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==Data from publications== | ==Data from publications== | ||
- | The following is a list of data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list was current, as of | + | The following is a list of data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list was current, as of May 15, 2022. |
#Lipton MS, <i>et al.</i> (2002) "Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags." <i>Proc Natl Acad Sci U S A</i> <b>99</b>(17):11049–54; PMID: [https://pubmed.ncbi.nlm.nih.gov/12177431 12177431]; doi: [https://dx.doi.org/10.1073/pnas.172170199 10.1073/pnas.172170199]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/12177431 498]. | #Lipton MS, <i>et al.</i> (2002) "Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags." <i>Proc Natl Acad Sci U S A</i> <b>99</b>(17):11049–54; PMID: [https://pubmed.ncbi.nlm.nih.gov/12177431 12177431]; doi: [https://dx.doi.org/10.1073/pnas.172170199 10.1073/pnas.172170199]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/12177431 498]. | ||
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#Wei W, <i>et al.</i> (2016) "Deep Coverage Proteomics Identifies More Low-Abundance Missing Proteins in Human Testis Tissue with Q-Exactive HF Mass Spectrometer." <i>J Proteome Res</i> <b>15</b>(11):3988–3997; PMID: [https://pubmed.ncbi.nlm.nih.gov/27535590 27535590]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00390 10.1021/acs.jproteome.6b00390]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27535590 150]. | #Wei W, <i>et al.</i> (2016) "Deep Coverage Proteomics Identifies More Low-Abundance Missing Proteins in Human Testis Tissue with Q-Exactive HF Mass Spectrometer." <i>J Proteome Res</i> <b>15</b>(11):3988–3997; PMID: [https://pubmed.ncbi.nlm.nih.gov/27535590 27535590]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00390 10.1021/acs.jproteome.6b00390]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27535590 150]. | ||
#Dobó J, <i>et al.</i> (2016) "MASP-3 is the exclusive pro-factor D activator in resting blood: the lectin and the alternative complement pathways are fundamentally linked." <i>Sci Rep</i> <b>6</b>:31877; PMID: [https://pubmed.ncbi.nlm.nih.gov/27535802 27535802]; doi: [https://dx.doi.org/10.1038/srep31877 10.1038/srep31877]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27535802 6]. | #Dobó J, <i>et al.</i> (2016) "MASP-3 is the exclusive pro-factor D activator in resting blood: the lectin and the alternative complement pathways are fundamentally linked." <i>Sci Rep</i> <b>6</b>:31877; PMID: [https://pubmed.ncbi.nlm.nih.gov/27535802 27535802]; doi: [https://dx.doi.org/10.1038/srep31877 10.1038/srep31877]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27535802 6]. | ||
- | #Zhang P, <i>et al.</i> (2016) "The proteome of normal human retrobulbar optic nerve and sclera." <i>Proteomics</i> <b>16</b>(19):2592–2596; PMID: [https://pubmed.ncbi.nlm.nih.gov/27538499 27538499]; doi: [https://dx.doi.org/10.1002/pmic.201600229 10.1002/pmic.201600229]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27538499 | + | #Zhang P, <i>et al.</i> (2016) "The proteome of normal human retrobulbar optic nerve and sclera." <i>Proteomics</i> <b>16</b>(19):2592–2596; PMID: [https://pubmed.ncbi.nlm.nih.gov/27538499 27538499]; doi: [https://dx.doi.org/10.1002/pmic.201600229 10.1002/pmic.201600229]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27538499 125]. |
#Walley JW, <i>et al.</i> (2016) "Integration of omic networks in a developmental atlas of maize." <i>Science</i> <b>353</b>(6301):814–8; PMID: [https://pubmed.ncbi.nlm.nih.gov/27540173 27540173]; doi: [https://dx.doi.org/10.1126/science.aag1125 10.1126/science.aag1125]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27540173 10350]. | #Walley JW, <i>et al.</i> (2016) "Integration of omic networks in a developmental atlas of maize." <i>Science</i> <b>353</b>(6301):814–8; PMID: [https://pubmed.ncbi.nlm.nih.gov/27540173 27540173]; doi: [https://dx.doi.org/10.1126/science.aag1125 10.1126/science.aag1125]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27540173 10350]. | ||
#Xie Y, <i>et al.</i> (2016) "Quantitative profiling of spreading-coupled protein tyrosine phosphorylation in migratory cells." <i>Sci Rep</i> <b>6</b>:31811; PMID: [https://pubmed.ncbi.nlm.nih.gov/27554326 27554326]; doi: [https://dx.doi.org/10.1038/srep31811 10.1038/srep31811]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27554326 6]. | #Xie Y, <i>et al.</i> (2016) "Quantitative profiling of spreading-coupled protein tyrosine phosphorylation in migratory cells." <i>Sci Rep</i> <b>6</b>:31811; PMID: [https://pubmed.ncbi.nlm.nih.gov/27554326 27554326]; doi: [https://dx.doi.org/10.1038/srep31811 10.1038/srep31811]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27554326 6]. | ||
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#Diaz-Vera J, <i>et al.</i> (2017) "A proteomic approach to identify endosomal cargoes controlling cancer invasiveness." <i>J Cell Sci</i> <b>130</b>(4):697–711; PMID: [https://pubmed.ncbi.nlm.nih.gov/28062852 28062852]; doi: [https://dx.doi.org/10.1242/jcs.190835 10.1242/jcs.190835]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28062852 106]. | #Diaz-Vera J, <i>et al.</i> (2017) "A proteomic approach to identify endosomal cargoes controlling cancer invasiveness." <i>J Cell Sci</i> <b>130</b>(4):697–711; PMID: [https://pubmed.ncbi.nlm.nih.gov/28062852 28062852]; doi: [https://dx.doi.org/10.1242/jcs.190835 10.1242/jcs.190835]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28062852 106]. | ||
