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#Pladevall-Morera D, Munk S, Ingham A, Garribba L, Albers E, Liu Y, Olsen JV, Lopez-Contreras AJ, (2019) "Proteomic characterization of chromosomal common fragile site (CFS)-associated proteins uncovers ATRX as a regulator of CFS stability." <i>Nucleic Acids Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31180492 31180492]; doi: [https://dx.doi.org/10.1093/nar/gkz510 10.1093/nar/gkz510]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31180492 32]. | #Pladevall-Morera D, Munk S, Ingham A, Garribba L, Albers E, Liu Y, Olsen JV, Lopez-Contreras AJ, (2019) "Proteomic characterization of chromosomal common fragile site (CFS)-associated proteins uncovers ATRX as a regulator of CFS stability." <i>Nucleic Acids Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31180492 31180492]; doi: [https://dx.doi.org/10.1093/nar/gkz510 10.1093/nar/gkz510]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31180492 32]. | ||
#Wang Y, Tatham MH, Schmidt-Heck W, Swann C, Singh-Dolt K, Meseguer-Ripolles J, Lucendo-Villarin B, Kunath T, Rudd TR, Smith AJH, Hengstler JG, Godoy P, Hay RT, Hay DC, (2019) "Multiomics Analyses of HNF4α Protein Domain Function during Human Pluripotent Stem Cell Differentiation." <i>iScience</i> <b>16</b>:206–217; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31185456 31185456]; doi: [https://dx.doi.org/10.1016/j.isci.2019.05.028 10.1016/j.isci.2019.05.028]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31185456 96]. | #Wang Y, Tatham MH, Schmidt-Heck W, Swann C, Singh-Dolt K, Meseguer-Ripolles J, Lucendo-Villarin B, Kunath T, Rudd TR, Smith AJH, Hengstler JG, Godoy P, Hay RT, Hay DC, (2019) "Multiomics Analyses of HNF4α Protein Domain Function during Human Pluripotent Stem Cell Differentiation." <i>iScience</i> <b>16</b>:206–217; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31185456 31185456]; doi: [https://dx.doi.org/10.1016/j.isci.2019.05.028 10.1016/j.isci.2019.05.028]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31185456 96]. | ||
- | # () "" <i></i>; PMID: [ | + | #Brennan CM, Vaites LP, Wells JN, Santaguida S, Paulo JA, Storchova Z, Harper JW, Marsh JA, Amon A, (2019) "Protein aggregation mediates stoichiometry of protein complexes in aneuploid cells." <i>Genes Dev</i> <b>33</b>(15-16):1031–1047; PMID: [https://pubmed.ncbi.nlm.nih.gov/31196865 31196865]; doi: [https://dx.doi.org/10.1101/gad.327494.119 10.1101/gad.327494.119]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31196865 147]. |
#Ma F, Tremmel DM, Li Z, Lietz CB, Sackett SD, Odorico JS, Li L, (2019) "In-depth quantification of extracellular matrix proteins from human pancreas." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31200599 31200599]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00241 10.1021/acs.jproteome.9b00241]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31200599 30]. | #Ma F, Tremmel DM, Li Z, Lietz CB, Sackett SD, Odorico JS, Li L, (2019) "In-depth quantification of extracellular matrix proteins from human pancreas." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31200599 31200599]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00241 10.1021/acs.jproteome.9b00241]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31200599 30]. | ||
#Mendonça CF, Kuras M, Nogueira FCS, Plá I, Hortobágyi T, Csiba L, Palkovits M, Renner É, Döme P, Marko-Varga G, Domont GB, Rezeli M, (2019) "Proteomic signatures of brain regions affected by tau pathology in early and late stages of Alzheimer's disease." <i>Neurobiol Dis</i> <b>130</b>:104509; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31207390 31207390]; doi: [https://dx.doi.org/10.1016/j.nbd.2019.104509 10.1016/j.nbd.2019.104509]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31207390 367]. | #Mendonça CF, Kuras M, Nogueira FCS, Plá I, Hortobágyi T, Csiba L, Palkovits M, Renner É, Döme P, Marko-Varga G, Domont GB, Rezeli M, (2019) "Proteomic signatures of brain regions affected by tau pathology in early and late stages of Alzheimer's disease." <i>Neurobiol Dis</i> <b>130</b>:104509; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31207390 31207390]; doi: [https://dx.doi.org/10.1016/j.nbd.2019.104509 10.1016/j.nbd.2019.104509]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31207390 367]. | ||
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#Storey AJ, Hardman RE, Byrum SD, Mackintosh SG, Edmondson RD, Wahls WP, Tackett AJ, Lewis JA, (2020) "Accurate and Sensitive Quantitation of the Dynamic Heat Shock Proteome Using Tandem Mass Tags." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32027144 32027144]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00704 10.1021/acs.jproteome.9b00704]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32027144 2]. | #Storey AJ, Hardman RE, Byrum SD, Mackintosh SG, Edmondson RD, Wahls WP, Tackett AJ, Lewis JA, (2020) "Accurate and Sensitive Quantitation of the Dynamic Heat Shock Proteome Using Tandem Mass Tags." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32027144 32027144]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00704 10.1021/acs.jproteome.9b00704]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32027144 2]. | ||
#Eldridge MJG, Pereira JM, Impens F, Hamon MA, (2020) "Active nuclear import of the deacetylase Sirtuin-2 is controlled by its C-terminus and importins." <i>Sci Rep</i> <b>10</b>(1):2034; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32042025 32042025]; doi: [https://dx.doi.org/10.1038/s41598-020-58397-6 10.1038/s41598-020-58397-6]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32042025 6]. | #Eldridge MJG, Pereira JM, Impens F, Hamon MA, (2020) "Active nuclear import of the deacetylase Sirtuin-2 is controlled by its C-terminus and importins." <i>Sci Rep</i> <b>10</b>(1):2034; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32042025 32042025]; doi: [https://dx.doi.org/10.1038/s41598-020-58397-6 10.1038/s41598-020-58397-6]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32042025 6]. | ||
- | # () "" <i></i>; PMID: [ | + | #Koehler S, Kuczkowski A, Kuehne L, Jüngst C, Hoehne M, Grahammer F, Eddy S, Kretzler M, Beck BB, Höhfeld J, Schermer B, Benzing T, Brinkkoetter PT, Rinschen MM, (2020) "Proteome Analysis of Isolated Podocytes Reveals Stress Responses in Glomerular Sclerosis." <i>J Am Soc Nephrol</i> <b>31</b>(3):544–559; PMID: [https://pubmed.ncbi.nlm.nih.gov/32047005 32047005]; doi: [https://dx.doi.org/10.1681/ASN.2019030312 10.1681/ASN.2019030312]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32047005 3]. |
#Zhao Q, Laverdure JP, Lanoix J, Durette C, Coté C, Bonneil E, Laumont CM, Gendron P, Vincent K, Courcelles M, Lemieux S, Millar DG, Ohashi PS, Thibault P, Perreault C, (2020) "Proteogenomics uncovers a vast repertoire of shared tumor-specific antigens in ovarian cancer." <i>Cancer Immunol Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32047025 32047025]; doi: [https://dx.doi.org/10.1158/2326-6066.CIR-19-0541 10.1158/2326-6066.CIR-19-0541]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32047025 12]. | #Zhao Q, Laverdure JP, Lanoix J, Durette C, Coté C, Bonneil E, Laumont CM, Gendron P, Vincent K, Courcelles M, Lemieux S, Millar DG, Ohashi PS, Thibault P, Perreault C, (2020) "Proteogenomics uncovers a vast repertoire of shared tumor-specific antigens in ovarian cancer." <i>Cancer Immunol Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32047025 32047025]; doi: [https://dx.doi.org/10.1158/2326-6066.CIR-19-0541 10.1158/2326-6066.CIR-19-0541]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32047025 12]. | ||
