, (2020) "The proteome landscape of the kingdoms of life." <i>Nature</i> <b>582</b>(7813):592–596; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32555458 32555458]; doi: [https://dx.doi.org/10.1038/s41586-020-2402-x 10.1038/s41586-020-2402-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32555458 6]. | ||
+ | #Petereit J, Duncan O, Murcha MW, Fenske R, Cincu E, Cahn J, Pružinská A, Ivanova A, Kollipara L, Wortelkamp S, Sickmann A, Lee J, Lister R, Millar AH, Huang S, (2020) "Mitochondrial CLPP2 Assists Coordination and Homeostasis of Respiratory Complexes." <i>Plant Physiol</i> <b>184</b>(1):148–164; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32571844 32571844]; doi: [https://dx.doi.org/10.1104/pp.20.00136 10.1104/pp.20.00136]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32571844 29]. | ||
+ | #Martin NA, Hyrlov KH, Elkjaer ML, Thygesen EK, Wlodarczyk A, Elbaek KJ, Aboo C, Okarmus J, Benedikz E, Reynolds R, Hegedus Z, Stensballe A, Svenningsen ÅF, Owens T, Illes Z, (2020) "Absence of miRNA-146a Differentially Alters Microglia Function and Proteome." <i>Front Immunol</i> <b>11</b>:1110; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32582192 32582192]; doi: [https://dx.doi.org/10.3389/fimmu.2020.01110 10.3389/fimmu.2020.01110]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32582192 44]. | ||
+ | #Silva JM, Wippel HH, Santos MDM, Verissimo DCA, Santos RM, Nogueira FCS, Passos GAR, Sprengel SL, Borba LAB, Carvalho PC, Fischer JSDG, (2020) "Proteomics pinpoints alterations in grade I meningiomas of male versus female patients." <i>Sci Rep</i> <b>10</b>(1):10335; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32587372 32587372]; doi: [https://dx.doi.org/10.1038/s41598-020-67113-3 10.1038/s41598-020-67113-3]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32587372 24]. | ||
#Zecha J, Lee CY, Bayer FP, Meng C, Grass V, Zerweck J, Schnatbaum K, Michler T, Pichlmair A, Ludwig C, Kuster B, (2020) "Data, reagents, assays and merits of proteomics for SARS-CoV-2 research and testing." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32591346 32591346]; doi: [https://dx.doi.org/10.1074/mcp.RA120.002164 10.1074/mcp.RA120.002164]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32591346 96]. | #Zecha J, Lee CY, Bayer FP, Meng C, Grass V, Zerweck J, Schnatbaum K, Michler T, Pichlmair A, Ludwig C, Kuster B, (2020) "Data, reagents, assays and merits of proteomics for SARS-CoV-2 research and testing." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32591346 32591346]; doi: [https://dx.doi.org/10.1074/mcp.RA120.002164 10.1074/mcp.RA120.002164]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32591346 96]. | ||
+ | #Zhang Y, Yu M, Dong J, Wu Y, Tian W, (2020) "Identification of Novel Adipokines through Proteomic Profiling of Small Extracellular Vesicles Derived from Adipose Tissue." <i>J Proteome Res</i> <b>19</b>(8):3130–3142; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32597661 32597661]; doi: [https://dx.doi.org/10.1021/acs.jproteome.0c00131 10.1021/acs.jproteome.0c00131]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32597661 6]. | ||
+ | #Ma J, Liu M, Wang Y, Xin C, Zhang H, Chen S, Zheng X, Zhang X, Xiao F, Yang S, (2020) "Quantitative proteomics analysis of young and elderly skin with DIA mass spectrometry reveals new skin aging-related proteins." <i>Aging (Albany NY)</i> <b>12</b>(13):13529–13554; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32602849 32602849]; doi: [https://dx.doi.org/10.18632/aging.103461 10.18632/aging.103461]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32602849 10]. | ||
+ | #Sudaryatma PE, Saito A, Mekata H, Kubo M, Fahkrajang W, Okabayashi T, (2020) "Bovine Respiratory Syncytial Virus Decreased Pasteurella multocida Adherence by Downregulating the Expression of Intercellular Adhesion Molecule-1 on the Surface of Upper Respiratory Epithelial Cells." <i>Vet Microbiol</i> <b>246</b>:108748; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32605748 32605748]; doi: [https://dx.doi.org/10.1016/j.vetmic.2020.108748 10.1016/j.vetmic.2020.108748]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32605748 18]. | ||
+ | #Kenny HC, Tascher G, Ziemianin A, Rudwill F, Zahariev A, Chery I, Gauquelin-Koch G, Barielle MP, Heer M, Blanc S, O'Gorman DJ, Bertile F, (2020) "Effectiveness of Resistive Vibration Exercise and Whey Protein Supplementation Plus Alkaline Salt on the Skeletal Muscle Proteome Following 21 Days of Bed Rest in Healthy Males." <i>J Proteome Res</i> <b>19</b>(8):3438–3451; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32609523 32609523]; doi: [https://dx.doi.org/10.1021/acs.jproteome.0c00256 10.1021/acs.jproteome.0c00256]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32609523 58]. | ||
+ | #Fenech EJ, Lari F, Charles PD, Fischer R, Laétitia-Thézénas M, Bagola K, Paton AW, Paton JC, Gyrd-Hansen M, Kessler BM, Christianson JC, (2020) "Interaction mapping of endoplasmic reticulum ubiquitin ligases identifies modulators of innate immune signalling." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32614325 32614325]; doi: [https://dx.doi.org/10.7554/eLife.57306 10.7554/eLife.57306]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32614325 136]. | ||
+ | #Locard-Paulet M, Voisinne G, Froment C, Goncalves Menoita M, Ounoughene Y, Girard L, Gregoire C, Mori D, Martinez M, Luche H, Garin J, Malissen M, Burlet-Schiltz O, Malissen B, Gonzalez de Peredo A, Roncagalli R, (2020) "LymphoAtlas: a dynamic and integrated phosphoproteomic resource of TCR signaling in primary T cells reveals ITSN2 as a regulator of effector functions." <i>Mol Syst Biol</i> <b>16</b>(7):e9524; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32618424 32618424]; doi: [https://dx.doi.org/10.15252/msb.20209524 10.15252/msb.20209524]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32618424 108]. | ||
+ | #Oh S, Yeom J, Cho HJ, Kim JH, Yoon SJ, Kim H, Sa JK, Ju S, Lee H, Oh MJ, Lee W, Kwon Y, Li H, Choi S, Han JH, Chang JH, Choi E, Kim J, Her NG, Kim SH, Kang SG, Paek E, Nam DH, Lee C, Kim HS, (2020) "Integrated pharmaco-proteogenomics defines two subgroups in isocitrate dehydrogenase wild-type glioblastoma with prognostic and therapeutic opportunities." <i>Nat Commun</i> <b>11</b>(1):3288; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32620753 32620753]; doi: [https://dx.doi.org/10.1038/s41467-020-17139-y 10.1038/s41467-020-17139-y]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32620753 18]. | ||
+ | # () "" <i></i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/ ]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32623905 456]. | ||
+ | #Wood AJ, Vassallo AM, Ruchaud-Sparagano MH, Scott J, Zinnato C, Gonzalez-Tejedo C, Kishore K, D'Santos CS, Simpson AJ, Menon DK, Summers C, Chilvers ER, Okkenhaug K, Morris AC, (2020) "C5a impairs phagosomal maturation in the neutrophil through phosphoproteomic remodeling." <i>JCI Insight</i> <b>5</b>(15):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32634128 32634128]; doi: [https://dx.doi.org/10.1172/jci.insight.137029 10.1172/jci.insight.137029]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32634128 30]. | ||
+ | #Zhang Y, Liu Y, Jia Y, Zhao Y, Ma C, Bao X, Meng X, Dou W, Wang X, Ge W, (2020) "Proteomic profiling of sclerotic hippocampus revealed dysregulated packaging of vesicular neurotransmitters in temporal lobe epilepsy." <i>Epilepsy Res</i> <b>166</b>:106412; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32668389 32668389]; doi: [https://dx.doi.org/10.1016/j.eplepsyres.2020.106412 10.1016/j.eplepsyres.2020.106412]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32668389 1]. | ||
+ | #Xiao Y, Clima R, Busch J, Rabien A, Kilic E, Villegas SL, Timmermann B, Attimonelli M, Jung K, Meierhofer D, (2020) "Decreased Mitochondrial DNA Content Drives OXPHOS Dysregulation in Chromophobe Renal Cell Carcinoma." <i>Cancer Res</i> <b>80</b>(18):3830–3840; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32694149 32694149]; doi: [https://dx.doi.org/10.1158/0008-5472.CAN-20-0754 10.1158/0008-5472.CAN-20-0754]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32694149 72]. | ||
+ | #Gouveia D, Miotello G, Gallais F, Gaillard JC, Debroas S, Bellanger L, Lavigne JP, Sotto A, Grenga L, Pible O, Armengaud J, (2020) "Proteotyping SARS-CoV-2 Virus from Nasopharyngeal Swabs: A Proof-of-Concept Focused on a 3 Min Mass Spectrometry Window." <i>J Proteome Res</i> <b>19</b>(11):4407–4416; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32697082 32697082]; doi: [https://dx.doi.org/10.1021/acs.jproteome.0c00535 10.1021/acs.jproteome.0c00535]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32697082 14]. | ||
#Chen Q, Samidurai A, Thompson J, Hu Y, Das A, Willard B, Lesnefsky EJ, (2020) "Endoplasmic reticulum stress-mediated mitochondrial dysfunction in aged hearts." <i>Biochim Biophys Acta Mol Basis Dis</i> <b>1866</b>(11):165899; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32698045 32698045]; doi: [https://dx.doi.org/10.1016/j.bbadis.2020.165899 10.1016/j.bbadis.2020.165899]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32698045 18]. | #Chen Q, Samidurai A, Thompson J, Hu Y, Das A, Willard B, Lesnefsky EJ, (2020) "Endoplasmic reticulum stress-mediated mitochondrial dysfunction in aged hearts." <i>Biochim Biophys Acta Mol Basis Dis</i> <b>1866</b>(11):165899; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32698045 32698045]; doi: [https://dx.doi.org/10.1016/j.bbadis.2020.165899 10.1016/j.bbadis.2020.165899]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32698045 18]. | ||
+ | #Cao W, Lee H, Wu W, Zaman A, McCorkle S, Yan M, Chen J, Xing Q, Sinnott-Armstrong N, Xu H, Sailani MR, Tang W, Cui Y, Liu J, Guan H, Lv P, Sun X, Sun L, Han P, Lou Y, Chang J, Wang J, Gao Y, Guo J, Schenk G, Shain AH, Biddle FG, Collisson E, Snyder M, Bivona TG, (2020) "Multi-faceted epigenetic dysregulation of gene expression promotes esophageal squamous cell carcinoma." <i>Nat Commun</i> <b>11</b>(1):3675; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32699215 32699215]; doi: [https://dx.doi.org/10.1038/s41467-020-17227-z 10.1038/s41467-020-17227-z]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32699215 3]. | ||
+ | #Blume JE, Manning WC, Troiano G, Hornburg D, Figa M, Hesterberg L, Platt TL, Zhao X, Cuaresma RA, Everley PA, Ko M, Liou H, Mahoney M, Ferdosi S, Elgierari EM, Stolarczyk C, Tangeysh B, Xia H, Benz R, Siddiqui A, Carr SA, Ma P, Langer R, Farias V, Farokhzad OC, (2020) "Rapid, deep and precise profiling of the plasma proteome with multi-nanoparticle protein corona." <i>Nat Commun</i> <b>11</b>(1):3662; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32699280 32699280]; doi: [https://dx.doi.org/10.1038/s41467-020-17033-7 10.1038/s41467-020-17033-7]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32699280 114]. | ||
+ | #Buljan M, Ciuffa R, van Drogen A, Vichalkovski A, Mehnert M, Rosenberger G, Lee S, Varjosalo M, Pernas LE, Spegg V, Snijder B, Aebersold R, Gstaiger M, (2020) "Kinase Interaction Network Expands Functional and Disease Roles of Human Kinases." <i>Mol Cell</i> <b>79</b>(3):504–520.e9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32707033 32707033]; doi: [https://dx.doi.org/10.1016/j.molcel.2020.07.001 10.1016/j.molcel.2020.07.001]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32707033 730]. | ||
+ | #Osthues T, Zimmer B, Rimola V, Klann K, Schilling K, Mathoor P, Angioni C, Weigert A, Geisslinger G, Münch C, Scholich K, Sisignano M, (2020) "The Lipid Receptor G2A (GPR132) Mediates Macrophage Migration in Nerve Injury-Induced Neuropathic Pain." <i>Cells</i> <b>9</b>(7):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32708184 32708184]; doi: [https://dx.doi.org/10.3390/cells9071740 10.3390/cells9071740]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32708184 1]. | ||
+ | #Pathak KV, McGilvrey MI, Hu CK, Garcia-Mansfield K, Lewandoski K, Eftekhari Z, Yuan YC, Zenhausern F, Menashi E, Pirrotte P, (2020) "Molecular Profiling of Innate Immune Response Mechanisms in Ventilator-associated Pneumonia." <i>Mol Cell Proteomics</i> <b>19</b>(10):1688–1705; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32709677 32709677]; doi: [https://dx.doi.org/10.1074/mcp.RA120.002207 10.1074/mcp.RA120.002207]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32709677 85]. | ||
+ | #Cheng YC, Ku WC, Tseng TT, Wu CP, Li M, Lee SC, (2020) "Anchorage independence altered vasculogenic phenotype of melanoma cells through downregulation in aminopeptidase N /syndecan-1/integrin β4 axis." <i>Aging (Albany NY)</i> <b>12</b>(17):16803–16819; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32756007 32756007]; doi: [https://dx.doi.org/10.18632/aging.103425 10.18632/aging.103425]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32756007 80]. | ||
+ | #Perino M, van Mierlo G, Loh C, Wardle SMT, Zijlmans DW, Marks H, Veenstra GJC, (2020) "Two Functional Axes of Feedback-Enforced PRC2 Recruitment in Mouse Embryonic Stem Cells." <i>Stem Cell Reports</i> <b>15</b>(6):1287–1300; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32763159 32763159]; doi: [https://dx.doi.org/10.1016/j.stemcr.2020.07.007 10.1016/j.stemcr.2020.07.007]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32763159 11]. | ||
+ | #Tiwari A, Tashiro K, Dixit A, Soni A, Vogel K, Hall B, Shafqat I, Slaughter J, Param N, Le A, Saunders E, Paithane U, Garcia G, Campos AR, Zettervall J, Carlson M, Starr TK, Marahrens Y, Deshpande AJ, Commisso C, Provenzano PP, Bagchi A, (2020) "Loss of HIF1A From Pancreatic Cancer Cells Increases Expression of PPP1R1B and Degradation of p53 to Promote Invasion and Metastasis." <i>Gastroenterology</i> <b>159</b>(5):1882–1897.e5; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32768595 32768595]; doi: [https://dx.doi.org/10.1053/j.gastro.2020.07.046 10.1053/j.gastro.2020.07.046]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32768595 6]. | ||