#Pietzner M, <i>et al.</i> (2017) "Plasma proteome and metabolome characterization of an experimental human thyrotoxicosis model." <i>BMC Med</i> <b>15</b>(1):6; PMID: [https://pubmed.ncbi.nlm.nih.gov/28065164 28065164]; doi: [https://dx.doi.org/10.1186/s12916-016-0770-8 10.1186/s12916-016-0770-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28065164 80]. | #Pietzner M, <i>et al.</i> (2017) "Plasma proteome and metabolome characterization of an experimental human thyrotoxicosis model." <i>BMC Med</i> <b>15</b>(1):6; PMID: [https://pubmed.ncbi.nlm.nih.gov/28065164 28065164]; doi: [https://dx.doi.org/10.1186/s12916-016-0770-8 10.1186/s12916-016-0770-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28065164 80]. | ||
- | #Kreutz D, <i>et al.</i> (2017) "Response Profiling Using Shotgun Proteomics Enables Global Metallodrug Mechanisms of Action To Be Established." <i>Chemistry</i> <b>23</b>(8):1881–1890; PMID: [https://pubmed.ncbi.nlm.nih.gov/28071820 28071820]; doi: [https://dx.doi.org/10.1002/chem.201604516 10.1002/chem.201604516]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28071820 | + | #Kreutz D, <i>et al.</i> (2017) "Response Profiling Using Shotgun Proteomics Enables Global Metallodrug Mechanisms of Action To Be Established." <i>Chemistry</i> <b>23</b>(8):1881–1890; PMID: [https://pubmed.ncbi.nlm.nih.gov/28071820 28071820]; doi: [https://dx.doi.org/10.1002/chem.201604516 10.1002/chem.201604516]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28071820 120]. |
#Xing F, <i>et al.</i> (2017) "The Anti-Warburg Effect Elicited by the cAMP-PGC1α Pathway Drives Differentiation of Glioblastoma Cells into Astrocytes." <i>Cell Rep</i> <b>18</b>(2):468–481; PMID: [https://pubmed.ncbi.nlm.nih.gov/28076790 28076790]; doi: [https://dx.doi.org/10.1016/j.celrep.2016.12.037 10.1016/j.celrep.2016.12.037]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28076790 60]. | #Xing F, <i>et al.</i> (2017) "The Anti-Warburg Effect Elicited by the cAMP-PGC1α Pathway Drives Differentiation of Glioblastoma Cells into Astrocytes." <i>Cell Rep</i> <b>18</b>(2):468–481; PMID: [https://pubmed.ncbi.nlm.nih.gov/28076790 28076790]; doi: [https://dx.doi.org/10.1016/j.celrep.2016.12.037 10.1016/j.celrep.2016.12.037]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28076790 60]. | ||
#Loroch S, <i>et al.</i> (2017) "Alterations of the platelet proteome in type I Glanzmann thrombasthenia caused by different homozygous delG frameshift mutations in ITGA2B." <i>Thromb Haemost</i> <b>117</b>(3):556–569; PMID: [https://pubmed.ncbi.nlm.nih.gov/28078347 28078347]; doi: [https://dx.doi.org/10.1160/TH16-07-0515 10.1160/TH16-07-0515]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28078347 20]. | #Loroch S, <i>et al.</i> (2017) "Alterations of the platelet proteome in type I Glanzmann thrombasthenia caused by different homozygous delG frameshift mutations in ITGA2B." <i>Thromb Haemost</i> <b>117</b>(3):556–569; PMID: [https://pubmed.ncbi.nlm.nih.gov/28078347 28078347]; doi: [https://dx.doi.org/10.1160/TH16-07-0515 10.1160/TH16-07-0515]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28078347 20]. | ||
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#Saravanan R, <i>et al.</i> (2017) "Proteolytic signatures define unique thrombin-derived peptides present in human wound fluid in vivo." <i>Sci Rep</i> <b>7</b>(1):13136; PMID: [https://pubmed.ncbi.nlm.nih.gov/29030565 29030565]; doi: [https://dx.doi.org/10.1038/s41598-017-13197-3 10.1038/s41598-017-13197-3]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29030565 43]. | #Saravanan R, <i>et al.</i> (2017) "Proteolytic signatures define unique thrombin-derived peptides present in human wound fluid in vivo." <i>Sci Rep</i> <b>7</b>(1):13136; PMID: [https://pubmed.ncbi.nlm.nih.gov/29030565 29030565]; doi: [https://dx.doi.org/10.1038/s41598-017-13197-3 10.1038/s41598-017-13197-3]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29030565 43]. | ||
#Grenga L, <i>et al.</i> (2017) "Analyzing the Complex Regulatory Landscape of Hfq - an Integrative, Multi-Omics Approach." <i>Front Microbiol</i> <b>8</b>:1784; PMID: [https://pubmed.ncbi.nlm.nih.gov/29033902 29033902]; doi: [https://dx.doi.org/10.3389/fmicb.2017.01784 10.3389/fmicb.2017.01784]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29033902 1]. | #Grenga L, <i>et al.</i> (2017) "Analyzing the Complex Regulatory Landscape of Hfq - an Integrative, Multi-Omics Approach." <i>Front Microbiol</i> <b>8</b>:1784; PMID: [https://pubmed.ncbi.nlm.nih.gov/29033902 29033902]; doi: [https://dx.doi.org/10.3389/fmicb.2017.01784 10.3389/fmicb.2017.01784]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29033902 1]. | ||
+ | #Solanki HS, <i>et al.</i> (2018) "Cigarette smoke induces mitochondrial metabolic reprogramming in lung cells." <i>Mitochondrion</i> <b>40</b>:58–70; PMID: [https://pubmed.ncbi.nlm.nih.gov/29042306 29042306]; doi: [https://dx.doi.org/10.1016/j.mito.2017.10.002 10.1016/j.mito.2017.10.002]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29042306 3]. | ||
#Kugeratski FG, <i>et al.</i> (2018) "Mitogen-Activated Protein Kinase Kinase 5 Regulates Proliferation and Biosynthetic Processes in Procyclic Forms of Trypanosoma brucei." <i>J Proteome Res</i> <b>17</b>(1):108–118; PMID: [https://pubmed.ncbi.nlm.nih.gov/29043805 29043805]; doi: [https://dx.doi.org/10.1021/acs.jproteome.7b00415 10.1021/acs.jproteome.7b00415]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29043805 15]. | #Kugeratski FG, <i>et al.</i> (2018) "Mitogen-Activated Protein Kinase Kinase 5 Regulates Proliferation and Biosynthetic Processes in Procyclic Forms of Trypanosoma brucei." <i>J Proteome Res</i> <b>17</b>(1):108–118; PMID: [https://pubmed.ncbi.nlm.nih.gov/29043805 29043805]; doi: [https://dx.doi.org/10.1021/acs.jproteome.7b00415 10.1021/acs.jproteome.7b00415]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29043805 15]. | ||