#Plum T, Wang X, Rettel M, Krijgsveld J, Feyerabend TB, Rodewald HR, (2020) "Human Mast Cell Proteome Reveals Unique Lineage, Putative Functions, and Structural Basis for Cell Ablation." <i>Immunity</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32049054 32049054]; doi: [https://dx.doi.org/10.1016/j.immuni.2020.01.012 10.1016/j.immuni.2020.01.012]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32049054 12]. | #Plum T, Wang X, Rettel M, Krijgsveld J, Feyerabend TB, Rodewald HR, (2020) "Human Mast Cell Proteome Reveals Unique Lineage, Putative Functions, and Structural Basis for Cell Ablation." <i>Immunity</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32049054 32049054]; doi: [https://dx.doi.org/10.1016/j.immuni.2020.01.012 10.1016/j.immuni.2020.01.012]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32049054 12]. | ||
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#Tannous A, Boonen M, Zheng H, Zhao C, Germain CJ, Moore DF, Sleat DE, Jadot M, Lobel P, (2020) "Comparative Analysis of Quantitative Mass Spectrometric Methods for Subcellular Proteomics." <i>J Proteome Res</i> <b>19</b>(4):1718–1730; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32134668 32134668]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00862 10.1021/acs.jproteome.9b00862]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32134668 25]. | #Tannous A, Boonen M, Zheng H, Zhao C, Germain CJ, Moore DF, Sleat DE, Jadot M, Lobel P, (2020) "Comparative Analysis of Quantitative Mass Spectrometric Methods for Subcellular Proteomics." <i>J Proteome Res</i> <b>19</b>(4):1718–1730; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32134668 32134668]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00862 10.1021/acs.jproteome.9b00862]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32134668 25]. | ||
#Shayan R, Rinaldi D, Larburu N, Plassart L, Balor S, Bouyssié D, Lebaron S, Marcoux J, Gleizes PE, Plisson-Chastang C, (2020) "Good Vibrations: Structural Remodeling of Maturing Yeast Pre-40S Ribosomal Particles Followed by Cryo-Electron Microscopy." <i>Molecules</i> <b>25</b>(5):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32138239 32138239]; doi: [https://dx.doi.org/10.3390/molecules25051125 10.3390/molecules25051125]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32138239 2]. | #Shayan R, Rinaldi D, Larburu N, Plassart L, Balor S, Bouyssié D, Lebaron S, Marcoux J, Gleizes PE, Plisson-Chastang C, (2020) "Good Vibrations: Structural Remodeling of Maturing Yeast Pre-40S Ribosomal Particles Followed by Cryo-Electron Microscopy." <i>Molecules</i> <b>25</b>(5):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32138239 32138239]; doi: [https://dx.doi.org/10.3390/molecules25051125 10.3390/molecules25051125]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32138239 2]. | ||
- | # () "" <i></i>; PMID: [ | + | #Capizzi M, Carpentier R, Denarier E, Adrait A, Kassem R, Mapelli M, Couté Y, Humbert S, (2021) "Developmental defects in Huntington's disease show that axonal growth and microtubule reorganization require NUMA1." <i>Neuron</i>; PMID: [https://pubmed.ncbi.nlm.nih.gov/34793694 34793694]; doi: [https://dx.doi.org/10.1016/j.neuron.2021.10.033 10.1016/j.neuron.2021.10.033] GPMDB: [https://gpmdb.thegpm.org/data/keyword/32139433 8]. |
#Parker BL, Kiens B, Wojtaszewski JFP, Richter EA, James DE, (2020) "Quantification of exercise-regulated ubiquitin signaling in human skeletal muscle identifies protein modification cross talk via NEDDylation." <i>FASEB J</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32141134 32141134]; doi: [https://dx.doi.org/10.1096/fj.202000075R 10.1096/fj.202000075R]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32141134 45]. | #Parker BL, Kiens B, Wojtaszewski JFP, Richter EA, James DE, (2020) "Quantification of exercise-regulated ubiquitin signaling in human skeletal muscle identifies protein modification cross talk via NEDDylation." <i>FASEB J</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32141134 32141134]; doi: [https://dx.doi.org/10.1096/fj.202000075R 10.1096/fj.202000075R]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32141134 45]. | ||
#Wilson JP, Ipsaro JJ, Del Giudice SN, Turna NS, Gauss CM, Dusenbury KH, Marquart K, Rivera KD, Pappin DJ, (2020) "Tryp-N: A Thermostable Protease for the Production of N-terminal Argininyl and Lysinyl Peptides." <i>J Proteome Res</i> <b>19</b>(4):1459–1469; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32141294 32141294]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00713 10.1021/acs.jproteome.9b00713]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32141294 3]. | #Wilson JP, Ipsaro JJ, Del Giudice SN, Turna NS, Gauss CM, Dusenbury KH, Marquart K, Rivera KD, Pappin DJ, (2020) "Tryp-N: A Thermostable Protease for the Production of N-terminal Argininyl and Lysinyl Peptides." <i>J Proteome Res</i> <b>19</b>(4):1459–1469; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32141294 32141294]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00713 10.1021/acs.jproteome.9b00713]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32141294 3]. | ||
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#Ojalill M, Virtanen N, Rappu P, Siljamäki E, Taimen P, Heino J, (2020) "Interaction between prostate cancer cells and prostate fibroblasts promotes accumulation and proteolytic processing of basement membrane proteins." <i>Prostate</i> <b>80</b>(9):715–726; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32364250 32364250]; doi: [https://dx.doi.org/10.1002/pros.23985 10.1002/pros.23985]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32364250 18]. | #Ojalill M, Virtanen N, Rappu P, Siljamäki E, Taimen P, Heino J, (2020) "Interaction between prostate cancer cells and prostate fibroblasts promotes accumulation and proteolytic processing of basement membrane proteins." <i>Prostate</i> <b>80</b>(9):715–726; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32364250 32364250]; doi: [https://dx.doi.org/10.1002/pros.23985 10.1002/pros.23985]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32364250 18]. | ||
#Bekes K, Mitulović G, Meißner N, Resch U, Gruber R, (2020) "Saliva proteomic patterns in patients with molar incisor hypomineralization." <i>Sci Rep</i> <b>10</b>(1):7560; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32371984 32371984]; doi: [https://dx.doi.org/10.1038/s41598-020-64614-z 10.1038/s41598-020-64614-z]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32371984 10]. | #Bekes K, Mitulović G, Meißner N, Resch U, Gruber R, (2020) "Saliva proteomic patterns in patients with molar incisor hypomineralization." <i>Sci Rep</i> <b>10</b>(1):7560; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32371984 32371984]; doi: [https://dx.doi.org/10.1038/s41598-020-64614-z 10.1038/s41598-020-64614-z]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32371984 10]. | ||
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#Pandey K, Mifsud NA, Lim Kam Sian TCC, Ayala R, Ternette N, Ramarathinam SH, Purcell AW, (2020) "In-depth mining of the immunopeptidome of an acute myeloid leukemia cell line using complementary ligand enrichment and data acquisition strategies." <i>Mol Immunol</i> <b>123</b>:7–17; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32387766 32387766]; doi: [https://dx.doi.org/10.1016/j.molimm.2020.04.008 10.1016/j.molimm.2020.04.008]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32387766 140]. | #Pandey K, Mifsud NA, Lim Kam Sian TCC, Ayala R, Ternette N, Ramarathinam SH, Purcell AW, (2020) "In-depth mining of the immunopeptidome of an acute myeloid leukemia cell line using complementary ligand enrichment and data acquisition strategies." <i>Mol Immunol</i> <b>123</b>:7–17; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32387766 32387766]; doi: [https://dx.doi.org/10.1016/j.molimm.2020.04.008 10.1016/j.molimm.2020.04.008]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32387766 140]. | ||