+ | #Mirauta BA, Seaton DD, Bensaddek D, Brenes A, Bonder MJ, Kilpinen H, HipSci Consortium., Stegle O, Lamond AI, (2020) "Population-scale proteome variation in human induced pluripotent stem cells." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32773033 32773033]; doi: [https://dx.doi.org/10.7554/eLife.57390 10.7554/eLife.57390]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32773033 16]. | ||
+ | #Ripmeester EGJ, Caron MMJ, van den Akker GGH, Surtel DAM, Cremers A, Balaskas P, Dyer P, Housmans BAC, Chabronova A, Smagul A, Fang Y, van Rhijn LW, Peffers MJ, Welting TJM, (2020) "Impaired chondrocyte U3 snoRNA expression in osteoarthritis impacts the chondrocyte protein translation apparatus." <i>Sci Rep</i> <b>10</b>(1):13426; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32778764 32778764]; doi: [https://dx.doi.org/10.1038/s41598-020-70453-9 10.1038/s41598-020-70453-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32778764 6]. | ||
#Steiner G, Marban-Doran C, Langer J, Pimenova T, Duran-Pacheco G, Sauter D, Langenkamp A, Solier C, Singer T, Bray-French K, Ducret A, (2020) "Enabling Routine MHC-II-Associated Peptide Proteomics for Risk Assessment of Drug-Induced Immunogenicity." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32786679 32786679]; doi: [https://dx.doi.org/10.1021/acs.jproteome.0c00309 10.1021/acs.jproteome.0c00309]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32786679 162]. | #Steiner G, Marban-Doran C, Langer J, Pimenova T, Duran-Pacheco G, Sauter D, Langenkamp A, Solier C, Singer T, Bray-French K, Ducret A, (2020) "Enabling Routine MHC-II-Associated Peptide Proteomics for Risk Assessment of Drug-Induced Immunogenicity." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32786679 32786679]; doi: [https://dx.doi.org/10.1021/acs.jproteome.0c00309 10.1021/acs.jproteome.0c00309]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32786679 162]. | ||
+ | #D'Alessandro A, Thomas T, Dzieciatkowska M, Hill RC, Francis RO, Hudson KE, Zimring JC, Hod EA, Spitalnik SL, Hansen KC, (2020) "Serum Proteomics in COVID-19 Patients: Altered Coagulation and Complement Status as a Function of IL-6 Level." <i>J Proteome Res</i> <b>19</b>(11):4417–4427; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32786691 32786691]; doi: [https://dx.doi.org/10.1021/acs.jproteome.0c00365 10.1021/acs.jproteome.0c00365]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32786691 49]. | ||
+ | #Wang Y, Tian Y, Liu X, Dong J, Wang L, Ye M, (2020) "A New Workflow for the Analysis of Phosphosite Occupancy in Paired Samples by Integration of Proteomics and Phosphoproteomics Data Sets." <i>J Proteome Res</i> <b>19</b>(9):3807–3816; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32786891 32786891]; doi: [https://dx.doi.org/10.1021/acs.jproteome.0c00345 10.1021/acs.jproteome.0c00345]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32786891 42]. | ||
+ | #Hoshino A, Kim HS, Bojmar L, Gyan KE, Cioffi M, Hernandez J, Zambirinis CP, Rodrigues G, Molina H, Heissel S, Mark MT, Steiner L, Benito-Martin A, Lucotti S, Di Giannatale A, Offer K, Nakajima M, Williams C, Nogués L, Pelissier Vatter FA, Hashimoto A, Davies AE, Freitas D, Kenific CM, Ararso Y, Buehring W, Lauritzen P, Ogitani Y, Sugiura K, Takahashi N, Alečković M, Bailey KA, Jolissant JS, Wang H, Harris A, Schaeffer LM, García-Santos G, Posner Z, Balachandran VP, Khakoo Y, Raju GP, Scherz A, Sagi I, Scherz-Shouval R, Yarden Y, Oren M, Malladi M, Petriccione M, De Braganca KC, Donzelli M, Fischer C, Vitolano S, Wright GP, Ganshaw L, Marrano M, Ahmed A, DeStefano J, Danzer E, Roehrl MHA, Lacayo NJ, Vincent TC, Weiser MR, Brady MS, Meyers PA, Wexler LH, Ambati SR, Chou AJ, Slotkin EK, Modak S, Roberts SS, Basu EM, Diolaiti D, Krantz BA, Cardoso F, Simpson AL, Berger M, Rudin CM, Simeone DM, Jain M, Ghajar CM, Batra SK, Stanger BZ, Bui J, Brown KA, Rajasekhar VK, Healey JH, de Sousa M, Kramer K, Sheth S, Baisch J, Pascual V, Heaton TE, La Quaglia MP, Pisapia DJ, Schwartz R, Zhang H, Liu Y, Shukla A, Blavier L, DeClerck YA, LaBarge M, Bissell MJ, Caffrey TC, Grandgenett PM, Hollingsworth MA, Bromberg J, Costa-Silva B, Peinado H, Kang Y, Garcia BA, O'Reilly EM, Kelsen D, Trippett TM, Jones DR, Matei IR, Jarnagin WR, Lyden D, (2020) "Extracellular Vesicle and Particle Biomarkers Define Multiple Human Cancers." <i>Cell</i> <b>182</b>(4):1044–1061.e18; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32795414 32795414]; doi: [https://dx.doi.org/10.1016/j.cell.2020.07.009 10.1016/j.cell.2020.07.009]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32795414 562]. | ||
#Kirak O, Ke E, Yang KY, Schwarz A, Plate L, Nham A, Abadejos JR, Valencia A, Wiseman RL, Lui KO, Ku M, (2020) "Premature Activation of Immune Transcription Programs in Autoimmune-Predisposed Mouse Embryonic Stem Cells and Blastocysts." <i>Int J Mol Sci</i> <b>21</b>(16):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32796510 32796510]; doi: [https://dx.doi.org/10.3390/ijms21165743 10.3390/ijms21165743]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32796510 1]. | #Kirak O, Ke E, Yang KY, Schwarz A, Plate L, Nham A, Abadejos JR, Valencia A, Wiseman RL, Lui KO, Ku M, (2020) "Premature Activation of Immune Transcription Programs in Autoimmune-Predisposed Mouse Embryonic Stem Cells and Blastocysts." <i>Int J Mol Sci</i> <b>21</b>(16):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32796510 32796510]; doi: [https://dx.doi.org/10.3390/ijms21165743 10.3390/ijms21165743]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32796510 1]. | ||
+ | #Drummond E, Pires G, MacMurray C, Askenazi M, Nayak S, Bourdon M, Safar J, Ueberheide B, Wisniewski T, (2020) "Phosphorylated tau interactome in the human Alzheimer's disease brain." <i>Brain</i> <b>143</b>(9):2803–2817; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32812023 32812023]; doi: [https://dx.doi.org/10.1093/brain/awaa223 10.1093/brain/awaa223]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32812023 27]. | ||
+ | #Pang CNI, Ballouz S, Weissberger D, Thibaut LM, Hamey JJ, Gillis J, Wilkins MR, Hart-Smith G, (2020) "Analytical Guidelines for co-fractionation Mass Spectrometry Obtained through Global Profiling of Gold Standard <i>Saccharomyces cerevisiae</i> Protein Complexes." <i>Mol Cell Proteomics</i> <b>19</b>(11):1876–1895; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32817346 32817346]; doi: [https://dx.doi.org/10.1074/mcp.RA120.002154 10.1074/mcp.RA120.002154]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32817346 72]. | ||
+ | #Maffioli E, Galli A, Nonnis S, Marku A, Negri A, Piazzoni C, Milani P, Lenardi C, Perego C, Tedeschi G, (2020) "Proteomic Analysis Reveals a Mitochondrial Remodeling of βTC3 Cells in Response to Nanotopography." <i>Front Cell Dev Biol</i> <b>8</b>:508; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32850772 32850772]; doi: [https://dx.doi.org/10.3389/fcell.2020.00508 10.3389/fcell.2020.00508]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32850772 9]. | ||
+ | #Werner AC, Weckbach LT, Salvermoser M, Pitter B, Cao J, Maier-Begandt D, Forné I, Schnittler HJ, Walzog B, Montanez E, (2020) "Coronin 1B Controls Endothelial Actin Dynamics at Cell-Cell Junctions and Is Required for Endothelial Network Assembly." <i>Front Cell Dev Biol</i> <b>8</b>:708; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32850828 32850828]; doi: [https://dx.doi.org/10.3389/fcell.2020.00708 10.3389/fcell.2020.00708]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32850828 8]. | ||
+ | #Mantini G, Vallés AM, Le Large TYS, Capula M, Funel N, Pham TV, Piersma SR, Kazemier G, Bijlsma MF, Giovannetti E, Jimenez CR, (2020) "Co-expression analysis of pancreatic cancer proteome reveals biology and prognostic biomarkers." <i>Cell Oncol (Dordr)</i> <b>43</b>(6):1147–1159; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32860207 32860207]; doi: [https://dx.doi.org/10.1007/s13402-020-00548-y 10.1007/s13402-020-00548-y]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32860207 100]. | ||
+ | #Chang YY, Stévenin V, Duchateau M, Giai Gianetto Q, Hourdel V, Rodrigues CD, Matondo M, Reiling N, Enninga J, (2020) "Shigella hijacks the exocyst to cluster macropinosomes for efficient vacuolar escape." <i>PLoS Pathog</i> <b>16</b>(8):e1008822; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32866204 32866204]; doi: [https://dx.doi.org/10.1371/journal.ppat.1008822 10.1371/journal.ppat.1008822]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32866204 18]. | ||
+ | #Simats A, Ramiro L, García-Berrocoso T, Briansó F, Gonzalo R, Martín L, Sabé A, Gill N, Penalba A, Colomé N, Sánchez A, Canals F, Bustamante A, Rosell A, Montaner J, (2020) "A Mouse Brain-based Multi-omics Integrative Approach Reveals Potential Blood Biomarkers for Ischemic Stroke." <i>Mol Cell Proteomics</i> <b>19</b>(12):1921–1936; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32868372 32868372]; doi: [https://dx.doi.org/10.1074/mcp.RA120.002283 10.1074/mcp.RA120.002283]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32868372 120]. | ||
+ | #Holder J, Mohammed S, Barr FA, (2020) "Ordered dephosphorylation initiated by the selective proteolysis of cyclin B drives mitotic exit." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32869743 32869743]; doi: [https://dx.doi.org/10.7554/eLife.59885 10.7554/eLife.59885]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32869743 240]. | ||
+ | #Kooij R, Liu S, Sapmaz A, Xin BT, Janssen GMC, van Veelen PA, Ovaa H, Dijke PT, Geurink PP, (2020) "Small-Molecule Activity-Based Probe for Monitoring Ubiquitin C-Terminal Hydrolase L1 (UCHL1) Activity in Live Cells and Zebrafish Embryos." <i>J Am Chem Soc</i> <b>142</b>(39):16825–16841; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32886496 32886496]; doi: [https://dx.doi.org/10.1021/jacs.0c07726 10.1021/jacs.0c07726]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32886496 24]. | ||
+ | #Wang B, Hao J, Pan N, Wang Z, Chen Y, Wan C, (2021) "Identification and analysis of small proteins and short open reading frame encoded peptides in Hep3B cell." <i>J Proteomics</i> <b>230</b>:103965; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32891891 32891891]; doi: [https://dx.doi.org/10.1016/j.jprot.2020.103965 10.1016/j.jprot.2020.103965]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32891891 164]. | ||
+ | #Starkl P, Watzenboeck ML, Popov LM, Zahalka S, Hladik A, Lakovits K, Radhouani M, Haschemi A, Marichal T, Reber LL, Gaudenzio N, Sibilano R, Stulik L, Fontaine F, Mueller AC, Amieva MR, Galli SJ, Knapp S, (2020) "IgE Effector Mechanisms, in Concert with Mast Cells, Contribute to Acquired Host Defense against Staphylococcusaureus." <i>Immunity</i> <b>53</b>(4):793–804.e9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32910906 32910906]; doi: [https://dx.doi.org/10.1016/j.immuni.2020.08.002 10.1016/j.immuni.2020.08.002]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32910906 12]. | ||
+ | #van Gelder CAGH, Penning R, Veth TS, Catsburg LAE, Hoogenraad CC, MacGillavry HD, Altelaar M, (2020) "Temporal Quantitative Proteomics of mGluR-induced Protein Translation and Phosphorylation in Neurons." <i>Mol Cell Proteomics</i> <b>19</b>(12):1952–1968; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32912969 32912969]; doi: [https://dx.doi.org/10.1074/mcp.RA120.002199 10.1074/mcp.RA120.002199]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32912969 20]. | ||
+ | #Jiang L, Wang M, Lin S, Jian R, Li X, Chan J, Dong G, Fang H, Robinson AE, GTEx Consortium., Snyder MP, (2020) "A Quantitative Proteome Map of the Human Body." <i>Cell</i> <b>183</b>(1):269–283.e19; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32916130 32916130]; doi: [https://dx.doi.org/10.1016/j.cell.2020.08.036 10.1016/j.cell.2020.08.036]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32916130 35]. | ||
+ | # () "" <i></i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/ ]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32920902 30]. | ||
+ | #Uyy E, Suica VI, Boteanu RM, Safciuc F, Cerveanu-Hogas A, Ivan L, Stavaru C, Simionescu M, Antohe F, (2020) "Diabetic nephropathy associates with deregulation of enzymes involved in kidney sulphur metabolism." <i>J Cell Mol Med</i> <b>24</b>(20):12131–12140; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32935914 32935914]; doi: [https://dx.doi.org/10.1111/jcmm.15855 10.1111/jcmm.15855]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32935914 95]. | ||
+ | #Faridi P, Woods K, Ostrouska S, Deceneux C, Aranha R, Duscharla D, Wong SQ, Chen W, Ramarathinam SH, Lim Kam Sian TCC, Croft NP, Li C, Ayala R, Cebon JS, Purcell AW, Schittenhelm RB, Behren A, (2020) "Spliced Peptides and Cytokine-Driven Changes in the Immunopeptidome of Melanoma." <i>Cancer Immunol Res</i> <b>8</b>(10):1322–1334; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32938616 32938616]; doi: [https://dx.doi.org/10.1158/2326-6066.CIR-19-0894 10.1158/2326-6066.CIR-19-0894]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32938616 108]. | ||
+ | #Lindhout FW, Kooistra R, Portegies S, Herstel LJ, Stucchi R, Snoek BL, Altelaar AM, MacGillavry HD, Wierenga CJ, Hoogenraad CC, (2020) "Quantitative mapping of transcriptome and proteome dynamics during polarization of human iPSC-derived neurons." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32940601 32940601]; doi: [https://dx.doi.org/10.7554/eLife.58124 10.7554/eLife.58124]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32940601 1]. | ||