#Bartosova M, <i>et al.</i> (2018) "Complement Activation in Peritoneal Dialysis-Induced Arteriolopathy." <i>J Am Soc Nephrol</i> <b>29</b>(1):268–282; PMID: [https://pubmed.ncbi.nlm.nih.gov/29046343 29046343]; doi: [https://dx.doi.org/10.1681/ASN.2017040436 10.1681/ASN.2017040436]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29046343 2]. | #Bartosova M, <i>et al.</i> (2018) "Complement Activation in Peritoneal Dialysis-Induced Arteriolopathy." <i>J Am Soc Nephrol</i> <b>29</b>(1):268–282; PMID: [https://pubmed.ncbi.nlm.nih.gov/29046343 29046343]; doi: [https://dx.doi.org/10.1681/ASN.2017040436 10.1681/ASN.2017040436]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29046343 2]. | ||
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#Kelley RC, <i>et al.</i> (2018) "Advanced aging causes diaphragm functional abnormalities, global proteome remodeling, and loss of mitochondrial cysteine redox flexibility in mice." <i>Exp Gerontol</i> <b>103</b>:69–79; PMID: [https://pubmed.ncbi.nlm.nih.gov/29289553 29289553]; doi: [https://dx.doi.org/10.1016/j.exger.2017.12.017 10.1016/j.exger.2017.12.017]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29289553 24]. | #Kelley RC, <i>et al.</i> (2018) "Advanced aging causes diaphragm functional abnormalities, global proteome remodeling, and loss of mitochondrial cysteine redox flexibility in mice." <i>Exp Gerontol</i> <b>103</b>:69–79; PMID: [https://pubmed.ncbi.nlm.nih.gov/29289553 29289553]; doi: [https://dx.doi.org/10.1016/j.exger.2017.12.017 10.1016/j.exger.2017.12.017]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29289553 24]. | ||
#Behr M, <i>et al.</i> (2018) "Insights into the molecular regulation of monolignol-derived product biosynthesis in the growing hemp hypocotyl." <i>BMC Plant Biol</i> <b>18</b>(1):1; PMID: [https://pubmed.ncbi.nlm.nih.gov/29291729 29291729]; doi: [https://dx.doi.org/10.1186/s12870-017-1213-1 10.1186/s12870-017-1213-1]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29291729 20]. | #Behr M, <i>et al.</i> (2018) "Insights into the molecular regulation of monolignol-derived product biosynthesis in the growing hemp hypocotyl." <i>BMC Plant Biol</i> <b>18</b>(1):1; PMID: [https://pubmed.ncbi.nlm.nih.gov/29291729 29291729]; doi: [https://dx.doi.org/10.1186/s12870-017-1213-1 10.1186/s12870-017-1213-1]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29291729 20]. | ||
+ | #Bruschi M, <i>et al.</i> (2018) "Proteome of Bovine Mitochondria and Rod Outer Segment Disks: Commonalities and Differences." <i>J Proteome Res</i> <b>17</b>(2):918–925; PMID: [https://pubmed.ncbi.nlm.nih.gov/29299929 29299929]; doi: [https://dx.doi.org/10.1021/acs.jproteome.7b00741 10.1021/acs.jproteome.7b00741]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29299929 9]. | ||
#Ritz D, <i>et al.</i> (2018) "Membranal and Blood-Soluble HLA Class II Peptidome Analyses Using Data-Dependent and Independent Acquisition." <i>Proteomics</i> <b>18</b>(12):e1700246; PMID: [https://pubmed.ncbi.nlm.nih.gov/29314611 29314611]; doi: [https://dx.doi.org/10.1002/pmic.201700246 10.1002/pmic.201700246]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29314611 27]. | #Ritz D, <i>et al.</i> (2018) "Membranal and Blood-Soluble HLA Class II Peptidome Analyses Using Data-Dependent and Independent Acquisition." <i>Proteomics</i> <b>18</b>(12):e1700246; PMID: [https://pubmed.ncbi.nlm.nih.gov/29314611 29314611]; doi: [https://dx.doi.org/10.1002/pmic.201700246 10.1002/pmic.201700246]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29314611 27]. | ||
#Kooijman S, <i>et al.</i> (2018) "Novel identified aluminum hydroxide-induced pathways prove monocyte activation and pro-inflammatory preparedness." <i>J Proteomics</i> <b>175</b>:144–155; PMID: [https://pubmed.ncbi.nlm.nih.gov/29317357 29317357]; doi: [https://dx.doi.org/10.1016/j.jprot.2017.12.021 10.1016/j.jprot.2017.12.021]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29317357 55]. | #Kooijman S, <i>et al.</i> (2018) "Novel identified aluminum hydroxide-induced pathways prove monocyte activation and pro-inflammatory preparedness." <i>J Proteomics</i> <b>175</b>:144–155; PMID: [https://pubmed.ncbi.nlm.nih.gov/29317357 29317357]; doi: [https://dx.doi.org/10.1016/j.jprot.2017.12.021 10.1016/j.jprot.2017.12.021]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29317357 55]. | ||
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#Giovani PA, <i>et al.</i> (2019) "Membrane proteome characterization of periodontal ligament cell sets from deciduous and permanent teeth." <i>J Periodontol</i> <b>90</b>(7):775–787; PMID: [https://pubmed.ncbi.nlm.nih.gov/30499115 30499115]; doi: [https://dx.doi.org/10.1002/JPER.18-0217 10.1002/JPER.18-0217]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30499115 6]. | #Giovani PA, <i>et al.</i> (2019) "Membrane proteome characterization of periodontal ligament cell sets from deciduous and permanent teeth." <i>J Periodontol</i> <b>90</b>(7):775–787; PMID: [https://pubmed.ncbi.nlm.nih.gov/30499115 30499115]; doi: [https://dx.doi.org/10.1002/JPER.18-0217 10.1002/JPER.18-0217]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30499115 6]. | ||
#Gruhlke MCH, <i>et al.</i> (2019) "The human allicin-proteome: S-thioallylation of proteins by the garlic defence substance allicin and its biological effects." <i>Free Radic Biol Med</i> <b>131</b>:144–153; PMID: [https://pubmed.ncbi.nlm.nih.gov/30500420 30500420]; doi: [https://dx.doi.org/10.1016/j.freeradbiomed.2018.11.022 10.1016/j.freeradbiomed.2018.11.022]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30500420 24]. | #Gruhlke MCH, <i>et al.</i> (2019) "The human allicin-proteome: S-thioallylation of proteins by the garlic defence substance allicin and its biological effects." <i>Free Radic Biol Med</i> <b>131</b>:144–153; PMID: [https://pubmed.ncbi.nlm.nih.gov/30500420 30500420]; doi: [https://dx.doi.org/10.1016/j.freeradbiomed.2018.11.022 10.1016/j.freeradbiomed.2018.11.022]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30500420 24]. | ||
