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Simply because data is made available does not mean that it will be included in GPMDB. The data must be approved our quality control AI for its initial acceptance and it may be rejected subsequently because of either quality or originality concerns. | Simply because data is made available does not mean that it will be included in GPMDB. The data must be approved our quality control AI for its initial acceptance and it may be rejected subsequently because of either quality or originality concerns. | ||
- | <b>CAUTION</b>: Many papers contain serious errors in their | + | <b>CAUTION</b>:Many datasets/papers contain serious errors in their metadata/methods sections. When using data from repositories, it is important to be skeptical of any experimental parameter (cell line, tissue type, modification reagents, quantitation methods, etc.) that may impact on your use of the data. We have corrected for as many of these errors as we could detect, but there is no way to be sure that we found them all. When attempting to analyze or reproduce results, keep in mind the likelihood that key parts of the experimental methods may have been recorded incorrectly in the associated metadata or manuscript. |
==Data from publications== | ==Data from publications== | ||
- | The following is a list of data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list was current, as of | + | The following is a list of data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list was current, as of January 1, 2024. |
#Lipton MS, Pasa-Tolic' L, Anderson GA, Anderson DJ, Auberry DL, Battista JR, Daly MJ, Fredrickson J, Hixson KK, Kostandarithes H, Masselon C, Markillie LM, Moore RJ, Romine MF, Shen Y, Stritmatter E, Tolic' N, Udseth HR, Venkateswaran A, Wong KK, Zhao R, Smith RD, (2002) "Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags." <i>Proc Natl Acad Sci U S A</i> <b>99</b>(17):11049–54; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/12177431 12177431]; doi: [https://dx.doi.org/10.1073/pnas.172170199 10.1073/pnas.172170199]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/12177431 498]. | #Lipton MS, Pasa-Tolic' L, Anderson GA, Anderson DJ, Auberry DL, Battista JR, Daly MJ, Fredrickson J, Hixson KK, Kostandarithes H, Masselon C, Markillie LM, Moore RJ, Romine MF, Shen Y, Stritmatter E, Tolic' N, Udseth HR, Venkateswaran A, Wong KK, Zhao R, Smith RD, (2002) "Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags." <i>Proc Natl Acad Sci U S A</i> <b>99</b>(17):11049–54; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/12177431 12177431]; doi: [https://dx.doi.org/10.1073/pnas.172170199 10.1073/pnas.172170199]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/12177431 498]. | ||
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#Ito J, Batth TS, Petzold CJ, Redding-Johanson AM, Mukhopadhyay A, Verboom R, Meyer EH, Millar AH, Heazlewood JL, (2011) "Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism." <i>J Proteome Res</i> <b>10</b>(4):1571–82; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21166475 21166475]; doi: [https://dx.doi.org/10.1021/pr1009433 10.1021/pr1009433]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21166475 3]. | #Ito J, Batth TS, Petzold CJ, Redding-Johanson AM, Mukhopadhyay A, Verboom R, Meyer EH, Millar AH, Heazlewood JL, (2011) "Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism." <i>J Proteome Res</i> <b>10</b>(4):1571–82; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21166475 21166475]; doi: [https://dx.doi.org/10.1021/pr1009433 10.1021/pr1009433]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21166475 3]. | ||
#Lee JE, Sweredoski MJ, Graham RL, Kolawa NJ, Smith GT, Hess S, Deshaies RJ, (2011) "The steady-state repertoire of human SCF ubiquitin ligase complexes does not require ongoing Nedd8 conjugation." <i>Mol Cell Proteomics</i> <b>10</b>(5):M110.006460; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21169563 21169563]; doi: [https://dx.doi.org/10.1074/mcp.M110.006460 10.1074/mcp.M110.006460]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21169563 41]. | #Lee JE, Sweredoski MJ, Graham RL, Kolawa NJ, Smith GT, Hess S, Deshaies RJ, (2011) "The steady-state repertoire of human SCF ubiquitin ligase complexes does not require ongoing Nedd8 conjugation." <i>Mol Cell Proteomics</i> <b>10</b>(5):M110.006460; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21169563 21169563]; doi: [https://dx.doi.org/10.1074/mcp.M110.006460 10.1074/mcp.M110.006460]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21169563 41]. | ||
- | #Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villén J, Haas W, Sowa ME, Gygi SP, (2010) "A tissue-specific atlas of mouse protein phosphorylation and expression." <i>Cell</i> <b>143</b>(7):1174–89; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21183079 21183079]; doi: [https://dx.doi.org/10.1016/j.cell.2010.12.001 10.1016/j.cell.2010.12.001]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21183079 | + | #Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villén J, Haas W, Sowa ME, Gygi SP, (2010) "A tissue-specific atlas of mouse protein phosphorylation and expression." <i>Cell</i> <b>143</b>(7):1174–89; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21183079 21183079]; doi: [https://dx.doi.org/10.1016/j.cell.2010.12.001 10.1016/j.cell.2010.12.001]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21183079 313]. |
#Brockmeyer C, Paster W, Pepper D, Tan CP, Trudgian DC, McGowan S, Fu G, Gascoigne NR, Acuto O, Salek M, (2011) "T cell receptor (TCR)-induced tyrosine phosphorylation dynamics identifies THEMIS as a new TCR signalosome component." <i>J Biol Chem</i> <b>286</b>(9):7535–47; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21189249 21189249]; doi: [https://dx.doi.org/10.1074/jbc.M110.201236 10.1074/jbc.M110.201236]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21189249 4]. | #Brockmeyer C, Paster W, Pepper D, Tan CP, Trudgian DC, McGowan S, Fu G, Gascoigne NR, Acuto O, Salek M, (2011) "T cell receptor (TCR)-induced tyrosine phosphorylation dynamics identifies THEMIS as a new TCR signalosome component." <i>J Biol Chem</i> <b>286</b>(9):7535–47; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21189249 21189249]; doi: [https://dx.doi.org/10.1074/jbc.M110.201236 10.1074/jbc.M110.201236]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21189249 4]. | ||
#Manes NP, Dong L, Zhou W, Du X, Reghu N, Kool AC, Choi D, Bailey CL, Petricoin EF 3rd, Liotta LA, Popov SG, (2011) "Discovery of mouse spleen signaling responses to anthrax using label-free quantitative phosphoproteomics via mass spectrometry." <i>Mol Cell Proteomics</i> <b>10</b>(3):M110.000927; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21189417 21189417]; doi: [https://dx.doi.org/10.1074/mcp.M110.000927 10.1074/mcp.M110.000927]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21189417 133]. | #Manes NP, Dong L, Zhou W, Du X, Reghu N, Kool AC, Choi D, Bailey CL, Petricoin EF 3rd, Liotta LA, Popov SG, (2011) "Discovery of mouse spleen signaling responses to anthrax using label-free quantitative phosphoproteomics via mass spectrometry." <i>Mol Cell Proteomics</i> <b>10</b>(3):M110.000927; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/21189417 21189417]; doi: [https://dx.doi.org/10.1074/mcp.M110.000927 10.1074/mcp.M110.000927]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/21189417 133]. | ||
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#Kettenbach AN, Deng L, Wu Y, Baldissard S, Adamo ME, Gerber SA, Moseley JB, (2015) "Quantitative phosphoproteomics reveals pathways for coordination of cell growth and division by the conserved fission yeast kinase pom1." <i>Mol Cell Proteomics</i> <b>14</b>(5):1275–87; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25720772 25720772]; doi: [https://dx.doi.org/10.1074/mcp.M114.045245 10.1074/mcp.M114.045245]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25720772 96]. | #Kettenbach AN, Deng L, Wu Y, Baldissard S, Adamo ME, Gerber SA, Moseley JB, (2015) "Quantitative phosphoproteomics reveals pathways for coordination of cell growth and division by the conserved fission yeast kinase pom1." <i>Mol Cell Proteomics</i> <b>14</b>(5):1275–87; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25720772 25720772]; doi: [https://dx.doi.org/10.1074/mcp.M114.045245 10.1074/mcp.M114.045245]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25720772 96]. | ||
#González-Prieto R, Cuijpers SA, Luijsterburg MS, van Attikum H, Vertegaal AC, (2015) "SUMOylation and PARylation cooperate to recruit and stabilize SLX4 at DNA damage sites." <i>EMBO Rep</i> <b>16</b>(4):512–9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25722289 25722289]; doi: [https://dx.doi.org/10.15252/embr.201440017 10.15252/embr.201440017]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25722289 27]. | #González-Prieto R, Cuijpers SA, Luijsterburg MS, van Attikum H, Vertegaal AC, (2015) "SUMOylation and PARylation cooperate to recruit and stabilize SLX4 at DNA damage sites." <i>EMBO Rep</i> <b>16</b>(4):512–9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25722289 25722289]; doi: [https://dx.doi.org/10.15252/embr.201440017 10.15252/embr.201440017]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25722289 27]. | ||
- | #Keshishian H, Burgess MW, Gillette MA, Mertins P, Clauser KR, Mani DR, Kuhn EW, Farrell LA, Gerszten RE, Carr SA, (2015) "Multiplexed, Quantitative Workflow for Sensitive Biomarker Discovery in Plasma Yields Novel Candidates for Early Myocardial Injury." <i>Mol Cell Proteomics</i> <b>14</b>(9):2375–93; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25724909 25724909]; doi: [https://dx.doi.org/10.1074/mcp.M114.046813 10.1074/mcp.M114.046813]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25724909 | + | #Keshishian H, Burgess MW, Gillette MA, Mertins P, Clauser KR, Mani DR, Kuhn EW, Farrell LA, Gerszten RE, Carr SA, (2015) "Multiplexed, Quantitative Workflow for Sensitive Biomarker Discovery in Plasma Yields Novel Candidates for Early Myocardial Injury." <i>Mol Cell Proteomics</i> <b>14</b>(9):2375–93; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25724909 25724909]; doi: [https://dx.doi.org/10.1074/mcp.M114.046813 10.1074/mcp.M114.046813]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25724909 298]. |
#Vogel CJ, Smit MA, Maddalo G, Possik PA, Sparidans RW, van der Burg SH, Verdegaal EM, Heck AJ, Samatar AA, Beijnen JH, Altelaar AF, Peeper DS, (2015) "Cooperative induction of apoptosis in NRAS mutant melanoma by inhibition of MEK and ROCK." <i>Pigment Cell Melanoma Res</i> <b>28</b>(3):307–17; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25728708 25728708]; doi: [https://dx.doi.org/10.1111/pcmr.12364 10.1111/pcmr.12364]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25728708 170]. | #Vogel CJ, Smit MA, Maddalo G, Possik PA, Sparidans RW, van der Burg SH, Verdegaal EM, Heck AJ, Samatar AA, Beijnen JH, Altelaar AF, Peeper DS, (2015) "Cooperative induction of apoptosis in NRAS mutant melanoma by inhibition of MEK and ROCK." <i>Pigment Cell Melanoma Res</i> <b>28</b>(3):307–17; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25728708 25728708]; doi: [https://dx.doi.org/10.1111/pcmr.12364 10.1111/pcmr.12364]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25728708 170]. | ||
#Zhang H, Deery MJ, Gannon L, Powers SJ, Lilley KS, Theodoulou FL, (2015) "Quantitative proteomics analysis of the Arg/N-end rule pathway of targeted degradation in Arabidopsis roots." <i>Proteomics</i> <b>15</b>(14):2447–57; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25728785 25728785]; doi: [https://dx.doi.org/10.1002/pmic.201400530 10.1002/pmic.201400530]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25728785 14]. | #Zhang H, Deery MJ, Gannon L, Powers SJ, Lilley KS, Theodoulou FL, (2015) "Quantitative proteomics analysis of the Arg/N-end rule pathway of targeted degradation in Arabidopsis roots." <i>Proteomics</i> <b>15</b>(14):2447–57; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25728785 25728785]; doi: [https://dx.doi.org/10.1002/pmic.201400530 10.1002/pmic.201400530]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25728785 14]. | ||
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#Madeira JP, Alpha-Bazin B, Armengaud J, Duport C, (2015) "Time dynamics of the Bacillus cereus exoproteome are shaped by cellular oxidation." <i>Front Microbiol</i> <b>6</b>:342; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25954265 25954265]; doi: [https://dx.doi.org/10.3389/fmicb.2015.00342 10.3389/fmicb.2015.00342]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25954265 30]. | #Madeira JP, Alpha-Bazin B, Armengaud J, Duport C, (2015) "Time dynamics of the Bacillus cereus exoproteome are shaped by cellular oxidation." <i>Front Microbiol</i> <b>6</b>:342; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25954265 25954265]; doi: [https://dx.doi.org/10.3389/fmicb.2015.00342 10.3389/fmicb.2015.00342]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25954265 30]. | ||
#Walther DM, Kasturi P, Zheng M, Pinkert S, Vecchi G, Ciryam P, Morimoto RI, Dobson CM, Vendruscolo M, Mann M, Hartl FU, (2015) "Widespread Proteome Remodeling and Aggregation in Aging C. elegans." <i>Cell</i> <b>161</b>(4):919–32; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25957690 25957690]; doi: [https://dx.doi.org/10.1016/j.cell.2015.03.032 10.1016/j.cell.2015.03.032]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25957690 278]. | #Walther DM, Kasturi P, Zheng M, Pinkert S, Vecchi G, Ciryam P, Morimoto RI, Dobson CM, Vendruscolo M, Mann M, Hartl FU, (2015) "Widespread Proteome Remodeling and Aggregation in Aging C. elegans." <i>Cell</i> <b>161</b>(4):919–32; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25957690 25957690]; doi: [https://dx.doi.org/10.1016/j.cell.2015.03.032 10.1016/j.cell.2015.03.032]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25957690 278]. | ||
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#Hosp F, Vossfeldt H, Heinig M, Vasiljevic D, Arumughan A, Wyler E, Genetic and Environmental Risk for Alzheimer’s Disease GERAD1 Consortium., Landthaler M, Hubner N, Wanker EE, Lannfelt L, Ingelsson M, Lalowski M, Voigt A, Selbach M, (2015) "Quantitative interaction proteomics of neurodegenerative disease proteins." <i>Cell Rep</i> <b>11</b>(7):1134–46; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25959826 25959826]; doi: [https://dx.doi.org/10.1016/j.celrep.2015.04.030 10.1016/j.celrep.2015.04.030]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25959826 122]. | #Hosp F, Vossfeldt H, Heinig M, Vasiljevic D, Arumughan A, Wyler E, Genetic and Environmental Risk for Alzheimer’s Disease GERAD1 Consortium., Landthaler M, Hubner N, Wanker EE, Lannfelt L, Ingelsson M, Lalowski M, Voigt A, Selbach M, (2015) "Quantitative interaction proteomics of neurodegenerative disease proteins." <i>Cell Rep</i> <b>11</b>(7):1134–46; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25959826 25959826]; doi: [https://dx.doi.org/10.1016/j.celrep.2015.04.030 10.1016/j.celrep.2015.04.030]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25959826 122]. | ||
#Tay AP, Pang CN, Twine NA, Hart-Smith G, Harkness L, Kassem M, Wilkins MR, (2015) "Proteomic Validation of Transcript Isoforms, Including Those Assembled from RNA-Seq Data." <i>J Proteome Res</i> <b>14</b>(9):3541–54; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25961807 25961807]; doi: [https://dx.doi.org/10.1021/pr5011394 10.1021/pr5011394]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25961807 77]. | #Tay AP, Pang CN, Twine NA, Hart-Smith G, Harkness L, Kassem M, Wilkins MR, (2015) "Proteomic Validation of Transcript Isoforms, Including Those Assembled from RNA-Seq Data." <i>J Proteome Res</i> <b>14</b>(9):3541–54; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25961807 25961807]; doi: [https://dx.doi.org/10.1021/pr5011394 10.1021/pr5011394]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/25961807 77]. | ||
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#Reddy RJ, Gajadhar AS, Swenson EJ, Rothenberg DA, Curran TG, White FM, (2016) "Early signaling dynamics of the epidermal growth factor receptor." <i>Proc Natl Acad Sci U S A</i> <b>113</b>(11):3114–9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26929352 26929352]; doi: [https://dx.doi.org/10.1073/pnas.1521288113 10.1073/pnas.1521288113]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26929352 30]. | #Reddy RJ, Gajadhar AS, Swenson EJ, Rothenberg DA, Curran TG, White FM, (2016) "Early signaling dynamics of the epidermal growth factor receptor." <i>Proc Natl Acad Sci U S A</i> <b>113</b>(11):3114–9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26929352 26929352]; doi: [https://dx.doi.org/10.1073/pnas.1521288113 10.1073/pnas.1521288113]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26929352 30]. | ||
#Bigenzahn JW, Fauster A, Rebsamen M, Kandasamy RK, Scorzoni S, Vladimer GI, Müller AC, Gstaiger M, Zuber J, Bennett KL, Superti-Furga G, (2016) "An Inducible Retroviral Expression System for Tandem Affinity Purification Mass-Spectrometry-Based Proteomics Identifies Mixed Lineage Kinase Domain-like Protein (MLKL) as an Heat Shock Protein 90 (HSP90) Client." <i>Mol Cell Proteomics</i> <b>15</b>(3):1139–50; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26933192 26933192]; doi: [https://dx.doi.org/10.1074/mcp.O115.055350 10.1074/mcp.O115.055350 ]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26933192 16]. | #Bigenzahn JW, Fauster A, Rebsamen M, Kandasamy RK, Scorzoni S, Vladimer GI, Müller AC, Gstaiger M, Zuber J, Bennett KL, Superti-Furga G, (2016) "An Inducible Retroviral Expression System for Tandem Affinity Purification Mass-Spectrometry-Based Proteomics Identifies Mixed Lineage Kinase Domain-like Protein (MLKL) as an Heat Shock Protein 90 (HSP90) Client." <i>Mol Cell Proteomics</i> <b>15</b>(3):1139–50; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26933192 26933192]; doi: [https://dx.doi.org/10.1074/mcp.O115.055350 10.1074/mcp.O115.055350 ]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26933192 16]. | ||
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#de Torre-Minguela C, Barberà-Cremades M, Gómez AI, Martín-Sánchez F, Pelegrín P, (2016) "Macrophage activation and polarization modify P2X7 receptor secretome influencing the inflammatory process." <i>Sci Rep</i> <b>6</b>:22586; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26935289 26935289]; doi: [https://dx.doi.org/10.1038/srep22586 10.1038/srep22586]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26935289 118]. | #de Torre-Minguela C, Barberà-Cremades M, Gómez AI, Martín-Sánchez F, Pelegrín P, (2016) "Macrophage activation and polarization modify P2X7 receptor secretome influencing the inflammatory process." <i>Sci Rep</i> <b>6</b>:22586; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26935289 26935289]; doi: [https://dx.doi.org/10.1038/srep22586 10.1038/srep22586]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26935289 118]. | ||