+ | #O'Neill JS, Hoyle NP, Robertson JB, Edgar RS, Beale AD, Peak-Chew SY, Day J, Costa ASH, Frezza C, Causton HC, (2020) "Eukaryotic cell biology is temporally coordinated to support the energetic demands of protein homeostasis." <i>Nat Commun</i> <b>11</b>(1):4706; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32943618 32943618]; doi: [https://dx.doi.org/10.1038/s41467-020-18330-x 10.1038/s41467-020-18330-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32943618 84]. | ||
+ | #Lee-Law PY, Olaizola P, Caballero-Camino FJ, Izquierdo-Sanchez L, Rodrigues PM, Santos-Laso A, Azkargorta M, Elortza F, Martinez-Chantar ML, Perugorria MJ, Aspichueta P, Marzioni M, LaRusso NF, Bujanda L, Drenth JPH, Banales JM, (2021) "Targeting UBC9-mediated protein hyper-SUMOylation in cystic cholangiocytes halts polycystic liver disease in experimental models." <i>J Hepatol</i> <b>74</b>(2):394–406; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32950589 32950589]; doi: [https://dx.doi.org/10.1016/j.jhep.2020.09.010 10.1016/j.jhep.2020.09.010]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32950589 49]. | ||
+ | # () "" <i></i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/ ]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32963033 133]. | ||
+ | #Liu JJ, Chiu YT, Chen C, Huang P, Mann M, Liu-Chen LY, (2020) "Pharmacological and phosphoproteomic approaches to roles of protein kinase C in kappa opioid receptor-mediated effects in mice." <i>Neuropharmacology</i> <b>181</b>:108324; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32976891 32976891]; doi: [https://dx.doi.org/10.1016/j.neuropharm.2020.108324 10.1016/j.neuropharm.2020.108324]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32976891 67]. | ||
+ | #Schumacher N, Yan K, Gandraß M, Müller M, Krisp C, Häsler R, Carambia A, Nofer JR, Bernardes JP, Khouja M, Thomsen I, Chalupsky K, Bolik J, Hölscher C, Wunderlich T, Herkel J, Rosenstiel P, Schramm C, Schlüter H, Renné T, Mittrücker HW, Rose-John S, Schmidt-Arras D, (2021) "Cell-autonomous hepatocyte-specific GP130 signaling is sufficient to trigger a robust innate immune response in mice." <i>J Hepatol</i> <b>74</b>(2):407–418; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32987028 32987028]; doi: [https://dx.doi.org/10.1016/j.jhep.2020.09.021 10.1016/j.jhep.2020.09.021]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32987028 1]. | ||
+ | #Adhikari B, Bozilovic J, Diebold M, Schwarz JD, Hofstetter J, Schröder M, Wanior M, Narain A, Vogt M, Dudvarski Stankovic N, Baluapuri A, Schönemann L, Eing L, Bhandare P, Kuster B, Schlosser A, Heinzlmeir S, Sotriffer C, Knapp S, Wolf E, (2020) "PROTAC-mediated degradation reveals a non-catalytic function of AURORA-A kinase." <i>Nat Chem Biol</i> <b>16</b>(11):1179–1188; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32989298 32989298]; doi: [https://dx.doi.org/10.1038/s41589-020-00652-y 10.1038/s41589-020-00652-y]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32989298 93]. | ||
+ | #Bassal M, Abukhalaf M, Majovsky P, Thieme D, Herr T, Ayash M, Tabassum N, Al Shweiki MR, Proksch C, Hmedat A, Ziegler J, Lee J, Neumann S, Hoehenwarter W, (2020) "Reshaping of the Arabidopsis thaliana Proteome Landscape and Co-regulation of Proteins in Development and Immunity." <i>Mol Plant</i> <b>13</b>(12):1709–1732; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33007468 33007468]; doi: [https://dx.doi.org/10.1016/j.molp.2020.09.024 10.1016/j.molp.2020.09.024]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33007468 86]. | ||
+ | #Gabaev I, Williamson JC, Crozier TWM, Schulz TF, Lehner PJ, (2020) "Quantitative Proteomics Analysis of Lytic KSHV Infection in Human Endothelial Cells Reveals Targets of Viral Immune Modulation." <i>Cell Rep</i> <b>33</b>(2):108249; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33053346 33053346]; doi: [https://dx.doi.org/10.1016/j.celrep.2020.108249 10.1016/j.celrep.2020.108249]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33053346 1]. | ||
+ | # () "" <i></i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/ ]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33060197 198]. | ||
+ | #Leng L, Cao R, Ma J, Mou D, Zhu Y, Li W, Lv L, Gao D, Zhang S, Gong F, Zhao L, Qiu B, Xiang H, Hu Z, Feng Y, Dai Y, Zhao J, Wu Z, Li H, Zhong W, (2020) "Pathological features of COVID-19-associated lung injury: a preliminary proteomics report based on clinical samples." <i>Signal Transduct Target Ther</i> <b>5</b>(1):240; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33060566 33060566]; doi: [https://dx.doi.org/10.1038/s41392-020-00355-9 10.1038/s41392-020-00355-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33060566 13]. | ||
+ | #Demmers LC, Kretzschmar K, Van Hoeck A, Bar-Epraïm YE, van den Toorn HWP, Koomen M, van Son G, van Gorp J, Pronk A, Smakman N, Cuppen E, Clevers H, Heck AJR, Wu W, (2020) "Single-cell derived tumor organoids display diversity in HLA class I peptide presentation." <i>Nat Commun</i> <b>11</b>(1):5338; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33087703 33087703]; doi: [https://dx.doi.org/10.1038/s41467-020-19142-9 10.1038/s41467-020-19142-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33087703 24]. | ||
+ | #Wang J, Jelcic I, Mühlenbruch L, Haunerdinger V, Toussaint NC, Zhao Y, Cruciani C, Faigle W, Naghavian R, Foege M, Binder TMC, Eiermann T, Opitz L, Fuentes-Font L, Reynolds R, Kwok WW, Nguyen JT, Lee JH, Lutterotti A, Münz C, Rammensee HG, Hauri-Hohl M, Sospedra M, Stevanovic S, Martin R, (2020) "HLA-DR15 Molecules Jointly Shape an Autoreactive T Cell Repertoire in Multiple Sclerosis." <i>Cell</i> <b>183</b>(5):1264–1281.e20; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33091337 33091337]; doi: [https://dx.doi.org/10.1016/j.cell.2020.09.054 10.1016/j.cell.2020.09.054]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33091337 54]. | ||
+ | #Faca VM, Sanford EJ, Tieu J, Comstock W, Gupta S, Marshall S, Yu H, Smolka MB, (2020) "Maximized quantitative phosphoproteomics allows high confidence dissection of the DNA damage signaling network." <i>Sci Rep</i> <b>10</b>(1):18056; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33093574 33093574]; doi: [https://dx.doi.org/10.1038/s41598-020-74939-4 10.1038/s41598-020-74939-4]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33093574 153]. | ||
+ | #Zhao Q, Zhang Z, Li J, Xu F, Zhang B, Liu M, Liu Y, Chen H, Yang J, Zhang J, (2020) "Lysine Acetylome Study of Human Hepatocellular Carcinoma Tissues for Biomarkers and Therapeutic Targets Discovery." <i>Front Genet</i> <b>11</b>:572663; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33093847 33093847]; doi: [https://dx.doi.org/10.3389/fgene.2020.572663 10.3389/fgene.2020.572663]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33093847 1]. | ||
+ | #Ilik İA, Malszycki M, Lübke AK, Schade C, Meierhofer D, Aktaş T, (2020) "SON and SRRM2 are essential for nuclear speckle formation." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33095160 33095160]; doi: [https://dx.doi.org/10.7554/eLife.60579 10.7554/eLife.60579]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33095160 6]. | ||
+ | #Di Meo A, Sohaei D, Batruch I, Alexandrou P, Prassas I, Diamandis EP, (2021) "Proteomic Profiling of the Human Tissue and Biological Fluid Proteome." <i>J Proteome Res</i> <b>20</b>(1):444–452; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33107741 33107741]; doi: [https://dx.doi.org/10.1021/acs.jproteome.0c00502 10.1021/acs.jproteome.0c00502]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33107741 92]. | ||
+ | #Alayi TD, Tawalbeh SM, Ogundele M, Smith HR, Samsel AM, Barbieri ML, Hathout Y, (2020) "Tandem Mass Tag-Based Serum Proteome Profiling for Biomarker Discovery in Young Duchenne Muscular Dystrophy Boys." <i>ACS Omega</i> <b>5</b>(41):26504–26517; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33110978 33110978]; doi: [https://dx.doi.org/10.1021/acsomega.0c03206 10.1021/acsomega.0c03206]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33110978 72]. | ||
+ | #Gibbard E, Cochrane DR, Pors J, Negri GL, Colborne S, Cheng AS, Chow C, Farnell D, Tessier-Cloutier B, McAlpine JN, Morin GB, Schmidt D, Kommoss S, Kommoss F, Keul J, Gilks B, Huntsman DG, Hoang L, (2021) "Whole-proteome analysis of mesonephric-derived cancers describes new potential biomarkers." <i>Hum Pathol</i> <b>108</b>:1–11; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33121982 33121982]; doi: [https://dx.doi.org/10.1016/j.humpath.2020.10.005 10.1016/j.humpath.2020.10.005]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33121982 8]. | ||
+ | #Al-Majdoub ZM, Achour B, Couto N, Howard M, Elmorsi Y, Scotcher D, Alrubia S, El-Khateeb E, Vasilogianni AM, Alohali N, Neuhoff S, Schmitt L, Rostami-Hodjegan A, Barber J, (2020) "Mass spectrometry-based abundance atlas of ABC transporters in human liver, gut, kidney, brain and skin." <i>FEBS Lett</i> <b>594</b>(23):4134–4150; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33128234 33128234]; doi: [https://dx.doi.org/10.1002/1873-3468.13982 10.1002/1873-3468.13982]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33128234 146]. | ||
+ | #Dyring-Andersen B, Løvendorf MB, Coscia F, Santos A, Møller LBP, Colaço AR, Niu L, Bzorek M, Doll S, Andersen JL, Clark RA, Skov L, Teunissen MBM, Mann M, (2020) "Spatially and cell-type resolved quantitative proteomic atlas of healthy human skin." <i>Nat Commun</i> <b>11</b>(1):5587; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33154365 33154365]; doi: [https://dx.doi.org/10.1038/s41467-020-19383-8 10.1038/s41467-020-19383-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33154365 157]. | ||
+ | #Asad S, Wegler C, Ahl D, Bergström CAS, Phillipson M, Artursson P, Teleki A, (2021) "Proteomics-Informed Identification of Luminal Targets For In Situ Diagnosis of Inflammatory Bowel Disease." <i>J Pharm Sci</i> <b>110</b>(1):239–250; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33159915 33159915]; doi: [https://dx.doi.org/10.1016/j.xphs.2020.11.001 10.1016/j.xphs.2020.11.001]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33159915 132]. | ||
+ | #Chen X, Sun Y, Zhang T, Roepstorff P, Yang F, (2021) "Comprehensive Analysis of the Proteome and PTMomes of C2C12 Myoblasts Reveals that Sialylation Plays a Role in the Differentiation of Skeletal Muscle Cells." <i>J Proteome Res</i> <b>20</b>(1):222–235; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33216553 33216553]; doi: [https://dx.doi.org/10.1021/acs.jproteome.0c00353 10.1021/acs.jproteome.0c00353]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33216553 51]. | ||
+ | #Hu Z, Wang X, Li D, Cao L, Cui H, Xu G, (2021) "UFBP1, a key component in ufmylation, enhances drug sensitivity by promoting proteasomal degradation of oxidative stress-response transcription factor Nrf2." <i>Oncogene</i> <b>40</b>(3):647–662; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33219317 33219317]; doi: [https://dx.doi.org/10.1038/s41388-020-01551-1 10.1038/s41388-020-01551-1]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33219317 3]. | ||
+ | #Zaro BW, Noh JJ, Mascetti VL, Demeter J, George B, Zukowska M, Gulati GS, Sinha R, Flynn RA, Banuelos A, Zhang A, Wilkinson AC, Jackson P, Weissman IL, (2020) "Proteomic analysis of young and old mouse hematopoietic stem cells and their progenitors reveals post-transcriptional regulation in stem cells." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33236985 33236985]; doi: [https://dx.doi.org/10.7554/eLife.62210 10.7554/eLife.62210]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33236985 64]. | ||
+ | # () "" <i></i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/ ]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33266304 90]. | ||
+ | #Braun F, Rinschen M, Buchner D, Bohl K, Plagmann I, Bachurski D, Richard Späth M, Antczak P, Göbel H, Klein C, Lackmann JW, Kretz O, Puelles VG, Wahba R, Hallek M, Schermer B, Benzing T, Huber TB, Beyer A, Stippel D, Kurschat CE, Müller RU, (2020) "The proteomic landscape of small urinary extracellular vesicles during kidney transplantation." <i>J Extracell Vesicles</i> <b>10</b>(1):e12026; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33304478 33304478]; doi: [https://dx.doi.org/10.1002/jev2.12026 10.1002/jev2.12026]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33304478 89]. | ||
+ | #Bailey A, Nicholas B, Darley R, Parkinson E, Teo Y, Aleksic M, Maxwell G, Elliott T, Ardern-Jones M, Skipp P, (2021) "Characterization of the Class I MHC Peptidome Resulting From DNCB Exposure of HaCaT Cells." <i>Toxicol Sci</i> <b>180</b>(1):136–147; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33372950 33372950]; doi: [https://dx.doi.org/10.1093/toxsci/kfaa184 10.1093/toxsci/kfaa184]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33372950 35]. | ||
+ | #Tam V, Chen P, Yee A, Solis N, Klein T, Kudelko M, Sharma R, Chan WC, Overall CM, Haglund L, Sham PC, Cheah KSE, Chan D, (2020) "DIPPER, a spatiotemporal proteomics atlas of human intervertebral discs for exploring ageing and degeneration dynamics." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33382035 33382035]; doi: [https://dx.doi.org/10.7554/eLife.64940 10.7554/eLife.64940]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33382035 263]. | ||