+ | #Xiong F, <i>et al.</i> (2019) "Quantitative proteomics reveals distinct composition of amyloid plaques in Alzheimer's disease." <i>Alzheimers Dement</i> <b>15</b>(3):429–440; PMID: [https://pubmed.ncbi.nlm.nih.gov/30502339 30502339]; doi: [https://dx.doi.org/10.1016/j.jalz.2018.10.006 10.1016/j.jalz.2018.10.006]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30502339 1]. | ||
#Wolf A, <i>et al.</i> (2018) "Olfactory cleft proteome does not reflect olfactory performance in patients with idiopathic and postinfectious olfactory disorder: A pilot study." <i>Sci Rep</i> <b>8</b>(1):17554; PMID: [https://pubmed.ncbi.nlm.nih.gov/30510230 30510230]; doi: [https://dx.doi.org/10.1038/s41598-018-35776-8 10.1038/s41598-018-35776-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30510230 21]. | #Wolf A, <i>et al.</i> (2018) "Olfactory cleft proteome does not reflect olfactory performance in patients with idiopathic and postinfectious olfactory disorder: A pilot study." <i>Sci Rep</i> <b>8</b>(1):17554; PMID: [https://pubmed.ncbi.nlm.nih.gov/30510230 30510230]; doi: [https://dx.doi.org/10.1038/s41598-018-35776-8 10.1038/s41598-018-35776-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30510230 21]. | ||
#Tascher G, <i>et al.</i> (2019) "Analysis of femurs from mice embarked on board BION-M1 biosatellite reveals a decrease in immune cell development, including B cells, after 1 wk of recovery on Earth." <i>FASEB J</i> <b>33</b>(3):3772–3783; PMID: [https://pubmed.ncbi.nlm.nih.gov/30521760 30521760]; doi: [https://dx.doi.org/10.1096/fj.201801463R 10.1096/fj.201801463R]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30521760 36]. | #Tascher G, <i>et al.</i> (2019) "Analysis of femurs from mice embarked on board BION-M1 biosatellite reveals a decrease in immune cell development, including B cells, after 1 wk of recovery on Earth." <i>FASEB J</i> <b>33</b>(3):3772–3783; PMID: [https://pubmed.ncbi.nlm.nih.gov/30521760 30521760]; doi: [https://dx.doi.org/10.1096/fj.201801463R 10.1096/fj.201801463R]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30521760 36]. | ||
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#Liu Z, <i>et al.</i> (2019) "Integrative Transcriptome and Proteome Analysis Identifies Major Metabolic Pathways Involved in Pepper Fruit Development." <i>J Proteome Res</i> <b>18</b>(3):982–994; PMID: [https://pubmed.ncbi.nlm.nih.gov/30650966 30650966]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00673 10.1021/acs.jproteome.8b00673]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30650966 24]. | #Liu Z, <i>et al.</i> (2019) "Integrative Transcriptome and Proteome Analysis Identifies Major Metabolic Pathways Involved in Pepper Fruit Development." <i>J Proteome Res</i> <b>18</b>(3):982–994; PMID: [https://pubmed.ncbi.nlm.nih.gov/30650966 30650966]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00673 10.1021/acs.jproteome.8b00673]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30650966 24]. | ||
#van Oorschot R, <i>et al.</i> (2019) "Molecular mechanisms of bleeding disorderassociated GFI1B<sup>Q287*</sup> mutation and its affected pathways in megakaryocytes and platelets." <i>Haematologica</i> <b>104</b>(7):1460–1472; PMID: [https://pubmed.ncbi.nlm.nih.gov/30655368 30655368]; doi: [https://dx.doi.org/10.3324/haematol.2018.194555 10.3324/haematol.2018.194555]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30655368 63]. | #van Oorschot R, <i>et al.</i> (2019) "Molecular mechanisms of bleeding disorderassociated GFI1B<sup>Q287*</sup> mutation and its affected pathways in megakaryocytes and platelets." <i>Haematologica</i> <b>104</b>(7):1460–1472; PMID: [https://pubmed.ncbi.nlm.nih.gov/30655368 30655368]; doi: [https://dx.doi.org/10.3324/haematol.2018.194555 10.3324/haematol.2018.194555]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30655368 63]. | ||
+ | #Kosmacz M, <i>et al.</i> (2019) "Protein and metabolite composition of Arabidopsis stress granules." <i>New Phytol</i> <b>222</b>(3):1420–1433; PMID: [https://pubmed.ncbi.nlm.nih.gov/30664249 30664249]; doi: [https://dx.doi.org/10.1111/nph.15690 10.1111/nph.15690]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30664249 20]. | ||
#Tsukada T, <i>et al.</i> (2019) "Identification of TGFβ-induced proteins in non-endocrine mouse pituitary cell line TtT/GF by SILAC-assisted quantitative mass spectrometry." <i>Cell Tissue Res</i> <b>376</b>(2):281–293; PMID: [https://pubmed.ncbi.nlm.nih.gov/30666536 30666536]; doi: [https://dx.doi.org/10.1007/s00441-018-02989-2 10.1007/s00441-018-02989-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30666536 11]. | #Tsukada T, <i>et al.</i> (2019) "Identification of TGFβ-induced proteins in non-endocrine mouse pituitary cell line TtT/GF by SILAC-assisted quantitative mass spectrometry." <i>Cell Tissue Res</i> <b>376</b>(2):281–293; PMID: [https://pubmed.ncbi.nlm.nih.gov/30666536 30666536]; doi: [https://dx.doi.org/10.1007/s00441-018-02989-2 10.1007/s00441-018-02989-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30666536 11]. | ||
#Gärtner SMK, <i>et al.</i> (2019) "Stage-specific testes proteomics of Drosophila melanogaster identifies essential proteins for male fertility." <i>Eur J Cell Biol</i> <b>98</b>(2-4):103–115; PMID: [https://pubmed.ncbi.nlm.nih.gov/30679029 30679029]; doi: [https://dx.doi.org/10.1016/j.ejcb.2019.01.001 10.1016/j.ejcb.2019.01.001]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30679029 180]. | #Gärtner SMK, <i>et al.</i> (2019) "Stage-specific testes proteomics of Drosophila melanogaster identifies essential proteins for male fertility." <i>Eur J Cell Biol</i> <b>98</b>(2-4):103–115; PMID: [https://pubmed.ncbi.nlm.nih.gov/30679029 30679029]; doi: [https://dx.doi.org/10.1016/j.ejcb.2019.01.001 10.1016/j.ejcb.2019.01.001]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30679029 180]. | ||