#Ly A, Merl-Pham J, Priller M, Gruhn F, Senninger N, Ueffing M, Hauck SM, (2016) "Proteomic Profiling Suggests Central Role Of STAT Signaling during Retinal Degeneration in the rd10 Mouse Model." <i>J Proteome Res</i> <b>15</b>(4):1350–9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26939627 26939627]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00111 10.1021/acs.jproteome.6b00111]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26939627 24]. | #Ly A, Merl-Pham J, Priller M, Gruhn F, Senninger N, Ueffing M, Hauck SM, (2016) "Proteomic Profiling Suggests Central Role Of STAT Signaling during Retinal Degeneration in the rd10 Mouse Model." <i>J Proteome Res</i> <b>15</b>(4):1350–9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26939627 26939627]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00111 10.1021/acs.jproteome.6b00111]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/26939627 24]. | ||
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#Swenson JM, Colmenares SU, Strom AR, Costes SV, Karpen GH, (2016) "The composition and organization of Drosophila heterochromatin are heterogeneous and dynamic." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27514026 27514026]; doi: [https://dx.doi.org/10.7554/eLife.16096 10.7554/eLife.16096]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27514026 4]. | #Swenson JM, Colmenares SU, Strom AR, Costes SV, Karpen GH, (2016) "The composition and organization of Drosophila heterochromatin are heterogeneous and dynamic." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27514026 27514026]; doi: [https://dx.doi.org/10.7554/eLife.16096 10.7554/eLife.16096]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27514026 4]. | ||
#Naboulsi W, Bracht T, Megger DA, Reis H, Ahrens M, Turewicz M, Eisenacher M, Tautges S, Canbay AE, Meyer HE, Weber F, Baba HA, Sitek B, (2016) "Quantitative proteome analysis reveals the correlation between endocytosis-associated proteins and hepatocellular carcinoma dedifferentiation." <i>Biochim Biophys Acta</i> <b>1864</b>(11):1579–85; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27519163 27519163]; doi: [https://dx.doi.org/10.1016/j.bbapap.2016.08.005 10.1016/j.bbapap.2016.08.005]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27519163 36]. | #Naboulsi W, Bracht T, Megger DA, Reis H, Ahrens M, Turewicz M, Eisenacher M, Tautges S, Canbay AE, Meyer HE, Weber F, Baba HA, Sitek B, (2016) "Quantitative proteome analysis reveals the correlation between endocytosis-associated proteins and hepatocellular carcinoma dedifferentiation." <i>Biochim Biophys Acta</i> <b>1864</b>(11):1579–85; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27519163 27519163]; doi: [https://dx.doi.org/10.1016/j.bbapap.2016.08.005 10.1016/j.bbapap.2016.08.005]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27519163 36]. | ||
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#Rasmussen MH, Lyskjær I, Jersie-Christensen RR, Tarpgaard LS, Primdal-Bengtson B, Nielsen MM, Pedersen JS, Hansen TP, Hansen F, Olsen JV, Pfeiffer P, Ørntoft TF, Andersen CL, (2016) "miR-625-3p regulates oxaliplatin resistance by targeting MAP2K6-p38 signalling in human colorectal adenocarcinoma cells." <i>Nat Commun</i> <b>7</b>:12436; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27526785 27526785]; doi: [https://dx.doi.org/10.1038/ncomms12436 10.1038/ncomms12436]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27526785 24]. | #Rasmussen MH, Lyskjær I, Jersie-Christensen RR, Tarpgaard LS, Primdal-Bengtson B, Nielsen MM, Pedersen JS, Hansen TP, Hansen F, Olsen JV, Pfeiffer P, Ørntoft TF, Andersen CL, (2016) "miR-625-3p regulates oxaliplatin resistance by targeting MAP2K6-p38 signalling in human colorectal adenocarcinoma cells." <i>Nat Commun</i> <b>7</b>:12436; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27526785 27526785]; doi: [https://dx.doi.org/10.1038/ncomms12436 10.1038/ncomms12436]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27526785 24]. | ||
#Chatterjee S, Stupp GS, Park SK, Ducom JC, Yates JR 3rd, Su AI, Wolan DW, (2016) "A comprehensive and scalable database search system for metaproteomics." <i>BMC Genomics</i> <b>17</b>(1):642; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27528457 27528457]; doi: [https://dx.doi.org/10.1186/s12864-016-2855-3 10.1186/s12864-016-2855-3]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27528457 28]. | #Chatterjee S, Stupp GS, Park SK, Ducom JC, Yates JR 3rd, Su AI, Wolan DW, (2016) "A comprehensive and scalable database search system for metaproteomics." <i>BMC Genomics</i> <b>17</b>(1):642; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27528457 27528457]; doi: [https://dx.doi.org/10.1186/s12864-016-2855-3 10.1186/s12864-016-2855-3]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27528457 28]. | ||
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#Wei W, Luo W, Wu F, Peng X, Zhang Y, Zhang M, Zhao Y, Su N, Qi Y, Chen L, Zhang Y, Wen B, He F, Xu P, (2016) "Deep Coverage Proteomics Identifies More Low-Abundance Missing Proteins in Human Testis Tissue with Q-Exactive HF Mass Spectrometer." <i>J Proteome Res</i> <b>15</b>(11):3988–3997; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27535590 27535590]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00390 10.1021/acs.jproteome.6b00390]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27535590 150]. | #Wei W, Luo W, Wu F, Peng X, Zhang Y, Zhang M, Zhao Y, Su N, Qi Y, Chen L, Zhang Y, Wen B, He F, Xu P, (2016) "Deep Coverage Proteomics Identifies More Low-Abundance Missing Proteins in Human Testis Tissue with Q-Exactive HF Mass Spectrometer." <i>J Proteome Res</i> <b>15</b>(11):3988–3997; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27535590 27535590]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00390 10.1021/acs.jproteome.6b00390]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27535590 150]. | ||
#Dobó J, Szakács D, Oroszlán G, Kortvely E, Kiss B, Boros E, Szász R, Závodszky P, Gál P, Pál G, (2016) "MASP-3 is the exclusive pro-factor D activator in resting blood: the lectin and the alternative complement pathways are fundamentally linked." <i>Sci Rep</i> <b>6</b>:31877; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27535802 27535802]; doi: [https://dx.doi.org/10.1038/srep31877 10.1038/srep31877]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27535802 6]. | #Dobó J, Szakács D, Oroszlán G, Kortvely E, Kiss B, Boros E, Szász R, Závodszky P, Gál P, Pál G, (2016) "MASP-3 is the exclusive pro-factor D activator in resting blood: the lectin and the alternative complement pathways are fundamentally linked." <i>Sci Rep</i> <b>6</b>:31877; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27535802 27535802]; doi: [https://dx.doi.org/10.1038/srep31877 10.1038/srep31877]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27535802 6]. | ||
- | #Zhang P, Karani R, Turner RL, Dufresne C, Ferri S, Van Eyk JE, Semba RD, (2016) "The proteome of normal human retrobulbar optic nerve and sclera." <i>Proteomics</i> <b>16</b>(19):2592–2596; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27538499 27538499]; doi: [https://dx.doi.org/10.1002/pmic.201600229 10.1002/pmic.201600229]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27538499 | + | #Zhang P, Karani R, Turner RL, Dufresne C, Ferri S, Van Eyk JE, Semba RD, (2016) "The proteome of normal human retrobulbar optic nerve and sclera." <i>Proteomics</i> <b>16</b>(19):2592–2596; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27538499 27538499]; doi: [https://dx.doi.org/10.1002/pmic.201600229 10.1002/pmic.201600229]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27538499 60]. |
#Walley JW, Sartor RC, Shen Z, Schmitz RJ, Wu KJ, Urich MA, Nery JR, Smith LG, Schnable JC, Ecker JR, Briggs SP, (2016) "Integration of omic networks in a developmental atlas of maize." <i>Science</i> <b>353</b>(6301):814–8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27540173 27540173]; doi: [https://dx.doi.org/10.1126/science.aag1125 10.1126/science.aag1125]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27540173 10350]. | #Walley JW, Sartor RC, Shen Z, Schmitz RJ, Wu KJ, Urich MA, Nery JR, Smith LG, Schnable JC, Ecker JR, Briggs SP, (2016) "Integration of omic networks in a developmental atlas of maize." <i>Science</i> <b>353</b>(6301):814–8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27540173 27540173]; doi: [https://dx.doi.org/10.1126/science.aag1125 10.1126/science.aag1125]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27540173 10350]. | ||
#Xie Y, Wang J, Zhang Y, Liu X, Wang X, Liu K, Huang X, Wang Y, (2016) "Quantitative profiling of spreading-coupled protein tyrosine phosphorylation in migratory cells." <i>Sci Rep</i> <b>6</b>:31811; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27554326 27554326]; doi: [https://dx.doi.org/10.1038/srep31811 10.1038/srep31811]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27554326 6]. | #Xie Y, Wang J, Zhang Y, Liu X, Wang X, Liu K, Huang X, Wang Y, (2016) "Quantitative profiling of spreading-coupled protein tyrosine phosphorylation in migratory cells." <i>Sci Rep</i> <b>6</b>:31811; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27554326 27554326]; doi: [https://dx.doi.org/10.1038/srep31811 10.1038/srep31811]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/27554326 6]. | ||
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#Kliza K, Taumer C, Pinzuti I, Franz-Wachtel M, Kunzelmann S, Stieglitz B, Macek B, Husnjak K, (2017) "Internally tagged ubiquitin: a tool to identify linear polyubiquitin-modified proteins by mass spectrometry." <i>Nat Methods</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28319114 28319114]; doi: [https://dx.doi.org/10.1038/nmeth.4228 10.1038/nmeth.4228]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28319114 32]. | #Kliza K, Taumer C, Pinzuti I, Franz-Wachtel M, Kunzelmann S, Stieglitz B, Macek B, Husnjak K, (2017) "Internally tagged ubiquitin: a tool to identify linear polyubiquitin-modified proteins by mass spectrometry." <i>Nat Methods</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28319114 28319114]; doi: [https://dx.doi.org/10.1038/nmeth.4228 10.1038/nmeth.4228]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28319114 32]. | ||
#Khodadoust MS, Olsson N, Wagar LE, Haabeth OA, Chen B, Swaminathan K, Rawson K, Liu CL, Steiner D, Lund P, Rao S, Zhang L, Marceau C, Stehr H, Newman AM, Czerwinski DK, Carlton VE, Moorhead M, Faham M, Kohrt HE, Carette J, Green MR, Davis MM, Levy R, Elias JE, Alizadeh AA, (2017) "Antigen presentation profiling reveals recognition of lymphoma immunoglobulin neoantigens." <i>Nature</i> <b>543</b>(7647):723–727; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28329770 28329770]; doi: [https://dx.doi.org/10.1038/nature21433 10.1038/nature21433]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28329770 147]. | #Khodadoust MS, Olsson N, Wagar LE, Haabeth OA, Chen B, Swaminathan K, Rawson K, Liu CL, Steiner D, Lund P, Rao S, Zhang L, Marceau C, Stehr H, Newman AM, Czerwinski DK, Carlton VE, Moorhead M, Faham M, Kohrt HE, Carette J, Green MR, Davis MM, Levy R, Elias JE, Alizadeh AA, (2017) "Antigen presentation profiling reveals recognition of lymphoma immunoglobulin neoantigens." <i>Nature</i> <b>543</b>(7647):723–727; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28329770 28329770]; doi: [https://dx.doi.org/10.1038/nature21433 10.1038/nature21433]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28329770 147]. | ||
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#Zhang X, Maity T, Kashyap MK, Bansal M, Venugopalan A, Singh S, Awasthi S, Marimuthu A, Jacob HK, Belkina N, Pitts S, Cultraro CM, Gao S, Kirkali F, Biswas R, Chaerkady R, Califano A, Pandey A, Guha U, (2017) "Quantitative tyrosine phosphoproteomics of EGFR tyrosine kinase inhibitor-treated lung adenocarcinoma cells reveals potential novel biomarkers of therapeutic response." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28331001 28331001]; doi: [https://dx.doi.org/10.1074/mcp.M117.067439 10.1074/mcp.M117.067439]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28331001 41]. | #Zhang X, Maity T, Kashyap MK, Bansal M, Venugopalan A, Singh S, Awasthi S, Marimuthu A, Jacob HK, Belkina N, Pitts S, Cultraro CM, Gao S, Kirkali F, Biswas R, Chaerkady R, Califano A, Pandey A, Guha U, (2017) "Quantitative tyrosine phosphoproteomics of EGFR tyrosine kinase inhibitor-treated lung adenocarcinoma cells reveals potential novel biomarkers of therapeutic response." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28331001 28331001]; doi: [https://dx.doi.org/10.1074/mcp.M117.067439 10.1074/mcp.M117.067439]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28331001 41]. | ||
#Nathan A, Reinhardt P, Kruspe D, Jörß T, Groth M, Nolte H, Habenicht A, Herrmann J, Holschbach V, Toth B, Krüger M, Wang ZQ, Platzer M, Englert C, (2017) "The Wilms tumor protein Wt1 contributes to female fertility by regulating oviductal proteostasis." <i>Hum Mol Genet</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28334862 28334862]; doi: [https://dx.doi.org/10.1093/hmg/ddx075 10.1093/hmg/ddx075]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28334862 48]. | #Nathan A, Reinhardt P, Kruspe D, Jörß T, Groth M, Nolte H, Habenicht A, Herrmann J, Holschbach V, Toth B, Krüger M, Wang ZQ, Platzer M, Englert C, (2017) "The Wilms tumor protein Wt1 contributes to female fertility by regulating oviductal proteostasis." <i>Hum Mol Genet</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28334862 28334862]; doi: [https://dx.doi.org/10.1093/hmg/ddx075 10.1093/hmg/ddx075]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28334862 48]. | ||
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#Cuijpers SAG, Willemstein E, Vertegaal ACO, (2017) "<b>Converging SUMO and ubiquitin signaling: improved methodology identifies co-modified target proteins</b>." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28951443 28951443]; doi: [https://dx.doi.org/10.1074/mcp.TIR117.000152 10.1074/mcp.TIR117.000152]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28951443 102]. | #Cuijpers SAG, Willemstein E, Vertegaal ACO, (2017) "<b>Converging SUMO and ubiquitin signaling: improved methodology identifies co-modified target proteins</b>." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28951443 28951443]; doi: [https://dx.doi.org/10.1074/mcp.TIR117.000152 10.1074/mcp.TIR117.000152]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28951443 102]. | ||
#Seddigh P, Bracht T, Molinier-Frenkel V, Castellano F, Kniemeyer O, Schuster M, Weski J, Hasenberg A, Kraus A, Poschet G, Hager T, Theegarte D, Opitz C, Brakhage AA, Sitek B, Hasenberg M, Gunzer M, (2017) "Quantitative Analysis of Proteome Modulations in Alveolar Epithelial Type II Cells in Response to Pulmonary <i>Aspergillus fumigatus</i> Infection." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28951444 28951444]; doi: [https://dx.doi.org/10.1074/mcp.RA117.000072 10.1074/mcp.RA117.000072]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28951444 18]. | #Seddigh P, Bracht T, Molinier-Frenkel V, Castellano F, Kniemeyer O, Schuster M, Weski J, Hasenberg A, Kraus A, Poschet G, Hager T, Theegarte D, Opitz C, Brakhage AA, Sitek B, Hasenberg M, Gunzer M, (2017) "Quantitative Analysis of Proteome Modulations in Alveolar Epithelial Type II Cells in Response to Pulmonary <i>Aspergillus fumigatus</i> Infection." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28951444 28951444]; doi: [https://dx.doi.org/10.1074/mcp.RA117.000072 10.1074/mcp.RA117.000072]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28951444 18]. | ||
- | |||
#Wang Q, Lu Q, (2017) "Plasma membrane-derived extracellular microvesicles mediate non-canonical intercellular NOTCH signaling." <i>Nat Commun</i> <b>8</b>(1):709; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28955033 28955033]; doi: [https://dx.doi.org/10.1038/s41467-017-00767-2 10.1038/s41467-017-00767-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28955033 2]. | #Wang Q, Lu Q, (2017) "Plasma membrane-derived extracellular microvesicles mediate non-canonical intercellular NOTCH signaling." <i>Nat Commun</i> <b>8</b>(1):709; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28955033 28955033]; doi: [https://dx.doi.org/10.1038/s41467-017-00767-2 10.1038/s41467-017-00767-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28955033 2]. | ||
#Triana S, de Cock H, Ohm RA, Danies G, Wösten HAB, Restrepo S, González Barrios AF, Celis A, (2017) "Lipid Metabolic Versatility in <i>Malassezia</i> spp. Yeasts Studied through Metabolic Modeling." <i>Front Microbiol</i> <b>8</b>:1772; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28959251 28959251]; doi: [https://dx.doi.org/10.3389/fmicb.2017.01772 10.3389/fmicb.2017.01772]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28959251 37]. | #Triana S, de Cock H, Ohm RA, Danies G, Wösten HAB, Restrepo S, González Barrios AF, Celis A, (2017) "Lipid Metabolic Versatility in <i>Malassezia</i> spp. Yeasts Studied through Metabolic Modeling." <i>Front Microbiol</i> <b>8</b>:1772; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28959251 28959251]; doi: [https://dx.doi.org/10.3389/fmicb.2017.01772 10.3389/fmicb.2017.01772]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28959251 37]. | ||
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#Zhan Y, Marchand CH, Maes A, Mauries A, Sun Y, Dhaliwal JS, Uniacke J, Arragain S, Jiang H, Gold ND, Martin VJJ, Lemaire SD, Zerges W, (2018) "Pyrenoid functions revealed by proteomics in Chlamydomonas reinhardtii." <i>PLoS One</i> <b>13</b>(2):e0185039; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29481573 29481573]; doi: [https://dx.doi.org/10.1371/journal.pone.0185039 10.1371/journal.pone.0185039]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29481573 16]. | #Zhan Y, Marchand CH, Maes A, Mauries A, Sun Y, Dhaliwal JS, Uniacke J, Arragain S, Jiang H, Gold ND, Martin VJJ, Lemaire SD, Zerges W, (2018) "Pyrenoid functions revealed by proteomics in Chlamydomonas reinhardtii." <i>PLoS One</i> <b>13</b>(2):e0185039; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29481573 29481573]; doi: [https://dx.doi.org/10.1371/journal.pone.0185039 10.1371/journal.pone.0185039]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29481573 16]. | ||