#Chu F, Mason KE, Anex DS, Jones AD, Hart BR, (2020) "Proteomic Characterization of Damaged Single Hairs Recovered after an Explosion for Protein-Based Human Identification." <i>J Proteome Res</i> <b>19</b>(8):3088–3099; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32394717 32394717]; doi: [https://dx.doi.org/10.1021/acs.jproteome.0c00102 10.1021/acs.jproteome.0c00102]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32394717 8]. | #Chu F, Mason KE, Anex DS, Jones AD, Hart BR, (2020) "Proteomic Characterization of Damaged Single Hairs Recovered after an Explosion for Protein-Based Human Identification." <i>J Proteome Res</i> <b>19</b>(8):3088–3099; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32394717 32394717]; doi: [https://dx.doi.org/10.1021/acs.jproteome.0c00102 10.1021/acs.jproteome.0c00102]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32394717 8]. | ||
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#Wong PP, Muñoz-Félix JM, Hijazi M, Kim H, Robinson SD, De Luxán-Delgado B, Rodríguez-Hernández I, Maiques O, Meng YM, Meng Q, Bodrug N, Dukinfield MS, Reynolds LE, Elia G, Clear A, Harwood C, Wang Y, Campbell JJ, Singh R, Zhang P, Schall TJ, Matchett KP, Henderson NC, Szlosarek PW, Dreger SA, Smith S, Jones JL, Gribben JG, Cutillas PR, Meier P, Sanz-Moreno V, Hodivala-Dilke KM, (2020) "Cancer Burden Is Controlled by Mural Cell-β3-Integrin Regulated Crosstalk with Tumor Cells." <i>Cell</i> <b>181</b>(6):1346–1363.e21; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32473126 32473126]; doi: [https://dx.doi.org/10.1016/j.cell.2020.02.003 10.1016/j.cell.2020.02.003]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32473126 18]. | #Wong PP, Muñoz-Félix JM, Hijazi M, Kim H, Robinson SD, De Luxán-Delgado B, Rodríguez-Hernández I, Maiques O, Meng YM, Meng Q, Bodrug N, Dukinfield MS, Reynolds LE, Elia G, Clear A, Harwood C, Wang Y, Campbell JJ, Singh R, Zhang P, Schall TJ, Matchett KP, Henderson NC, Szlosarek PW, Dreger SA, Smith S, Jones JL, Gribben JG, Cutillas PR, Meier P, Sanz-Moreno V, Hodivala-Dilke KM, (2020) "Cancer Burden Is Controlled by Mural Cell-β3-Integrin Regulated Crosstalk with Tumor Cells." <i>Cell</i> <b>181</b>(6):1346–1363.e21; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32473126 32473126]; doi: [https://dx.doi.org/10.1016/j.cell.2020.02.003 10.1016/j.cell.2020.02.003]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32473126 18]. | ||
#Macron C, Lavigne R, Núñez Galindo A, Affolter M, Pineau C, Dayon L, (2020) "Exploration of human cerebrospinal fluid: A large proteome dataset revealed by trapped ion mobility time-of-flight mass spectrometry." <i>Data Brief</i> <b>31</b>:105704; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32478154 32478154]; doi: [https://dx.doi.org/10.1016/j.dib.2020.105704 10.1016/j.dib.2020.105704]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32478154 1]. | #Macron C, Lavigne R, Núñez Galindo A, Affolter M, Pineau C, Dayon L, (2020) "Exploration of human cerebrospinal fluid: A large proteome dataset revealed by trapped ion mobility time-of-flight mass spectrometry." <i>Data Brief</i> <b>31</b>:105704; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32478154 32478154]; doi: [https://dx.doi.org/10.1016/j.dib.2020.105704 10.1016/j.dib.2020.105704]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32478154 1]. | ||
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#Couté Y, Kraut A, Zimmermann C, Büscher N, Hesse AM, Bruley C, De Andrea M, Wangen C, Hahn F, Marschall M, Plachter B, (2020) "Mass Spectrometry-Based Characterization of the Virion Proteome, Phosphoproteome, and Associated Kinase Activity of Human Cytomegalovirus." <i>Microorganisms</i> <b>8</b>(6):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32486127 32486127]; doi: [https://dx.doi.org/10.3390/microorganisms8060820 10.3390/microorganisms8060820]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32486127 6]. | #Couté Y, Kraut A, Zimmermann C, Büscher N, Hesse AM, Bruley C, De Andrea M, Wangen C, Hahn F, Marschall M, Plachter B, (2020) "Mass Spectrometry-Based Characterization of the Virion Proteome, Phosphoproteome, and Associated Kinase Activity of Human Cytomegalovirus." <i>Microorganisms</i> <b>8</b>(6):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32486127 32486127]; doi: [https://dx.doi.org/10.3390/microorganisms8060820 10.3390/microorganisms8060820]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32486127 6]. | ||
#Goecker ZC, Salemi MR, Karim N, Phinney BS, Rice RH, Parker GJ, (2020) "Optimal processing for proteomic genotyping of single human hairs." <i>Forensic Sci Int Genet</i> <b>47</b>:102314; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32505640 32505640]; doi: [https://dx.doi.org/10.1016/j.fsigen.2020.102314 10.1016/j.fsigen.2020.102314]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32505640 130]. | #Goecker ZC, Salemi MR, Karim N, Phinney BS, Rice RH, Parker GJ, (2020) "Optimal processing for proteomic genotyping of single human hairs." <i>Forensic Sci Int Genet</i> <b>47</b>:102314; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32505640 32505640]; doi: [https://dx.doi.org/10.1016/j.fsigen.2020.102314 10.1016/j.fsigen.2020.102314]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32505640 130]. | ||
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#Locard-Paulet M, Voisinne G, Froment C, Goncalves Menoita M, Ounoughene Y, Girard L, Gregoire C, Mori D, Martinez M, Luche H, Garin J, Malissen M, Burlet-Schiltz O, Malissen B, Gonzalez de Peredo A, Roncagalli R, (2020) "LymphoAtlas: a dynamic and integrated phosphoproteomic resource of TCR signaling in primary T cells reveals ITSN2 as a regulator of effector functions." <i>Mol Syst Biol</i> <b>16</b>(7):e9524; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32618424 32618424]; doi: [https://dx.doi.org/10.15252/msb.20209524 10.15252/msb.20209524]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32618424 108]. | #Locard-Paulet M, Voisinne G, Froment C, Goncalves Menoita M, Ounoughene Y, Girard L, Gregoire C, Mori D, Martinez M, Luche H, Garin J, Malissen M, Burlet-Schiltz O, Malissen B, Gonzalez de Peredo A, Roncagalli R, (2020) "LymphoAtlas: a dynamic and integrated phosphoproteomic resource of TCR signaling in primary T cells reveals ITSN2 as a regulator of effector functions." <i>Mol Syst Biol</i> <b>16</b>(7):e9524; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32618424 32618424]; doi: [https://dx.doi.org/10.15252/msb.20209524 10.15252/msb.20209524]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32618424 108]. | ||
#Oh S, Yeom J, Cho HJ, Kim JH, Yoon SJ, Kim H, Sa JK, Ju S, Lee H, Oh MJ, Lee W, Kwon Y, Li H, Choi S, Han JH, Chang JH, Choi E, Kim J, Her NG, Kim SH, Kang SG, Paek E, Nam DH, Lee C, Kim HS, (2020) "Integrated pharmaco-proteogenomics defines two subgroups in isocitrate dehydrogenase wild-type glioblastoma with prognostic and therapeutic opportunities." <i>Nat Commun</i> <b>11</b>(1):3288; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32620753 32620753]; doi: [https://dx.doi.org/10.1038/s41467-020-17139-y 10.1038/s41467-020-17139-y]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32620753 18]. | #Oh S, Yeom J, Cho HJ, Kim JH, Yoon SJ, Kim H, Sa JK, Ju S, Lee H, Oh MJ, Lee W, Kwon Y, Li H, Choi S, Han JH, Chang JH, Choi E, Kim J, Her NG, Kim SH, Kang SG, Paek E, Nam DH, Lee C, Kim HS, (2020) "Integrated pharmaco-proteogenomics defines two subgroups in isocitrate dehydrogenase wild-type glioblastoma with prognostic and therapeutic opportunities." <i>Nat Commun</i> <b>11</b>(1):3288; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32620753 32620753]; doi: [https://dx.doi.org/10.1038/s41467-020-17139-y 10.1038/s41467-020-17139-y]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32620753 18]. | ||