#Hurcombe JA, <i>et al.</i> (2019) "Podocyte GSK3 is an evolutionarily conserved critical regulator of kidney function." <i>Nat Commun</i> <b>10</b>(1):403; PMID: [https://pubmed.ncbi.nlm.nih.gov/30679422 30679422]; doi: [https://dx.doi.org/10.1038/s41467-018-08235-1 10.1038/s41467-018-08235-1]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30679422 1]. | #Hurcombe JA, <i>et al.</i> (2019) "Podocyte GSK3 is an evolutionarily conserved critical regulator of kidney function." <i>Nat Commun</i> <b>10</b>(1):403; PMID: [https://pubmed.ncbi.nlm.nih.gov/30679422 30679422]; doi: [https://dx.doi.org/10.1038/s41467-018-08235-1 10.1038/s41467-018-08235-1]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30679422 1]. | ||
#Fornecker LM, <i>et al.</i> (2019) "Multi-omics dataset to decipher the complexity of drug resistance in diffuse large B-cell lymphoma." <i>Sci Rep</i> <b>9</b>(1):895; PMID: [https://pubmed.ncbi.nlm.nih.gov/30696890 30696890]; doi: [https://dx.doi.org/10.1038/s41598-018-37273-4 10.1038/s41598-018-37273-4]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30696890 20]. | #Fornecker LM, <i>et al.</i> (2019) "Multi-omics dataset to decipher the complexity of drug resistance in diffuse large B-cell lymphoma." <i>Sci Rep</i> <b>9</b>(1):895; PMID: [https://pubmed.ncbi.nlm.nih.gov/30696890 30696890]; doi: [https://dx.doi.org/10.1038/s41598-018-37273-4 10.1038/s41598-018-37273-4]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30696890 20]. | ||
+ | #Huang S, <i>et al.</i> (2019) "Comprehensive and combined omics analysis reveals factors of ischemia-reperfusion injury in liver transplantation." <i>Epigenomics</i> <b>11</b>(5):527–542; PMID: [https://pubmed.ncbi.nlm.nih.gov/30700158 30700158]; doi: [https://dx.doi.org/10.2217/epi-2018-0189 10.2217/epi-2018-0189]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30700158 3]. | ||
#Dayon L, <i>et al.</i> (2019) "Proteomes of Paired Human Cerebrospinal Fluid and Plasma: Relation to Blood-Brain Barrier Permeability in Older Adults." <i>J Proteome Res</i> <b>18</b>(3):1162–1174; PMID: [https://pubmed.ncbi.nlm.nih.gov/30702894 30702894]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00809 10.1021/acs.jproteome.8b00809]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30702894 128]. | #Dayon L, <i>et al.</i> (2019) "Proteomes of Paired Human Cerebrospinal Fluid and Plasma: Relation to Blood-Brain Barrier Permeability in Older Adults." <i>J Proteome Res</i> <b>18</b>(3):1162–1174; PMID: [https://pubmed.ncbi.nlm.nih.gov/30702894 30702894]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00809 10.1021/acs.jproteome.8b00809]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30702894 128]. | ||
#McKetney J, <i>et al.</i> (2019) "Proteomic Atlas of the Human Brain in Alzheimer's Disease." <i>J Proteome Res</i> <b>18</b>(3):1380–1391; PMID: [https://pubmed.ncbi.nlm.nih.gov/30735395 30735395]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00004 10.1021/acs.jproteome.9b00004]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30735395 22]. | #McKetney J, <i>et al.</i> (2019) "Proteomic Atlas of the Human Brain in Alzheimer's Disease." <i>J Proteome Res</i> <b>18</b>(3):1380–1391; PMID: [https://pubmed.ncbi.nlm.nih.gov/30735395 30735395]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00004 10.1021/acs.jproteome.9b00004]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30735395 22]. | ||
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#Cunningham DL, <i>et al.</i> (2020) "Differential responses to kinase inhibition in FGFR2-addicted triple negative breast cancer cells: a quantitative phosphoproteomics study." <i>Sci Rep</i> <b>10</b>(1):7950; PMID: [https://pubmed.ncbi.nlm.nih.gov/32409632 32409632]; doi: [https://dx.doi.org/10.1038/s41598-020-64534-y 10.1038/s41598-020-64534-y]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32409632 377]. | #Cunningham DL, <i>et al.</i> (2020) "Differential responses to kinase inhibition in FGFR2-addicted triple negative breast cancer cells: a quantitative phosphoproteomics study." <i>Sci Rep</i> <b>10</b>(1):7950; PMID: [https://pubmed.ncbi.nlm.nih.gov/32409632 32409632]; doi: [https://dx.doi.org/10.1038/s41598-020-64534-y 10.1038/s41598-020-64534-y]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32409632 377]. | ||
#van Geelen L, <i>et al.</i> (2020) "Natural brominated phenoxyphenols kill persistent and biofilm-incorporated cells of MRSA and other pathogenic bacteria." <i>Appl Microbiol Biotechnol</i> <b>104</b>(13):5985–5998; PMID: [https://pubmed.ncbi.nlm.nih.gov/32418125 32418125]; doi: [https://dx.doi.org/10.1007/s00253-020-10654-4 10.1007/s00253-020-10654-4]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32418125 12]. | #van Geelen L, <i>et al.</i> (2020) "Natural brominated phenoxyphenols kill persistent and biofilm-incorporated cells of MRSA and other pathogenic bacteria." <i>Appl Microbiol Biotechnol</i> <b>104</b>(13):5985–5998; PMID: [https://pubmed.ncbi.nlm.nih.gov/32418125 32418125]; doi: [https://dx.doi.org/10.1007/s00253-020-10654-4 10.1007/s00253-020-10654-4]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32418125 12]. | ||