+ | #Subbannayya Y, Haug M, Pinto SM, Mohanty V, Meås HZ, Flo TH, Prasad TSK, Kandasamy RK, (2020) "The Proteomic Landscape of Resting and Activated CD4+ T Cells Reveal Insights into Cell Differentiation and Function." <i>Int J Mol Sci</i> <b>22</b>(1):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33383959 33383959]; doi: [https://dx.doi.org/10.3390/ijms22010275 10.3390/ijms22010275]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33383959 3]. | ||
+ | #Dietze R, Hammoud MK, Gómez-Serrano M, Unger A, Bieringer T, Finkernagel F, Sokol AM, Nist A, Stiewe T, Reinartz S, Ponath V, Preußer C, von Strandmann EP, Müller-Brüsselbach S, Graumann J, Müller R, (2021) "Phosphoproteomics identify arachidonic-acid-regulated signal transduction pathways modulating macrophage functions with implications for ovarian cancer." <i>Theranostics</i> <b>11</b>(3):1377–1395; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33391540 33391540]; doi: [https://dx.doi.org/10.7150/thno.52442 10.7150/thno.52442]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33391540 63]. | ||
+ | #Khan MJ, Desaire H, Lopez OL, Kamboh MI, Robinson RAS, (2021) "Why Inclusion Matters for Alzheimer's Disease Biomarker Discovery in Plasma." <i>J Alzheimers Dis</i> <b>79</b>(3):1327–1344; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33427747 33427747]; doi: [https://dx.doi.org/10.3233/JAD-201318 10.3233/JAD-201318]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33427747 25]. | ||
+ | #Fissolo N, Matute-Blanch C, Osman M, Costa C, Pinteac R, Miró B, Sanchez A, Brito V, Dujmovic I, Voortman M, Khalil M, Borràs E, Sabidó E, Issazadeh-Navikas S, Montalban X, Comabella Lopez M, (2021) "CSF SERPINA3 Levels Are Elevated in Patients With Progressive MS." <i>Neurol Neuroimmunol Neuroinflamm</i> <b>8</b>(2):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33436375 33436375]; doi: [https://dx.doi.org/10.1212/NXI.0000000000000941 10.1212/NXI.0000000000000941]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33436375 30]. | ||
+ | #Tijms BM, Gobom J, Reus L, Jansen I, Hong S, Dobricic V, Kilpert F, Ten Kate M, Barkhof F, Tsolaki M, Verhey FRJ, Popp J, Martinez-Lage P, Vandenberghe R, Lleó A, Molinuevo JL, Engelborghs S, Bertram L, Lovestone S, Streffer J, Vos S, Bos I, Alzheimer’s Disease Neuroimaging Initiative (ADNI)., Blennow K, Scheltens P, Teunissen CE, Zetterberg H, Visser PJ, (2020) "Pathophysiological subtypes of Alzheimer's disease based on cerebrospinal fluid proteomics." <i>Brain</i> <b>143</b>(12):3776–3792; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33439986 33439986]; doi: [https://dx.doi.org/10.1093/brain/awaa325 10.1093/brain/awaa325]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33439986 50]. | ||
+ | #Prust N, van der Laarse S, van den Toorn HWP, van Sorge NM, Lemeer S, (2021) "In-Depth Characterization of the Staphylococcus aureus Phosphoproteome Reveals New Targets of Stk1." <i>Mol Cell Proteomics</i> <b>20</b>:100034; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33444734 33444734]; doi: [https://dx.doi.org/10.1074/mcp.RA120.002232 10.1074/mcp.RA120.002232]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33444734 27]. | ||
+ | #Ölander M, Wegler C, Flörkemeier I, Treyer A, Handin N, Pedersen JM, Vildhede A, Mateus A, LeCluyse EL, Urdzik J, Artursson P, (2021) "Hepatocyte size fractionation allows dissection of human liver zonation." <i>J Cell Physiol</i> <b>236</b>(8):5885–5894; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33452735 33452735]; doi: [https://dx.doi.org/10.1002/jcp.30273 10.1002/jcp.30273]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33452735 36]. | ||
+ | #Gastaldello A, Ramarathinam SH, Bailey A, Owen R, Turner S, Kontouli N, Elliott T, Skipp P, Purcell AW, Siddle HV, (2021) "The immunopeptidomes of two transmissible cancers and their host have a common, dominant peptide motif." <i>Immunology</i> <b>163</b>(2):169–184; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33460454 33460454]; doi: [https://dx.doi.org/10.1111/imm.13307 10.1111/imm.13307]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33460454 9]. | ||
+ | #Lobato-Gil S, Heidelberger JB, Maghames C, Bailly A, Brunello L, Rodriguez MS, Beli P, Xirodimas DP, (2021) "Proteome-wide identification of NEDD8 modification sites reveals distinct proteomes for canonical and atypical NEDDylation." <i>Cell Rep</i> <b>34</b>(3):108635; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33472076 33472076]; doi: [https://dx.doi.org/10.1016/j.celrep.2020.108635 10.1016/j.celrep.2020.108635]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33472076 24]. | ||
+ | #Huang KK, Huang J, Wu JKL, Lee M, Tay ST, Kumar V, Ramnarayanan K, Padmanabhan N, Xu C, Tan ALK, Chan C, Kappei D, Göke J, Tan P, (2021) "Long-read transcriptome sequencing reveals abundant promoter diversity in distinct molecular subtypes of gastric cancer." <i>Genome Biol</i> <b>22</b>(1):44; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33482911 33482911]; doi: [https://dx.doi.org/10.1186/s13059-021-02261-x 10.1186/s13059-021-02261-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33482911 80]. | ||
+ | #Osório H, Silva C, Ferreira M, Gullo I, Máximo V, Barros R, Mendonça F, Oliveira C, Carneiro F, (2021) "Proteomics Analysis of Gastric Cancer Patients with Diabetes Mellitus." <i>J Clin Med</i> <b>10</b>(3):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33494396 33494396]; doi: [https://dx.doi.org/10.3390/jcm10030407 10.3390/jcm10030407]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33494396 40]. | ||
+ | #Amer N, Taha H, Hesham D, Al-Shehaby N, Mosaab A, Soudy M, Osama A, Mahmoud N, Elayadi M, Youssef A, Elbeltagy M, Zaghloul MS, Magdeldin S, Sayed AA, El-Naggar S, (2021) "Aggresomes predict poor outcomes and implicate proteostasis in the pathogenesis of pediatric choroid plexus tumors." <i>J Neurooncol</i> <b>152</b>(1):67–78; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33501605 33501605]; doi: [https://dx.doi.org/10.1007/s11060-020-03694-3 10.1007/s11060-020-03694-3]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33501605 84]. | ||
+ | # () "" <i></i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/ ]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33503430 12]. | ||
+ | #Yang F, Liu Q, Chen Y, Ye H, Wang H, Zeng S, (2020) "Integrative Proteomic and Phosphoproteomic Analyses of Granulosa Cells During Follicular Atresia in Porcine." <i>Front Cell Dev Biol</i> <b>8</b>:624985; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33520998 33520998]; doi: [https://dx.doi.org/10.3389/fcell.2020.624985 10.3389/fcell.2020.624985]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33520998 77]. | ||
+ | #Aravamudhan S, Türk C, Bock T, Keufgens L, Nolte H, Lang F, Krishnan RK, König T, Hammerschmidt P, Schindler N, Brodesser S, Rozsivalova DH, Rugarli E, Trifunovic A, Brüning J, Langer T, Braun T, Krüger M, (2021) "Phosphoproteomics of the developing heart identifies PERM1 - An outer mitochondrial membrane protein." <i>J Mol Cell Cardiol</i> <b>154</b>:41–59; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33549681 33549681]; doi: [https://dx.doi.org/10.1016/j.yjmcc.2021.01.010 10.1016/j.yjmcc.2021.01.010]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33549681 104]. | ||
+ | #Bankar R, Suvarna K, Ghantasala S, Banerjee A, Biswas D, Choudhury M, Palanivel V, Salkar A, Verma A, Singh A, Mukherjee A, Pai MGJ, Roy J, Srivastava A, Badaya A, Agrawal S, Shrivastav O, Shastri J, Srivastava S, (2021) "Proteomic investigation reveals dominant alterations of neutrophil degranulation and mRNA translation pathways in patients with COVID-19." <i>iScience</i> <b>24</b>(3):102135; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33558857 33558857]; doi: [https://dx.doi.org/10.1016/j.isci.2021.102135 10.1016/j.isci.2021.102135]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33558857 24]. | ||
+ | #Deng L, Gupta VK, Wu Y, Pushpitha K, Chitranshi N, Gupta VB, Fitzhenry MJ, Moghaddam MZ, Karl T, Salekdeh GH, Graham SL, Haynes PA, Mirzaei M, (2021) "Mouse model of Alzheimer's disease demonstrates differential effects of early disease pathology on various brain regions." <i>Proteomics</i> <b>21</b>(7-8):e2000213; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33559908 33559908]; doi: [https://dx.doi.org/10.1002/pmic.202000213 10.1002/pmic.202000213]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33559908 4]. | ||
+ | #van Alphen C, Cucchi DGJ, Cloos J, Schelfhorst T, Henneman AA, Piersma SR, Pham TV, Knol JC, Jimenez CR, Janssen JJWM, (2021) "The influence of delay in mononuclear cell isolation on acute myeloid leukemia phosphorylation profiles." <i>J Proteomics</i> <b>238</b>:104134; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33561558 33561558]; doi: [https://dx.doi.org/10.1016/j.jprot.2021.104134 10.1016/j.jprot.2021.104134]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33561558 69]. | ||
+ | #Sukumaran A, Pladwig S, Geddes-McAlister J, (2021) "Zinc limitation in Klebsiella pneumoniae profiled by quantitative proteomics influences transcriptional regulation and cation transporter-associated capsule production." <i>BMC Microbiol</i> <b>21</b>(1):43; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33568055 33568055]; doi: [https://dx.doi.org/10.1186/s12866-021-02091-8 10.1186/s12866-021-02091-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33568055 16]. | ||
+ | #Kong S, Ding L, Fan C, Li Y, Wang C, Wang K, Xu W, Shi X, Wu Q, Wang F, (2021) "Global analysis of lysine acetylome reveals the potential role of CCL18 in non-small cell lung cancer." <i>Proteomics</i> <b>21</b>(7-8):e2000144; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33570763 33570763]; doi: [https://dx.doi.org/10.1002/pmic.202000144 10.1002/pmic.202000144]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33570763 17]. | ||
+ | #Sivakova B, Jurcik J, Lukacova V, Selicky T, Cipakova I, Barath P, Cipak L, (2021) "Label-Free Quantitative Phosphoproteomics of the Fission Yeast <i>Schizosaccharomyces pombe</i> Using Strong Anion Exchange- and Porous Graphitic Carbon-Based Fractionation Strategies." <i>Int J Mol Sci</i> <b>22</b>(4):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33572424 33572424]; doi: [https://dx.doi.org/10.3390/ijms22041747 10.3390/ijms22041747]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33572424 68]. | ||
+ | #Pluska L, Jarosch E, Zauber H, Kniss A, Waltho A, Bagola K, von Delbrück M, Löhr F, Schulman BA, Selbach M, Dötsch V, Sommer T, (2021) "The UBA domain of conjugating enzyme Ubc1/Ube2K facilitates assembly of K48/K63-branched ubiquitin chains." <i>EMBO J</i> <b>40</b>(6):e106094; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33576509 33576509]; doi: [https://dx.doi.org/10.15252/embj.2020106094 10.15252/embj.2020106094]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33576509 2]. | ||
+ | #Bala K, Cuellar A, Herren AW, Boyadjiev SA, (2021) "Identification of differentially expressed proteins between fused and open sutures in sagittal nonsyndromic craniosynostosis during suture development by quantitative proteomic analysis." <i>Proteomics Clin Appl</i> <b>15</b>(2-3):e2000031; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33580899 33580899]; doi: [https://dx.doi.org/10.1002/prca.202000031 10.1002/prca.202000031]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33580899 3]. | ||
+ | #Silbern I, Pan KT, Fiosins M, Bonn S, Rizzoli SO, Fornasiero EF, Urlaub H, Jahn R, (2021) "Protein Phosphorylation in Depolarized Synaptosomes: Dissecting Primary Effects of Calcium from Synaptic Vesicle Cycling." <i>Mol Cell Proteomics</i> <b>20</b>:100061; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33582301 33582301]; doi: [https://dx.doi.org/10.1016/j.mcpro.2021.100061 10.1016/j.mcpro.2021.100061]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33582301 180]. | ||
+ | #Dudek M, Angelucci C, Pathiranage D, Wang P, Mallikarjun V, Lawless C, Swift J, Kadler KE, Boot-Handford RP, Hoyland JA, Lamande SR, Bateman JF, Meng QJ, (2021) "Circadian time series proteomics reveals daily dynamics in cartilage physiology." <i>Osteoarthritis Cartilage</i> <b>29</b>(5):739–749; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33610821 33610821]; doi: [https://dx.doi.org/10.1016/j.joca.2021.02.008 10.1016/j.joca.2021.02.008]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33610821 72]. | ||
+ | #Pietrowska M, Zebrowska A, Gawin M, Marczak L, Sharma P, Mondal S, Mika J, Polańska J, Ferrone S, Kirkwood JM, Widlak P, Whiteside TL, (2021) "Proteomic profile of melanoma cell-derived small extracellular vesicles in patients' plasma: a potential correlate of melanoma progression." <i>J Extracell Vesicles</i> <b>10</b>(4):e12063; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33613873 33613873]; doi: [https://dx.doi.org/10.1002/jev2.12063 10.1002/jev2.12063]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33613873 30]. | ||
+ | #Yuan S, Liao G, Zhang M, Zhu Y, Wang K, Xiao W, Jia C, Dong M, Sun N, Walch A, Xu P, Zhang J, Deng Q, Hu R, (2021) "Translatomic profiling reveals novel self-restricting virus-host interactions during HBV infection." <i>J Hepatol</i> <b>75</b>(1):74–85; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33621634 33621634]; doi: [https://dx.doi.org/10.1016/j.jhep.2021.02.009 10.1016/j.jhep.2021.02.009]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33621634 3]. | ||
+ | #Gassaway BM, Paulo JA, Gygi SP, (2021) "Categorization of Phosphorylation Site Behavior during the Diauxic Shift in <i>Saccharomyces cerevisiae</i>." <i>J Proteome Res</i> <b>20</b>(5):2487–2496; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33630598 33630598]; doi: [https://dx.doi.org/10.1021/acs.jproteome.0c00943 10.1021/acs.jproteome.0c00943]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33630598 42]. | ||