#Zeiner PS, Zinke J, Kowalewski DJ, Bernatz S, Tichy J, Ronellenfitsch MW, Thorsen F, Berger A, Forster MT, Muller A, Steinbach JP, Beschorner R, Wischhusen J, Kvasnicka HM, Plate KH, Stefanović S, Weide B, Mittelbronn M, Harter PN, (2018) "CD74 regulates complexity of tumor cell HLA class II peptidome in brain metastasis and is a positive prognostic marker for patient survival." <i>Acta Neuropathol Commun</i> <b>6</b>(1):18; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29490700 29490700]; doi: [https://dx.doi.org/10.1186/s40478-018-0521-5 10.1186/s40478-018-0521-5]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29490700 20]. | #Zeiner PS, Zinke J, Kowalewski DJ, Bernatz S, Tichy J, Ronellenfitsch MW, Thorsen F, Berger A, Forster MT, Muller A, Steinbach JP, Beschorner R, Wischhusen J, Kvasnicka HM, Plate KH, Stefanović S, Weide B, Mittelbronn M, Harter PN, (2018) "CD74 regulates complexity of tumor cell HLA class II peptidome in brain metastasis and is a positive prognostic marker for patient survival." <i>Acta Neuropathol Commun</i> <b>6</b>(1):18; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29490700 29490700]; doi: [https://dx.doi.org/10.1186/s40478-018-0521-5 10.1186/s40478-018-0521-5]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29490700 20]. | ||
- | |||
#Olsson N, Schultz LM, Zhang L, Khodadoust MS, Narayan R, Czerwinski DK, Levy R, Elias JE, (2018) "T-cell immunopeptidomes reveal cell subtype surface markers derived from intracellular proteins." <i>Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29493099 29493099]; doi: [https://dx.doi.org/10.1002/pmic.201700410 10.1002/pmic.201700410]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29493099 30]. | #Olsson N, Schultz LM, Zhang L, Khodadoust MS, Narayan R, Czerwinski DK, Levy R, Elias JE, (2018) "T-cell immunopeptidomes reveal cell subtype surface markers derived from intracellular proteins." <i>Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29493099 29493099]; doi: [https://dx.doi.org/10.1002/pmic.201700410 10.1002/pmic.201700410]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29493099 30]. | ||
#Goel RK, Paczkowska M, Reimand J, Napper S, Lukong KE, (2018) "Phosphoproteomics analysis identifies novel candidate substrates of the non-receptor tyrosine kinase, SRMS." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29496907 29496907]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000643 10.1074/mcp.RA118.000643]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29496907 4]. | #Goel RK, Paczkowska M, Reimand J, Napper S, Lukong KE, (2018) "Phosphoproteomics analysis identifies novel candidate substrates of the non-receptor tyrosine kinase, SRMS." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29496907 29496907]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000643 10.1074/mcp.RA118.000643]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29496907 4]. | ||
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#Liang P, Zhu W, Lan T, Tao Q, (2018) "Detection of salivary protein biomarkers of saliva secretion disorder in a primary Sjögren syndrome murine model." <i>J Pharm Biomed Anal</i> <b>154</b>:252–262; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29558726 29558726]; doi: [https://dx.doi.org/10.1016/j.jpba.2018.03.023 10.1016/j.jpba.2018.03.023]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29558726 2]. | #Liang P, Zhu W, Lan T, Tao Q, (2018) "Detection of salivary protein biomarkers of saliva secretion disorder in a primary Sjögren syndrome murine model." <i>J Pharm Biomed Anal</i> <b>154</b>:252–262; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29558726 29558726]; doi: [https://dx.doi.org/10.1016/j.jpba.2018.03.023 10.1016/j.jpba.2018.03.023]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29558726 2]. | ||
#Saei AA, Sabatier P, Güler Tokat Ü, Chernobrovkin A, Pirmoradian M, Zubarev RA, (2018) "Comparative proteomics of dying and surviving cancer cells improves the identification of drug targets and sheds light on cell life/death decisions." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29572246 29572246]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000610 10.1074/mcp.RA118.000610]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29572246 90]. | #Saei AA, Sabatier P, Güler Tokat Ü, Chernobrovkin A, Pirmoradian M, Zubarev RA, (2018) "Comparative proteomics of dying and surviving cancer cells improves the identification of drug targets and sheds light on cell life/death decisions." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29572246 29572246]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000610 10.1074/mcp.RA118.000610]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29572246 90]. | ||
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#Zhang C, Leng W, Sun C, Lu T, Chen Z, Men X, Wang Y, Wang G, Zhen B, Qin J, (2018) "Urine Proteome Profiling Predicts Lung Cancer from Control Cases and Other Tumors." <i>EBioMedicine</i> <b>30</b>:120–128; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29576497 29576497]; doi: [https://dx.doi.org/10.1016/j.ebiom.2018.03.009 10.1016/j.ebiom.2018.03.009]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29576497 557]. | #Zhang C, Leng W, Sun C, Lu T, Chen Z, Men X, Wang Y, Wang G, Zhen B, Qin J, (2018) "Urine Proteome Profiling Predicts Lung Cancer from Control Cases and Other Tumors." <i>EBioMedicine</i> <b>30</b>:120–128; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29576497 29576497]; doi: [https://dx.doi.org/10.1016/j.ebiom.2018.03.009 10.1016/j.ebiom.2018.03.009]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29576497 557]. | ||
#Haller C, Chaskar P, Piccand J, Cominetti O, Macron C, Dayon L, Kraus MR, (2018) "Insights into islet differentiation and maturation through proteomic characterization of a human iPSC-derived pancreatic endocrine model." <i>Proteomics Clin Appl</i> <b></b>:e1600173; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29578310 29578310]; doi: [https://dx.doi.org/10.1002/prca.201600173 10.1002/prca.201600173]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29578310 218]. | #Haller C, Chaskar P, Piccand J, Cominetti O, Macron C, Dayon L, Kraus MR, (2018) "Insights into islet differentiation and maturation through proteomic characterization of a human iPSC-derived pancreatic endocrine model." <i>Proteomics Clin Appl</i> <b></b>:e1600173; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29578310 29578310]; doi: [https://dx.doi.org/10.1002/prca.201600173 10.1002/prca.201600173]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29578310 218]. | ||
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#He C, Jia C, Zhang Y, Xu P, (2018) "Enrichment-Based Proteogenomics Identifies Microproteins, Missing Proteins, and Novel smORFs in Saccharomyces cerevisiae." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29897761 29897761]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00032 10.1021/acs.jproteome.8b00032]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29897761 20]. | #He C, Jia C, Zhang Y, Xu P, (2018) "Enrichment-Based Proteogenomics Identifies Microproteins, Missing Proteins, and Novel smORFs in Saccharomyces cerevisiae." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29897761 29897761]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00032 10.1021/acs.jproteome.8b00032]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29897761 20]. | ||
#Adav SS, Wei J, Terence Y, Ang BC, Yip LW, Sze SK, (2018) "Proteomic Analysis of Aqueous Humor from Primary Open Angle Glaucoma Patients on Drug Treatment Revealed Altered Complement Activation Cascade." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29901396 29901396]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00244 10.1021/acs.jproteome.8b00244]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29901396 80]. | #Adav SS, Wei J, Terence Y, Ang BC, Yip LW, Sze SK, (2018) "Proteomic Analysis of Aqueous Humor from Primary Open Angle Glaucoma Patients on Drug Treatment Revealed Altered Complement Activation Cascade." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29901396 29901396]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00244 10.1021/acs.jproteome.8b00244]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29901396 80]. | ||
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#Steenbeek SC, Pham TV, de Ligt J, Zomer A, Knol JC, Piersma SR, Schelfhorst T, Huisjes R, Schiffelers RM, Cuppen E, Jimenez CR, van Rheenen J, (2018) "Cancer cells copy migratory behavior and exchange signaling networks via extracellular vesicles." <i>EMBO J</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29907695 29907695]; doi: [https://dx.doi.org/10.15252/embj.201798357 10.15252/embj.201798357]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29907695 67]. | #Steenbeek SC, Pham TV, de Ligt J, Zomer A, Knol JC, Piersma SR, Schelfhorst T, Huisjes R, Schiffelers RM, Cuppen E, Jimenez CR, van Rheenen J, (2018) "Cancer cells copy migratory behavior and exchange signaling networks via extracellular vesicles." <i>EMBO J</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29907695 29907695]; doi: [https://dx.doi.org/10.15252/embj.201798357 10.15252/embj.201798357]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29907695 67]. | ||
#Selvan LDN, Danda R, Madugundu AK, Puttamallesh VN, Sathe GJ, Krishnan UM, Khetan V, Rishi P, Prasad TSK, Pandey A, Krishnakumar S, Gowda H, Elchuri SV, (2018) "Phosphoproteomics of Retinoblastoma: A Pilot Study Identifies Aberrant Kinases." <i>Molecules</i> <b>23</b>(6):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29914080 29914080]; doi: [https://dx.doi.org/10.3390/molecules23061454 10.3390/molecules23061454]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29914080 12]. | #Selvan LDN, Danda R, Madugundu AK, Puttamallesh VN, Sathe GJ, Krishnan UM, Khetan V, Rishi P, Prasad TSK, Pandey A, Krishnakumar S, Gowda H, Elchuri SV, (2018) "Phosphoproteomics of Retinoblastoma: A Pilot Study Identifies Aberrant Kinases." <i>Molecules</i> <b>23</b>(6):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29914080 29914080]; doi: [https://dx.doi.org/10.3390/molecules23061454 10.3390/molecules23061454]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29914080 12]. | ||
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#Schiza C, Korbakis D, Panteleli E, Jarvi K, Drabovich AP, Diamandis EP, (2018) "Discovery of a human testis-specific protein complex TEX101-DPEP3 and selection of its disrupting antibodies." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30097533 30097533]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000749 10.1074/mcp.RA118.000749]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30097533 44]. | #Schiza C, Korbakis D, Panteleli E, Jarvi K, Drabovich AP, Diamandis EP, (2018) "Discovery of a human testis-specific protein complex TEX101-DPEP3 and selection of its disrupting antibodies." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30097533 30097533]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000749 10.1074/mcp.RA118.000749]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30097533 44]. | ||
#Hwang H, Jeong JE, Lee HK, Yun KN, An HJ, Lee B, Paik YK, Jeong TS, Yee GT, Kim JY, Yoo JS, (2018) "Identification of Missing Proteins in Human Olfactory Epithelial Tissue by Liquid Chromatography-Tandem Mass Spectrometry." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30113170 30113170]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00408 10.1021/acs.jproteome.8b00408]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30113170 23]. | #Hwang H, Jeong JE, Lee HK, Yun KN, An HJ, Lee B, Paik YK, Jeong TS, Yee GT, Kim JY, Yoo JS, (2018) "Identification of Missing Proteins in Human Olfactory Epithelial Tissue by Liquid Chromatography-Tandem Mass Spectrometry." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30113170 30113170]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00408 10.1021/acs.jproteome.8b00408]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30113170 23]. | ||
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#Simunovic F, Winninger O, Strassburg S, Koch HG, Finkenzeller G, Stark GB, Lampert FM, (2019) "Increased differentiation and production of extracellular matrix components of primary human osteoblasts after cocultivation with endothelial cells: A quantitative proteomics approach." <i>J Cell Biochem</i> <b>120</b>(1):396–404; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30126049 30126049]; doi: [https://dx.doi.org/10.1002/jcb.27394 10.1002/jcb.27394]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30126049 20]. | #Simunovic F, Winninger O, Strassburg S, Koch HG, Finkenzeller G, Stark GB, Lampert FM, (2019) "Increased differentiation and production of extracellular matrix components of primary human osteoblasts after cocultivation with endothelial cells: A quantitative proteomics approach." <i>J Cell Biochem</i> <b>120</b>(1):396–404; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30126049 30126049]; doi: [https://dx.doi.org/10.1002/jcb.27394 10.1002/jcb.27394]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30126049 20]. | ||
#Shen ZQ, Shi B, Wang TR, Jiao J, Shang X, Wu QJ, Zhou YM, Cao TF, Du Q, Wang XX, Li D, (2018) "Characterization of the Sperm Proteome and Reproductive Outcomes with <i>in Vitro</i> Fertilization after a Reduction in Male Ejaculatory Abstinence Period." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30126978 30126978]; doi: [https://dx.doi.org/10.1074/mcp.RA117.000541 10.1074/mcp.RA117.000541]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30126978 18]. | #Shen ZQ, Shi B, Wang TR, Jiao J, Shang X, Wu QJ, Zhou YM, Cao TF, Du Q, Wang XX, Li D, (2018) "Characterization of the Sperm Proteome and Reproductive Outcomes with <i>in Vitro</i> Fertilization after a Reduction in Male Ejaculatory Abstinence Period." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30126978 30126978]; doi: [https://dx.doi.org/10.1074/mcp.RA117.000541 10.1074/mcp.RA117.000541]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30126978 18]. | ||
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#Guneykaya D, Ivanov A, Hernandez DP, Haage V, Wojtas B, Meyer N, Maricos M, Jordan P, Buonfiglioli A, Gielniewski B, Ochocka N, Cömert C, Friedrich C, Artiles LS, Kaminska B, Mertins P, Beule D, Kettenmann H, Wolf SA, (2018) "Transcriptional and Translational Differences of Microglia from Male and Female Brains." <i>Cell Rep</i> <b>24</b>(10):2773–2783.e6; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30184509 30184509]; doi: [https://dx.doi.org/10.1016/j.celrep.2018.08.001 10.1016/j.celrep.2018.08.001]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30184509 8]. | #Guneykaya D, Ivanov A, Hernandez DP, Haage V, Wojtas B, Meyer N, Maricos M, Jordan P, Buonfiglioli A, Gielniewski B, Ochocka N, Cömert C, Friedrich C, Artiles LS, Kaminska B, Mertins P, Beule D, Kettenmann H, Wolf SA, (2018) "Transcriptional and Translational Differences of Microglia from Male and Female Brains." <i>Cell Rep</i> <b>24</b>(10):2773–2783.e6; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30184509 30184509]; doi: [https://dx.doi.org/10.1016/j.celrep.2018.08.001 10.1016/j.celrep.2018.08.001]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30184509 8]. | ||
#Carnielli CM, Macedo CCS, De Rossi T, Granato DC, Rivera C, Domingues RR, Pauletti BA, Yokoo S, Heberle H, Busso-Lopes AF, Cervigne NK, Sawazaki-Calone I, Meirelles GV, Marchi FA, Telles GP, Minghim R, Ribeiro ACP, Brandão TB, de Castro G Jr, González-Arriagada WA, Gomes A, Penteado F, Santos-Silva AR, Lopes MA, Rodrigues PC, Sundquist E, Salo T, da Silva SD, Alaoui-Jamali MA, Graner E, Fox JW, Coletta RD, Paes Leme AF, (2018) "Combining discovery and targeted proteomics reveals a prognostic signature in oral cancer." <i>Nat Commun</i> <b>9</b>(1):3598; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30185791 30185791]; doi: [https://dx.doi.org/10.1038/s41467-018-05696-2 10.1038/s41467-018-05696-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30185791 122]. | #Carnielli CM, Macedo CCS, De Rossi T, Granato DC, Rivera C, Domingues RR, Pauletti BA, Yokoo S, Heberle H, Busso-Lopes AF, Cervigne NK, Sawazaki-Calone I, Meirelles GV, Marchi FA, Telles GP, Minghim R, Ribeiro ACP, Brandão TB, de Castro G Jr, González-Arriagada WA, Gomes A, Penteado F, Santos-Silva AR, Lopes MA, Rodrigues PC, Sundquist E, Salo T, da Silva SD, Alaoui-Jamali MA, Graner E, Fox JW, Coletta RD, Paes Leme AF, (2018) "Combining discovery and targeted proteomics reveals a prognostic signature in oral cancer." <i>Nat Commun</i> <b>9</b>(1):3598; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30185791 30185791]; doi: [https://dx.doi.org/10.1038/s41467-018-05696-2 10.1038/s41467-018-05696-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30185791 122]. | ||
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#Abreha MH, Dammer EB, Ping L, Zhang T, Duong DM, Gearing M, Lah JJ, Levey AI, Seyfried NT, (2018) "Quantitative Analysis of the Brain Ubiquitylome in Alzheimer's Disease." <i>Proteomics</i> <b>18</b>(20):e1800108; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30230243 30230243]; doi: [https://dx.doi.org/10.1002/pmic.201800108 10.1002/pmic.201800108]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30230243 29]. | #Abreha MH, Dammer EB, Ping L, Zhang T, Duong DM, Gearing M, Lah JJ, Levey AI, Seyfried NT, (2018) "Quantitative Analysis of the Brain Ubiquitylome in Alzheimer's Disease." <i>Proteomics</i> <b>18</b>(20):e1800108; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30230243 30230243]; doi: [https://dx.doi.org/10.1002/pmic.201800108 10.1002/pmic.201800108]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30230243 29]. | ||
#Finamore F, Reny JL, Malacarne S, Fontana P, Sanchez JC, (2018) "A high glucose level is associated with decreased aspirin-mediated acetylation of platelet cyclooxygenase (COX)-1 at serine 529: A pilot study." <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30240925 30240925]; doi: [https://dx.doi.org/10.1016/j.jprot.2018.09.007 10.1016/j.jprot.2018.09.007]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30240925 18]. | #Finamore F, Reny JL, Malacarne S, Fontana P, Sanchez JC, (2018) "A high glucose level is associated with decreased aspirin-mediated acetylation of platelet cyclooxygenase (COX)-1 at serine 529: A pilot study." <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30240925 30240925]; doi: [https://dx.doi.org/10.1016/j.jprot.2018.09.007 10.1016/j.jprot.2018.09.007]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30240925 18]. | ||
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#Sun J, Shi J, Wang Y, Chen Y, Li Y, Kong D, Chang L, Liu F, Lv Z, Zhou Y, He F, Zhang Y, Xu P, (2018) "Multiproteases Combined with High-pH Reverse-Phase Separation Strategy Verified Fourteen Missing Proteins in Human Testis Tissue." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30280576 30280576]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00397 10.1021/acs.jproteome.8b00397]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30280576 108]. | #Sun J, Shi J, Wang Y, Chen Y, Li Y, Kong D, Chang L, Liu F, Lv Z, Zhou Y, He F, Zhang Y, Xu P, (2018) "Multiproteases Combined with High-pH Reverse-Phase Separation Strategy Verified Fourteen Missing Proteins in Human Testis Tissue." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30280576 30280576]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00397 10.1021/acs.jproteome.8b00397]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30280576 108]. | ||