- | # () "" <i></i>; PMID: [ | + | #Hanses U, Kleinsorge M, Roos L, Yigit G, Li Y, Barbarics B, El-Battrawy I, Lan H, Tiburcy M, Hindmarsh R, Lenz C, Salinas G, Diecke S, Müller C, Adham I, Altmüller J, Nürnberg P, Paul T, Zimmermann WH, Hasenfuss G, Wollnik B, Cyganek L, (2020) "Intronic CRISPR Repair in a Preclinical Model of Noonan Syndrome-Associated Cardiomyopathy." <i>Circulation</i> <b>142</b>(11):1059–1076; PMID: [https://pubmed.ncbi.nlm.nih.gov/32623905 32623905]; doi: [https://dx.doi.org/10.1161/CIRCULATIONAHA.119.044794 10.1161/CIRCULATIONAHA.119.044794]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32623905 456]. |
#Wood AJ, Vassallo AM, Ruchaud-Sparagano MH, Scott J, Zinnato C, Gonzalez-Tejedo C, Kishore K, D'Santos CS, Simpson AJ, Menon DK, Summers C, Chilvers ER, Okkenhaug K, Morris AC, (2020) "C5a impairs phagosomal maturation in the neutrophil through phosphoproteomic remodeling." <i>JCI Insight</i> <b>5</b>(15):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32634128 32634128]; doi: [https://dx.doi.org/10.1172/jci.insight.137029 10.1172/jci.insight.137029]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32634128 30]. | #Wood AJ, Vassallo AM, Ruchaud-Sparagano MH, Scott J, Zinnato C, Gonzalez-Tejedo C, Kishore K, D'Santos CS, Simpson AJ, Menon DK, Summers C, Chilvers ER, Okkenhaug K, Morris AC, (2020) "C5a impairs phagosomal maturation in the neutrophil through phosphoproteomic remodeling." <i>JCI Insight</i> <b>5</b>(15):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32634128 32634128]; doi: [https://dx.doi.org/10.1172/jci.insight.137029 10.1172/jci.insight.137029]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32634128 30]. | ||
#Zhang Y, Liu Y, Jia Y, Zhao Y, Ma C, Bao X, Meng X, Dou W, Wang X, Ge W, (2020) "Proteomic profiling of sclerotic hippocampus revealed dysregulated packaging of vesicular neurotransmitters in temporal lobe epilepsy." <i>Epilepsy Res</i> <b>166</b>:106412; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32668389 32668389]; doi: [https://dx.doi.org/10.1016/j.eplepsyres.2020.106412 10.1016/j.eplepsyres.2020.106412]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32668389 1]. | #Zhang Y, Liu Y, Jia Y, Zhao Y, Ma C, Bao X, Meng X, Dou W, Wang X, Ge W, (2020) "Proteomic profiling of sclerotic hippocampus revealed dysregulated packaging of vesicular neurotransmitters in temporal lobe epilepsy." <i>Epilepsy Res</i> <b>166</b>:106412; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32668389 32668389]; doi: [https://dx.doi.org/10.1016/j.eplepsyres.2020.106412 10.1016/j.eplepsyres.2020.106412]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32668389 1]. | ||
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#van Gelder CAGH, Penning R, Veth TS, Catsburg LAE, Hoogenraad CC, MacGillavry HD, Altelaar M, (2020) "Temporal Quantitative Proteomics of mGluR-induced Protein Translation and Phosphorylation in Neurons." <i>Mol Cell Proteomics</i> <b>19</b>(12):1952–1968; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32912969 32912969]; doi: [https://dx.doi.org/10.1074/mcp.RA120.002199 10.1074/mcp.RA120.002199]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32912969 20]. | #van Gelder CAGH, Penning R, Veth TS, Catsburg LAE, Hoogenraad CC, MacGillavry HD, Altelaar M, (2020) "Temporal Quantitative Proteomics of mGluR-induced Protein Translation and Phosphorylation in Neurons." <i>Mol Cell Proteomics</i> <b>19</b>(12):1952–1968; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32912969 32912969]; doi: [https://dx.doi.org/10.1074/mcp.RA120.002199 10.1074/mcp.RA120.002199]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32912969 20]. | ||
#Jiang L, Wang M, Lin S, Jian R, Li X, Chan J, Dong G, Fang H, Robinson AE, GTEx Consortium., Snyder MP, (2020) "A Quantitative Proteome Map of the Human Body." <i>Cell</i> <b>183</b>(1):269–283.e19; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32916130 32916130]; doi: [https://dx.doi.org/10.1016/j.cell.2020.08.036 10.1016/j.cell.2020.08.036]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32916130 35]. | #Jiang L, Wang M, Lin S, Jian R, Li X, Chan J, Dong G, Fang H, Robinson AE, GTEx Consortium., Snyder MP, (2020) "A Quantitative Proteome Map of the Human Body." <i>Cell</i> <b>183</b>(1):269–283.e19; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32916130 32916130]; doi: [https://dx.doi.org/10.1016/j.cell.2020.08.036 10.1016/j.cell.2020.08.036]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32916130 35]. | ||
- | # () "" <i></i>; PMID: [ | + | #Cao S, Huang S, Guo Y, Zhou L, Lu Y, Lai S, (2020) "Proteomic-based identification of oocyte maturation-related proteins in mouse germinal vesicle oocytes." <i>Reprod Domest Anim</i> <b>55</b>(11):1607–1618; PMID: [https://pubmed.ncbi.nlm.nih.gov/32920902 32920902]; doi: [https://dx.doi.org/10.1111/rda.13819 10.1111/rda.13819]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32920902 30]. |
#Uyy E, Suica VI, Boteanu RM, Safciuc F, Cerveanu-Hogas A, Ivan L, Stavaru C, Simionescu M, Antohe F, (2020) "Diabetic nephropathy associates with deregulation of enzymes involved in kidney sulphur metabolism." <i>J Cell Mol Med</i> <b>24</b>(20):12131–12140; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32935914 32935914]; doi: [https://dx.doi.org/10.1111/jcmm.15855 10.1111/jcmm.15855]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32935914 95]. | #Uyy E, Suica VI, Boteanu RM, Safciuc F, Cerveanu-Hogas A, Ivan L, Stavaru C, Simionescu M, Antohe F, (2020) "Diabetic nephropathy associates with deregulation of enzymes involved in kidney sulphur metabolism." <i>J Cell Mol Med</i> <b>24</b>(20):12131–12140; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32935914 32935914]; doi: [https://dx.doi.org/10.1111/jcmm.15855 10.1111/jcmm.15855]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32935914 95]. | ||
#Faridi P, Woods K, Ostrouska S, Deceneux C, Aranha R, Duscharla D, Wong SQ, Chen W, Ramarathinam SH, Lim Kam Sian TCC, Croft NP, Li C, Ayala R, Cebon JS, Purcell AW, Schittenhelm RB, Behren A, (2020) "Spliced Peptides and Cytokine-Driven Changes in the Immunopeptidome of Melanoma." <i>Cancer Immunol Res</i> <b>8</b>(10):1322–1334; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32938616 32938616]; doi: [https://dx.doi.org/10.1158/2326-6066.CIR-19-0894 10.1158/2326-6066.CIR-19-0894]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32938616 108]. | #Faridi P, Woods K, Ostrouska S, Deceneux C, Aranha R, Duscharla D, Wong SQ, Chen W, Ramarathinam SH, Lim Kam Sian TCC, Croft NP, Li C, Ayala R, Cebon JS, Purcell AW, Schittenhelm RB, Behren A, (2020) "Spliced Peptides and Cytokine-Driven Changes in the Immunopeptidome of Melanoma." <i>Cancer Immunol Res</i> <b>8</b>(10):1322–1334; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32938616 32938616]; doi: [https://dx.doi.org/10.1158/2326-6066.CIR-19-0894 10.1158/2326-6066.CIR-19-0894]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32938616 108]. | ||
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#O'Neill JS, Hoyle NP, Robertson JB, Edgar RS, Beale AD, Peak-Chew SY, Day J, Costa ASH, Frezza C, Causton HC, (2020) "Eukaryotic cell biology is temporally coordinated to support the energetic demands of protein homeostasis." <i>Nat Commun</i> <b>11</b>(1):4706; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32943618 32943618]; doi: [https://dx.doi.org/10.1038/s41467-020-18330-x 10.1038/s41467-020-18330-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32943618 84]. | #O'Neill JS, Hoyle NP, Robertson JB, Edgar RS, Beale AD, Peak-Chew SY, Day J, Costa ASH, Frezza C, Causton HC, (2020) "Eukaryotic cell biology is temporally coordinated to support the energetic demands of protein homeostasis." <i>Nat Commun</i> <b>11</b>(1):4706; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32943618 32943618]; doi: [https://dx.doi.org/10.1038/s41467-020-18330-x 10.1038/s41467-020-18330-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32943618 84]. | ||