+ | # () "" <i></i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/ ]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33731925 153]. | ||
+ | #Schmid D, Warnken U, Latzer P, Hoffmann DC, Roth J, Kutschmann S, Jaschonek H, Rübmann P, Foltyn M, Vollmuth P, Winkler F, Seliger C, Felix M, Sahm F, Haas J, Reuss D, Bendszus M, Wildemann B, von Deimling A, Wick W, Kessler T, (2021) "Diagnostic biomarkers from proteomic characterization of cerebrospinal fluid in patients with brain malignancies." <i>J Neurochem</i> <b>158</b>(2):522–538; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33735443 33735443]; doi: [https://dx.doi.org/10.1111/jnc.15350 10.1111/jnc.15350]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33735443 299]. | ||
+ | #Wegler C, Matsson P, Krogstad V, Urdzik J, Christensen H, Andersson TB, Artursson P, (2021) "Influence of Proteome Profiles and Intracellular Drug Exposure on Differences in CYP Activity in Donor-Matched Human Liver Microsomes and Hepatocytes." <i>Mol Pharm</i> <b>18</b>(4):1792–1805; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33739838 33739838]; doi: [https://dx.doi.org/10.1021/acs.molpharmaceut.1c00053 10.1021/acs.molpharmaceut.1c00053]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33739838 93]. | ||
+ | #Zhang X, Liu Y, Zhang Z, Tan J, Zhang J, Ou H, Li J, Song Z, (2021) "Multi-Omics Analysis of Anlotinib in Pancreatic Cancer and Development of an Anlotinib-Related Prognostic Signature." <i>Front Cell Dev Biol</i> <b>9</b>:649265; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33748143 33748143]; doi: [https://dx.doi.org/10.3389/fcell.2021.649265 10.3389/fcell.2021.649265]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33748143 4]. | ||
+ | #Cifani P, Li Z, Luo D, Grivainis M, Intlekofer AM, Fenyö D, Kentsis A, (2021) "Discovery of Protein Modifications Using Differential Tandem Mass Spectrometry Proteomics." <i>J Proteome Res</i> <b>20</b>(4):1835–1848; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33749263 33749263]; doi: [https://dx.doi.org/10.1021/acs.jproteome.0c00638 10.1021/acs.jproteome.0c00638]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33749263 1]. | ||
+ | #Dourthe C, Julien C, Di Tommaso S, Dupuy JW, Dugot-Senant N, Brochard A, Le Bail B, Blanc JF, Chiche L, Balabaud C, Bioulac-Sage P, Saltel F, Raymond AA, (2021) "Proteomic Profiling of Hepatocellular Adenomas Paves the Way to Diagnostic and Prognostic Approaches." <i>Hepatology</i> <b>74</b>(3):1595–1610; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33754354 33754354]; doi: [https://dx.doi.org/10.1002/hep.31826 10.1002/hep.31826]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33754354 467]. | ||
+ | #Maier JI, Rogg M, Helmstädter M, Sammarco A, Schilling O, Sabass B, Miner JH, Dengjel J, Walz G, Werner M, Huber TB, Schell C, (2021) "EPB41L5 controls podocyte extracellular matrix assembly by adhesome-dependent force transmission." <i>Cell Rep</i> <b>34</b>(12):108883; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33761352 33761352]; doi: [https://dx.doi.org/10.1016/j.celrep.2021.108883 10.1016/j.celrep.2021.108883]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33761352 20]. | ||
+ | #Kim D, Lee YR, Choi TI, Kim SH, Kang HC, Kim CH, Lee S, (2021) "Comparative Proteome Research in a Zebrafish Model for Vanishing White Matter Disease." <i>Int J Mol Sci</i> <b>22</b>(5):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33800130 33800130]; doi: [https://dx.doi.org/10.3390/ijms22052707 10.3390/ijms22052707]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33800130 2]. | ||
+ | #Li X, Chen R, Kemper S, Brigstock DR, (2021) "Structural and Functional Characterization of Fibronectin in Extracellular Vesicles From Hepatocytes." <i>Front Cell Dev Biol</i> <b>9</b>:640667; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33816490 33816490]; doi: [https://dx.doi.org/10.3389/fcell.2021.640667 10.3389/fcell.2021.640667]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33816490 3]. | ||
+ | #Bakochi A, Mohanty T, Pyl PT, Gueto-Tettay CA, Malmström L, Linder A, Malmström J, (2021) "Cerebrospinal fluid proteome maps detect pathogen-specific host response patterns in meningitis." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33821792 33821792]; doi: [https://dx.doi.org/10.7554/eLife.64159 10.7554/eLife.64159]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33821792 109]. | ||
+ | #Rodrigues JG, Duarte HO, Gomes C, Balmaña M, Martins ÁM, Hensbergen PJ, de Ru AH, Lima J, Albergaria A, van Veelen PA, Wuhrer M, Gomes J, Reis CA, (2021) "Terminal α2,6-sialylation of epidermal growth factor receptor modulates antibody therapy response of colorectal cancer cells." <i>Cell Oncol (Dordr)</i> <b>44</b>(4):835–850; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33847896 33847896]; doi: [https://dx.doi.org/10.1007/s13402-021-00606-z 10.1007/s13402-021-00606-z]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33847896 12]. | ||
+ | #Marcu A, Bichmann L, Kuchenbecker L, Kowalewski DJ, Freudenmann LK, Backert L, Mühlenbruch L, Szolek A, Lübke M, Wagner P, Engler T, Matovina S, Wang J, Hauri-Hohl M, Martin R, Kapolou K, Walz JS, Velz J, Moch H, Regli L, Silginer M, Weller M, Löffler MW, Erhard F, Schlosser A, Kohlbacher O, Stevanović S, Rammensee HG, Neidert MC, (2021) "HLA Ligand Atlas: a benign reference of HLA-presented peptides to improve T-cell-based cancer immunotherapy." <i>J Immunother Cancer</i> <b>9</b>(4):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33858848 33858848]; doi: [https://dx.doi.org/10.1136/jitc-2020-002071 10.1136/jitc-2020-002071]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33858848 1490]. | ||
+ | #Nyström EEL, Martinez-Abad B, Arike L, Birchenough GMH, Nonnecke EB, Castillo PA, Svensson F, Bevins CL, Hansson GC, Johansson MEV, (2021) "An intercrypt subpopulation of goblet cells is essential for colonic mucus barrier function." <i>Science</i> <b>372</b>(6539):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33859001 33859001]; doi: [https://dx.doi.org/10.1126/science.abb1590 10.1126/science.abb1590]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33859001 16]. | ||
+ | #Díez P, Pérez-Andrés M, Bøgsted M, Azkargorta M, García-Valiente R, Dégano RM, Blanco E, Mateos-Gomez S, Bárcena P, Santa Cruz S, Góngora R, Elortza F, Landeira-Viñuela A, Juanes-Velasco P, Segura V, Manzano-Román R, Almeida J, Dybkaer K, Orfao A, Fuentes M, (2021) "Dynamic Intracellular Metabolic Cell Signaling Profiles During Ag-Dependent B-Cell Differentiation." <i>Front Immunol</i> <b>12</b>:637832; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33859640 33859640]; doi: [https://dx.doi.org/10.3389/fimmu.2021.637832 10.3389/fimmu.2021.637832]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33859640 105]. | ||
+ | #Wei P, Hao L, Ma F, Yu Q, Buchberger AR, Lee S, Bushman W, Li L, (2019) "Urinary Metabolomic and Proteomic Analyses in a Mouse Model of Prostatic Inflammation." <i>Urine (Amst)</i> <b>1</b>:17–23; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33870183 33870183]; doi: [https://dx.doi.org/10.1016/j.urine.2020.05.002 10.1016/j.urine.2020.05.002]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33870183 24]. | ||
+ | #Iwan A, Moskalewski S, Hyc A, (2021) "Growth factor profile in calcified cartilage from the metaphysis of a calf costochondral junction, the site of initial bone formation." <i>Biomed Rep</i> <b>14</b>(6):54; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33884197 33884197]; doi: [https://dx.doi.org/10.3892/br.2021.1430 10.3892/br.2021.1430]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33884197 4]. | ||
+ | #Del Favero G, Janker L, Neuditschko B, Hohenbichler J, Kiss E, Woelflingseder L, Gerner C, Marko D, (2021) "Exploring the dermotoxicity of the mycotoxin deoxynivalenol: combined morphologic and proteomic profiling of human epidermal cells reveals alteration of lipid biosynthesis machinery and membrane structural integrity relevant for skin barrier function." <i>Arch Toxicol</i> <b>95</b>(6):2201–2221; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33890134 33890134]; doi: [https://dx.doi.org/10.1007/s00204-021-03042-y 10.1007/s00204-021-03042-y]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33890134 58]. | ||
+ | #Lavalou J, Mao Q, Harmansa S, Kerridge S, Lellouch AC, Philippe JM, Audebert S, Camoin L, Lecuit T, (2021) "Formation of polarized contractile interfaces by self-organized Toll-8/Cirl GPCR asymmetry." <i>Dev Cell</i> <b>56</b>(11):1574–1588.e7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33932333 33932333]; doi: [https://dx.doi.org/10.1016/j.devcel.2021.03.030 10.1016/j.devcel.2021.03.030]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33932333 17]. | ||
+ | #Demmers LC, Wu W, Heck AJR, (2021) "HLA Class II Presentation Is Specifically Altered at Elevated Temperatures in the B-Lymphoblastic Cell Line JY." <i>Mol Cell Proteomics</i> <b>20</b>:100089; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33933681 33933681]; doi: [https://dx.doi.org/10.1016/j.mcpro.2021.100089 10.1016/j.mcpro.2021.100089]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33933681 36]. | ||
+ | #Maheshwari G, Wen G, Gessner DK, Ringseis R, Lochnit G, Eder K, Zorn H, Timm T, (2021) "Tandem mass tag-based proteomics for studying the effects of a biotechnologically produced oyster mushroom against hepatic steatosis in obese Zucker rats." <i>J Proteomics</i> <b>242</b>:104255; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33957313 33957313]; doi: [https://dx.doi.org/10.1016/j.jprot.2021.104255 10.1016/j.jprot.2021.104255]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33957313 1]. | ||
+ | #Englert H, Rangaswamy C, Deppermann C, Sperhake JP, Krisp C, Schreier D, Gordon E, Konrath S, Haddad M, Pula G, Mailer RK, Schlüter H, Kluge S, Langer F, Püschel K, Panousis K, Stavrou EX, Maas C, Renné T, Frye M, (2021) "Defective NET clearance contributes to sustained FXII activation in COVID-19-associated pulmonary thrombo-inflammation." <i>EBioMedicine</i> <b>67</b>:103382; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34000623 34000623]; doi: [https://dx.doi.org/10.1016/j.ebiom.2021.103382 10.1016/j.ebiom.2021.103382]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34000623 36]. | ||
+ | #Parker R, Partridge T, Wormald C, Kawahara R, Stalls V, Aggelakopoulou M, Parker J, Powell Doherty R, Ariosa Morejon Y, Lee E, Saunders K, Haynes BF, Acharya P, Thaysen-Andersen M, Borrow P, Ternette N, (2021) "Mapping the SARS-CoV-2 spike glycoprotein-derived peptidome presented by HLA class II on dendritic cells." <i>Cell Rep</i> <b>35</b>(8):109179; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34004174 34004174]; doi: [https://dx.doi.org/10.1016/j.celrep.2021.109179 10.1016/j.celrep.2021.109179]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34004174 30]. | ||
+ | #Chen X, Saccon E, Appelberg KS, Mikaeloff F, Rodriguez JE, Vinhas BS, Frisan T, Végvári Á, Mirazimi A, Neogi U, Gupta S, (2021) "Type-I interferon signatures in SARS-CoV-2 infected Huh7 cells." <i>Cell Death Discov</i> <b>7</b>(1):114; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34006825 34006825]; doi: [https://dx.doi.org/10.1038/s41420-021-00487-z 10.1038/s41420-021-00487-z]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34006825 2]. | ||
+ | #Gallais F, Pible O, Gaillard JC, Debroas S, Batina H, Ruat S, Sandron F, Delafoy D, Gerber Z, Olaso R, Gas F, Bellanger L, Deleuze JF, Grenga L, Armengaud J, (2021) "Heterogeneity of SARS-CoV-2 virus produced in cell culture revealed by shotgun proteomics and supported by genome sequencing." <i>Anal Bioanal Chem</i> <b>413</b>(29):7265–7275; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34013402 34013402]; doi: [https://dx.doi.org/10.1007/s00216-021-03401-9 10.1007/s00216-021-03401-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34013402 3]. | ||
+ | #Pisani F, Simone L, Mola MG, De Bellis M, Frigeri A, Nicchia GP, Svelto M, (2021) "Regulation of aquaporin-4 expression in the central nervous system investigated using M23-AQP4 null mouse." <i>Glia</i> <b>69</b>(9):2235–2251; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34038017 34038017]; doi: [https://dx.doi.org/10.1002/glia.24032 10.1002/glia.24032]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34038017 7]. | ||
+ | #Chen H, Bühler K, Zhu Y, Nie X, Liu W, (2021) "Proteomics analysis reveals the effect of 1α,25(OH)<sub>2</sub>VD<sub>3</sub>-glycosides on development of early testes in piglets." <i>Sci Rep</i> <b>11</b>(1):11341; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34059707 34059707]; doi: [https://dx.doi.org/10.1038/s41598-021-90676-8 10.1038/s41598-021-90676-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34059707 3]. | ||
+ | #Shaba E, Landi C, Carleo A, Vantaggiato L, Paccagnini E, Gentile M, Bianchi L, Lupetti P, Bargagli E, Prasse A, Bini L, (2021) "Proteome Characterization of BALF Extracellular Vesicles in Idiopathic Pulmonary Fibrosis: Unveiling Undercover Molecular Pathways." <i>Int J Mol Sci</i> <b>22</b>(11):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34071777 34071777]; doi: [https://dx.doi.org/10.3390/ijms22115696 10.3390/ijms22115696]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34071777 4]. | ||