#Sepil I, Hopkins BR, Dean R, Thézénas ML, Charles PD, Konietzny R, Fischer R, Kessler B, Wigby S, (2018) "Quantitative proteomics identification of seminal fluid proteins in male <i>Drosophila melanogaster</i>." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30287546 30287546]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000831 10.1074/mcp.RA118.000831]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30287546 87]. | #Sepil I, Hopkins BR, Dean R, Thézénas ML, Charles PD, Konietzny R, Fischer R, Kessler B, Wigby S, (2018) "Quantitative proteomics identification of seminal fluid proteins in male <i>Drosophila melanogaster</i>." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30287546 30287546]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000831 10.1074/mcp.RA118.000831]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30287546 87]. | ||
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#Erdmann J, Preusse M, Khaledi A, Pich A, Häussler S, (2018) "Environment-driven changes of mRNA and protein levels in Pseudomonas aeruginosa." <i>Environ Microbiol</i> <b>20</b>(11):3952–3963; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30346651 30346651]; doi: [https://dx.doi.org/10.1111/1462-2920.14419 10.1111/1462-2920.14419]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30346651 253]. | #Erdmann J, Preusse M, Khaledi A, Pich A, Häussler S, (2018) "Environment-driven changes of mRNA and protein levels in Pseudomonas aeruginosa." <i>Environ Microbiol</i> <b>20</b>(11):3952–3963; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30346651 30346651]; doi: [https://dx.doi.org/10.1111/1462-2920.14419 10.1111/1462-2920.14419]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30346651 253]. | ||
#Krahmer N, Najafi B, Schueder F, Quagliarini F, Steger M, Seitz S, Kasper R, Salinas F, Cox J, Uhlenhaut NH, Walther TC, Jungmann R, Zeigerer A, Borner GHH, Mann M, (2018) "Organellar Proteomics and Phospho-Proteomics Reveal Subcellular Reorganization in Diet-Induced Hepatic Steatosis." <i>Dev Cell</i> <b>47</b>(2):205–221.e7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30352176 30352176]; doi: [https://dx.doi.org/10.1016/j.devcel.2018.09.017 10.1016/j.devcel.2018.09.017]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30352176 134]. | #Krahmer N, Najafi B, Schueder F, Quagliarini F, Steger M, Seitz S, Kasper R, Salinas F, Cox J, Uhlenhaut NH, Walther TC, Jungmann R, Zeigerer A, Borner GHH, Mann M, (2018) "Organellar Proteomics and Phospho-Proteomics Reveal Subcellular Reorganization in Diet-Induced Hepatic Steatosis." <i>Dev Cell</i> <b>47</b>(2):205–221.e7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30352176 30352176]; doi: [https://dx.doi.org/10.1016/j.devcel.2018.09.017 10.1016/j.devcel.2018.09.017]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30352176 134]. | ||
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#Narzt MS, Nagelreiter IM, Oskolkova O, Bochkov VN, Latreille J, Fedorova M, Ni Z, Sialana FJ, Lubec G, Filzwieser M, Laggner M, Bilban M, Mildner M, Tschachler E, Grillari J, Gruber F, (2019) "A novel role for NUPR1 in the keratinocyte stress response to UV oxidized phospholipids." <i>Redox Biol</i> <b>20</b>:467–482; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30466060 30466060]; doi: [https://dx.doi.org/10.1016/j.redox.2018.11.006 10.1016/j.redox.2018.11.006]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30466060 18]. | #Narzt MS, Nagelreiter IM, Oskolkova O, Bochkov VN, Latreille J, Fedorova M, Ni Z, Sialana FJ, Lubec G, Filzwieser M, Laggner M, Bilban M, Mildner M, Tschachler E, Grillari J, Gruber F, (2019) "A novel role for NUPR1 in the keratinocyte stress response to UV oxidized phospholipids." <i>Redox Biol</i> <b>20</b>:467–482; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30466060 30466060]; doi: [https://dx.doi.org/10.1016/j.redox.2018.11.006 10.1016/j.redox.2018.11.006]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30466060 18]. | ||
#Cavanagh JP, Pain M, Askarian F, Bruun JA, Urbarova I, Wai SN, Schmidt F, Johannessen M, (2018) "Comparative exoproteome profiling of an invasive and a commensal Staphylococcus haemolyticus isolate." <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30472255 30472255]; doi: [https://dx.doi.org/10.1016/j.jprot.2018.11.013 10.1016/j.jprot.2018.11.013]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30472255 12]. | #Cavanagh JP, Pain M, Askarian F, Bruun JA, Urbarova I, Wai SN, Schmidt F, Johannessen M, (2018) "Comparative exoproteome profiling of an invasive and a commensal Staphylococcus haemolyticus isolate." <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30472255 30472255]; doi: [https://dx.doi.org/10.1016/j.jprot.2018.11.013 10.1016/j.jprot.2018.11.013]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30472255 12]. | ||
- | #Zhu J, Garrigues L, Van den Toorn H, Stahl B, Heck AJR, (2018) "Discovery and quantification of non-human proteins in human milk." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30489082 30489082]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00550 10.1021/acs.jproteome.8b00550]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30489082 | + | #Zhu J, Garrigues L, Van den Toorn H, Stahl B, Heck AJR, (2018) "Discovery and quantification of non-human proteins in human milk." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30489082 30489082]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00550 10.1021/acs.jproteome.8b00550]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30489082 37]. |
#Back S, Gorman AW, Vogel C, Silva GM, (2018) "Site-specific K63 ubiquitinomics provides insights into translation regulation under stress." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30489083 30489083]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00623 10.1021/acs.jproteome.8b00623]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30489083 20]. | #Back S, Gorman AW, Vogel C, Silva GM, (2018) "Site-specific K63 ubiquitinomics provides insights into translation regulation under stress." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30489083 30489083]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00623 10.1021/acs.jproteome.8b00623]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30489083 20]. | ||
#Novo D, Heath N, Mitchell L, Caligiuri G, MacFarlane A, Reijmer D, Charlton L, Knight J, Calka M, McGhee E, Dornier E, Sumpton D, Mason S, Echard A, Klinkert K, Secklehner J, Kruiswijk F, Vousden K, Macpherson IR, Blyth K, Bailey P, Yin H, Carlin LM, Morton J, Zanivan S, Norman JC, (2018) "Mutant p53s generate pro-invasive niches by influencing exosome podocalyxin levels." <i>Nat Commun</i> <b>9</b>(1):5069; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30498210 30498210]; doi: [https://dx.doi.org/10.1038/s41467-018-07339-y 10.1038/s41467-018-07339-y]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30498210 2]. | #Novo D, Heath N, Mitchell L, Caligiuri G, MacFarlane A, Reijmer D, Charlton L, Knight J, Calka M, McGhee E, Dornier E, Sumpton D, Mason S, Echard A, Klinkert K, Secklehner J, Kruiswijk F, Vousden K, Macpherson IR, Blyth K, Bailey P, Yin H, Carlin LM, Morton J, Zanivan S, Norman JC, (2018) "Mutant p53s generate pro-invasive niches by influencing exosome podocalyxin levels." <i>Nat Commun</i> <b>9</b>(1):5069; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30498210 30498210]; doi: [https://dx.doi.org/10.1038/s41467-018-07339-y 10.1038/s41467-018-07339-y]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30498210 2]. | ||
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#Yelamanchi SD, Tyagi A, Mohanty V, Dutta P, Korbonits M, Chavan S, Advani J, Madugundu AK, Dey G, Datta KK, Rajyalakshmi M, Sahasrabuddhe NA, Chaturvedi A, Kumar A, Das AA, Ghosh D, Jogdand GM, Nair HH, Saini K, Panchal M, Sarvaiya MA, Mohanraj SS, Sengupta N, Saxena P, Subramani PA, Kumar P, Akkali R, Reshma SV, Santhosh RS, Rastogi S, Kumar S, Ghosh SK, Irlapati VK, Srinivasan A, Radotra BD, Mathur PP, Wong GW, Satishchandra P, Chatterjee A, Gowda H, Bhansali A, Pandey A, Shankar SK, Mahadevan A, Prasad TSK, (2018) "Proteomic Analysis of the Human Anterior Pituitary Gland." <i>OMICS</i> <b>22</b>(12):759–769; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30571610 30571610]; doi: [https://dx.doi.org/10.1089/omi.2018.0160 10.1089/omi.2018.0160]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30571610 3]. | #Yelamanchi SD, Tyagi A, Mohanty V, Dutta P, Korbonits M, Chavan S, Advani J, Madugundu AK, Dey G, Datta KK, Rajyalakshmi M, Sahasrabuddhe NA, Chaturvedi A, Kumar A, Das AA, Ghosh D, Jogdand GM, Nair HH, Saini K, Panchal M, Sarvaiya MA, Mohanraj SS, Sengupta N, Saxena P, Subramani PA, Kumar P, Akkali R, Reshma SV, Santhosh RS, Rastogi S, Kumar S, Ghosh SK, Irlapati VK, Srinivasan A, Radotra BD, Mathur PP, Wong GW, Satishchandra P, Chatterjee A, Gowda H, Bhansali A, Pandey A, Shankar SK, Mahadevan A, Prasad TSK, (2018) "Proteomic Analysis of the Human Anterior Pituitary Gland." <i>OMICS</i> <b>22</b>(12):759–769; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30571610 30571610]; doi: [https://dx.doi.org/10.1089/omi.2018.0160 10.1089/omi.2018.0160]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30571610 3]. | ||
#Nanaware PP, Jurewicz MM, Leszyk J, Shaffer SA, Stern LJ, (2018) "HLA-DO modulates the diversity of the MHC-II self-peptidome." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30573663 30573663]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000956 10.1074/mcp.RA118.000956]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30573663 26]. | #Nanaware PP, Jurewicz MM, Leszyk J, Shaffer SA, Stern LJ, (2018) "HLA-DO modulates the diversity of the MHC-II self-peptidome." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30573663 30573663]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000956 10.1074/mcp.RA118.000956]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30573663 26]. | ||
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#Aloui C, Barlier C, Claverol S, Fagan J, Awounou D, Tavernier E, Guyotat D, Hamzeh-Cognasse H, Cognasse F, Garraud O, Laradi S, (2019) "Differential protein expression of blood platelet components associated with adverse transfusion reactions." <i>J Proteomics</i> <b>194</b>:25–36; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30590131 30590131]; doi: [https://dx.doi.org/10.1016/j.jprot.2018.12.019 10.1016/j.jprot.2018.12.019]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30590131 48]. | #Aloui C, Barlier C, Claverol S, Fagan J, Awounou D, Tavernier E, Guyotat D, Hamzeh-Cognasse H, Cognasse F, Garraud O, Laradi S, (2019) "Differential protein expression of blood platelet components associated with adverse transfusion reactions." <i>J Proteomics</i> <b>194</b>:25–36; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30590131 30590131]; doi: [https://dx.doi.org/10.1016/j.jprot.2018.12.019 10.1016/j.jprot.2018.12.019]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30590131 48]. | ||
#Zhou Z, Chen Y, Jin M, He J, Guli A, Yan C, Ding S, (2018) "Comprehensive analysis of lysine acetylome reveals a site-specific pattern in rapamycin-induced autophagy." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30592415 30592415]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00533 10.1021/acs.jproteome.8b00533]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30592415 6]. | #Zhou Z, Chen Y, Jin M, He J, Guli A, Yan C, Ding S, (2018) "Comprehensive analysis of lysine acetylome reveals a site-specific pattern in rapamycin-induced autophagy." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30592415 30592415]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00533 10.1021/acs.jproteome.8b00533]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30592415 6]. | ||
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#Yang H, Li Y, Zhao M, Wu F, Wang X, Xiao W, Wang Y, Zhang J, Wang F, Xu F, Zeng WF, Overall CM, He SM, Chi H, Xu P, (2019) "Precision <i>de novo</i> peptide sequencing using mirror proteases of Ac-LysargiNase and trypsin for large-scale proteomics." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30622160 30622160]; doi: [https://dx.doi.org/10.1074/mcp.TIR118.000918 10.1074/mcp.TIR118.000918]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30622160 2]. | #Yang H, Li Y, Zhao M, Wu F, Wang X, Xiao W, Wang Y, Zhang J, Wang F, Xu F, Zeng WF, Overall CM, He SM, Chi H, Xu P, (2019) "Precision <i>de novo</i> peptide sequencing using mirror proteases of Ac-LysargiNase and trypsin for large-scale proteomics." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30622160 30622160]; doi: [https://dx.doi.org/10.1074/mcp.TIR118.000918 10.1074/mcp.TIR118.000918]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30622160 2]. | ||
#Chen D, Ludwig K, Krokhin OV, Spicer V, Yang Z, Shen X, Hummon AB, Sun L, (2019) "Capillary zone electrophoresis-tandem mass spectrometry for large-scale phosphoproteomics with the production of over 11000 phosphopeptides from the colon carcinoma HCT116 cell line." <i>Anal Chem</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30624053 30624053]; doi: [https://dx.doi.org/10.1021/acs.analchem.8b04770 10.1021/acs.analchem.8b04770]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30624053 40]. | #Chen D, Ludwig K, Krokhin OV, Spicer V, Yang Z, Shen X, Hummon AB, Sun L, (2019) "Capillary zone electrophoresis-tandem mass spectrometry for large-scale phosphoproteomics with the production of over 11000 phosphopeptides from the colon carcinoma HCT116 cell line." <i>Anal Chem</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30624053 30624053]; doi: [https://dx.doi.org/10.1021/acs.analchem.8b04770 10.1021/acs.analchem.8b04770]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30624053 40]. | ||
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#Chen Z, Lei C, Wang C, Li N, Srivastava M, Tang M, Zhang H, Choi JM, Jung SY, Qin J, Chen J, (2019) "Global phosphoproteomic analysis reveals ARMC10 as an AMPK substrate that regulates mitochondrial dynamics." <i>Nat Commun</i> <b>10</b>(1):104; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30631047 30631047]; doi: [https://dx.doi.org/10.1038/s41467-018-08004-0 10.1038/s41467-018-08004-0]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30631047 30]. | #Chen Z, Lei C, Wang C, Li N, Srivastava M, Tang M, Zhang H, Choi JM, Jung SY, Qin J, Chen J, (2019) "Global phosphoproteomic analysis reveals ARMC10 as an AMPK substrate that regulates mitochondrial dynamics." <i>Nat Commun</i> <b>10</b>(1):104; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30631047 30631047]; doi: [https://dx.doi.org/10.1038/s41467-018-08004-0 10.1038/s41467-018-08004-0]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30631047 30]. | ||
#Hansen M, Peltier J, Killy B, Amin B, Bodendorfer B, Härtlova A, Uebel S, Bosmann M, Hofmann J, Büttner C, Ekici AB, Kuttke M, Franzyk H, Foged C, Beer-Hammer S, Schabbauer G, Trost M, Lang R, (2019) "Macrophage phosphoproteome analysis reveals MINCLE-dependent and -independent mycobacterial cord factor signaling." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30635358 30635358]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000929 10.1074/mcp.RA118.000929]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30635358 72]. | #Hansen M, Peltier J, Killy B, Amin B, Bodendorfer B, Härtlova A, Uebel S, Bosmann M, Hofmann J, Büttner C, Ekici AB, Kuttke M, Franzyk H, Foged C, Beer-Hammer S, Schabbauer G, Trost M, Lang R, (2019) "Macrophage phosphoproteome analysis reveals MINCLE-dependent and -independent mycobacterial cord factor signaling." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30635358 30635358]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000929 10.1074/mcp.RA118.000929]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30635358 72]. | ||
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#Hurcombe JA, Hartley P, Lay AC, Ni L, Bedford JJ, Leader JP, Singh S, Murphy A, Scudamore CL, Marquez E, Barrington AF, Pinto V, Marchetti M, Wong LF, Uney J, Saleem MA, Mathieson PW, Patel S, Walker RJ, Woodgett JR, Quaggin SE, Welsh GI, Coward RJM, (2019) "Podocyte GSK3 is an evolutionarily conserved critical regulator of kidney function." <i>Nat Commun</i> <b>10</b>(1):403; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30679422 30679422]; doi: [https://dx.doi.org/10.1038/s41467-018-08235-1 10.1038/s41467-018-08235-1]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30679422 1]. | #Hurcombe JA, Hartley P, Lay AC, Ni L, Bedford JJ, Leader JP, Singh S, Murphy A, Scudamore CL, Marquez E, Barrington AF, Pinto V, Marchetti M, Wong LF, Uney J, Saleem MA, Mathieson PW, Patel S, Walker RJ, Woodgett JR, Quaggin SE, Welsh GI, Coward RJM, (2019) "Podocyte GSK3 is an evolutionarily conserved critical regulator of kidney function." <i>Nat Commun</i> <b>10</b>(1):403; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30679422 30679422]; doi: [https://dx.doi.org/10.1038/s41467-018-08235-1 10.1038/s41467-018-08235-1]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30679422 1]. | ||
#Fornecker LM, Muller L, Bertrand F, Paul N, Pichot A, Herbrecht R, Chenard MP, Mauvieux L, Vallat L, Bahram S, Cianférani S, Carapito R, Carapito C, (2019) "Multi-omics dataset to decipher the complexity of drug resistance in diffuse large B-cell lymphoma." <i>Sci Rep</i> <b>9</b>(1):895; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30696890 30696890]; doi: [https://dx.doi.org/10.1038/s41598-018-37273-4 10.1038/s41598-018-37273-4]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30696890 20]. | #Fornecker LM, Muller L, Bertrand F, Paul N, Pichot A, Herbrecht R, Chenard MP, Mauvieux L, Vallat L, Bahram S, Cianférani S, Carapito R, Carapito C, (2019) "Multi-omics dataset to decipher the complexity of drug resistance in diffuse large B-cell lymphoma." <i>Sci Rep</i> <b>9</b>(1):895; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30696890 30696890]; doi: [https://dx.doi.org/10.1038/s41598-018-37273-4 10.1038/s41598-018-37273-4]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30696890 20]. | ||
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#McKetney J, Runde RM, Hebert AS, Salamat S, Roy S, Coon JJ, (2019) "Proteomic Atlas of the Human Brain in Alzheimer's Disease." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30735395 30735395]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00004 10.1021/acs.jproteome.9b00004]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30735395 22]. | #McKetney J, Runde RM, Hebert AS, Salamat S, Roy S, Coon JJ, (2019) "Proteomic Atlas of the Human Brain in Alzheimer's Disease." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30735395 30735395]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00004 10.1021/acs.jproteome.9b00004]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30735395 22]. | ||