- | #de la Fuente AG, <i>et al.</i> (2020) "Changes in the Oligodendrocyte Progenitor Cell Proteome with Ageing." <i>Mol Cell Proteomics</i> <b>19</b>(8):1281–1302; PMID: [https://pubmed.ncbi.nlm.nih.gov/32434922 32434922]; doi: [https://dx.doi.org/10.1074/mcp.RA120.002102 10.1074/mcp.RA120.002102]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32434922 | + | #Maity S, <i>et al.</i> (2020) "Quantitative alterations in bovine milk proteome from healthy, subclinical and clinical mastitis during S. aureus infection." <i>J Proteomics</i> <b>223</b>:103815; PMID: [https://pubmed.ncbi.nlm.nih.gov/32423885 32423885]; doi: [https://dx.doi.org/10.1016/j.jprot.2020.103815 10.1016/j.jprot.2020.103815]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32423885 12]. |
+ | #de la Fuente AG, <i>et al.</i> (2020) "Changes in the Oligodendrocyte Progenitor Cell Proteome with Ageing." <i>Mol Cell Proteomics</i> <b>19</b>(8):1281–1302; PMID: [https://pubmed.ncbi.nlm.nih.gov/32434922 32434922]; doi: [https://dx.doi.org/10.1074/mcp.RA120.002102 10.1074/mcp.RA120.002102]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32434922 8]. | ||
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#Van JAD, <i>et al.</i> (2020) "Urinary proteomics links keratan sulfate degradation and lysosomal enzymes to early type 1 diabetes." <i>PLoS One</i> <b>15</b>(5):e0233639; PMID: [https://pubmed.ncbi.nlm.nih.gov/32453760 32453760]; doi: [https://dx.doi.org/10.1371/journal.pone.0233639 10.1371/journal.pone.0233639]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32453760 90]. | #Van JAD, <i>et al.</i> (2020) "Urinary proteomics links keratan sulfate degradation and lysosomal enzymes to early type 1 diabetes." <i>PLoS One</i> <b>15</b>(5):e0233639; PMID: [https://pubmed.ncbi.nlm.nih.gov/32453760 32453760]; doi: [https://dx.doi.org/10.1371/journal.pone.0233639 10.1371/journal.pone.0233639]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32453760 90]. | ||
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#Voß H, <i>et al.</i> (2020) "Differential regulation of extracellular matrix proteins in three recurrent liver metastases of a single patient with colorectal cancer." <i>Clin Exp Metastasis</i> <b>37</b>(6):649–656; PMID: [https://pubmed.ncbi.nlm.nih.gov/33099724 33099724]; doi: [https://dx.doi.org/10.1007/s10585-020-10058-8 10.1007/s10585-020-10058-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33099724 12]. | #Voß H, <i>et al.</i> (2020) "Differential regulation of extracellular matrix proteins in three recurrent liver metastases of a single patient with colorectal cancer." <i>Clin Exp Metastasis</i> <b>37</b>(6):649–656; PMID: [https://pubmed.ncbi.nlm.nih.gov/33099724 33099724]; doi: [https://dx.doi.org/10.1007/s10585-020-10058-8 10.1007/s10585-020-10058-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33099724 12]. | ||
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#Erber L, <i>et al.</i> (2022) "Quantitative Proteome and Transcriptome Dynamics Analysis Reveals Iron Deficiency Response Networks and Signature in Neuronal Cells." <i>Molecules</i> <b>27</b>(2):; PMID: [https://pubmed.ncbi.nlm.nih.gov/35056799 35056799]; doi: [https://dx.doi.org/10.3390/molecules27020484 10.3390/molecules27020484]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/35056799 24]. | #Erber L, <i>et al.</i> (2022) "Quantitative Proteome and Transcriptome Dynamics Analysis Reveals Iron Deficiency Response Networks and Signature in Neuronal Cells." <i>Molecules</i> <b>27</b>(2):; PMID: [https://pubmed.ncbi.nlm.nih.gov/35056799 35056799]; doi: [https://dx.doi.org/10.3390/molecules27020484 10.3390/molecules27020484]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/35056799 24]. | ||
#Ali N, <i>et al.</i> (2022) "Proteomics profiling of human synovial fluid suggests increased protein interplay in early-osteoarthritis (OA) that is lost in late-stage OA." <i>Mol Cell Proteomics</i> <b></b>:100200; PMID: [https://pubmed.ncbi.nlm.nih.gov/35074580 35074580]; doi: [https://dx.doi.org/10.1016/j.mcpro.2022.100200 10.1016/j.mcpro.2022.100200]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/35074580 61]. | #Ali N, <i>et al.</i> (2022) "Proteomics profiling of human synovial fluid suggests increased protein interplay in early-osteoarthritis (OA) that is lost in late-stage OA." <i>Mol Cell Proteomics</i> <b></b>:100200; PMID: [https://pubmed.ncbi.nlm.nih.gov/35074580 35074580]; doi: [https://dx.doi.org/10.1016/j.mcpro.2022.100200 10.1016/j.mcpro.2022.100200]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/35074580 61]. | ||
+ | #Garcia-Marques F, <i>et al.</i> (2022) "Protein signatures to distinguish aggressive from indolent prostate cancer." <i>Prostate</i> <b>82</b>(5):605–616; PMID: [https://pubmed.ncbi.nlm.nih.gov/35098564 35098564]; doi: [https://dx.doi.org/10.1002/pros.24307 10.1002/pros.24307]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/35098564 132]. | ||
#Yin H, <i>et al.</i> (2022) "A20 and ABIN-1 cooperate in balancing CBM complex-triggered NF-κB signaling in activated T cells." <i>Cell Mol Life Sci</i> <b>79</b>(2):112; PMID: [https://pubmed.ncbi.nlm.nih.gov/35099607 35099607]; doi: [https://dx.doi.org/10.1007/s00018-022-04154-z 10.1007/s00018-022-04154-z]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/35099607 9]. | #Yin H, <i>et al.</i> (2022) "A20 and ABIN-1 cooperate in balancing CBM complex-triggered NF-κB signaling in activated T cells." <i>Cell Mol Life Sci</i> <b>79</b>(2):112; PMID: [https://pubmed.ncbi.nlm.nih.gov/35099607 35099607]; doi: [https://dx.doi.org/10.1007/s00018-022-04154-z 10.1007/s00018-022-04154-z]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/35099607 9]. | ||
+ | #Dekker PM, <i>et al.</i> (2022) "Exploring Human Milk Dynamics: Interindividual Variation in Milk Proteome, Peptidome, and Metabolome." <i>J Proteome Res</i> <b>21</b>(4):1002–1016; PMID: [https://pubmed.ncbi.nlm.nih.gov/35104145 35104145]; doi: [https://dx.doi.org/10.1021/acs.jproteome.1c00879 10.1021/acs.jproteome.1c00879]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/35104145 30]. | ||