+ | #Hatje FA, Wedekind U, Sachs W, Loreth D, Reichelt J, Demir F, Kosub C, Heintz L, Tomas NM, Huber TB, Skuza S, Sachs M, Zielinski S, Rinschen MM, Meyer-Schwesinger C, (2021) "Tripartite Separation of Glomerular Cell Types and Proteomes from Reporter-Free Mice." <i>J Am Soc Nephrol</i> <b>32</b>(9):2175–2193; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34074698 34074698]; doi: [https://dx.doi.org/10.1681/ASN.2020091346 10.1681/ASN.2020091346]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34074698 15]. | ||
+ | #Wu CT, Lidsky PV, Xiao Y, Lee IT, Cheng R, Nakayama T, Jiang S, Demeter J, Bevacqua RJ, Chang CA, Whitener RL, Stalder AK, Zhu B, Chen H, Goltsev Y, Tzankov A, Nayak JV, Nolan GP, Matter MS, Andino R, Jackson PK, (2021) "SARS-CoV-2 infects human pancreatic β cells and elicits β cell impairment." <i>Cell Metab</i> <b>33</b>(8):1565–1576.e5; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34081912 34081912]; doi: [https://dx.doi.org/10.1016/j.cmet.2021.05.013 10.1016/j.cmet.2021.05.013]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34081912 40]. | ||
+ | #Hu S, Li P, Zhang R, Liu X, Wei S, (2021) "Integrated metabolomics and proteomics analysis reveals energy metabolism disorders in the livers of sleep-deprived mice." <i>J Proteomics</i> <b>245</b>:104290; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34089895 34089895]; doi: [https://dx.doi.org/10.1016/j.jprot.2021.104290 10.1016/j.jprot.2021.104290]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34089895 1]. | ||
+ | #Lei T, Wang J, Liu Y, Chen P, Zhang Z, Zhang X, Guo W, Wang X, Li Q, Du H, (2021) "Proteomic profile of human stem cells from dental pulp and periodontal ligament." <i>J Proteomics</i> <b>245</b>:104280; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34089896 34089896]; doi: [https://dx.doi.org/10.1016/j.jprot.2021.104280 10.1016/j.jprot.2021.104280]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34089896 9]. | ||
+ | #Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R, (2021) "Quantitative proteomics identifies the core proteome of exosomes with syntenin-1 as the highest abundant protein and a putative universal biomarker." <i>Nat Cell Biol</i> <b>23</b>(6):631–641; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34108659 34108659]; doi: [https://dx.doi.org/10.1038/s41556-021-00693-y 10.1038/s41556-021-00693-y]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34108659 10]. | ||
+ | #Burns AP, Zhang YQ, Xu T, Wei Z, Yao Q, Fang Y, Cebotaru V, Xia M, Hall MD, Huang R, Simeonov A, LeClair CA, Tao D, (2021) "A Universal and High-Throughput Proteomics Sample Preparation Platform." <i>Anal Chem</i> <b>93</b>(24):8423–8431; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34110797 34110797]; doi: [https://dx.doi.org/10.1021/acs.analchem.1c00265 10.1021/acs.analchem.1c00265]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34110797 36]. | ||
+ | #Friedrich C, Schallenberg S, Kirchner M, Ziehm M, Niquet S, Haji M, Beier C, Neudecker J, Klauschen F, Mertins P, (2021) "Comprehensive micro-scaled proteome and phosphoproteome characterization of archived retrospective cancer repositories." <i>Nat Commun</i> <b>12</b>(1):3576; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34117251 34117251]; doi: [https://dx.doi.org/10.1038/s41467-021-23855-w 10.1038/s41467-021-23855-w]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34117251 154]. | ||
+ | #Mercer TJ, Ohashi Y, Boeing S, Jefferies HBJ, De Tito S, Flynn H, Tremel S, Zhang W, Wirth M, Frith D, Snijders AP, Williams RL, Tooze SA, (2021) "Phosphoproteomic identification of ULK substrates reveals VPS15-dependent ULK/VPS34 interplay in the regulation of autophagy." <i>EMBO J</i> <b>40</b>(14):e105985; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34121209 34121209]; doi: [https://dx.doi.org/10.15252/embj.2020105985 10.15252/embj.2020105985]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34121209 234]. | ||
+ | #de la Calle Arregui C, Plata-Gómez AB, Deleyto-Seldas N, García F, Ortega-Molina A, Abril-Garrido J, Rodriguez E, Nemazanyy I, Tribouillard L, de Martino A, Caleiras E, Campos-Olivas R, Mulero F, Laplante M, Muñoz J, Pende M, Sabio G, Sabatini DM, Efeyan A, (2021) "Limited survival and impaired hepatic fasting metabolism in mice with constitutive Rag GTPase signaling." <i>Nat Commun</i> <b>12</b>(1):3660; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34135321 34135321]; doi: [https://dx.doi.org/10.1038/s41467-021-23857-8 10.1038/s41467-021-23857-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34135321 3]. | ||
+ | #Zeng X, Ma B, (2021) "MSTracer: A Machine Learning Software Tool for Peptide Feature Detection from Liquid Chromatography-Mass Spectrometry Data." <i>J Proteome Res</i> <b>20</b>(7):3455–3462; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34137255 34137255]; doi: [https://dx.doi.org/10.1021/acs.jproteome.0c01029 10.1021/acs.jproteome.0c01029]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34137255 3]. | ||
+ | #Griffante G, Gugliesi F, Pasquero S, Dell'Oste V, Biolatti M, Salinger AJ, Mondal S, Thompson PR, Weerapana E, Lebbink RJ, Soppe JA, Stamminger T, Girault V, Pichlmair A, Oroszlán G, Coen DM, De Andrea M, Landolfo S, (2021) "Human cytomegalovirus-induced host protein citrullination is crucial for viral replication." <i>Nat Commun</i> <b>12</b>(1):3910; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34162877 34162877]; doi: [https://dx.doi.org/10.1038/s41467-021-24178-6 10.1038/s41467-021-24178-6]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34162877 15]. | ||
+ | #Nagler A, Kalaora S, Barbolin C, Gangaev A, Ketelaars SLC, Alon M, Pai J, Benedek G, Yahalom-Ronen Y, Erez N, Greenberg P, Yagel G, Peri A, Levin Y, Satpathy AT, Bar-Haim E, Paran N, Kvistborg P, Samuels Y, (2021) "Identification of presented SARS-CoV-2 HLA class I and HLA class II peptides using HLA peptidomics." <i>Cell Rep</i> <b>35</b>(13):109305; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34166618 34166618]; doi: [https://dx.doi.org/10.1016/j.celrep.2021.109305 10.1016/j.celrep.2021.109305]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34166618 144]. | ||
+ | #Brauer M, Lassek C, Hinze C, Hoyer J, Becher D, Jahn D, Sievers S, Riedel K, (2021) "What's a Biofilm?-How the Choice of the Biofilm Model Impacts the Protein Inventory of <i>Clostridioides difficile</i>." <i>Front Microbiol</i> <b>12</b>:682111; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34177868 34177868]; doi: [https://dx.doi.org/10.3389/fmicb.2021.682111 10.3389/fmicb.2021.682111]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34177868 240]. | ||
+ | #Hirama T, Tokita S, Nakatsugawa M, Murata K, Nannya Y, Matsuo K, Inoko H, Hirohashi Y, Hashimoto S, Ogawa S, Takemasa I, Sato N, Hata F, Kanaseki T, Torigoe T, (2021) "Proteogenomic identification of an immunogenic HLA class I neoantigen in mismatch repair-deficient colorectal cancer tissue." <i>JCI Insight</i> <b>6</b>(14):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34185709 34185709]; doi: [https://dx.doi.org/10.1172/jci.insight.146356 10.1172/jci.insight.146356]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34185709 11]. | ||
+ | #Schaffert A, Krieg L, Weiner J, Schlichting R, Ueberham E, Karkossa I, Bauer M, Landgraf K, Junge KM, Wabitsch M, Lehmann J, Escher BI, Zenclussen AC, Körner A, Blüher M, Heiker JT, von Bergen M, Schubert K, (2021) "Alternatives for the worse: Molecular insights into adverse effects of bisphenol a and substitutes during human adipocyte differentiation." <i>Environ Int</i> <b>156</b>:106730; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34186270 34186270]; doi: [https://dx.doi.org/10.1016/j.envint.2021.106730 10.1016/j.envint.2021.106730]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34186270 169]. | ||
+ | #Schlagowski AM, Knöringer K, Morlot S, Sánchez Vicente A, Flohr T, Krämer L, Boos F, Khalid N, Ahmed S, Schramm J, Murschall LM, Haberkant P, Stein F, Riemer J, Westermann B, Braun RJ, Winklhofer KF, Charvin G, Herrmann JM, (2021) "Increased levels of mitochondrial import factor Mia40 prevent the aggregation of polyQ proteins in the cytosol." <i>EMBO J</i> <b>40</b>(16):e107913; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34191328 34191328]; doi: [https://dx.doi.org/10.15252/embj.2021107913 10.15252/embj.2021107913]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34191328 3]. | ||
+ | #Vaz C, Pitarch A, Gómez-Molero E, Amador-García A, Weig M, Bader O, Monteoliva L, Gil C, (2021) "Mass Spectrometry-Based Proteomic and Immunoproteomic Analyses of the <i>Candida albicans</i> Hyphal Secretome Reveal Diagnostic Biomarker Candidates for Invasive Candidiasis." <i>J Fungi (Basel)</i> <b>7</b>(7):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34201883 34201883]; doi: [https://dx.doi.org/10.3390/jof7070501 10.3390/jof7070501]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34201883 2]. | ||
+ | #Rusanov AL, Kozhin PM, Tikhonova OV, Zgoda VG, Loginov DS, Chlastáková A, Selinger M, Sterba J, Grubhoffer L, Luzgina NG, (2021) "Proteome Profiling of PMJ2-R and Primary Peritoneal Macrophages." <i>Int J Mol Sci</i> <b>22</b>(12):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34204832 34204832]; doi: [https://dx.doi.org/10.3390/ijms22126323 10.3390/ijms22126323]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34204832 18]. | ||
+ | #Bauzá-Martinez J, Heck AJR, Wu W, (2021) "HLA-B and cysteinylated ligands distinguish the antigen presentation landscape of extracellular vesicles." <i>Commun Biol</i> <b>4</b>(1):825; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34211107 34211107]; doi: [https://dx.doi.org/10.1038/s42003-021-02364-y 10.1038/s42003-021-02364-y]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34211107 12]. | ||
+ | #Yang H, Yao S, Zhang M, Wu C, (2021) "Heat Adaptation Induced Cross Protection Against Ethanol Stress in <i>Tetragenococcus halophilu</i>s: Physiological Characteristics and Proteomic Analysis." <i>Front Microbiol</i> <b>12</b>:686672; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34220775 34220775]; doi: [https://dx.doi.org/10.3389/fmicb.2021.686672 10.3389/fmicb.2021.686672]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34220775 14]. | ||
+ | #Stingl C, Bureo Gonzalez A, Güzel C, Phoa KYN, Doukas M, Breimer GE, Meijer SL, Bergman JJ, Luider TM, (2021) "Alteration of protein expression and spliceosome pathway activity during Barrett's carcinogenesis." <i>J Gastroenterol</i> <b>56</b>(9):791–807; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34227026 34227026]; doi: [https://dx.doi.org/10.1007/s00535-021-01802-2 10.1007/s00535-021-01802-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34227026 91]. | ||
+ | #Wu Q, Poulsen SB, Murali SK, Grimm PR, Su XT, Delpire E, Welling PA, Ellison DH, Fenton RA, (2021) "Large-Scale Proteomic Assessment of Urinary Extracellular Vesicles Highlights Their Reliability in Reflecting Protein Changes in the Kidney." <i>J Am Soc Nephrol</i> <b>32</b>(9):2195–2209; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34230103 34230103]; doi: [https://dx.doi.org/10.1681/ASN.2020071035 10.1681/ASN.2020071035]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34230103 34]. | ||
+ | #Chen DY, Khan N, Close BJ, Goel RK, Blum B, Tavares AH, Kenney D, Conway HL, Ewoldt JK, Chitalia VC, Crossland NA, Chen CS, Kotton DN, Baker SC, Fuchs SY, Connor JH, Douam F, Emili A, Saeed M, (2021) "SARS-CoV-2 Disrupts Proximal Elements in the JAK-STAT Pathway." <i>J Virol</i> <b>95</b>(19):e0086221; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34260266 34260266]; doi: [https://dx.doi.org/10.1128/JVI.00862-21 10.1128/JVI.00862-21]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34260266 6]. | ||
+ | #Adam RJ, Paterson MR, Wardecke L, Hoffmann BR, Kriegel AJ, (2020) "Functionally Essential Tubular Proteins Are Lost to Urine-Excreted, Large Extracellular Vesicles during Chronic Renal Insufficiency." <i>Kidney360</i> <b>1</b>(10):1105–1115; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34263177 34263177]; doi: [https://dx.doi.org/10.34067/kid.0001212020 10.34067/kid.0001212020]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34263177 9]. | ||
+ | #Israel S, Drexler HCA, Fuellen G, Boiani M, (2021) "The COP9 signalosome subunit 3 is necessary for early embryo survival by way of a stable protein deposit in mouse oocytes." <i>Mol Hum Reprod</i> <b>27</b>(8):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34264319 34264319]; doi: [https://dx.doi.org/10.1093/molehr/gaab048 10.1093/molehr/gaab048]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34264319 130]. | ||
+ | #Kesavan R, Frömel T, Zukunft S, Brüne B, Weigert A, Wittig I, Popp R, Fleming I, (2021) "The Consequences of Soluble Epoxide Hydrolase Deletion on Tumorigenesis and Metastasis in a Mouse Model of Breast Cancer." <i>Int J Mol Sci</i> <b>22</b>(13):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34281173 34281173]; doi: [https://dx.doi.org/10.3390/ijms22137120 10.3390/ijms22137120]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34281173 13]. | ||
+ | #de Azambuja Rodrigues PM, Valente RH, Brunoro GVF, Nakaya HTI, Araújo-Pereira M, Bozza PT, Bozza FA, Trugilho MRO, (2021) "Proteomics reveals disturbances in the immune response and energy metabolism of monocytes from patients with septic shock." <i>Sci Rep</i> <b>11</b>(1):15149; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34312428 34312428]; doi: [https://dx.doi.org/10.1038/s41598-021-94474-0 10.1038/s41598-021-94474-0]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34312428 72]. | ||