#West KL, Byrum SD, Mackintosh SG, Edmondson RD, Taverna SD, Tackett AJ, (2019) "Proteomic characterization of the arsenic response locus in S. cerevisiae." <i>Epigenetics</i> <b>14</b>(2):130–145; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30739529 30739529]; doi: [https://dx.doi.org/10.1080/15592294.2019.1580110 10.1080/15592294.2019.1580110]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30739529 9]. | #West KL, Byrum SD, Mackintosh SG, Edmondson RD, Taverna SD, Tackett AJ, (2019) "Proteomic characterization of the arsenic response locus in S. cerevisiae." <i>Epigenetics</i> <b>14</b>(2):130–145; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30739529 30739529]; doi: [https://dx.doi.org/10.1080/15592294.2019.1580110 10.1080/15592294.2019.1580110]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30739529 9]. | ||
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#Chu F, Mason KE, Anex DS, Jones AD, Hart BR, (2019) "Hair Proteome Variation at Different Body Locations on Genetically Variant Peptide Detection for Protein-Based Human Identification." <i>Sci Rep</i> <b>9</b>(1):7641; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31113963 31113963]; doi: [https://dx.doi.org/10.1038/s41598-019-44007-7 10.1038/s41598-019-44007-7]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31113963 36]. | #Chu F, Mason KE, Anex DS, Jones AD, Hart BR, (2019) "Hair Proteome Variation at Different Body Locations on Genetically Variant Peptide Detection for Protein-Based Human Identification." <i>Sci Rep</i> <b>9</b>(1):7641; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31113963 31113963]; doi: [https://dx.doi.org/10.1038/s41598-019-44007-7 10.1038/s41598-019-44007-7]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31113963 36]. | ||
#Charitou T, Srihari S, Lynn MA, Jarboui MA, Fasterius E, Moldovan M, Shirasawa S, Tsunoda T, Ueffing M, Xie J, Xin J, Wang X, Proud CG, Boldt K, Al-Khalili Szigyarto C, Kolch W, Lynn DJ, (2019) "Transcriptional and metabolic rewiring of colorectal cancer cells expressing the oncogenic KRAS<sup>G13D</sup> mutation." <i>Br J Cancer</i> <b>121</b>(1):37–50; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31133691 31133691]; doi: [https://dx.doi.org/10.1038/s41416-019-0477-7 10.1038/s41416-019-0477-7]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31133691 523]. | #Charitou T, Srihari S, Lynn MA, Jarboui MA, Fasterius E, Moldovan M, Shirasawa S, Tsunoda T, Ueffing M, Xie J, Xin J, Wang X, Proud CG, Boldt K, Al-Khalili Szigyarto C, Kolch W, Lynn DJ, (2019) "Transcriptional and metabolic rewiring of colorectal cancer cells expressing the oncogenic KRAS<sup>G13D</sup> mutation." <i>Br J Cancer</i> <b>121</b>(1):37–50; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31133691 31133691]; doi: [https://dx.doi.org/10.1038/s41416-019-0477-7 10.1038/s41416-019-0477-7]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31133691 523]. | ||
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#Sap KA, Guler AT, Bezstarosti K, Bury AE, Juenemann K, Demmers J, Reits E, (2019) "Global Proteome and Ubiquitinome Changes in the Soluble and Insoluble Fractions of Q175 Huntington Mice Brains." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31138642 31138642]; doi: [https://dx.doi.org/10.1074/mcp.RA119.001486 10.1074/mcp.RA119.001486]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31138642 64]. | #Sap KA, Guler AT, Bezstarosti K, Bury AE, Juenemann K, Demmers J, Reits E, (2019) "Global Proteome and Ubiquitinome Changes in the Soluble and Insoluble Fractions of Q175 Huntington Mice Brains." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31138642 31138642]; doi: [https://dx.doi.org/10.1074/mcp.RA119.001486 10.1074/mcp.RA119.001486]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31138642 64]. | ||
#Shraibman B, Barnea E, Kadosh DM, Haimovich Y, Slobodin G, Rosner I, López-Larrea C, Hilf N, Kuttruff S, Song C, Britten C, Castle J, Kreiter S, Frenzel K, Tatagiba M, Tabatabai G, Dietrich PY, Dutoit V, Wick W, Platten M, Winkler F, von Deimling A, Kroep J, Sahuquillo J, Martinez-Ricarte F, Rodon J, Lassen U, Ottensmeier C, van der Burg SH, Thor Straten P, Poulsen HS, Ponsati B, Okada H, Rammensee HG, Sahin U, Singh H, Admon A, (2019) "Identification of Tumor Antigens Among the HLA Peptidomes of Glioblastoma Tumors and Plasma." <i>Mol Cell Proteomics</i> <b>18</b>(6):1255–1268; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31154438 31154438]; doi: [https://dx.doi.org/10.1074/mcp.RA119.001524 10.1074/mcp.RA119.001524]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31154438 75]. | #Shraibman B, Barnea E, Kadosh DM, Haimovich Y, Slobodin G, Rosner I, López-Larrea C, Hilf N, Kuttruff S, Song C, Britten C, Castle J, Kreiter S, Frenzel K, Tatagiba M, Tabatabai G, Dietrich PY, Dutoit V, Wick W, Platten M, Winkler F, von Deimling A, Kroep J, Sahuquillo J, Martinez-Ricarte F, Rodon J, Lassen U, Ottensmeier C, van der Burg SH, Thor Straten P, Poulsen HS, Ponsati B, Okada H, Rammensee HG, Sahin U, Singh H, Admon A, (2019) "Identification of Tumor Antigens Among the HLA Peptidomes of Glioblastoma Tumors and Plasma." <i>Mol Cell Proteomics</i> <b>18</b>(6):1255–1268; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31154438 31154438]; doi: [https://dx.doi.org/10.1074/mcp.RA119.001524 10.1074/mcp.RA119.001524]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31154438 75]. | ||
#Pladevall-Morera D, Munk S, Ingham A, Garribba L, Albers E, Liu Y, Olsen JV, Lopez-Contreras AJ, (2019) "Proteomic characterization of chromosomal common fragile site (CFS)-associated proteins uncovers ATRX as a regulator of CFS stability." <i>Nucleic Acids Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31180492 31180492]; doi: [https://dx.doi.org/10.1093/nar/gkz510 10.1093/nar/gkz510]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31180492 32]. | #Pladevall-Morera D, Munk S, Ingham A, Garribba L, Albers E, Liu Y, Olsen JV, Lopez-Contreras AJ, (2019) "Proteomic characterization of chromosomal common fragile site (CFS)-associated proteins uncovers ATRX as a regulator of CFS stability." <i>Nucleic Acids Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31180492 31180492]; doi: [https://dx.doi.org/10.1093/nar/gkz510 10.1093/nar/gkz510]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31180492 32]. | ||
#Wang Y, Tatham MH, Schmidt-Heck W, Swann C, Singh-Dolt K, Meseguer-Ripolles J, Lucendo-Villarin B, Kunath T, Rudd TR, Smith AJH, Hengstler JG, Godoy P, Hay RT, Hay DC, (2019) "Multiomics Analyses of HNF4α Protein Domain Function during Human Pluripotent Stem Cell Differentiation." <i>iScience</i> <b>16</b>:206–217; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31185456 31185456]; doi: [https://dx.doi.org/10.1016/j.isci.2019.05.028 10.1016/j.isci.2019.05.028]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31185456 96]. | #Wang Y, Tatham MH, Schmidt-Heck W, Swann C, Singh-Dolt K, Meseguer-Ripolles J, Lucendo-Villarin B, Kunath T, Rudd TR, Smith AJH, Hengstler JG, Godoy P, Hay RT, Hay DC, (2019) "Multiomics Analyses of HNF4α Protein Domain Function during Human Pluripotent Stem Cell Differentiation." <i>iScience</i> <b>16</b>:206–217; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31185456 31185456]; doi: [https://dx.doi.org/10.1016/j.isci.2019.05.028 10.1016/j.isci.2019.05.028]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31185456 96]. | ||
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#Ma F, Tremmel DM, Li Z, Lietz CB, Sackett SD, Odorico JS, Li L, (2019) "In-depth quantification of extracellular matrix proteins from human pancreas." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31200599 31200599]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00241 10.1021/acs.jproteome.9b00241]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31200599 30]. | #Ma F, Tremmel DM, Li Z, Lietz CB, Sackett SD, Odorico JS, Li L, (2019) "In-depth quantification of extracellular matrix proteins from human pancreas." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31200599 31200599]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00241 10.1021/acs.jproteome.9b00241]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31200599 30]. | ||
#Mendonça CF, Kuras M, Nogueira FCS, Plá I, Hortobágyi T, Csiba L, Palkovits M, Renner É, Döme P, Marko-Varga G, Domont GB, Rezeli M, (2019) "Proteomic signatures of brain regions affected by tau pathology in early and late stages of Alzheimer's disease." <i>Neurobiol Dis</i> <b>130</b>:104509; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31207390 31207390]; doi: [https://dx.doi.org/10.1016/j.nbd.2019.104509 10.1016/j.nbd.2019.104509]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31207390 367]. | #Mendonça CF, Kuras M, Nogueira FCS, Plá I, Hortobágyi T, Csiba L, Palkovits M, Renner É, Döme P, Marko-Varga G, Domont GB, Rezeli M, (2019) "Proteomic signatures of brain regions affected by tau pathology in early and late stages of Alzheimer's disease." <i>Neurobiol Dis</i> <b>130</b>:104509; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31207390 31207390]; doi: [https://dx.doi.org/10.1016/j.nbd.2019.104509 10.1016/j.nbd.2019.104509]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31207390 367]. | ||
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#Patil S, Rajagopalan P, Patel K, Subbannayya T, Babu N, Mohan SV, Advani J, Sathe G, Bhandi S, Solanki HS, Sidransky D, Chatterjee A, Gowda H, Ferrari M, (2019) "Chronic shisha exposure alters phosphoproteome of oral keratinocytes." <i>J Cell Commun Signal</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31321732 31321732]; doi: [https://dx.doi.org/10.1007/s12079-019-00528-4 10.1007/s12079-019-00528-4]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31321732 6]. | #Patil S, Rajagopalan P, Patel K, Subbannayya T, Babu N, Mohan SV, Advani J, Sathe G, Bhandi S, Solanki HS, Sidransky D, Chatterjee A, Gowda H, Ferrari M, (2019) "Chronic shisha exposure alters phosphoproteome of oral keratinocytes." <i>J Cell Commun Signal</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31321732 31321732]; doi: [https://dx.doi.org/10.1007/s12079-019-00528-4 10.1007/s12079-019-00528-4]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31321732 6]. | ||
#Buser DP, Ritz MF, Moes S, Tostado C, Frank S, Spiess M, Mariani L, Jenö P, Boulay JL, Hutter G, (2019) "Quantitative proteomics reveals reduction of endocytic machinery components in gliomas." <i>EBioMedicine</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31331834 31331834]; doi: [https://dx.doi.org/10.1016/j.ebiom.2019.07.039 10.1016/j.ebiom.2019.07.039]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31331834 51]. | #Buser DP, Ritz MF, Moes S, Tostado C, Frank S, Spiess M, Mariani L, Jenö P, Boulay JL, Hutter G, (2019) "Quantitative proteomics reveals reduction of endocytic machinery components in gliomas." <i>EBioMedicine</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31331834 31331834]; doi: [https://dx.doi.org/10.1016/j.ebiom.2019.07.039 10.1016/j.ebiom.2019.07.039]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31331834 51]. | ||
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#Hollin T, De Witte C, Fréville A, Guerrera IC, Chhuon C, Saliou JM, Herbert F, Pierrot C, Khalife J, (2019) "Essential role of GEXP15, a specific Protein Phosphatase type 1 partner, in Plasmodium berghei in asexual erythrocytic proliferation and transmission." <i>PLoS Pathog</i> <b>15</b>(7):e1007973; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31348803 31348803]; doi: [https://dx.doi.org/10.1371/journal.ppat.1007973 10.1371/journal.ppat.1007973]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31348803 58]. | #Hollin T, De Witte C, Fréville A, Guerrera IC, Chhuon C, Saliou JM, Herbert F, Pierrot C, Khalife J, (2019) "Essential role of GEXP15, a specific Protein Phosphatase type 1 partner, in Plasmodium berghei in asexual erythrocytic proliferation and transmission." <i>PLoS Pathog</i> <b>15</b>(7):e1007973; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31348803 31348803]; doi: [https://dx.doi.org/10.1371/journal.ppat.1007973 10.1371/journal.ppat.1007973]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31348803 58]. | ||
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#Hillier C, Pardo M, Yu L, Bushell E, Sanderson T, Metcalf T, Herd C, Anar B, Rayner JC, Billker O, Choudhary JS, (2019) "Landscape of the Plasmodium Interactome Reveals Both Conserved and Species-Specific Functionality." <i>Cell Rep</i> <b>28</b>(6):1635–1647.e5; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31390575 31390575]; doi: [https://dx.doi.org/10.1016/j.celrep.2019.07.019 10.1016/j.celrep.2019.07.019]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31390575 723]. | #Hillier C, Pardo M, Yu L, Bushell E, Sanderson T, Metcalf T, Herd C, Anar B, Rayner JC, Billker O, Choudhary JS, (2019) "Landscape of the Plasmodium Interactome Reveals Both Conserved and Species-Specific Functionality." <i>Cell Rep</i> <b>28</b>(6):1635–1647.e5; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31390575 31390575]; doi: [https://dx.doi.org/10.1016/j.celrep.2019.07.019 10.1016/j.celrep.2019.07.019]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31390575 723]. | ||
#Stewart PA, Welsh EA, Slebos RJC, Fang B, Izumi V, Chambers M, Zhang G, Cen L, Pettersson F, Zhang Y, Chen Z, Cheng CH, Thapa R, Thompson Z, Fellows KM, Francis JM, Saller JJ, Mesa T, Zhang C, Yoder S, DeNicola GM, Beg AA, Boyle TA, Teer JK, Ann Chen Y, Koomen JM, Eschrich SA, Haura EB, (2019) "Proteogenomic landscape of squamous cell lung cancer." <i>Nat Commun</i> <b>10</b>(1):3578; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31395880 31395880]; doi: [https://dx.doi.org/10.1038/s41467-019-11452-x 10.1038/s41467-019-11452-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31395880 58]. | #Stewart PA, Welsh EA, Slebos RJC, Fang B, Izumi V, Chambers M, Zhang G, Cen L, Pettersson F, Zhang Y, Chen Z, Cheng CH, Thapa R, Thompson Z, Fellows KM, Francis JM, Saller JJ, Mesa T, Zhang C, Yoder S, DeNicola GM, Beg AA, Boyle TA, Teer JK, Ann Chen Y, Koomen JM, Eschrich SA, Haura EB, (2019) "Proteogenomic landscape of squamous cell lung cancer." <i>Nat Commun</i> <b>10</b>(1):3578; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31395880 31395880]; doi: [https://dx.doi.org/10.1038/s41467-019-11452-x 10.1038/s41467-019-11452-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31395880 58]. | ||
#Olson MG, Widner RE, Jorgenson LM, Lawrence A, Lagundzin D, Woods NT, Ouellette SP, Rucks EA, (2019) "Proximity Labeling To Map Host-Pathogen Interactions at the Membrane of a Bacterium-Containing Vacuole in Chlamydia trachomatis-Infected Human Cells." <i>Infect Immun</i> <b>87</b>(11):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31405957 31405957]; doi: [https://dx.doi.org/10.1128/IAI.00537-19 10.1128/IAI.00537-19]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31405957 314]. | #Olson MG, Widner RE, Jorgenson LM, Lawrence A, Lagundzin D, Woods NT, Ouellette SP, Rucks EA, (2019) "Proximity Labeling To Map Host-Pathogen Interactions at the Membrane of a Bacterium-Containing Vacuole in Chlamydia trachomatis-Infected Human Cells." <i>Infect Immun</i> <b>87</b>(11):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31405957 31405957]; doi: [https://dx.doi.org/10.1128/IAI.00537-19 10.1128/IAI.00537-19]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31405957 314]. | ||
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#Brophy RH, Cai L, Duan X, Zhang Q, Townsend RR, Nunley RM, Guilak F, Rai MF, (2019) "Proteomic analysis of synovial fluid identifies periostin as a biomarker for anterior cruciate ligament injury." <i>Osteoarthritis Cartilage</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31430535 31430535]; doi: [https://dx.doi.org/10.1016/j.joca.2019.08.002 10.1016/j.joca.2019.08.002]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31430535 11]. | #Brophy RH, Cai L, Duan X, Zhang Q, Townsend RR, Nunley RM, Guilak F, Rai MF, (2019) "Proteomic analysis of synovial fluid identifies periostin as a biomarker for anterior cruciate ligament injury." <i>Osteoarthritis Cartilage</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31430535 31430535]; doi: [https://dx.doi.org/10.1016/j.joca.2019.08.002 10.1016/j.joca.2019.08.002]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31430535 11]. | ||
#Ong JWJ, Tan KS, Ler SG, Gunaratne J, Choi H, Seet JE, Chow VT, (2019) "Insights into Early Recovery from Influenza Pneumonia by Spatial and Temporal Quantification of Putative Lung Regenerating Cells and by Lung Proteomics." <i>Cells</i> <b>8</b>(9):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31455003 31455003]; doi: [https://dx.doi.org/10.3390/cells8090975 10.3390/cells8090975]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31455003 1]. | #Ong JWJ, Tan KS, Ler SG, Gunaratne J, Choi H, Seet JE, Chow VT, (2019) "Insights into Early Recovery from Influenza Pneumonia by Spatial and Temporal Quantification of Putative Lung Regenerating Cells and by Lung Proteomics." <i>Cells</i> <b>8</b>(9):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31455003 31455003]; doi: [https://dx.doi.org/10.3390/cells8090975 10.3390/cells8090975]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31455003 1]. | ||
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#Al Ahmad A, Paffrath V, Clima R, Busch JF, Rabien A, Kilic E, Villegas S, Timmermann B, Attimonelli M, Jung K, Meierhofer D, (2019) "Papillary Renal Cell Carcinomas Rewire Glutathione Metabolism and Are Deficient in Both Anabolic Glucose Synthesis and Oxidative Phosphorylation." <i>Cancers (Basel)</i> <b>11</b>(9):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31484429 31484429]; doi: [https://dx.doi.org/10.3390/cancers11091298 10.3390/cancers11091298]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31484429 33]. | #Al Ahmad A, Paffrath V, Clima R, Busch JF, Rabien A, Kilic E, Villegas S, Timmermann B, Attimonelli M, Jung K, Meierhofer D, (2019) "Papillary Renal Cell Carcinomas Rewire Glutathione Metabolism and Are Deficient in Both Anabolic Glucose Synthesis and Oxidative Phosphorylation." <i>Cancers (Basel)</i> <b>11</b>(9):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31484429 31484429]; doi: [https://dx.doi.org/10.3390/cancers11091298 10.3390/cancers11091298]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31484429 33]. | ||
#Liebelt F, Jansen NS, Kumar S, Gracheva E, Claessens LA, Verlaan-de Vries M, Willemstein E, Vertegaal ACO, (2019) "The poly-SUMO2/3 protease SENP6 enables assembly of the constitutive centromere-associated network by group deSUMOylation." <i>Nat Commun</i> <b>10</b>(1):3987; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31485003 31485003]; doi: [https://dx.doi.org/10.1038/s41467-019-11773-x 10.1038/s41467-019-11773-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31485003 46]. | #Liebelt F, Jansen NS, Kumar S, Gracheva E, Claessens LA, Verlaan-de Vries M, Willemstein E, Vertegaal ACO, (2019) "The poly-SUMO2/3 protease SENP6 enables assembly of the constitutive centromere-associated network by group deSUMOylation." <i>Nat Commun</i> <b>10</b>(1):3987; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31485003 31485003]; doi: [https://dx.doi.org/10.1038/s41467-019-11773-x 10.1038/s41467-019-11773-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31485003 46]. | ||