#Krishnan RK, <i>et al.</i> (2021) "Revisiting the Role of <i>ß</i>-Tubulin in <i>Drosophila</i> Development: <i>β-tubulin60D</i> is not an Essential Gene, and its Novel <i>Pin</i> <sup><i>1</i></sup> Allele has a Tissue-Specific Dominant-Negative Impact." <i>Front Cell Dev Biol</i> <b>9</b>:787976; PMID: [https://pubmed.ncbi.nlm.nih.gov/35111755 35111755]; doi: [https://dx.doi.org/10.3389/fcell.2021.787976 10.3389/fcell.2021.787976]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/35111755 6]. | #Krishnan RK, <i>et al.</i> (2021) "Revisiting the Role of <i>ß</i>-Tubulin in <i>Drosophila</i> Development: <i>β-tubulin60D</i> is not an Essential Gene, and its Novel <i>Pin</i> <sup><i>1</i></sup> Allele has a Tissue-Specific Dominant-Negative Impact." <i>Front Cell Dev Biol</i> <b>9</b>:787976; PMID: [https://pubmed.ncbi.nlm.nih.gov/35111755 35111755]; doi: [https://dx.doi.org/10.3389/fcell.2021.787976 10.3389/fcell.2021.787976]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/35111755 6]. | ||
#Correll VL, <i>et al.</i> (2022) "Optimization of small extracellular vesicle isolation from expressed prostatic secretions in urine for in-depth proteomic analysis." <i>J Extracell Vesicles</i> <b>11</b>(2):e12184; PMID: [https://pubmed.ncbi.nlm.nih.gov/35119778 35119778]; doi: [https://dx.doi.org/10.1002/jev2.12184 10.1002/jev2.12184]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/35119778 9]. | #Correll VL, <i>et al.</i> (2022) "Optimization of small extracellular vesicle isolation from expressed prostatic secretions in urine for in-depth proteomic analysis." <i>J Extracell Vesicles</i> <b>11</b>(2):e12184; PMID: [https://pubmed.ncbi.nlm.nih.gov/35119778 35119778]; doi: [https://dx.doi.org/10.1002/jev2.12184 10.1002/jev2.12184]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/35119778 9]. | ||
- | #Wang C, <i>et al.</i> (2022) "Stat4 rs7574865 polymorphism promotes the occurrence and progression of hepatocellular carcinoma via the Stat4/CYP2E1/FGL2 pathway." <i>Cell Death Dis</i> <b>13</b>(2):130; PMID: [https://pubmed.ncbi.nlm.nih.gov/35136014 35136014]; doi: [https://dx.doi.org/10.1038/s41419-022-04584-4 10.1038/s41419-022-04584-4]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/35136014 | + | #Wang C, <i>et al.</i> (2022) "Stat4 rs7574865 polymorphism promotes the occurrence and progression of hepatocellular carcinoma via the Stat4/CYP2E1/FGL2 pathway." <i>Cell Death Dis</i> <b>13</b>(2):130; PMID: [https://pubmed.ncbi.nlm.nih.gov/35136014 35136014]; doi: [https://dx.doi.org/10.1038/s41419-022-04584-4 10.1038/s41419-022-04584-4]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/35136014 93]. |
#Rezaei-Gazik M, <i>et al.</i> (2022) "Direct visualization of pre-protamine 2 detects protamine assembly failures and predicts ICSI success." <i>Mol Hum Reprod</i>; PMID: [https://pubmed.ncbi.nlm.nih.gov/35150275 35150275]; doi: [https://dx.doi.org/10.1093/molehr/gaac004 10.1093/molehr/gaac004]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/35150275 24]. | #Rezaei-Gazik M, <i>et al.</i> (2022) "Direct visualization of pre-protamine 2 detects protamine assembly failures and predicts ICSI success." <i>Mol Hum Reprod</i>; PMID: [https://pubmed.ncbi.nlm.nih.gov/35150275 35150275]; doi: [https://dx.doi.org/10.1093/molehr/gaac004 10.1093/molehr/gaac004]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/35150275 24]. | ||
+ | #Aiello G, <i>et al.</i> (2022) "Oxidative Stress Modulation by Carnosine in Scaffold Free Human Dermis Spheroids Model: A Proteomic Study." <i>Int J Mol Sci</i> <b>23</b>(3):; PMID: [https://pubmed.ncbi.nlm.nih.gov/35163388 35163388]; doi: [https://dx.doi.org/10.3390/ijms23031468 10.3390/ijms23031468]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/35163388 26]. | ||
+ | #Thim-Uam A, <i>et al.</i> (2022) "Enhanced Bacteremia in Dextran Sulfate-Induced Colitis in Splenectomy Mice Correlates with Gut Dysbiosis and LPS Tolerance." <i>Int J Mol Sci</i> <b>23</b>(3):; PMID: [https://pubmed.ncbi.nlm.nih.gov/35163596 35163596]; doi: [https://dx.doi.org/10.3390/ijms23031676 10.3390/ijms23031676]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/35163596 3]. | ||
+ | #Trautmann S, <i>et al.</i> (2022) "Is the proteomic composition of the salivary pellicle dependent on the substrate material?" <i>Proteomics Clin Appl</i> <b></b>:e2100109; PMID: [https://pubmed.ncbi.nlm.nih.gov/35195368 35195368]; doi: [https://dx.doi.org/10.1002/prca.202100109 10.1002/prca.202100109]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/35195368 24]. | ||
+ | #Sethi MK, <i>et al.</i> (2022) "In-Depth Matrisome and Glycoproteomic Analysis of Human Brain Glioblastoma Versus Control Tissue." <i>Mol Cell Proteomics</i> <b>21</b>(4):100216; PMID: [https://pubmed.ncbi.nlm.nih.gov/35202840 35202840]; doi: [https://dx.doi.org/10.1016/j.mcpro.2022.100216 10.1016/j.mcpro.2022.100216]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/35202840 42]. | ||
+ | #Murugesan G, <i>et al.</i> (2022) "Quantitative Proteomics of Polarised Macrophages Derived from Induced Pluripotent Stem Cells." <i>Biomedicines</i> <b>10</b>(2):; PMID: [https://pubmed.ncbi.nlm.nih.gov/35203449 35203449]; doi: [https://dx.doi.org/10.3390/biomedicines10020239 10.3390/biomedicines10020239]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/35203449 19]. | ||
+ | #Pazzaglia S, <i>et al.</i> (2022) "Micro-RNA and Proteomic Profiles of Plasma-Derived Exosomes from Irradiated Mice Reveal Molecular Changes Preventing Apoptosis in Neonatal Cerebellum." <i>Int J Mol Sci</i> <b>23</b>(4):; PMID: [https://pubmed.ncbi.nlm.nih.gov/35216284 35216284]; doi: [https://dx.doi.org/10.3390/ijms23042169 10.3390/ijms23042169]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/35216284 9]. | ||