+ | #Striednig B, Lanner U, Niggli S, Katic A, Vormittag S, Brülisauer S, Hochstrasser R, Kaech A, Welin A, Flieger A, Ziegler U, Schmidt A, Hilbi H, Personnic N, (2021) "Quorum sensing governs a transmissive Legionella subpopulation at the pathogen vacuole periphery." <i>EMBO Rep</i> <b>22</b>(9):e52972; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34314090 34314090]; doi: [https://dx.doi.org/10.15252/embr.202152972 10.15252/embr.202152972]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34314090 8]. | ||
+ | #Tabang DN, Cui Y, Tremmel DM, Ford M, Li Z, Sackett SD, Odorico JS, Li L, (2021) "Analysis of pancreatic extracellular matrix protein post-translational modifications <i>via</i> electrostatic repulsion-hydrophilic interaction chromatography coupled with mass spectrometry." <i>Mol Omics</i> <b>17</b>(5):652–664; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34318855 34318855]; doi: [https://dx.doi.org/10.1039/d1mo00104c 10.1039/d1mo00104c]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34318855 64]. | ||
+ | #Koyuncu S, Loureiro R, Lee HJ, Wagle P, Krueger M, Vilchez D, (2021) "Rewiring of the ubiquitinated proteome determines ageing in C. elegans." <i>Nature</i> <b>596</b>(7871):285–290; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34321666 34321666]; doi: [https://dx.doi.org/10.1038/s41586-021-03781-z 10.1038/s41586-021-03781-z]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34321666 72]. | ||
+ | #Psakhye I, Branzei D, (2021) "SMC complexes are guarded by the SUMO protease Ulp2 against SUMO-chain-mediated turnover." <i>Cell Rep</i> <b>36</b>(5):109485; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34348159 34348159]; doi: [https://dx.doi.org/10.1016/j.celrep.2021.109485 10.1016/j.celrep.2021.109485]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34348159 2]. | ||
+ | #Vanderboom PM, Dasari S, Ruegsegger GN, Pataky MW, Lucien F, Heppelmann CJ, Lanza IR, Nair KS, (2021) "A size-exclusion-based approach for purifying extracellular vesicles from human plasma." <i>Cell Rep Methods</i> <b>1</b>(3):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34355211 34355211]; doi: [https://dx.doi.org/10.1016/j.crmeth.2021.100055 10.1016/j.crmeth.2021.100055]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34355211 140]. | ||
+ | #Jang HN, Moon SJ, Jung KC, Kim SW, Kim H, Han D, Kim JH, (2021) "Mass Spectrometry-Based Proteomic Discovery of Prognostic Biomarkers in Adrenal Cortical Carcinoma." <i>Cancers (Basel)</i> <b>13</b>(15):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34359790 34359790]; doi: [https://dx.doi.org/10.3390/cancers13153890 10.3390/cancers13153890]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34359790 174]. | ||
+ | #Wang HZ, Luo WL, Zeng NX, Li HZ, Li L, Yan C, Wu LL, (2021) "Cerebrospinal fluid proteomics reveal potential protein targets of JiaWeiSiNiSan in preventing chronic psychological stress damage." <i>Pharm Biol</i> <b>59</b>(1):1065–1076; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34383630 34383630]; doi: [https://dx.doi.org/10.1080/13880209.2021.1954666 10.1080/13880209.2021.1954666]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34383630 3]. | ||
+ | #Qi YA, Maity TK, Cultraro CM, Misra V, Zhang X, Ade C, Gao S, Milewski D, Nguyen KD, Ebrahimabadi MH, Hanada KI, Khan J, Sahinalp C, Yang JC, Guha U, (2021) "Proteogenomic Analysis Unveils the HLA Class I-Presented Immunopeptidome in Melanoma and EGFR-Mutant Lung Adenocarcinoma." <i>Mol Cell Proteomics</i> <b>20</b>:100136; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34391887 34391887]; doi: [https://dx.doi.org/10.1016/j.mcpro.2021.100136 10.1016/j.mcpro.2021.100136]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34391887 27]. | ||
+ | #Klaeger S, Apffel A, Clauser KR, Sarkizova S, Oliveira G, Rachimi S, Le PM, Tarren A, Chea V, Abelin JG, Braun DA, Ott PA, Keshishian H, Hacohen N, Keskin DB, Wu CJ, Carr SA, (2021) "Optimized Liquid and Gas Phase Fractionation Increases HLA-Peptidome Coverage for Primary Cell and Tissue Samples." <i>Mol Cell Proteomics</i> <b>20</b>:100133; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34391888 34391888]; doi: [https://dx.doi.org/10.1016/j.mcpro.2021.100133 10.1016/j.mcpro.2021.100133]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34391888 230]. | ||
+ | #ElAbd H, Degenhardt F, Koudelka T, Kamps AK, Tholey A, Bacher P, Lenz TL, Franke A, Wendorff M, (2021) "Immunopeptidomics toolkit library (IPTK): a python-based modular toolbox for analyzing immunopeptidomics data." <i>BMC Bioinformatics</i> <b>22</b>(1):405; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34404349 34404349]; doi: [https://dx.doi.org/10.1186/s12859-021-04315-0 10.1186/s12859-021-04315-0]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34404349 4]. | ||
+ | #Aviner R, Li KH, Frydman J, Andino R, (2021) "Cotranslational prolyl hydroxylation is essential for flavivirus biogenesis." <i>Nature</i> <b>596</b>(7873):558–564; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34408324 34408324]; doi: [https://dx.doi.org/10.1038/s41586-021-03851-2 10.1038/s41586-021-03851-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34408324 63]. | ||
+ | #Kikuchi Y, Tokita S, Hirama T, Kochin V, Nakatsugawa M, Shinkawa T, Hirohashi Y, Tsukahara T, Hata F, Takemasa I, Sato N, Kanaseki T, Torigoe T, (2021) "CD8<sup>+</sup> T-cell Immune Surveillance against a Tumor Antigen Encoded by the Oncogenic Long Noncoding RNA <i>PVT1</i>." <i>Cancer Immunol Res</i> <b>9</b>(11):1342–1353; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34433589 34433589]; doi: [https://dx.doi.org/10.1158/2326-6066.CIR-20-0964 10.1158/2326-6066.CIR-20-0964]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34433589 11]. | ||
+ | #Gonzalez-Franquesa A, Peijs L, Cervone DT, Koçana C, R Zierath J, Deshmukh AS, (2021) "Insulin and 5-Aminoimidazole-4-Carboxamide Ribonucleotide (AICAR) Differentially Regulate the Skeletal Muscle Cell Secretome." <i>Proteomes</i> <b>9</b>(3):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34449730 34449730]; doi: [https://dx.doi.org/10.3390/proteomes9030037 10.3390/proteomes9030037]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34449730 34]. | ||
+ | #Sripathi SR, Hu MW, Turaga RC, Mertz J, Liu MM, Wan J, Maruotti J, Wahlin KJ, Berlinicke CA, Qian J, Zack DJ, (2021) "Proteome Landscape of Epithelial-to-Mesenchymal Transition (EMT) of Retinal Pigment Epithelium Shares Commonalities With Malignancy-Associated EMT." <i>Mol Cell Proteomics</i> <b>20</b>:100131; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34455105 34455105]; doi: [https://dx.doi.org/10.1016/j.mcpro.2021.100131 10.1016/j.mcpro.2021.100131]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34455105 2]. | ||
+ | #Carruthers NJ, Strieder-Barboza C, Caruso JA, Flesher CG, Baker NA, Kerk SA, Ky A, Ehlers AP, Varban OA, Lyssiotis CA, Lumeng CN, Stemmer PM, O'Rourke RW, (2021) "The human type 2 diabetes-specific visceral adipose tissue proteome and transcriptome in obesity." <i>Sci Rep</i> <b>11</b>(1):17394; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34462518 34462518]; doi: [https://dx.doi.org/10.1038/s41598-021-96995-0 10.1038/s41598-021-96995-0]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34462518 20]. | ||
+ | #Wang H, Zhang Y, Guan X, Li X, Zhao Z, Gao Y, Zhang X, Chen R, (2021) "An Integrated Transcriptomics and Proteomics Analysis Implicates lncRNA MALAT1 in the Regulation of Lipid Metabolism." <i>Mol Cell Proteomics</i> <b>20</b>:100141; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34478876 34478876]; doi: [https://dx.doi.org/10.1016/j.mcpro.2021.100141 10.1016/j.mcpro.2021.100141]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34478876 6]. | ||
+ | # () "" <i></i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/ ]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34480900 36]. | ||
+ | #Mukherjee S, Perez KA, Dubois C, Nisbet RM, Li QX, Varghese S, Jin L, Birchall I, Streltsov VA, Vella LJ, McLean C, Barham KJ, Roberts BR, Masters CL, (2021) "Citrullination of Amyloid-β Peptides in Alzheimer's Disease." <i>ACS Chem Neurosci</i> <b>12</b>(19):3719–3732; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34519476 34519476]; doi: [https://dx.doi.org/10.1021/acschemneuro.1c00474 10.1021/acschemneuro.1c00474]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34519476 10]. | ||
+ | #Zhang X, Yang F, Li K, Cao W, Ru Y, Chen S, Li S, Liu X, Zhu Z, Zheng H, (2021) "The Insufficient Activation of RIG-I-Like Signaling Pathway Contributes to Highly Efficient Replication of Porcine Picornaviruses in IBRS-2 Cells." <i>Mol Cell Proteomics</i> <b>20</b>:100147; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34530158 34530158]; doi: [https://dx.doi.org/10.1016/j.mcpro.2021.100147 10.1016/j.mcpro.2021.100147]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34530158 4]. | ||
+ | #Tognoli ML, Vlahov N, Steenbeek S, Grawenda AM, Eyres M, Cano-Rodriguez D, Scrace S, Kartsonaki C, von Kriegsheim A, Willms E, Wood MJ, Rots MG, van Rheenen J, O'Neill E, Pankova D, (2021) "RASSF1C oncogene elicits amoeboid invasion, cancer stemness, and extracellular vesicle release via a SRC/Rho axis." <i>EMBO J</i> <b>40</b>(20):e107680; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34532864 34532864]; doi: [https://dx.doi.org/10.15252/embj.2021107680 10.15252/embj.2021107680]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34532864 4]. | ||
+ | #Champagne J, Pataskar A, Blommaert N, Nagel R, Wernaart D, Ramalho S, Kenski J, Bleijerveld OB, Zaal EA, Berkers CR, Altelaar M, Peeper DS, Faller WJ, Agami R, (2021) "Oncogene-dependent sloppiness in mRNA translation." <i>Mol Cell</i> <b>81</b>(22):4709–4721.e9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34562372 34562372]; doi: [https://dx.doi.org/10.1016/j.molcel.2021.09.002 10.1016/j.molcel.2021.09.002]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34562372 30]. | ||
+ | #Gao Z, Williams P, Li L, Wang Y, (2021) "A Quantitative Proteomic Approach for the Identification of DNA Guanine Quadruplex-Binding Proteins." <i>J Proteome Res</i> <b>20</b>(11):4919–4924; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34570971 34570971]; doi: [https://dx.doi.org/10.1021/acs.jproteome.1c00603 10.1021/acs.jproteome.1c00603]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34570971 30]. | ||
+ | #Gomkale R, Linden A, Neumann P, Schendzielorz AB, Stoldt S, Dybkov O, Kilisch M, Schulz C, Cruz-Zaragoza LD, Schwappach B, Ficner R, Jakobs S, Urlaub H, Rehling P, (2021) "Mapping protein interactions in the active TOM-TIM23 supercomplex." <i>Nat Commun</i> <b>12</b>(1):5715; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34588454 34588454]; doi: [https://dx.doi.org/10.1038/s41467-021-26016-1 10.1038/s41467-021-26016-1]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34588454 87]. | ||
+ | #Kim M, Park J, Bouhaddou M, Kim K, Rojc A, Modak M, Soucheray M, McGregor MJ, O'Leary P, Wolf D, Stevenson E, Foo TK, Mitchell D, Herrington KA, Muñoz DP, Tutuncuoglu B, Chen KH, Zheng F, Kreisberg JF, Diolaiti ME, Gordan JD, Coppé JP, Swaney DL, Xia B, van 't Veer L, Ashworth A, Ideker T, Krogan NJ, (2021) "A protein interaction landscape of breast cancer." <i>Science</i> <b>374</b>(6563):eabf3066; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34591612 34591612]; doi: [https://dx.doi.org/10.1126/science.abf3066 10.1126/science.abf3066]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34591612 702]. | ||
+ | #Swaney DL, Ramms DJ, Wang Z, Park J, Goto Y, Soucheray M, Bhola N, Kim K, Zheng F, Zeng Y, McGregor M, Herrington KA, O'Keefe R, Jin N, VanLandingham NK, Foussard H, Von Dollen J, Bouhaddou M, Jimenez-Morales D, Obernier K, Kreisberg JF, Kim M, Johnson DE, Jura N, Grandis JR, Gutkind JS, Ideker T, Krogan NJ, (2021) "A protein network map of head and neck cancer reveals PIK3CA mutant drug sensitivity." <i>Science</i> <b>374</b>(6563):eabf2911; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34591642 34591642]; doi: [https://dx.doi.org/10.1126/science.abf2911 10.1126/science.abf2911]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34591642 551]. | ||
+ | #Stieglitz F, Gerhard R, Pich A, (2021) "The Binary Toxin of <i>Clostridioides difficile</i> Alters the Proteome and Phosphoproteome of HEp-2 Cells." <i>Front Microbiol</i> <b>12</b>:725612; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34594315 34594315]; doi: [https://dx.doi.org/10.3389/fmicb.2021.725612 10.3389/fmicb.2021.725612]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34594315 57]. | ||
+ | #Ross SH, Rollings CM, Cantrell DA, (2021) "Quantitative Analyses Reveal How Hypoxia Reconfigures the Proteome of Primary Cytotoxic T Lymphocytes." <i>Front Immunol</i> <b>12</b>:712402; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34603285 34603285]; doi: [https://dx.doi.org/10.3389/fimmu.2021.712402 10.3389/fimmu.2021.712402]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34603285 6]. | ||
+ | #Yau B, Naghiloo S, Diaz-Vegas A, Carr AV, Van Gerwen J, Needham EJ, Jevon D, Chen SY, Hoehn KL, Brandon AE, Macia L, Cooney GJ, Shortreed MR, Smith LM, Keller MP, Thorn P, Larance M, James DE, Humphrey SJ, Kebede MA, (2021) "Proteomic pathways to metabolic disease and type 2 diabetes in the pancreatic islet." <i>iScience</i> <b>24</b>(10):103099; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34622154 34622154]; doi: [https://dx.doi.org/10.1016/j.isci.2021.103099 10.1016/j.isci.2021.103099]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34622154 38]. | ||
+ | #Di Persio S, Tekath T, Siebert-Kuss LM, Cremers JF, Wistuba J, Li X, Meyer Zu Hörste G, Drexler HCA, Wyrwoll MJ, Tüttelmann F, Dugas M, Kliesch S, Schlatt S, Laurentino S, Neuhaus N, (2021) "Single-cell RNA-seq unravels alterations of the human spermatogonial stem cell compartment in patients with impaired spermatogenesis." <i>Cell Rep Med</i> <b>2</b>(9):100395; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34622232 34622232]; doi: [https://dx.doi.org/10.1016/j.xcrm.2021.100395 10.1016/j.xcrm.2021.100395]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34622232 2]. | ||