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#Sleat DE, Wiseman JA, El-Banna M, Zheng H, Zhao C, Soherwardy A, Moore DF, Lobel P, (2019) "Analysis of brain and cerebrospinal fluid from mouse models of the three major forms of neuronal ceroid lipofuscinosis reveals changes in the lysosomal proteome." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31501224 31501224]; doi: [https://dx.doi.org/10.1074/mcp.RA119.001587 10.1074/mcp.RA119.001587]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31501224 132]. | #Sleat DE, Wiseman JA, El-Banna M, Zheng H, Zhao C, Soherwardy A, Moore DF, Lobel P, (2019) "Analysis of brain and cerebrospinal fluid from mouse models of the three major forms of neuronal ceroid lipofuscinosis reveals changes in the lysosomal proteome." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31501224 31501224]; doi: [https://dx.doi.org/10.1074/mcp.RA119.001587 10.1074/mcp.RA119.001587]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31501224 132]. | ||
#Wilson R, Gundamaraju R, Vemuri R, Angelucci C, Geraghty D, Gueven N, Eri RD, (2019) "Identification of Key Pro-Survival Proteins in Isolated Colonic Goblet Cells of Winnie, a Murine Model of Spontaneous Colitis." <i>Inflamm Bowel Dis</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31504521 31504521]; doi: [https://dx.doi.org/10.1093/ibd/izz179 10.1093/ibd/izz179]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31504521 6]. | #Wilson R, Gundamaraju R, Vemuri R, Angelucci C, Geraghty D, Gueven N, Eri RD, (2019) "Identification of Key Pro-Survival Proteins in Isolated Colonic Goblet Cells of Winnie, a Murine Model of Spontaneous Colitis." <i>Inflamm Bowel Dis</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31504521 31504521]; doi: [https://dx.doi.org/10.1093/ibd/izz179 10.1093/ibd/izz179]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31504521 6]. | ||
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#Lim MY, Paulo JA, Gygi SP, (2019) "Evaluating False Transfer Rates from the Match-between-Runs Algorithm with a Two-Proteome Model." <i>J Proteome Res</i> <b>18</b>(11):4020–4026; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31547658 31547658]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00492 10.1021/acs.jproteome.9b00492]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31547658 40]. | #Lim MY, Paulo JA, Gygi SP, (2019) "Evaluating False Transfer Rates from the Match-between-Runs Algorithm with a Two-Proteome Model." <i>J Proteome Res</i> <b>18</b>(11):4020–4026; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31547658 31547658]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00492 10.1021/acs.jproteome.9b00492]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31547658 40]. | ||
#Uckeley ZM, Moeller R, Kühn LI, Nilsson E, Robens C, Lasswitz L, Lindqvist R, Lenman A, Passos V, Voss Y, Sommerauer C, Kampmann M, Goffinet C, Meissner F, Överby AK, Lozach PY, Gerold G, (2019) "Quantitative proteomics of Uukuniemi virus - host cell interactions reveals GBF1 as proviral host factor for phleboviruses." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31570497 31570497]; doi: [https://dx.doi.org/10.1074/mcp.RA119.001631 10.1074/mcp.RA119.001631]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31570497 20]. | #Uckeley ZM, Moeller R, Kühn LI, Nilsson E, Robens C, Lasswitz L, Lindqvist R, Lenman A, Passos V, Voss Y, Sommerauer C, Kampmann M, Goffinet C, Meissner F, Överby AK, Lozach PY, Gerold G, (2019) "Quantitative proteomics of Uukuniemi virus - host cell interactions reveals GBF1 as proviral host factor for phleboviruses." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31570497 31570497]; doi: [https://dx.doi.org/10.1074/mcp.RA119.001631 10.1074/mcp.RA119.001631]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31570497 20]. | ||
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#Kawahara R, Recuero S, Nogueira FCS, Domont GB, Leite KRM, Srougi M, Thaysen-Andersen M, Palmisano G, (2019) "Tissue Proteome Signatures Associated with Five Grades of Prostate Cancer and Benign Prostatic Hyperplasia." <i>Proteomics</i> <b></b>:e1900174; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31576646 31576646]; doi: [https://dx.doi.org/10.1002/pmic.201900174 10.1002/pmic.201900174]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31576646 5]. | #Kawahara R, Recuero S, Nogueira FCS, Domont GB, Leite KRM, Srougi M, Thaysen-Andersen M, Palmisano G, (2019) "Tissue Proteome Signatures Associated with Five Grades of Prostate Cancer and Benign Prostatic Hyperplasia." <i>Proteomics</i> <b></b>:e1900174; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31576646 31576646]; doi: [https://dx.doi.org/10.1002/pmic.201900174 10.1002/pmic.201900174]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31576646 5]. | ||
#Baers LL, Breckels LM, Mills LA, Gatto L, Deery M, Stevens TJ, Howe CJ, Lilley KS, Lea-Smith DJ, (2019) "Proteome mapping of a cyanobacterium reveals distinct compartment organisation and cell-dispersed metabolism." <i>Plant Physiol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31578229 31578229]; doi: [https://dx.doi.org/10.1104/pp.19.00897 10.1104/pp.19.00897]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31578229 39]. | #Baers LL, Breckels LM, Mills LA, Gatto L, Deery M, Stevens TJ, Howe CJ, Lilley KS, Lea-Smith DJ, (2019) "Proteome mapping of a cyanobacterium reveals distinct compartment organisation and cell-dispersed metabolism." <i>Plant Physiol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31578229 31578229]; doi: [https://dx.doi.org/10.1104/pp.19.00897 10.1104/pp.19.00897]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31578229 39]. | ||
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#Deshmukh AS, Peijs L, Beaudry JL, Jespersen NZ, Nielsen CH, Ma T, Brunner AD, Larsen TJ, Bayarri-Olmos R, Prabhakar BS, Helgstrand C, Severinsen MCK, Holst B, Kjaer A, Tang-Christensen M, Sanfridson A, Garred P, Privé GG, Pedersen BK, Gerhart-Hines Z, Nielsen S, Drucker DJ, Mann M, Scheele C, (2019) "Proteomics-Based Comparative Mapping of the Secretomes of Human Brown and White Adipocytes Reveals EPDR1 as a Novel Batokine." <i>Cell Metab</i> <b>30</b>(5):963–975.e7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31668873 31668873]; doi: [https://dx.doi.org/10.1016/j.cmet.2019.10.001 10.1016/j.cmet.2019.10.001]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31668873 28]. | #Deshmukh AS, Peijs L, Beaudry JL, Jespersen NZ, Nielsen CH, Ma T, Brunner AD, Larsen TJ, Bayarri-Olmos R, Prabhakar BS, Helgstrand C, Severinsen MCK, Holst B, Kjaer A, Tang-Christensen M, Sanfridson A, Garred P, Privé GG, Pedersen BK, Gerhart-Hines Z, Nielsen S, Drucker DJ, Mann M, Scheele C, (2019) "Proteomics-Based Comparative Mapping of the Secretomes of Human Brown and White Adipocytes Reveals EPDR1 as a Novel Batokine." <i>Cell Metab</i> <b>30</b>(5):963–975.e7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31668873 31668873]; doi: [https://dx.doi.org/10.1016/j.cmet.2019.10.001 10.1016/j.cmet.2019.10.001]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31668873 28]. | ||
#Alvarez Hayes J, Surmann K, Lamberti Y, Depke M, Dhople V, Blancá B, Ruiz E, Vecerek B, Schmidt F, Völker U, Rodriguez ME, (2020) "Hfq modulates global protein pattern and stress response in Bordetella pertussis." <i>J Proteomics</i> <b>211</b>:103559; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31669358 31669358]; doi: [https://dx.doi.org/10.1016/j.jprot.2019.103559 10.1016/j.jprot.2019.103559]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31669358 16]. | #Alvarez Hayes J, Surmann K, Lamberti Y, Depke M, Dhople V, Blancá B, Ruiz E, Vecerek B, Schmidt F, Völker U, Rodriguez ME, (2020) "Hfq modulates global protein pattern and stress response in Bordetella pertussis." <i>J Proteomics</i> <b>211</b>:103559; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31669358 31669358]; doi: [https://dx.doi.org/10.1016/j.jprot.2019.103559 10.1016/j.jprot.2019.103559]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31669358 16]. | ||
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#Sohier P, Sanson R, Leduc M, Audebourg A, Broussard C, Salnot V, Just PA, Pasmant E, Mayeux P, Guillonneau F, Romagnolo B, Perret C, Terris B, (2019) "Proteome analysis of formalin-fixed paraffin-embedded colorectal adenomas reveals the heterogeneous nature of traditional serrated adenomas compared to other colorectal adenomas." <i>J Pathol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31729028 31729028]; doi: [https://dx.doi.org/10.1002/path.5366 10.1002/path.5366]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31729028 61]. | #Sohier P, Sanson R, Leduc M, Audebourg A, Broussard C, Salnot V, Just PA, Pasmant E, Mayeux P, Guillonneau F, Romagnolo B, Perret C, Terris B, (2019) "Proteome analysis of formalin-fixed paraffin-embedded colorectal adenomas reveals the heterogeneous nature of traditional serrated adenomas compared to other colorectal adenomas." <i>J Pathol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31729028 31729028]; doi: [https://dx.doi.org/10.1002/path.5366 10.1002/path.5366]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31729028 61]. | ||
#Newey A, Griffiths B, Michaux J, Pak HS, Stevenson BJ, Woolston A, Semiannikova M, Spain G, Barber LJ, Matthews N, Rao S, Watkins D, Chau I, Coukos G, Racle J, Gfeller D, Starling N, Cunningham D, Bassani-Sternberg M, Gerlinger M, (2019) "Immunopeptidomics of colorectal cancer organoids reveals a sparse HLA class I neoantigen landscape and no increase in neoantigens with interferon or MEK-inhibitor treatment." <i>J Immunother Cancer</i> <b>7</b>(1):309; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31735170 31735170]; doi: [https://dx.doi.org/10.1186/s40425-019-0769-8 10.1186/s40425-019-0769-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31735170 193]. | #Newey A, Griffiths B, Michaux J, Pak HS, Stevenson BJ, Woolston A, Semiannikova M, Spain G, Barber LJ, Matthews N, Rao S, Watkins D, Chau I, Coukos G, Racle J, Gfeller D, Starling N, Cunningham D, Bassani-Sternberg M, Gerlinger M, (2019) "Immunopeptidomics of colorectal cancer organoids reveals a sparse HLA class I neoantigen landscape and no increase in neoantigens with interferon or MEK-inhibitor treatment." <i>J Immunother Cancer</i> <b>7</b>(1):309; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31735170 31735170]; doi: [https://dx.doi.org/10.1186/s40425-019-0769-8 10.1186/s40425-019-0769-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31735170 193]. | ||
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#Zhang Y, Lin Z, Tan Y, Bu F, Hao P, Zhang K, Yang H, Liu S, Ren Y, (2019) "Exploration of Missing Proteins by a Combination Approach to Enrich the Low-Abundance Hydrophobic Proteins from Four Cancer Cell Lines." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31773964 31773964]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00590 10.1021/acs.jproteome.9b00590]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31773964 16]. | #Zhang Y, Lin Z, Tan Y, Bu F, Hao P, Zhang K, Yang H, Liu S, Ren Y, (2019) "Exploration of Missing Proteins by a Combination Approach to Enrich the Low-Abundance Hydrophobic Proteins from Four Cancer Cell Lines." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31773964 31773964]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00590 10.1021/acs.jproteome.9b00590]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31773964 16]. | ||
#Löffler MW, Nussbaum B, Jäger G, Jurmeister PS, Budczies J, Pereira PL, Clasen S, Kowalewski DJ, Mühlenbruch L, Königsrainer I, Beckert S, Ladurner R, Wagner S, Bullinger F, Gross TH, Schroeder C, Sipos B, Königsrainer A, Stevanović S, Denkert C, Rammensee HG, Gouttefangeas C, Haen SP, (2019) "A Non-interventional Clinical Trial Assessing Immune Responses After Radiofrequency Ablation of Liver Metastases From Colorectal Cancer." <i>Front Immunol</i> <b>10</b>:2526; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31803175 31803175]; doi: [https://dx.doi.org/10.3389/fimmu.2019.02526 10.3389/fimmu.2019.02526]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31803175 76]. | #Löffler MW, Nussbaum B, Jäger G, Jurmeister PS, Budczies J, Pereira PL, Clasen S, Kowalewski DJ, Mühlenbruch L, Königsrainer I, Beckert S, Ladurner R, Wagner S, Bullinger F, Gross TH, Schroeder C, Sipos B, Königsrainer A, Stevanović S, Denkert C, Rammensee HG, Gouttefangeas C, Haen SP, (2019) "A Non-interventional Clinical Trial Assessing Immune Responses After Radiofrequency Ablation of Liver Metastases From Colorectal Cancer." <i>Front Immunol</i> <b>10</b>:2526; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31803175 31803175]; doi: [https://dx.doi.org/10.3389/fimmu.2019.02526 10.3389/fimmu.2019.02526]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31803175 76]. | ||
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#Szibor M, Gainutdinov T, Fernandez-Vizarra E, Dufour E, Gizatullina Z, Debska-Vielhaber G, Heidler J, Wittig I, Viscomi C, Gellerich F, Moore AL, (2020) "Bioenergetic consequences from xenotopic expression of a tunicate AOX in mouse mitochondria: Switch from RET and ROS to FET." <i>Biochim Biophys Acta Bioenerg</i> <b>1861</b>(2):148137; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31825809 31825809]; doi: [https://dx.doi.org/10.1016/j.bbabio.2019.148137 10.1016/j.bbabio.2019.148137]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31825809 96]. | #Szibor M, Gainutdinov T, Fernandez-Vizarra E, Dufour E, Gizatullina Z, Debska-Vielhaber G, Heidler J, Wittig I, Viscomi C, Gellerich F, Moore AL, (2020) "Bioenergetic consequences from xenotopic expression of a tunicate AOX in mouse mitochondria: Switch from RET and ROS to FET." <i>Biochim Biophys Acta Bioenerg</i> <b>1861</b>(2):148137; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31825809 31825809]; doi: [https://dx.doi.org/10.1016/j.bbabio.2019.148137 10.1016/j.bbabio.2019.148137]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31825809 96]. | ||
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#Solleder M, Guillaume P, Racle J, Michaux J, Pak HS, Müller M, Coukos G, Bassani-Sternberg M, Gfeller D, (2019) "Mass spectrometry based immunopeptidomics leads to robust predictions of phosphorylated HLA class I ligands." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31848261 31848261]; doi: [https://dx.doi.org/10.1074/mcp.TIR119.001641 10.1074/mcp.TIR119.001641]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31848261 208]. | #Solleder M, Guillaume P, Racle J, Michaux J, Pak HS, Müller M, Coukos G, Bassani-Sternberg M, Gfeller D, (2019) "Mass spectrometry based immunopeptidomics leads to robust predictions of phosphorylated HLA class I ligands." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31848261 31848261]; doi: [https://dx.doi.org/10.1074/mcp.TIR119.001641 10.1074/mcp.TIR119.001641]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31848261 208]. | ||
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#Nobre LV, Nightingale K, Ravenhill BJ, Antrobus R, Soday L, Nichols J, Davies JA, Seirafian S, Wang EC, Davison AJ, Wilkinson GW, Stanton RJ, Huttlin EL, Weekes MP, (2019) "Human cytomegalovirus interactome analysis identifies degradation hubs, domain associations and viral protein functions." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31873071 31873071]; doi: [https://dx.doi.org/10.7554/eLife.49894 10.7554/eLife.49894]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31873071 354]. | #Nobre LV, Nightingale K, Ravenhill BJ, Antrobus R, Soday L, Nichols J, Davies JA, Seirafian S, Wang EC, Davison AJ, Wilkinson GW, Stanton RJ, Huttlin EL, Weekes MP, (2019) "Human cytomegalovirus interactome analysis identifies degradation hubs, domain associations and viral protein functions." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31873071 31873071]; doi: [https://dx.doi.org/10.7554/eLife.49894 10.7554/eLife.49894]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31873071 354]. | ||
#Mühlhofer M, Berchtold E, Stratil CG, Csaba G, Kunold E, Bach NC, Sieber SA, Haslbeck M, Zimmer R, Buchner J, (2019) "The Heat Shock Response in Yeast Maintains Protein Homeostasis by Chaperoning and Replenishing Proteins." <i>Cell Rep</i> <b>29</b>(13):4593–4607.e8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31875563 31875563]; doi: [https://dx.doi.org/10.1016/j.celrep.2019.11.109 10.1016/j.celrep.2019.11.109]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31875563 15]. | #Mühlhofer M, Berchtold E, Stratil CG, Csaba G, Kunold E, Bach NC, Sieber SA, Haslbeck M, Zimmer R, Buchner J, (2019) "The Heat Shock Response in Yeast Maintains Protein Homeostasis by Chaperoning and Replenishing Proteins." <i>Cell Rep</i> <b>29</b>(13):4593–4607.e8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31875563 31875563]; doi: [https://dx.doi.org/10.1016/j.celrep.2019.11.109 10.1016/j.celrep.2019.11.109]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31875563 15]. | ||
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#Mugahid DA, Sengul TG, You X, Wang Y, Steil L, Bergmann N, Radke MH, Ofenbauer A, Gesell-Salazar M, Balogh A, Kempa S, Tursun B, Robbins CT, Völker U, Chen W, Nelson L, Gotthardt M, (2019) "Proteomic and Transcriptomic Changes in Hibernating Grizzly Bears Reveal Metabolic and Signaling Pathways that Protect against Muscle Atrophy." <i>Sci Rep</i> <b>9</b>(1):19976; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31882638 31882638]; doi: [https://dx.doi.org/10.1038/s41598-019-56007-8 10.1038/s41598-019-56007-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31882638 16]. | #Mugahid DA, Sengul TG, You X, Wang Y, Steil L, Bergmann N, Radke MH, Ofenbauer A, Gesell-Salazar M, Balogh A, Kempa S, Tursun B, Robbins CT, Völker U, Chen W, Nelson L, Gotthardt M, (2019) "Proteomic and Transcriptomic Changes in Hibernating Grizzly Bears Reveal Metabolic and Signaling Pathways that Protect against Muscle Atrophy." <i>Sci Rep</i> <b>9</b>(1):19976; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31882638 31882638]; doi: [https://dx.doi.org/10.1038/s41598-019-56007-8 10.1038/s41598-019-56007-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31882638 16]. | ||