#Lee-Law PY, Olaizola P, Caballero-Camino FJ, Izquierdo-Sanchez L, Rodrigues PM, Santos-Laso A, Azkargorta M, Elortza F, Martinez-Chantar ML, Perugorria MJ, Aspichueta P, Marzioni M, LaRusso NF, Bujanda L, Drenth JPH, Banales JM, (2021) "Targeting UBC9-mediated protein hyper-SUMOylation in cystic cholangiocytes halts polycystic liver disease in experimental models." <i>J Hepatol</i> <b>74</b>(2):394–406; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32950589 32950589]; doi: [https://dx.doi.org/10.1016/j.jhep.2020.09.010 10.1016/j.jhep.2020.09.010]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32950589 49]. | #Lee-Law PY, Olaizola P, Caballero-Camino FJ, Izquierdo-Sanchez L, Rodrigues PM, Santos-Laso A, Azkargorta M, Elortza F, Martinez-Chantar ML, Perugorria MJ, Aspichueta P, Marzioni M, LaRusso NF, Bujanda L, Drenth JPH, Banales JM, (2021) "Targeting UBC9-mediated protein hyper-SUMOylation in cystic cholangiocytes halts polycystic liver disease in experimental models." <i>J Hepatol</i> <b>74</b>(2):394–406; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32950589 32950589]; doi: [https://dx.doi.org/10.1016/j.jhep.2020.09.010 10.1016/j.jhep.2020.09.010]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32950589 49]. | ||
- | # () "" <i></i>; PMID: [ | + | # () "" <i></i>; PMID: [https://pubmed.ncbi.nlm.nih.gov/32963033 32963033]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32963033 133]. |
#Liu JJ, Chiu YT, Chen C, Huang P, Mann M, Liu-Chen LY, (2020) "Pharmacological and phosphoproteomic approaches to roles of protein kinase C in kappa opioid receptor-mediated effects in mice." <i>Neuropharmacology</i> <b>181</b>:108324; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32976891 32976891]; doi: [https://dx.doi.org/10.1016/j.neuropharm.2020.108324 10.1016/j.neuropharm.2020.108324]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32976891 67]. | #Liu JJ, Chiu YT, Chen C, Huang P, Mann M, Liu-Chen LY, (2020) "Pharmacological and phosphoproteomic approaches to roles of protein kinase C in kappa opioid receptor-mediated effects in mice." <i>Neuropharmacology</i> <b>181</b>:108324; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32976891 32976891]; doi: [https://dx.doi.org/10.1016/j.neuropharm.2020.108324 10.1016/j.neuropharm.2020.108324]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32976891 67]. | ||
#Schumacher N, Yan K, Gandraß M, Müller M, Krisp C, Häsler R, Carambia A, Nofer JR, Bernardes JP, Khouja M, Thomsen I, Chalupsky K, Bolik J, Hölscher C, Wunderlich T, Herkel J, Rosenstiel P, Schramm C, Schlüter H, Renné T, Mittrücker HW, Rose-John S, Schmidt-Arras D, (2021) "Cell-autonomous hepatocyte-specific GP130 signaling is sufficient to trigger a robust innate immune response in mice." <i>J Hepatol</i> <b>74</b>(2):407–418; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32987028 32987028]; doi: [https://dx.doi.org/10.1016/j.jhep.2020.09.021 10.1016/j.jhep.2020.09.021]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32987028 1]. | #Schumacher N, Yan K, Gandraß M, Müller M, Krisp C, Häsler R, Carambia A, Nofer JR, Bernardes JP, Khouja M, Thomsen I, Chalupsky K, Bolik J, Hölscher C, Wunderlich T, Herkel J, Rosenstiel P, Schramm C, Schlüter H, Renné T, Mittrücker HW, Rose-John S, Schmidt-Arras D, (2021) "Cell-autonomous hepatocyte-specific GP130 signaling is sufficient to trigger a robust innate immune response in mice." <i>J Hepatol</i> <b>74</b>(2):407–418; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32987028 32987028]; doi: [https://dx.doi.org/10.1016/j.jhep.2020.09.021 10.1016/j.jhep.2020.09.021]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32987028 1]. | ||
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#Bassal M, Abukhalaf M, Majovsky P, Thieme D, Herr T, Ayash M, Tabassum N, Al Shweiki MR, Proksch C, Hmedat A, Ziegler J, Lee J, Neumann S, Hoehenwarter W, (2020) "Reshaping of the Arabidopsis thaliana Proteome Landscape and Co-regulation of Proteins in Development and Immunity." <i>Mol Plant</i> <b>13</b>(12):1709–1732; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33007468 33007468]; doi: [https://dx.doi.org/10.1016/j.molp.2020.09.024 10.1016/j.molp.2020.09.024]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33007468 86]. | #Bassal M, Abukhalaf M, Majovsky P, Thieme D, Herr T, Ayash M, Tabassum N, Al Shweiki MR, Proksch C, Hmedat A, Ziegler J, Lee J, Neumann S, Hoehenwarter W, (2020) "Reshaping of the Arabidopsis thaliana Proteome Landscape and Co-regulation of Proteins in Development and Immunity." <i>Mol Plant</i> <b>13</b>(12):1709–1732; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33007468 33007468]; doi: [https://dx.doi.org/10.1016/j.molp.2020.09.024 10.1016/j.molp.2020.09.024]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33007468 86]. | ||
#Gabaev I, Williamson JC, Crozier TWM, Schulz TF, Lehner PJ, (2020) "Quantitative Proteomics Analysis of Lytic KSHV Infection in Human Endothelial Cells Reveals Targets of Viral Immune Modulation." <i>Cell Rep</i> <b>33</b>(2):108249; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33053346 33053346]; doi: [https://dx.doi.org/10.1016/j.celrep.2020.108249 10.1016/j.celrep.2020.108249]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33053346 1]. | #Gabaev I, Williamson JC, Crozier TWM, Schulz TF, Lehner PJ, (2020) "Quantitative Proteomics Analysis of Lytic KSHV Infection in Human Endothelial Cells Reveals Targets of Viral Immune Modulation." <i>Cell Rep</i> <b>33</b>(2):108249; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33053346 33053346]; doi: [https://dx.doi.org/10.1016/j.celrep.2020.108249 10.1016/j.celrep.2020.108249]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33053346 1]. | ||
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#Leng L, Cao R, Ma J, Mou D, Zhu Y, Li W, Lv L, Gao D, Zhang S, Gong F, Zhao L, Qiu B, Xiang H, Hu Z, Feng Y, Dai Y, Zhao J, Wu Z, Li H, Zhong W, (2020) "Pathological features of COVID-19-associated lung injury: a preliminary proteomics report based on clinical samples." <i>Signal Transduct Target Ther</i> <b>5</b>(1):240; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33060566 33060566]; doi: [https://dx.doi.org/10.1038/s41392-020-00355-9 10.1038/s41392-020-00355-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33060566 13]. | #Leng L, Cao R, Ma J, Mou D, Zhu Y, Li W, Lv L, Gao D, Zhang S, Gong F, Zhao L, Qiu B, Xiang H, Hu Z, Feng Y, Dai Y, Zhao J, Wu Z, Li H, Zhong W, (2020) "Pathological features of COVID-19-associated lung injury: a preliminary proteomics report based on clinical samples." <i>Signal Transduct Target Ther</i> <b>5</b>(1):240; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33060566 33060566]; doi: [https://dx.doi.org/10.1038/s41392-020-00355-9 10.1038/s41392-020-00355-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33060566 13]. | ||