+ | #Jones G, <i>et al.</i> (2022) "Comparison of Different Mass Spectrometry Workflows for the Proteomic Analysis of Tear Fluid." <i>Int J Mol Sci</i> <b>23</b>(4):; PMID: [https://pubmed.ncbi.nlm.nih.gov/35216421 35216421]; doi: [https://dx.doi.org/10.3390/ijms23042307 10.3390/ijms23042307]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/35216421 44]. | ||
+ | #COvid-19 Multi-omics Blood ATlas (COMBAT) Consortium. Electronic address: julian.knight@well.ox.ac.uk., <i>et al.</i> (2022) "A blood atlas of COVID-19 defines hallmarks of disease severity and specificity." <i>Cell</i> <b>185</b>(5):916–938.e58; PMID: [https://pubmed.ncbi.nlm.nih.gov/35216673 35216673]; doi: [https://dx.doi.org/10.1016/j.cell.2022.01.012 10.1016/j.cell.2022.01.012]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/35216673 559]. | ||
+ | #Buenafe AC, <i>et al.</i> (2022) "Proteomic analysis distinguishes extracellular vesicles produced by cancerous versus healthy pancreatic organoids." <i>Sci Rep</i> <b>12</b>(1):3556; PMID: [https://pubmed.ncbi.nlm.nih.gov/35241737 35241737]; doi: [https://dx.doi.org/10.1038/s41598-022-07451-6 10.1038/s41598-022-07451-6]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/35241737 8]. | ||
+ | #McCullough EL, <i>et al.</i> (2022) "The life history of <i>Drosophila</i> sperm involves molecular continuity between male and female reproductive tracts." <i>Proc Natl Acad Sci U S A</i> <b>119</b>(11):e2119899119; PMID: [https://pubmed.ncbi.nlm.nih.gov/35254899 35254899]; doi: [https://dx.doi.org/10.1073/pnas.2119899119 10.1073/pnas.2119899119]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/35254899 95]. | ||
+ | #Krumm J, <i>et al.</i> (2022) "High temporal resolution proteome and phosphoproteome profiling of stem cell-derived hepatocyte development." <i>Cell Rep</i> <b>38</b>(13):110604; PMID: [https://pubmed.ncbi.nlm.nih.gov/35354033 35354033]; doi: [https://dx.doi.org/10.1016/j.celrep.2022.110604 10.1016/j.celrep.2022.110604]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/35354033 490]. | ||
+ | #Croon M, <i>et al.</i> (2022) "FGF21 modulates mitochondrial stress response in cardiomyocytes only under mild mitochondrial dysfunction." <i>Sci Adv</i> <b>8</b>(14):eabn7105; PMID: [https://pubmed.ncbi.nlm.nih.gov/35385313 35385313]; doi: [https://dx.doi.org/10.1126/sciadv.abn7105 10.1126/sciadv.abn7105]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/35385313 71]. | ||
+ | #Ubaida-Mohien C, <i>et al.</i> (2022) "Unbiased proteomics, histochemistry, and mitochondrial DNA copy number reveal better mitochondrial health in muscle of high functioning octogenarians." <i>Elife</i>; PMID: [https://pubmed.ncbi.nlm.nih.gov/35404238 35404238]; doi: [https://dx.doi.org/10.7554/eLife.74335 10.7554/eLife.74335]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/35404238 98]. | ||
+ | #Fernando M, <i>et al.</i> (2022) "Differentiation of brain and retinal organoids from confluent cultures of pluripotent stem cells connected by nerve-like axonal projections of optic origin." <i>Stem Cell Reports</i>; PMID: [https://pubmed.ncbi.nlm.nih.gov/35523177 35523177]; doi: [https://dx.doi.org/10.1016/j.stemcr.2022.04.003 10.1016/j.stemcr.2022.04.003]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/35523177 117]. |
GPMDB was originally constructed to serve as a reference work for all publicly available proteomics generated using tandem mass spectrometry. Public data is downloaded and reanalyzed using the current version of X! Tandem. The result files generated by the reanalysis and the relevant metadata are imported into the database and made available through the associated web site, ftp site and REST interfaces.
Contents |
The following public data repositories are checked daily for new suitable raw data for reanalysis:
Data made available from specific large projects, such as CPTAC or the Human Proteome Atlas, are also included when they are made available. Every effort is made so that reanalyzed results from all data sources are made available within 48 hours of their being released. In addition, data from lab web sites, ftp sites and direct contributions through the GPM sites made available to researchers are imported into GPMDB as part of a daily incremental update process.
GPMDB has been in operation since Jan. 1, 2004. Several large data source repositories have come into existence and ceased activity in the period since that time. All of the data from those repositories (e.g., TRANCHE, Peptidome) were reanalyzed and stored in GPMDB and they are still available even though the source repository sites are no longer active.
Simply because data is made available does not mean that it will be included in GPMDB. The data must be approved our quality control AI for its initial acceptance and it may be rejected subsequently because of either quality or originality concerns.
CAUTION:Many datasets/papers contain serious errors in their metadata/methods sections. When using data from repositories, it is important to be skeptical of any experimental parameter (cell line, tissue type, modification reagents, quantitation methods, etc.) that may impact on your use of the data. We have corrected for as many of these errors as we could detect, but there is no way to be sure that we found them all. When attempting to analyze or reproduce results, keep in mind the likelihood that key parts of the experimental methods may have been recorded incorrectly in the associated metadata or manuscript.
The following is a list of data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list was current, as of May 15, 2022.