#Rispoli LA, Edwards JL, Pohler KG, Russell S, Somiari RI, Payton RR, Schrick FN, (2019) "Heat-induced hyperthermia impacts the follicular fluid proteome of the periovulatory follicle in lactating dairy cows." <i>PLoS One</i> <b>14</b>(12):e0227095; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31887207 31887207]; doi: [https://dx.doi.org/10.1371/journal.pone.0227095 10.1371/journal.pone.0227095]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31887207 5]. | #Rispoli LA, Edwards JL, Pohler KG, Russell S, Somiari RI, Payton RR, Schrick FN, (2019) "Heat-induced hyperthermia impacts the follicular fluid proteome of the periovulatory follicle in lactating dairy cows." <i>PLoS One</i> <b>14</b>(12):e0227095; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31887207 31887207]; doi: [https://dx.doi.org/10.1371/journal.pone.0227095 10.1371/journal.pone.0227095]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31887207 5]. | ||
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#Róka B, Tod P, Kaucsár T, Vizovišek M, Vidmar R, Turk B, Fonović M, Szénási G, Hamar P, (2019) "The Acute Phase Response Is a Prominent Renal Proteome Change in Sepsis in Mice." <i>Int J Mol Sci</i> <b>21</b>(1):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31892161 31892161]; doi: [https://dx.doi.org/10.3390/ijms21010200 10.3390/ijms21010200]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31892161 120]. | #Róka B, Tod P, Kaucsár T, Vizovišek M, Vidmar R, Turk B, Fonović M, Szénási G, Hamar P, (2019) "The Acute Phase Response Is a Prominent Renal Proteome Change in Sepsis in Mice." <i>Int J Mol Sci</i> <b>21</b>(1):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31892161 31892161]; doi: [https://dx.doi.org/10.3390/ijms21010200 10.3390/ijms21010200]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31892161 120]. | ||
#Isobe K, Raghuram V, Krishnan L, Chou CL, Yang CR, Knepper MA, (2020) "CRISPR-Cas9/phosphoproteomics identifies multiple noncanonical targets of myosin light chain kinase." <i>Am J Physiol Renal Physiol</i> <b>318</b>(3):F600–F616; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31904282 31904282]; doi: [https://dx.doi.org/10.1152/ajprenal.00431.2019 10.1152/ajprenal.00431.2019]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31904282 75]. | #Isobe K, Raghuram V, Krishnan L, Chou CL, Yang CR, Knepper MA, (2020) "CRISPR-Cas9/phosphoproteomics identifies multiple noncanonical targets of myosin light chain kinase." <i>Am J Physiol Renal Physiol</i> <b>318</b>(3):F600–F616; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31904282 31904282]; doi: [https://dx.doi.org/10.1152/ajprenal.00431.2019 10.1152/ajprenal.00431.2019]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31904282 75]. | ||
#Hose J, Escalante LE, Clowers KJ, Dutcher HA, Robinson D, Bouriakov V, Coon JJ, Shishkova E, Gasch AP, (2020) "The genetic basis of aneuploidy tolerance in wild yeast." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31909711 31909711]; doi: [https://dx.doi.org/10.7554/eLife.52063 10.7554/eLife.52063]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31909711 24]. | #Hose J, Escalante LE, Clowers KJ, Dutcher HA, Robinson D, Bouriakov V, Coon JJ, Shishkova E, Gasch AP, (2020) "The genetic basis of aneuploidy tolerance in wild yeast." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31909711 31909711]; doi: [https://dx.doi.org/10.7554/eLife.52063 10.7554/eLife.52063]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31909711 24]. | ||
#Bian Y, Zheng R, Bayer FP, Wong C, Chang YC, Meng C, Zolg DP, Reinecke M, Zecha J, Wiechmann S, Heinzlmeir S, Scherr J, Hemmer B, Baynham M, Gingras AC, Boychenko O, Kuster B, (2020) "Robust, reproducible and quantitative analysis of thousands of proteomes by micro-flow LC-MS/MS." <i>Nat Commun</i> <b>11</b>(1):157; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31919466 31919466]; doi: [https://dx.doi.org/10.1038/s41467-019-13973-x 10.1038/s41467-019-13973-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31919466 2175]. | #Bian Y, Zheng R, Bayer FP, Wong C, Chang YC, Meng C, Zolg DP, Reinecke M, Zecha J, Wiechmann S, Heinzlmeir S, Scherr J, Hemmer B, Baynham M, Gingras AC, Boychenko O, Kuster B, (2020) "Robust, reproducible and quantitative analysis of thousands of proteomes by micro-flow LC-MS/MS." <i>Nat Commun</i> <b>11</b>(1):157; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31919466 31919466]; doi: [https://dx.doi.org/10.1038/s41467-019-13973-x 10.1038/s41467-019-13973-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31919466 2175]. | ||
- | #Bai B, Wang X, Li Y, Chen PC, Yu K, Dey KK, Yarbro JM, Han X, Lutz BM, Rao S, Jiao Y, Sifford JM, Han J, Wang M, Tan H, Shaw TI, Cho JH, Zhou S, Wang H, Niu M, Mancieri A, Messler KA, Sun X, Wu Z, Pagala V, High AA, Bi W, Zhang H, Chi H, Haroutunian V, Zhang B, Beach TG, Yu G, Peng J, (2020) "Deep Multilayer Brain Proteomics Identifies Molecular Networks in Alzheimer's Disease Progression." <i>Neuron</i> <b>105</b>(6):975–991.e7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31926610 31926610]; doi: [https://dx.doi.org/10.1016/j.neuron.2019.12.015 10.1016/j.neuron.2019.12.015]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31926610 | + | #Bai B, Wang X, Li Y, Chen PC, Yu K, Dey KK, Yarbro JM, Han X, Lutz BM, Rao S, Jiao Y, Sifford JM, Han J, Wang M, Tan H, Shaw TI, Cho JH, Zhou S, Wang H, Niu M, Mancieri A, Messler KA, Sun X, Wu Z, Pagala V, High AA, Bi W, Zhang H, Chi H, Haroutunian V, Zhang B, Beach TG, Yu G, Peng J, (2020) "Deep Multilayer Brain Proteomics Identifies Molecular Networks in Alzheimer's Disease Progression." <i>Neuron</i> <b>105</b>(6):975–991.e7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31926610 31926610]; doi: [https://dx.doi.org/10.1016/j.neuron.2019.12.015 10.1016/j.neuron.2019.12.015]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31926610 158]. |
#Hijazi M, Smith R, Rajeeve V, Bessant C, Cutillas PR, (2020) "Reconstructing kinase network topologies from phosphoproteomics data reveals cancer-associated rewiring." <i>Nat Biotechnol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31959955 31959955]; doi: [https://dx.doi.org/10.1038/s41587-019-0391-9 10.1038/s41587-019-0391-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31959955 874]. | #Hijazi M, Smith R, Rajeeve V, Bessant C, Cutillas PR, (2020) "Reconstructing kinase network topologies from phosphoproteomics data reveals cancer-associated rewiring." <i>Nat Biotechnol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31959955 31959955]; doi: [https://dx.doi.org/10.1038/s41587-019-0391-9 10.1038/s41587-019-0391-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31959955 874]. | ||
#Xu K, Yang L, Zhang L, Qi H, (2020) "Lack of AKAP3 disrupts integrity of the subcellular structure and proteome of mouse sperm and causes male sterility." <i>Development</i> <b>147</b>(2):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31969357 31969357]; doi: [https://dx.doi.org/10.1242/dev.181057 10.1242/dev.181057]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31969357 3]. | #Xu K, Yang L, Zhang L, Qi H, (2020) "Lack of AKAP3 disrupts integrity of the subcellular structure and proteome of mouse sperm and causes male sterility." <i>Development</i> <b>147</b>(2):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31969357 31969357]; doi: [https://dx.doi.org/10.1242/dev.181057 10.1242/dev.181057]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31969357 3]. | ||
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#Gonnet J, Poncelet L, Meriaux C, Gonçalves E, Weiss L, Tchitchek N, Pedruzzi E, Soria A, Boccara D, Vogt A, Bonduelle O, Hamm G, Ait-Belkacem R, Stauber J, Fournier I, Wisztorski M, Combadiere B, (2020) "Mechanisms of innate events during skin reaction following intradermal injection of seasonal influenza vaccine." <i>J Proteomics</i> <b>216</b>:103670; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31991189 31991189]; doi: [https://dx.doi.org/10.1016/j.jprot.2020.103670 10.1016/j.jprot.2020.103670]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31991189 48]. | #Gonnet J, Poncelet L, Meriaux C, Gonçalves E, Weiss L, Tchitchek N, Pedruzzi E, Soria A, Boccara D, Vogt A, Bonduelle O, Hamm G, Ait-Belkacem R, Stauber J, Fournier I, Wisztorski M, Combadiere B, (2020) "Mechanisms of innate events during skin reaction following intradermal injection of seasonal influenza vaccine." <i>J Proteomics</i> <b>216</b>:103670; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31991189 31991189]; doi: [https://dx.doi.org/10.1016/j.jprot.2020.103670 10.1016/j.jprot.2020.103670]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31991189 48]. | ||
#Veyel D, Wenger K, Broermann A, Bretschneider T, Luippold AH, Krawczyk B, Rist W, Simon E, (2020) "Biomarker discovery for chronic liver diseases by multi-omics - a preclinical case study." <i>Sci Rep</i> <b>10</b>(1):1314; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31992752 31992752]; doi: [https://dx.doi.org/10.1038/s41598-020-58030-6 10.1038/s41598-020-58030-6]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31992752 4]. | #Veyel D, Wenger K, Broermann A, Bretschneider T, Luippold AH, Krawczyk B, Rist W, Simon E, (2020) "Biomarker discovery for chronic liver diseases by multi-omics - a preclinical case study." <i>Sci Rep</i> <b>10</b>(1):1314; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31992752 31992752]; doi: [https://dx.doi.org/10.1038/s41598-020-58030-6 10.1038/s41598-020-58030-6]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31992752 4]. | ||
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#Lindberg T, de Ávila RI, Zeller KS, Levander F, Eriksson D, Chawade A, Lindstedt M, (2020) "An integrated transcriptomic- and proteomic-based approach to evaluate the human skin sensitization potential of glyphosate and its commercial agrochemical formulations." <i>J Proteomics</i> <b>217</b>:103647; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32006680 32006680]; doi: [https://dx.doi.org/10.1016/j.jprot.2020.103647 10.1016/j.jprot.2020.103647]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32006680 21]. | #Lindberg T, de Ávila RI, Zeller KS, Levander F, Eriksson D, Chawade A, Lindstedt M, (2020) "An integrated transcriptomic- and proteomic-based approach to evaluate the human skin sensitization potential of glyphosate and its commercial agrochemical formulations." <i>J Proteomics</i> <b>217</b>:103647; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32006680 32006680]; doi: [https://dx.doi.org/10.1016/j.jprot.2020.103647 10.1016/j.jprot.2020.103647]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32006680 21]. | ||
#Yasuda S, Tsuchiya H, Kaiho A, Guo Q, Ikeuchi K, Endo A, Arai N, Ohtake F, Murata S, Inada T, Baumeister W, Fernández-Busnadiego R, Tanaka K, Saeki Y, (2020) "Stress- and ubiquitylation-dependent phase separation of the proteasome." <i>Nature</i> <b>578</b>(7794):296–300; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32025036 32025036]; doi: [https://dx.doi.org/10.1038/s41586-020-1982-9 10.1038/s41586-020-1982-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32025036 6]. | #Yasuda S, Tsuchiya H, Kaiho A, Guo Q, Ikeuchi K, Endo A, Arai N, Ohtake F, Murata S, Inada T, Baumeister W, Fernández-Busnadiego R, Tanaka K, Saeki Y, (2020) "Stress- and ubiquitylation-dependent phase separation of the proteasome." <i>Nature</i> <b>578</b>(7794):296–300; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32025036 32025036]; doi: [https://dx.doi.org/10.1038/s41586-020-1982-9 10.1038/s41586-020-1982-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32025036 6]. | ||
- | |||
#Pini T, Parks J, Russ J, Dzieciatkowska M, Hansen KC, Schoolcraft WB, Katz-Jaffe M, (2020) "Obesity significantly alters the human sperm proteome, with potential implications for fertility." <i>J Assist Reprod Genet</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32026202 32026202]; doi: [https://dx.doi.org/10.1007/s10815-020-01707-8 10.1007/s10815-020-01707-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32026202 20]. | #Pini T, Parks J, Russ J, Dzieciatkowska M, Hansen KC, Schoolcraft WB, Katz-Jaffe M, (2020) "Obesity significantly alters the human sperm proteome, with potential implications for fertility." <i>J Assist Reprod Genet</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32026202 32026202]; doi: [https://dx.doi.org/10.1007/s10815-020-01707-8 10.1007/s10815-020-01707-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32026202 20]. | ||
#Storey AJ, Hardman RE, Byrum SD, Mackintosh SG, Edmondson RD, Wahls WP, Tackett AJ, Lewis JA, (2020) "Accurate and Sensitive Quantitation of the Dynamic Heat Shock Proteome Using Tandem Mass Tags." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32027144 32027144]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00704 10.1021/acs.jproteome.9b00704]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32027144 2]. | #Storey AJ, Hardman RE, Byrum SD, Mackintosh SG, Edmondson RD, Wahls WP, Tackett AJ, Lewis JA, (2020) "Accurate and Sensitive Quantitation of the Dynamic Heat Shock Proteome Using Tandem Mass Tags." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32027144 32027144]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00704 10.1021/acs.jproteome.9b00704]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32027144 2]. | ||
#Eldridge MJG, Pereira JM, Impens F, Hamon MA, (2020) "Active nuclear import of the deacetylase Sirtuin-2 is controlled by its C-terminus and importins." <i>Sci Rep</i> <b>10</b>(1):2034; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32042025 32042025]; doi: [https://dx.doi.org/10.1038/s41598-020-58397-6 10.1038/s41598-020-58397-6]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32042025 6]. | #Eldridge MJG, Pereira JM, Impens F, Hamon MA, (2020) "Active nuclear import of the deacetylase Sirtuin-2 is controlled by its C-terminus and importins." <i>Sci Rep</i> <b>10</b>(1):2034; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32042025 32042025]; doi: [https://dx.doi.org/10.1038/s41598-020-58397-6 10.1038/s41598-020-58397-6]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32042025 6]. | ||
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#Zhao Q, Laverdure JP, Lanoix J, Durette C, Coté C, Bonneil E, Laumont CM, Gendron P, Vincent K, Courcelles M, Lemieux S, Millar DG, Ohashi PS, Thibault P, Perreault C, (2020) "Proteogenomics uncovers a vast repertoire of shared tumor-specific antigens in ovarian cancer." <i>Cancer Immunol Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32047025 32047025]; doi: [https://dx.doi.org/10.1158/2326-6066.CIR-19-0541 10.1158/2326-6066.CIR-19-0541]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32047025 12]. | #Zhao Q, Laverdure JP, Lanoix J, Durette C, Coté C, Bonneil E, Laumont CM, Gendron P, Vincent K, Courcelles M, Lemieux S, Millar DG, Ohashi PS, Thibault P, Perreault C, (2020) "Proteogenomics uncovers a vast repertoire of shared tumor-specific antigens in ovarian cancer." <i>Cancer Immunol Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32047025 32047025]; doi: [https://dx.doi.org/10.1158/2326-6066.CIR-19-0541 10.1158/2326-6066.CIR-19-0541]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32047025 12]. | ||
#Plum T, Wang X, Rettel M, Krijgsveld J, Feyerabend TB, Rodewald HR, (2020) "Human Mast Cell Proteome Reveals Unique Lineage, Putative Functions, and Structural Basis for Cell Ablation." <i>Immunity</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32049054 32049054]; doi: [https://dx.doi.org/10.1016/j.immuni.2020.01.012 10.1016/j.immuni.2020.01.012]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32049054 12]. | #Plum T, Wang X, Rettel M, Krijgsveld J, Feyerabend TB, Rodewald HR, (2020) "Human Mast Cell Proteome Reveals Unique Lineage, Putative Functions, and Structural Basis for Cell Ablation." <i>Immunity</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32049054 32049054]; doi: [https://dx.doi.org/10.1016/j.immuni.2020.01.012 10.1016/j.immuni.2020.01.012]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32049054 12]. | ||
#Ray S, Valekunja UK, Stangherlin A, Howell SA, Snijders AP, Damodaran G, Reddy AB, (2020) "Circadian rhythms in the absence of the clock gene <i>Bmal1</i>." <i>Science</i> <b>367</b>(6479):800–806; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32054765 32054765]; doi: [https://dx.doi.org/10.1126/science.aaw7365 10.1126/science.aaw7365]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32054765 40]. | #Ray S, Valekunja UK, Stangherlin A, Howell SA, Snijders AP, Damodaran G, Reddy AB, (2020) "Circadian rhythms in the absence of the clock gene <i>Bmal1</i>." <i>Science</i> <b>367</b>(6479):800–806; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32054765 32054765]; doi: [https://dx.doi.org/10.1126/science.aaw7365 10.1126/science.aaw7365]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32054765 40]. | ||
#Saddala MS, Lennikov A, Huang H, (2020) "Placental growth factor regulates the pentose phosphate pathway and antioxidant defense systems in human retinal endothelial cells." <i>J Proteomics</i> <b>217</b>:103682; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32058040 32058040]; doi: [https://dx.doi.org/10.1016/j.jprot.2020.103682 10.1016/j.jprot.2020.103682]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32058040 1]. | #Saddala MS, Lennikov A, Huang H, (2020) "Placental growth factor regulates the pentose phosphate pathway and antioxidant defense systems in human retinal endothelial cells." <i>J Proteomics</i> <b>217</b>:103682; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32058040 32058040]; doi: [https://dx.doi.org/10.1016/j.jprot.2020.103682 10.1016/j.jprot.2020.103682]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32058040 1]. | ||
- | |||
#Kosok M, Alli-Shaik A, Bay BH, Gunaratne J, (2020) "Comprehensive Proteomic Characterization Reveals Subclass-Specific Molecular Aberrations within Triple-negative Breast Cancer." <i>iScience</i> <b>23</b>(2):100868; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32058975 32058975]; doi: [https://dx.doi.org/10.1016/j.isci.2020.100868 10.1016/j.isci.2020.100868]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32058975 8]. | #Kosok M, Alli-Shaik A, Bay BH, Gunaratne J, (2020) "Comprehensive Proteomic Characterization Reveals Subclass-Specific Molecular Aberrations within Triple-negative Breast Cancer." <i>iScience</i> <b>23</b>(2):100868; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32058975 32058975]; doi: [https://dx.doi.org/10.1016/j.isci.2020.100868 10.1016/j.isci.2020.100868]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32058975 8]. | ||