#Demmers LC, Kretzschmar K, Van Hoeck A, Bar-Epraïm YE, van den Toorn HWP, Koomen M, van Son G, van Gorp J, Pronk A, Smakman N, Cuppen E, Clevers H, Heck AJR, Wu W, (2020) "Single-cell derived tumor organoids display diversity in HLA class I peptide presentation." <i>Nat Commun</i> <b>11</b>(1):5338; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33087703 33087703]; doi: [https://dx.doi.org/10.1038/s41467-020-19142-9 10.1038/s41467-020-19142-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33087703 24]. | #Demmers LC, Kretzschmar K, Van Hoeck A, Bar-Epraïm YE, van den Toorn HWP, Koomen M, van Son G, van Gorp J, Pronk A, Smakman N, Cuppen E, Clevers H, Heck AJR, Wu W, (2020) "Single-cell derived tumor organoids display diversity in HLA class I peptide presentation." <i>Nat Commun</i> <b>11</b>(1):5338; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33087703 33087703]; doi: [https://dx.doi.org/10.1038/s41467-020-19142-9 10.1038/s41467-020-19142-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33087703 24]. | ||
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#Hu Z, Wang X, Li D, Cao L, Cui H, Xu G, (2021) "UFBP1, a key component in ufmylation, enhances drug sensitivity by promoting proteasomal degradation of oxidative stress-response transcription factor Nrf2." <i>Oncogene</i> <b>40</b>(3):647–662; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33219317 33219317]; doi: [https://dx.doi.org/10.1038/s41388-020-01551-1 10.1038/s41388-020-01551-1]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33219317 3]. | #Hu Z, Wang X, Li D, Cao L, Cui H, Xu G, (2021) "UFBP1, a key component in ufmylation, enhances drug sensitivity by promoting proteasomal degradation of oxidative stress-response transcription factor Nrf2." <i>Oncogene</i> <b>40</b>(3):647–662; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33219317 33219317]; doi: [https://dx.doi.org/10.1038/s41388-020-01551-1 10.1038/s41388-020-01551-1]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33219317 3]. | ||
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#Braun F, Rinschen M, Buchner D, Bohl K, Plagmann I, Bachurski D, Richard Späth M, Antczak P, Göbel H, Klein C, Lackmann JW, Kretz O, Puelles VG, Wahba R, Hallek M, Schermer B, Benzing T, Huber TB, Beyer A, Stippel D, Kurschat CE, Müller RU, (2020) "The proteomic landscape of small urinary extracellular vesicles during kidney transplantation." <i>J Extracell Vesicles</i> <b>10</b>(1):e12026; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33304478 33304478]; doi: [https://dx.doi.org/10.1002/jev2.12026 10.1002/jev2.12026]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33304478 89]. | #Braun F, Rinschen M, Buchner D, Bohl K, Plagmann I, Bachurski D, Richard Späth M, Antczak P, Göbel H, Klein C, Lackmann JW, Kretz O, Puelles VG, Wahba R, Hallek M, Schermer B, Benzing T, Huber TB, Beyer A, Stippel D, Kurschat CE, Müller RU, (2020) "The proteomic landscape of small urinary extracellular vesicles during kidney transplantation." <i>J Extracell Vesicles</i> <b>10</b>(1):e12026; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33304478 33304478]; doi: [https://dx.doi.org/10.1002/jev2.12026 10.1002/jev2.12026]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33304478 89]. | ||
#Bailey A, Nicholas B, Darley R, Parkinson E, Teo Y, Aleksic M, Maxwell G, Elliott T, Ardern-Jones M, Skipp P, (2021) "Characterization of the Class I MHC Peptidome Resulting From DNCB Exposure of HaCaT Cells." <i>Toxicol Sci</i> <b>180</b>(1):136–147; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33372950 33372950]; doi: [https://dx.doi.org/10.1093/toxsci/kfaa184 10.1093/toxsci/kfaa184]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33372950 35]. | #Bailey A, Nicholas B, Darley R, Parkinson E, Teo Y, Aleksic M, Maxwell G, Elliott T, Ardern-Jones M, Skipp P, (2021) "Characterization of the Class I MHC Peptidome Resulting From DNCB Exposure of HaCaT Cells." <i>Toxicol Sci</i> <b>180</b>(1):136–147; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33372950 33372950]; doi: [https://dx.doi.org/10.1093/toxsci/kfaa184 10.1093/toxsci/kfaa184]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33372950 35]. | ||
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#Osório H, Silva C, Ferreira M, Gullo I, Máximo V, Barros R, Mendonça F, Oliveira C, Carneiro F, (2021) "Proteomics Analysis of Gastric Cancer Patients with Diabetes Mellitus." <i>J Clin Med</i> <b>10</b>(3):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33494396 33494396]; doi: [https://dx.doi.org/10.3390/jcm10030407 10.3390/jcm10030407]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33494396 40]. | #Osório H, Silva C, Ferreira M, Gullo I, Máximo V, Barros R, Mendonça F, Oliveira C, Carneiro F, (2021) "Proteomics Analysis of Gastric Cancer Patients with Diabetes Mellitus." <i>J Clin Med</i> <b>10</b>(3):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33494396 33494396]; doi: [https://dx.doi.org/10.3390/jcm10030407 10.3390/jcm10030407]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33494396 40]. | ||
#Amer N, Taha H, Hesham D, Al-Shehaby N, Mosaab A, Soudy M, Osama A, Mahmoud N, Elayadi M, Youssef A, Elbeltagy M, Zaghloul MS, Magdeldin S, Sayed AA, El-Naggar S, (2021) "Aggresomes predict poor outcomes and implicate proteostasis in the pathogenesis of pediatric choroid plexus tumors." <i>J Neurooncol</i> <b>152</b>(1):67–78; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33501605 33501605]; doi: [https://dx.doi.org/10.1007/s11060-020-03694-3 10.1007/s11060-020-03694-3]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33501605 84]. | #Amer N, Taha H, Hesham D, Al-Shehaby N, Mosaab A, Soudy M, Osama A, Mahmoud N, Elayadi M, Youssef A, Elbeltagy M, Zaghloul MS, Magdeldin S, Sayed AA, El-Naggar S, (2021) "Aggresomes predict poor outcomes and implicate proteostasis in the pathogenesis of pediatric choroid plexus tumors." <i>J Neurooncol</i> <b>152</b>(1):67–78; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33501605 33501605]; doi: [https://dx.doi.org/10.1007/s11060-020-03694-3 10.1007/s11060-020-03694-3]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33501605 84]. | ||
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#Yang F, Liu Q, Chen Y, Ye H, Wang H, Zeng S, (2020) "Integrative Proteomic and Phosphoproteomic Analyses of Granulosa Cells During Follicular Atresia in Porcine." <i>Front Cell Dev Biol</i> <b>8</b>:624985; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33520998 33520998]; doi: [https://dx.doi.org/10.3389/fcell.2020.624985 10.3389/fcell.2020.624985]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33520998 77]. | #Yang F, Liu Q, Chen Y, Ye H, Wang H, Zeng S, (2020) "Integrative Proteomic and Phosphoproteomic Analyses of Granulosa Cells During Follicular Atresia in Porcine." <i>Front Cell Dev Biol</i> <b>8</b>:624985; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33520998 33520998]; doi: [https://dx.doi.org/10.3389/fcell.2020.624985 10.3389/fcell.2020.624985]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33520998 77]. | ||
#Aravamudhan S, Türk C, Bock T, Keufgens L, Nolte H, Lang F, Krishnan RK, König T, Hammerschmidt P, Schindler N, Brodesser S, Rozsivalova DH, Rugarli E, Trifunovic A, Brüning J, Langer T, Braun T, Krüger M, (2021) "Phosphoproteomics of the developing heart identifies PERM1 - An outer mitochondrial membrane protein." <i>J Mol Cell Cardiol</i> <b>154</b>:41–59; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33549681 33549681]; doi: [https://dx.doi.org/10.1016/j.yjmcc.2021.01.010 10.1016/j.yjmcc.2021.01.010]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33549681 104]. | #Aravamudhan S, Türk C, Bock T, Keufgens L, Nolte H, Lang F, Krishnan RK, König T, Hammerschmidt P, Schindler N, Brodesser S, Rozsivalova DH, Rugarli E, Trifunovic A, Brüning J, Langer T, Braun T, Krüger M, (2021) "Phosphoproteomics of the developing heart identifies PERM1 - An outer mitochondrial membrane protein." <i>J Mol Cell Cardiol</i> <b>154</b>:41–59; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33549681 33549681]; doi: [https://dx.doi.org/10.1016/j.yjmcc.2021.01.010 10.1016/j.yjmcc.2021.01.010]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33549681 104]. | ||