+ | #Lorente E, Marcilla M, de la Sota PG, Quijada-Freire A, Mir C, López D, (2021) "Acid Stripping after Infection Improves the Detection of Viral HLA Class I Natural Ligands Identified by Mass Spectrometry." <i>Int J Mol Sci</i> <b>22</b>(19):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34638844 34638844]; doi: [https://dx.doi.org/10.3390/ijms221910503 10.3390/ijms221910503]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34638844 12]. | ||
+ | #Zhang YH, Hoopmann MR, Castaldi PJ, Simonsen KA, Midha MK, Cho MH, Criner GJ, Bueno R, Liu J, Moritz RL, Silverman EK, (2021) "Lung proteomic biomarkers associated with chronic obstructive pulmonary disease." <i>Am J Physiol Lung Cell Mol Physiol</i> <b>321</b>(6):L1119–L1130; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34668408 34668408]; doi: [https://dx.doi.org/10.1152/ajplung.00198.2021 10.1152/ajplung.00198.2021]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34668408 456]. | ||
+ | #Lu C, Glisovic-Aplenc T, Bernt KM, Nestler K, Cesare J, Cao L, Lee H, Fazelinia H, Chinwalla A, Xu Y, Shestova O, Xing Y, Gill S, Li M, Garcia B, Aplenc R, (2021) "Longitudinal Large-Scale Semiquantitative Proteomic Data Stability Across Multiple Instrument Platforms." <i>J Proteome Res</i> <b>20</b>(11):5203–5211; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34669412 34669412]; doi: [https://dx.doi.org/10.1021/acs.jproteome.1c00624 10.1021/acs.jproteome.1c00624]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34669412 192]. | ||
+ | #Saburina IN, Kosheleva NV, Kopylov AT, Lipina TV, Krasina ME, Zurina IM, Gorkun AA, Girina SS, Pulin AA, Kaysheva AL, Morozov SG, (2021) "Proteomic and electron microscopy study of myogenic differentiation of alveolar mucosa multipotent mesenchymal stromal cells in three-dimensional culture." <i>Proteomics</i> <b></b>:e2000304; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34674377 34674377]; doi: [https://dx.doi.org/10.1002/pmic.202000304 10.1002/pmic.202000304]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34674377 20]. | ||
+ | #Wang Y, Yen FS, Zhu XG, Timson RC, Weber R, Xing C, Liu Y, Allwein B, Luo H, Yeh HW, Heissel S, Unlu G, Gamazon ER, Kharas MG, Hite R, Birsoy K, (2021) "SLC25A39 is necessary for mitochondrial glutathione import in mammalian cells." <i>Nature</i> <b>599</b>(7883):136–140; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34707288 34707288]; doi: [https://dx.doi.org/10.1038/s41586-021-04025-w 10.1038/s41586-021-04025-w]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34707288 2]. | ||
+ | #Biswas D, Shenoy SV, Chetanya C, Lachén-Montes M, Barpanda A, Athithyan AP, Ghosh S, Ausín K, Zelaya MV, Fernández-Irigoyen J, Manna A, Roy S, Talukdar A, Ball GR, Santamaría E, Srivastava S, (2021) "Deciphering the Interregional and Interhemisphere Proteome of the Human Brain in the Context of the Human Proteome Project." <i>J Proteome Res</i> <b>20</b>(12):5280–5293; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34714085 34714085]; doi: [https://dx.doi.org/10.1021/acs.jproteome.1c00511 10.1021/acs.jproteome.1c00511]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34714085 80]. | ||
+ | #Sirois I, Isabelle M, Duquette JD, Saab F, Caron E, (2021) "Immunopeptidomics: Isolation of Mouse and Human MHC Class I- and II-Associated Peptides for Mass Spectrometry Analysis." <i>J Vis Exp</i> <b></b>(176):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34723952 34723952]; doi: [https://dx.doi.org/10.3791/63052 10.3791/63052]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34723952 38]. | ||
+ | #Leung MR, Zenezini Chiozzi R, Roelofs MC, Hevler JF, Ravi RT, Maitan P, Zhang M, Henning H, Bromfield EG, Howes SC, Gadella BM, Heck AJR, Zeev-Ben-Mordehai T, (2021) "In-cell structures of conserved supramolecular protein arrays at the mitochondria-cytoskeleton interface in mammalian sperm." <i>Proc Natl Acad Sci U S A</i> <b>118</b>(45):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34737233 34737233]; doi: [https://dx.doi.org/10.1073/pnas.2110996118 10.1073/pnas.2110996118]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34737233 6]. | ||
+ | #Yap K, Chung TH, Makeyev EV, (2021) "Hybridization-proximity labeling reveals spatially ordered interactions of nuclear RNA compartments." <i>Mol Cell</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34741808 34741808]; doi: [https://dx.doi.org/10.1016/j.molcel.2021.10.009 10.1016/j.molcel.2021.10.009]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34741808 18]. | ||
+ | #Shlomovitz I, Erlich Z, Arad G, Edry-Botzer L, Zargarian S, Cohen H, Manko T, Ofir-Birin Y, Cooks T, Regev-Rudzki N, Gerlic M, (2021) "Proteomic analysis of necroptotic extracellular vesicles." <i>Cell Death Dis</i> <b>12</b>(11):1059; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34750357 34750357]; doi: [https://dx.doi.org/10.1038/s41419-021-04317-z 10.1038/s41419-021-04317-z]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34750357 12]. | ||
+ | #Froehlich JW, Wang HS, Logvinenko T, Kostel S, DiMartino S, van Bokhoven A, Moses MA, Lee RS, MAPP Research Network., (2021) "The Urinary Proteomic Profile Implicates Key Regulators for Urologic Chronic Pelvic Pain Syndrome (UCPPS): A MAPP Research Network Study." <i>Mol Cell Proteomics</i> <b>21</b>(1):100176; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34774759 34774759]; doi: [https://dx.doi.org/10.1016/j.mcpro.2021.100176 10.1016/j.mcpro.2021.100176]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34774759 52]. | ||
+ | # () "" <i></i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/ ]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34793694 10]. | ||
+ | #Stirm M, Fonteyne LM, Shashikadze B, Lindner M, Chirivi M, Lange A, Kaufhold C, Mayer C, Medugorac I, Kessler B, Kurome M, Zakhartchenko V, Hinrichs A, Kemter E, Krause S, Wanke R, Arnold GJ, Wess G, Nagashima H, Hrabĕ de Angelis M, Flenkenthaler F, Kobelke LA, Bearzi C, Rizzi R, Bähr A, Reese S, Matiasek K, Walter MC, Kupatt C, Ziegler S, Bartenstein P, Fröhlich T, Klymiuk N, Blutke A, Wolf E, (2021) "A scalable, clinically severe pig model for Duchenne muscular dystrophy." <i>Dis Model Mech</i> <b>14</b>(12):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34796900 34796900]; doi: [https://dx.doi.org/10.1242/dmm.049285 10.1242/dmm.049285]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34796900 42]. | ||
+ | #Morgenstern M, Peikert CD, Lübbert P, Suppanz I, Klemm C, Alka O, Steiert C, Naumenko N, Schendzielorz A, Melchionda L, Mühlhäuser WWD, Knapp B, Busch JD, Stiller SB, Dannenmaier S, Lindau C, Licheva M, Eickhorst C, Galbusera R, Zerbes RM, Ryan MT, Kraft C, Kozjak-Pavlovic V, Drepper F, Dennerlein S, Oeljeklaus S, Pfanner N, Wiedemann N, Warscheid B, (2021) "Quantitative high-confidence human mitochondrial proteome and its dynamics in cellular context." <i>Cell Metab</i> <b>33</b>(12):2464–2483.e18; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34800366 34800366]; doi: [https://dx.doi.org/10.1016/j.cmet.2021.11.001 10.1016/j.cmet.2021.11.001]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34800366 1024]. | ||
+ | #de Sousa BM, Correia CR, Ferreira JAF, Mano JF, Furlani EP, Soares Dos Santos MP, Vieira SI, (2021) "Capacitive interdigitated system of high osteoinductive/conductive performance for personalized acting-sensing implants." <i>NPJ Regen Med</i> <b>6</b>(1):80; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34815414 34815414]; doi: [https://dx.doi.org/10.1038/s41536-021-00184-6 10.1038/s41536-021-00184-6]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34815414 8]. | ||
+ | #Ding Y, Ding N, Zhang Y, Xie S, Huang M, Ding X, Dong W, Zhang Q, Jiang L, (2021) "MicroRNA-222 Transferred From Semen Extracellular Vesicles Inhibits Sperm Apoptosis by Targeting <i>BCL2L11</i>." <i>Front Cell Dev Biol</i> <b>9</b>:736864; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34820370 34820370]; doi: [https://dx.doi.org/10.3389/fcell.2021.736864 10.3389/fcell.2021.736864]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34820370 8]. | ||
+ | #Rolfs Z, Frey BL, Shi X, Kawai Y, Smith LM, Welham NV, (2021) "An atlas of protein turnover rates in mouse tissues." <i>Nat Commun</i> <b>12</b>(1):6778; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34836951 34836951]; doi: [https://dx.doi.org/10.1038/s41467-021-26842-3 10.1038/s41467-021-26842-3]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34836951 173]. | ||
+ | #Needham EJ, Hingst JR, Parker BL, Morrison KR, Yang G, Onslev J, Kristensen JM, Højlund K, Ling NXY, Oakhill JS, Richter EA, Kiens B, Petersen J, Pehmøller C, James DE, Wojtaszewski JFP, Humphrey SJ, (2021) "Personalized phosphoproteomics identifies functional signaling." <i>Nat Biotechnol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34857927 34857927]; doi: [https://dx.doi.org/10.1038/s41587-021-01099-9 10.1038/s41587-021-01099-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34857927 26]. | ||
+ | #Ziemlińska E, Sobocińska J, Świątkowska A, Hromada-Judycka A, Traczyk G, Malinowska A, Świderska B, Mietelska-Porowska A, Ciesielska A, Kwiatkowska K, (2021) "Palm Oil-Rich Diet Affects Murine Liver Proteome and <i>S</i>-Palmitoylome." <i>Int J Mol Sci</i> <b>22</b>(23):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34884899 34884899]; doi: [https://dx.doi.org/10.3390/ijms222313094 10.3390/ijms222313094]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34884899 24]. | ||
+ | #Taher L, Israel S, Drexler HCA, Makalowski W, Suzuki Y, Fuellen G, Boiani M, (2021) "The proteome, not the transcriptome, predicts that oocyte superovulation affects embryonic phenotypes in mice." <i>Sci Rep</i> <b>11</b>(1):23731; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34887460 34887460]; doi: [https://dx.doi.org/10.1038/s41598-021-03054-9 10.1038/s41598-021-03054-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34887460 28]. | ||
+ | #Almeida N, Rodriguez J, Pla Parada I, Perez-Riverol Y, Woldmar N, Kim Y, Oskolas H, Betancourt L, Valdés JG, Sahlin KB, Pizzatti L, Szasz AM, Kárpáti S, Appelqvist R, Malm J, B Domont G, C S Nogueira F, Marko-Varga G, Sanchez A, (2021) "Mapping the Melanoma Plasma Proteome (MPP) Using Single-Shot Proteomics Interfaced with the WiMT Database." <i>Cancers (Basel)</i> <b>13</b>(24):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34944842 34944842]; doi: [https://dx.doi.org/10.3390/cancers13246224 10.3390/cancers13246224]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34944842 24]. | ||
+ | #Halkoum R, Salnot V, Capallere C, Plaza C, L'Honoré A, Pays K, Friguet B, Nizard C, Petropoulos I, (2021) "Glyoxal induces senescence in human keratinocytes through oxidative stress and activation of the AKT/FOXO3a/p27<sup>KIP1</sup> pathway." <i>J Invest Dermatol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34971698 34971698]; doi: [https://dx.doi.org/10.1016/j.jid.2021.12.022 10.1016/j.jid.2021.12.022]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34971698 4]. |
GPMDB was originally constructed to serve as a reference work for all publicly available proteomics generated using tandem mass spectrometry. Public data is downloaded and reanalyzed using the current version of X! Tandem. The result files generated by the reanalysis and the relevant metadata are imported into the database and made available through the associated web site, ftp site and REST interfaces.
Contents |
The following public data repositories are checked daily for new suitable raw data for reanalysis:
Data made available from specific large projects, such as CPTAC or the Human Proteome Atlas, are also included when they are made available. Every effort is made so that reanalyzed results from all data sources are made available within 48 hours of their being released. In addition, data from lab web sites, ftp sites and direct contributions through the GPM sites made available to researchers are imported into GPMDB as part of a daily incremental update process.
GPMDB has been in operation since Jan. 1, 2004. Several large data source repositories have come into existence and ceased activity in the period since that time. All of the data from those repositories (e.g., TRANCHE, Peptidome) were reanalyzed and stored in GPMDB and they are still available even though the source repository sites are no longer active.
Simply because data is made available does not mean that it will be included in GPMDB. The data must be approved our quality control AI for its initial acceptance and it may be rejected subsequently because of either quality or originality concerns.
CAUTION: Many papers contain serious errors in their Methods sections. When using data from the literature, it is important to be skeptical of any experimental parameter (cell line, tissue type, modification reagents, quantitation methoods, etc.) that may impact on your use of the data. We have tried to correct any obvious errors, but there is no way to guarantee that we found them all. When attempting to analyze or reproduce results, keep in mind the likelyhood that even key parts of the experiment methods may have been recorded incorrectly in the associated manuscript, as methods are rarely reviewed properly in the current journal publication process.
The following is a list of data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list was current, as of Jan 2, 2022.