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#Yuan S, Liao G, Zhang M, Zhu Y, Wang K, Xiao W, Jia C, Dong M, Sun N, Walch A, Xu P, Zhang J, Deng Q, Hu R, (2021) "Translatomic profiling reveals novel self-restricting virus-host interactions during HBV infection." <i>J Hepatol</i> <b>75</b>(1):74–85; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33621634 33621634]; doi: [https://dx.doi.org/10.1016/j.jhep.2021.02.009 10.1016/j.jhep.2021.02.009]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33621634 3]. | #Yuan S, Liao G, Zhang M, Zhu Y, Wang K, Xiao W, Jia C, Dong M, Sun N, Walch A, Xu P, Zhang J, Deng Q, Hu R, (2021) "Translatomic profiling reveals novel self-restricting virus-host interactions during HBV infection." <i>J Hepatol</i> <b>75</b>(1):74–85; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33621634 33621634]; doi: [https://dx.doi.org/10.1016/j.jhep.2021.02.009 10.1016/j.jhep.2021.02.009]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33621634 3]. | ||
#Gassaway BM, Paulo JA, Gygi SP, (2021) "Categorization of Phosphorylation Site Behavior during the Diauxic Shift in <i>Saccharomyces cerevisiae</i>." <i>J Proteome Res</i> <b>20</b>(5):2487–2496; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33630598 33630598]; doi: [https://dx.doi.org/10.1021/acs.jproteome.0c00943 10.1021/acs.jproteome.0c00943]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33630598 42]. | #Gassaway BM, Paulo JA, Gygi SP, (2021) "Categorization of Phosphorylation Site Behavior during the Diauxic Shift in <i>Saccharomyces cerevisiae</i>." <i>J Proteome Res</i> <b>20</b>(5):2487–2496; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33630598 33630598]; doi: [https://dx.doi.org/10.1021/acs.jproteome.0c00943 10.1021/acs.jproteome.0c00943]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33630598 42]. | ||
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#Wegler C, Matsson P, Krogstad V, Urdzik J, Christensen H, Andersson TB, Artursson P, (2021) "Influence of Proteome Profiles and Intracellular Drug Exposure on Differences in CYP Activity in Donor-Matched Human Liver Microsomes and Hepatocytes." <i>Mol Pharm</i> <b>18</b>(4):1792–1805; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33739838 33739838]; doi: [https://dx.doi.org/10.1021/acs.molpharmaceut.1c00053 10.1021/acs.molpharmaceut.1c00053]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33739838 93]. | #Wegler C, Matsson P, Krogstad V, Urdzik J, Christensen H, Andersson TB, Artursson P, (2021) "Influence of Proteome Profiles and Intracellular Drug Exposure on Differences in CYP Activity in Donor-Matched Human Liver Microsomes and Hepatocytes." <i>Mol Pharm</i> <b>18</b>(4):1792–1805; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33739838 33739838]; doi: [https://dx.doi.org/10.1021/acs.molpharmaceut.1c00053 10.1021/acs.molpharmaceut.1c00053]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33739838 93]. | ||
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#Carruthers NJ, Strieder-Barboza C, Caruso JA, Flesher CG, Baker NA, Kerk SA, Ky A, Ehlers AP, Varban OA, Lyssiotis CA, Lumeng CN, Stemmer PM, O'Rourke RW, (2021) "The human type 2 diabetes-specific visceral adipose tissue proteome and transcriptome in obesity." <i>Sci Rep</i> <b>11</b>(1):17394; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34462518 34462518]; doi: [https://dx.doi.org/10.1038/s41598-021-96995-0 10.1038/s41598-021-96995-0]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34462518 20]. | #Carruthers NJ, Strieder-Barboza C, Caruso JA, Flesher CG, Baker NA, Kerk SA, Ky A, Ehlers AP, Varban OA, Lyssiotis CA, Lumeng CN, Stemmer PM, O'Rourke RW, (2021) "The human type 2 diabetes-specific visceral adipose tissue proteome and transcriptome in obesity." <i>Sci Rep</i> <b>11</b>(1):17394; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34462518 34462518]; doi: [https://dx.doi.org/10.1038/s41598-021-96995-0 10.1038/s41598-021-96995-0]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34462518 20]. | ||
#Wang H, Zhang Y, Guan X, Li X, Zhao Z, Gao Y, Zhang X, Chen R, (2021) "An Integrated Transcriptomics and Proteomics Analysis Implicates lncRNA MALAT1 in the Regulation of Lipid Metabolism." <i>Mol Cell Proteomics</i> <b>20</b>:100141; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34478876 34478876]; doi: [https://dx.doi.org/10.1016/j.mcpro.2021.100141 10.1016/j.mcpro.2021.100141]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34478876 6]. | #Wang H, Zhang Y, Guan X, Li X, Zhao Z, Gao Y, Zhang X, Chen R, (2021) "An Integrated Transcriptomics and Proteomics Analysis Implicates lncRNA MALAT1 in the Regulation of Lipid Metabolism." <i>Mol Cell Proteomics</i> <b>20</b>:100141; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34478876 34478876]; doi: [https://dx.doi.org/10.1016/j.mcpro.2021.100141 10.1016/j.mcpro.2021.100141]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34478876 6]. | ||
- | # () "" <i></i>; PMID: [ | + | #Frankovsky J, Keresztesová B, Bellová J, Kunová N, Čanigová N, Hanakova K, Bauer JA, Ondrovičová G, Lukáčová V, Siváková B, Zdrahal Z, Pevala V, Procházková K, Nosek J, Baráth P, Kutejova E, Tomaska L, (2021) "The yeast mitochondrial succinylome: Implications for regulation of mitochondrial nucleoids." <i>J Biol Chem</i> <b>297</b>(4):101155; PMID: [https://pubmed.ncbi.nlm.nih.gov/34480900 34480900]; doi: [https://dx.doi.org/10.1016/j.jbc.2021.101155 10.1016/j.jbc.2021.101155]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34480900 36]. |
#Mukherjee S, Perez KA, Dubois C, Nisbet RM, Li QX, Varghese S, Jin L, Birchall I, Streltsov VA, Vella LJ, McLean C, Barham KJ, Roberts BR, Masters CL, (2021) "Citrullination of Amyloid-β Peptides in Alzheimer's Disease." <i>ACS Chem Neurosci</i> <b>12</b>(19):3719–3732; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34519476 34519476]; doi: [https://dx.doi.org/10.1021/acschemneuro.1c00474 10.1021/acschemneuro.1c00474]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34519476 10]. | #Mukherjee S, Perez KA, Dubois C, Nisbet RM, Li QX, Varghese S, Jin L, Birchall I, Streltsov VA, Vella LJ, McLean C, Barham KJ, Roberts BR, Masters CL, (2021) "Citrullination of Amyloid-β Peptides in Alzheimer's Disease." <i>ACS Chem Neurosci</i> <b>12</b>(19):3719–3732; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34519476 34519476]; doi: [https://dx.doi.org/10.1021/acschemneuro.1c00474 10.1021/acschemneuro.1c00474]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34519476 10]. | ||
#Zhang X, Yang F, Li K, Cao W, Ru Y, Chen S, Li S, Liu X, Zhu Z, Zheng H, (2021) "The Insufficient Activation of RIG-I-Like Signaling Pathway Contributes to Highly Efficient Replication of Porcine Picornaviruses in IBRS-2 Cells." <i>Mol Cell Proteomics</i> <b>20</b>:100147; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34530158 34530158]; doi: [https://dx.doi.org/10.1016/j.mcpro.2021.100147 10.1016/j.mcpro.2021.100147]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34530158 4]. | #Zhang X, Yang F, Li K, Cao W, Ru Y, Chen S, Li S, Liu X, Zhu Z, Zheng H, (2021) "The Insufficient Activation of RIG-I-Like Signaling Pathway Contributes to Highly Efficient Replication of Porcine Picornaviruses in IBRS-2 Cells." <i>Mol Cell Proteomics</i> <b>20</b>:100147; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34530158 34530158]; doi: [https://dx.doi.org/10.1016/j.mcpro.2021.100147 10.1016/j.mcpro.2021.100147]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34530158 4]. | ||
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#Shlomovitz I, Erlich Z, Arad G, Edry-Botzer L, Zargarian S, Cohen H, Manko T, Ofir-Birin Y, Cooks T, Regev-Rudzki N, Gerlic M, (2021) "Proteomic analysis of necroptotic extracellular vesicles." <i>Cell Death Dis</i> <b>12</b>(11):1059; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34750357 34750357]; doi: [https://dx.doi.org/10.1038/s41419-021-04317-z 10.1038/s41419-021-04317-z]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34750357 12]. | #Shlomovitz I, Erlich Z, Arad G, Edry-Botzer L, Zargarian S, Cohen H, Manko T, Ofir-Birin Y, Cooks T, Regev-Rudzki N, Gerlic M, (2021) "Proteomic analysis of necroptotic extracellular vesicles." <i>Cell Death Dis</i> <b>12</b>(11):1059; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34750357 34750357]; doi: [https://dx.doi.org/10.1038/s41419-021-04317-z 10.1038/s41419-021-04317-z]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34750357 12]. | ||
#Froehlich JW, Wang HS, Logvinenko T, Kostel S, DiMartino S, van Bokhoven A, Moses MA, Lee RS, MAPP Research Network., (2021) "The Urinary Proteomic Profile Implicates Key Regulators for Urologic Chronic Pelvic Pain Syndrome (UCPPS): A MAPP Research Network Study." <i>Mol Cell Proteomics</i> <b>21</b>(1):100176; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34774759 34774759]; doi: [https://dx.doi.org/10.1016/j.mcpro.2021.100176 10.1016/j.mcpro.2021.100176]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34774759 52]. | #Froehlich JW, Wang HS, Logvinenko T, Kostel S, DiMartino S, van Bokhoven A, Moses MA, Lee RS, MAPP Research Network., (2021) "The Urinary Proteomic Profile Implicates Key Regulators for Urologic Chronic Pelvic Pain Syndrome (UCPPS): A MAPP Research Network Study." <i>Mol Cell Proteomics</i> <b>21</b>(1):100176; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34774759 34774759]; doi: [https://dx.doi.org/10.1016/j.mcpro.2021.100176 10.1016/j.mcpro.2021.100176]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34774759 52]. | ||
- | # () "" <i></i>; PMID: [ | + | #Capizzi M, Carpentier R, Denarier E, Adrait A, Kassem R, Mapelli M, Couté Y, Humbert S, (2021) "Developmental defects in Huntington's disease show that axonal growth and microtubule reorganization require NUMA1." <i>Neuron</i>; PMID: [https://pubmed.ncbi.nlm.nih.gov/34793694 34793694]; doi: [https://dx.doi.org/10.1016/j.neuron.2021.10.033 10.1016/j.neuron.2021.10.033]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34793694 10]. |
#Stirm M, Fonteyne LM, Shashikadze B, Lindner M, Chirivi M, Lange A, Kaufhold C, Mayer C, Medugorac I, Kessler B, Kurome M, Zakhartchenko V, Hinrichs A, Kemter E, Krause S, Wanke R, Arnold GJ, Wess G, Nagashima H, Hrabĕ de Angelis M, Flenkenthaler F, Kobelke LA, Bearzi C, Rizzi R, Bähr A, Reese S, Matiasek K, Walter MC, Kupatt C, Ziegler S, Bartenstein P, Fröhlich T, Klymiuk N, Blutke A, Wolf E, (2021) "A scalable, clinically severe pig model for Duchenne muscular dystrophy." <i>Dis Model Mech</i> <b>14</b>(12):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34796900 34796900]; doi: [https://dx.doi.org/10.1242/dmm.049285 10.1242/dmm.049285]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34796900 42]. | #Stirm M, Fonteyne LM, Shashikadze B, Lindner M, Chirivi M, Lange A, Kaufhold C, Mayer C, Medugorac I, Kessler B, Kurome M, Zakhartchenko V, Hinrichs A, Kemter E, Krause S, Wanke R, Arnold GJ, Wess G, Nagashima H, Hrabĕ de Angelis M, Flenkenthaler F, Kobelke LA, Bearzi C, Rizzi R, Bähr A, Reese S, Matiasek K, Walter MC, Kupatt C, Ziegler S, Bartenstein P, Fröhlich T, Klymiuk N, Blutke A, Wolf E, (2021) "A scalable, clinically severe pig model for Duchenne muscular dystrophy." <i>Dis Model Mech</i> <b>14</b>(12):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34796900 34796900]; doi: [https://dx.doi.org/10.1242/dmm.049285 10.1242/dmm.049285]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34796900 42]. | ||
#Morgenstern M, Peikert CD, Lübbert P, Suppanz I, Klemm C, Alka O, Steiert C, Naumenko N, Schendzielorz A, Melchionda L, Mühlhäuser WWD, Knapp B, Busch JD, Stiller SB, Dannenmaier S, Lindau C, Licheva M, Eickhorst C, Galbusera R, Zerbes RM, Ryan MT, Kraft C, Kozjak-Pavlovic V, Drepper F, Dennerlein S, Oeljeklaus S, Pfanner N, Wiedemann N, Warscheid B, (2021) "Quantitative high-confidence human mitochondrial proteome and its dynamics in cellular context." <i>Cell Metab</i> <b>33</b>(12):2464–2483.e18; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34800366 34800366]; doi: [https://dx.doi.org/10.1016/j.cmet.2021.11.001 10.1016/j.cmet.2021.11.001]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34800366 1024]. | #Morgenstern M, Peikert CD, Lübbert P, Suppanz I, Klemm C, Alka O, Steiert C, Naumenko N, Schendzielorz A, Melchionda L, Mühlhäuser WWD, Knapp B, Busch JD, Stiller SB, Dannenmaier S, Lindau C, Licheva M, Eickhorst C, Galbusera R, Zerbes RM, Ryan MT, Kraft C, Kozjak-Pavlovic V, Drepper F, Dennerlein S, Oeljeklaus S, Pfanner N, Wiedemann N, Warscheid B, (2021) "Quantitative high-confidence human mitochondrial proteome and its dynamics in cellular context." <i>Cell Metab</i> <b>33</b>(12):2464–2483.e18; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/34800366 34800366]; doi: [https://dx.doi.org/10.1016/j.cmet.2021.11.001 10.1016/j.cmet.2021.11.001]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34800366 1024]. |
GPMDB was originally constructed to serve as a reference work for all publicly available proteomics generated using tandem mass spectrometry. Public data is downloaded and reanalyzed using the current version of X! Tandem. The result files generated by the reanalysis and the relevant metadata are imported into the database and made available through the associated web site, ftp site and REST interfaces.
Contents |
The following public data repositories are checked daily for new suitable raw data for reanalysis:
Data made available from specific large projects, such as CPTAC or the Human Proteome Atlas, are also included when they are made available. Every effort is made so that reanalyzed results from all data sources are made available within 48 hours of their being released. In addition, data from lab web sites, ftp sites and direct contributions through the GPM sites made available to researchers are imported into GPMDB as part of a daily incremental update process.
GPMDB has been in operation since Jan. 1, 2004. Several large data source repositories have come into existence and ceased activity in the period since that time. All of the data from those repositories (e.g., TRANCHE, Peptidome) were reanalyzed and stored in GPMDB and they are still available even though the source repository sites are no longer active.
Simply because data is made available does not mean that it will be included in GPMDB. The data must be approved our quality control AI for its initial acceptance and it may be rejected subsequently because of either quality or originality concerns.
CAUTION: Many papers contain serious errors in their Methods sections. When using data from the literature, it is important to be skeptical of any experimental parameter (cell line, tissue type, modification reagents, quantitation methoods, etc.) that may impact on your use of the data. We have tried to correct any obvious errors, but there is no way to guarantee that we found them all. When attempting to analyze or reproduce results, keep in mind the likelyhood that even key parts of the experiment methods may have been recorded incorrectly in the associated manuscript, as methods are rarely reviewed properly in the current journal publication process.
The following is a list of data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list was current, as of Jan 2, 2022.