#Dou Y, Kawaler EA, Cui Zhou D, Gritsenko MA, Huang C, Blumenberg L, Karpova A, Petyuk VA, Savage SR, Satpathy S, Liu W, Wu Y, Tsai CF, Wen B, Li Z, Cao S, Moon J, Shi Z, Cornwell M, Wyczalkowski MA, Chu RK, Vasaikar S, Zhou H, Gao Q, Moore RJ, Li K, Sethuraman S, Monroe ME, Zhao R, Heiman D, Krug K, Clauser K, Kothadia R, Maruvka Y, Pico AR, Oliphant AE, Hoskins EL, Pugh SL, Beecroft SJI, Adams DW, Jarman JC, Kong A, Chang HY, Reva B, Liao Y, Rykunov D, Colaprico A, Chen XS, Czekański A, Jędryka M, Matkowski R, Wiznerowicz M, Hiltke T, Boja E, Kinsinger CR, Mesri M, Robles AI, Rodriguez H, Mutch D, Fuh K, Ellis MJ, DeLair D, Thiagarajan M, Mani DR, Getz G, Noble M, Nesvizhskii AI, Wang P, Anderson ML, Levine DA, Smith RD, Payne SH, Ruggles KV, Rodland KD, Ding L, Zhang B, Liu T, Fenyö D, Clinical Proteomic Tumor Analysis Consortium., (2020) "Proteogenomic Characterization of Endometrial Carcinoma." <i>Cell</i> <b>180</b>(4):729–748.e26; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32059776 32059776]; doi: [https://dx.doi.org/10.1016/j.cell.2020.01.026 10.1016/j.cell.2020.01.026]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32059776 208]. | #Dou Y, Kawaler EA, Cui Zhou D, Gritsenko MA, Huang C, Blumenberg L, Karpova A, Petyuk VA, Savage SR, Satpathy S, Liu W, Wu Y, Tsai CF, Wen B, Li Z, Cao S, Moon J, Shi Z, Cornwell M, Wyczalkowski MA, Chu RK, Vasaikar S, Zhou H, Gao Q, Moore RJ, Li K, Sethuraman S, Monroe ME, Zhao R, Heiman D, Krug K, Clauser K, Kothadia R, Maruvka Y, Pico AR, Oliphant AE, Hoskins EL, Pugh SL, Beecroft SJI, Adams DW, Jarman JC, Kong A, Chang HY, Reva B, Liao Y, Rykunov D, Colaprico A, Chen XS, Czekański A, Jędryka M, Matkowski R, Wiznerowicz M, Hiltke T, Boja E, Kinsinger CR, Mesri M, Robles AI, Rodriguez H, Mutch D, Fuh K, Ellis MJ, DeLair D, Thiagarajan M, Mani DR, Getz G, Noble M, Nesvizhskii AI, Wang P, Anderson ML, Levine DA, Smith RD, Payne SH, Ruggles KV, Rodland KD, Ding L, Zhang B, Liu T, Fenyö D, Clinical Proteomic Tumor Analysis Consortium., (2020) "Proteogenomic Characterization of Endometrial Carcinoma." <i>Cell</i> <b>180</b>(4):729–748.e26; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32059776 32059776]; doi: [https://dx.doi.org/10.1016/j.cell.2020.01.026 10.1016/j.cell.2020.01.026]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32059776 208]. | ||
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#Villaseñor R, Pfaendler R, Ambrosi C, Butz S, Giuliani S, Bryan E, Sheahan TW, Gable AL, Schmolka N, Manzo M, Wirz J, Feller C, von Mering C, Aebersold R, Voigt P, Baubec T, (2020) "ChromID identifies the protein interactome at chromatin marks." <i>Nat Biotechnol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32123383 32123383]; doi: [https://dx.doi.org/10.1038/s41587-020-0434-2 10.1038/s41587-020-0434-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32123383 32]. | #Villaseñor R, Pfaendler R, Ambrosi C, Butz S, Giuliani S, Bryan E, Sheahan TW, Gable AL, Schmolka N, Manzo M, Wirz J, Feller C, von Mering C, Aebersold R, Voigt P, Baubec T, (2020) "ChromID identifies the protein interactome at chromatin marks." <i>Nat Biotechnol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32123383 32123383]; doi: [https://dx.doi.org/10.1038/s41587-020-0434-2 10.1038/s41587-020-0434-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32123383 32]. | ||
#Subbannayya Y, Pinto SM, Mohanty V, Dagamajalu S, Prasad TSK, Murthy KR, (2020) "What Makes Cornea Immunologically Unique and Privileged? Mechanistic Clues from a High-Resolution Proteomic Landscape of the Human Cornea." <i>OMICS</i> <b>24</b>(3):129–139; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32125911 32125911]; doi: [https://dx.doi.org/10.1089/omi.2019.0190 10.1089/omi.2019.0190]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32125911 2]. | #Subbannayya Y, Pinto SM, Mohanty V, Dagamajalu S, Prasad TSK, Murthy KR, (2020) "What Makes Cornea Immunologically Unique and Privileged? Mechanistic Clues from a High-Resolution Proteomic Landscape of the Human Cornea." <i>OMICS</i> <b>24</b>(3):129–139; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32125911 32125911]; doi: [https://dx.doi.org/10.1089/omi.2019.0190 10.1089/omi.2019.0190]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32125911 2]. | ||
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#Ding H, Fazelinia H, Spruce LA, Weiss DA, Zderic SA, Seeholzer SH, (2020) "Urine proteomics: Evaluation of different sample preparation workflows for quantitative, reproducible and improved depth of analysis." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32129078 32129078]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00772 10.1021/acs.jproteome.9b00772]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32129078 16]. | #Ding H, Fazelinia H, Spruce LA, Weiss DA, Zderic SA, Seeholzer SH, (2020) "Urine proteomics: Evaluation of different sample preparation workflows for quantitative, reproducible and improved depth of analysis." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32129078 32129078]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00772 10.1021/acs.jproteome.9b00772]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32129078 16]. | ||
#Bernatik O, Pejskova P, Vyslouzil D, Hanakova K, Zdrahal Z, Cajanek L, (2020) "Phosphorylation of multiple proteins involved in ciliogenesis by Tau Tubulin kinase 2." <i>Mol Biol Cell</i> <b></b>:mbcE19060334; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32129703 32129703]; doi: [https://dx.doi.org/10.1091/mbc.E19-06-0334 10.1091/mbc.E19-06-0334]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32129703 165]. | #Bernatik O, Pejskova P, Vyslouzil D, Hanakova K, Zdrahal Z, Cajanek L, (2020) "Phosphorylation of multiple proteins involved in ciliogenesis by Tau Tubulin kinase 2." <i>Mol Biol Cell</i> <b></b>:mbcE19060334; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32129703 32129703]; doi: [https://dx.doi.org/10.1091/mbc.E19-06-0334 10.1091/mbc.E19-06-0334]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32129703 165]. | ||
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#Tannous A, Boonen M, Zheng H, Zhao C, Germain CJ, Moore DF, Sleat DE, Jadot M, Lobel P, (2020) "Comparative Analysis of Quantitative Mass Spectrometric Methods for Subcellular Proteomics." <i>J Proteome Res</i> <b>19</b>(4):1718–1730; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32134668 32134668]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00862 10.1021/acs.jproteome.9b00862]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32134668 25]. | #Tannous A, Boonen M, Zheng H, Zhao C, Germain CJ, Moore DF, Sleat DE, Jadot M, Lobel P, (2020) "Comparative Analysis of Quantitative Mass Spectrometric Methods for Subcellular Proteomics." <i>J Proteome Res</i> <b>19</b>(4):1718–1730; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32134668 32134668]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00862 10.1021/acs.jproteome.9b00862]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32134668 25]. | ||
#Shayan R, Rinaldi D, Larburu N, Plassart L, Balor S, Bouyssié D, Lebaron S, Marcoux J, Gleizes PE, Plisson-Chastang C, (2020) "Good Vibrations: Structural Remodeling of Maturing Yeast Pre-40S Ribosomal Particles Followed by Cryo-Electron Microscopy." <i>Molecules</i> <b>25</b>(5):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32138239 32138239]; doi: [https://dx.doi.org/10.3390/molecules25051125 10.3390/molecules25051125]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32138239 2]. | #Shayan R, Rinaldi D, Larburu N, Plassart L, Balor S, Bouyssié D, Lebaron S, Marcoux J, Gleizes PE, Plisson-Chastang C, (2020) "Good Vibrations: Structural Remodeling of Maturing Yeast Pre-40S Ribosomal Particles Followed by Cryo-Electron Microscopy." <i>Molecules</i> <b>25</b>(5):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32138239 32138239]; doi: [https://dx.doi.org/10.3390/molecules25051125 10.3390/molecules25051125]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32138239 2]. | ||
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#Parker BL, Kiens B, Wojtaszewski JFP, Richter EA, James DE, (2020) "Quantification of exercise-regulated ubiquitin signaling in human skeletal muscle identifies protein modification cross talk via NEDDylation." <i>FASEB J</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32141134 32141134]; doi: [https://dx.doi.org/10.1096/fj.202000075R 10.1096/fj.202000075R]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32141134 45]. | #Parker BL, Kiens B, Wojtaszewski JFP, Richter EA, James DE, (2020) "Quantification of exercise-regulated ubiquitin signaling in human skeletal muscle identifies protein modification cross talk via NEDDylation." <i>FASEB J</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32141134 32141134]; doi: [https://dx.doi.org/10.1096/fj.202000075R 10.1096/fj.202000075R]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32141134 45]. | ||
#Wilson JP, Ipsaro JJ, Del Giudice SN, Turna NS, Gauss CM, Dusenbury KH, Marquart K, Rivera KD, Pappin DJ, (2020) "Tryp-N: A Thermostable Protease for the Production of N-terminal Argininyl and Lysinyl Peptides." <i>J Proteome Res</i> <b>19</b>(4):1459–1469; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32141294 32141294]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00713 10.1021/acs.jproteome.9b00713]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32141294 3]. | #Wilson JP, Ipsaro JJ, Del Giudice SN, Turna NS, Gauss CM, Dusenbury KH, Marquart K, Rivera KD, Pappin DJ, (2020) "Tryp-N: A Thermostable Protease for the Production of N-terminal Argininyl and Lysinyl Peptides." <i>J Proteome Res</i> <b>19</b>(4):1459–1469; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32141294 32141294]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00713 10.1021/acs.jproteome.9b00713]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32141294 3]. | ||
#Dietachmayr M, Rathakrishnan A, Karpiuk O, von Zweydorf F, Engleitner T, Fernández-Sáiz V, Schenk P, Ueffing M, Rad R, Eilers M, Gloeckner CJ, Clemm von Hohenberg K, Bassermann F, (2020) "Antagonistic activities of CDC14B and CDK1 on USP9X regulate WT1-dependent mitotic transcription and survival." <i>Nat Commun</i> <b>11</b>(1):1268; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32152317 32152317]; doi: [https://dx.doi.org/10.1038/s41467-020-15059-5 10.1038/s41467-020-15059-5]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32152317 3]. | #Dietachmayr M, Rathakrishnan A, Karpiuk O, von Zweydorf F, Engleitner T, Fernández-Sáiz V, Schenk P, Ueffing M, Rad R, Eilers M, Gloeckner CJ, Clemm von Hohenberg K, Bassermann F, (2020) "Antagonistic activities of CDC14B and CDK1 on USP9X regulate WT1-dependent mitotic transcription and survival." <i>Nat Commun</i> <b>11</b>(1):1268; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32152317 32152317]; doi: [https://dx.doi.org/10.1038/s41467-020-15059-5 10.1038/s41467-020-15059-5]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32152317 3]. | ||
#Wan X, Vomund AN, Peterson OJ, Chervonsky AV, Lichti CF, Unanue ER, (2020) "The MHC-II peptidome of pancreatic islets identifies key features of autoimmune peptides." <i>Nat Immunol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32152506 32152506]; doi: [https://dx.doi.org/10.1038/s41590-020-0623-7 10.1038/s41590-020-0623-7]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32152506 9]. | #Wan X, Vomund AN, Peterson OJ, Chervonsky AV, Lichti CF, Unanue ER, (2020) "The MHC-II peptidome of pancreatic islets identifies key features of autoimmune peptides." <i>Nat Immunol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32152506 32152506]; doi: [https://dx.doi.org/10.1038/s41590-020-0623-7 10.1038/s41590-020-0623-7]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32152506 9]. | ||
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#Coscia F, Doll S, Bech JM, Schweizer L, Mund A, Lengyel E, Lindebjerg J, Madsen GI, Moreira JMA, Mann M, (2020) "A streamlined mass spectrometry-based proteomics workflow for large scale FFPE tissue analysis." <i>J Pathol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32154592 32154592]; doi: [https://dx.doi.org/10.1002/path.5420 10.1002/path.5420]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32154592 52]. | #Coscia F, Doll S, Bech JM, Schweizer L, Mund A, Lengyel E, Lindebjerg J, Madsen GI, Moreira JMA, Mann M, (2020) "A streamlined mass spectrometry-based proteomics workflow for large scale FFPE tissue analysis." <i>J Pathol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32154592 32154592]; doi: [https://dx.doi.org/10.1002/path.5420 10.1002/path.5420]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32154592 52]. | ||
#Yin CF, Kao SC, Hsu CL, Chang YW, Cheung CHY, Huang HC, Juan HF, (2020) "Phosphoproteome Analysis Reveals Dynamic Heat Shock Protein 27 Phosphorylation in Tanshinone IIA-Induced Cell Death." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32154729 32154729]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00836 10.1021/acs.jproteome.9b00836]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32154729 168]. | #Yin CF, Kao SC, Hsu CL, Chang YW, Cheung CHY, Huang HC, Juan HF, (2020) "Phosphoproteome Analysis Reveals Dynamic Heat Shock Protein 27 Phosphorylation in Tanshinone IIA-Induced Cell Death." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32154729 32154729]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00836 10.1021/acs.jproteome.9b00836]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32154729 168]. | ||
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#Wegrzyn AB, Herzog K, Gerding A, Kwiatkowski M, Wolters JC, Dolga AM, van Lint AEM, Wanders RJA, Waterham HR, Bakker BM, (2020) "Fibroblast-specific genome-scale modelling predicts an imbalance in amino acid metabolism in Refsum disease." <i>FEBS J</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32160399 32160399]; doi: [https://dx.doi.org/10.1111/febs.15292 10.1111/febs.15292]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32160399 71]. | #Wegrzyn AB, Herzog K, Gerding A, Kwiatkowski M, Wolters JC, Dolga AM, van Lint AEM, Wanders RJA, Waterham HR, Bakker BM, (2020) "Fibroblast-specific genome-scale modelling predicts an imbalance in amino acid metabolism in Refsum disease." <i>FEBS J</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32160399 32160399]; doi: [https://dx.doi.org/10.1111/febs.15292 10.1111/febs.15292]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32160399 71]. | ||
#Chen L, Shi H, Koftori D, Sekine T, Nicastri A, Ternette N, Bowness P, (2020) "Identification of an unconventional sub-peptidome bound to the Behçet's disease - associated HLA-B*51:01 that is regulated by endoplasmic reticulum aminopeptidase 1 (ERAP1)." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32161166 32161166]; doi: [https://dx.doi.org/10.1074/mcp.RA119.001617 10.1074/mcp.RA119.001617]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32161166 11]. | #Chen L, Shi H, Koftori D, Sekine T, Nicastri A, Ternette N, Bowness P, (2020) "Identification of an unconventional sub-peptidome bound to the Behçet's disease - associated HLA-B*51:01 that is regulated by endoplasmic reticulum aminopeptidase 1 (ERAP1)." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32161166 32161166]; doi: [https://dx.doi.org/10.1074/mcp.RA119.001617 10.1074/mcp.RA119.001617]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32161166 11]. | ||
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#Carnesecchi J, Sigismondo G, Domsch K, Baader CEP, Rafiee MR, Krijgsveld J, Lohmann I, (2020) "Multi-level and lineage-specific interactomes of the Hox transcription factor Ubx contribute to its functional specificity." <i>Nat Commun</i> <b>11</b>(1):1388; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32170121 32170121]; doi: [https://dx.doi.org/10.1038/s41467-020-15223-x 10.1038/s41467-020-15223-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32170121 36]. | #Carnesecchi J, Sigismondo G, Domsch K, Baader CEP, Rafiee MR, Krijgsveld J, Lohmann I, (2020) "Multi-level and lineage-specific interactomes of the Hox transcription factor Ubx contribute to its functional specificity." <i>Nat Commun</i> <b>11</b>(1):1388; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32170121 32170121]; doi: [https://dx.doi.org/10.1038/s41467-020-15223-x 10.1038/s41467-020-15223-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32170121 36]. | ||
#Aasebø E, Berven FS, Bartaula-Brevik S, Stokowy T, Hovland R, Vaudel M, Døskeland SO, McCormack E, Batth TS, Olsen JV, Bruserud Ø, Selheim F, Hernandez-Valladares M, (2020) "Proteome and Phosphoproteome Changes Associated with Prognosis in Acute Myeloid Leukemia." <i>Cancers (Basel)</i> <b>12</b>(3):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32192169 32192169]; doi: [https://dx.doi.org/10.3390/cancers12030709 10.3390/cancers12030709]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32192169 214]. | #Aasebø E, Berven FS, Bartaula-Brevik S, Stokowy T, Hovland R, Vaudel M, Døskeland SO, McCormack E, Batth TS, Olsen JV, Bruserud Ø, Selheim F, Hernandez-Valladares M, (2020) "Proteome and Phosphoproteome Changes Associated with Prognosis in Acute Myeloid Leukemia." <i>Cancers (Basel)</i> <b>12</b>(3):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32192169 32192169]; doi: [https://dx.doi.org/10.3390/cancers12030709 10.3390/cancers12030709]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32192169 214]. | ||
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#Morishita Y, Kabil O, Young KZ, Kellogg AP, Chang A, Arvan P, (2020) "Thyrocyte cell survival and adaptation to chronic endoplasmic reticulum stress due to misfolded thyroglobulin." <i>J Biol Chem</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32241916 32241916]; doi: [https://dx.doi.org/10.1074/jbc.RA120.012656 10.1074/jbc.RA120.012656]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32241916 1]. | #Morishita Y, Kabil O, Young KZ, Kellogg AP, Chang A, Arvan P, (2020) "Thyrocyte cell survival and adaptation to chronic endoplasmic reticulum stress due to misfolded thyroglobulin." <i>J Biol Chem</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32241916 32241916]; doi: [https://dx.doi.org/10.1074/jbc.RA120.012656 10.1074/jbc.RA120.012656]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32241916 1]. | ||
#Mizukami H, Hathway B, Procopio N, (2020) "Aquatic Decomposition of Mammalian Corpses: A Forensic Proteomic Approach." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32242669 32242669]; doi: [https://dx.doi.org/10.1021/acs.jproteome.0c00060 10.1021/acs.jproteome.0c00060]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32242669 22]. | #Mizukami H, Hathway B, Procopio N, (2020) "Aquatic Decomposition of Mammalian Corpses: A Forensic Proteomic Approach." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32242669 32242669]; doi: [https://dx.doi.org/10.1021/acs.jproteome.0c00060 10.1021/acs.jproteome.0c00060]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32242669 22]. | ||
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#Xu G, Fromholt SE, Chakrabarty P, Zhu F, Liu X, Pace MC, Koh J, Golde TE, Levites Y, Lewis J, Borchelt DR, (2020) "Diversity in Aβ deposit morphology and secondary proteome insolubility across models of Alzheimer-type amyloidosis." <i>Acta Neuropathol Commun</i> <b>8</b>(1):43; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32252825 32252825]; doi: [https://dx.doi.org/10.1186/s40478-020-00911-y 10.1186/s40478-020-00911-y]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32252825 57]. | #Xu G, Fromholt SE, Chakrabarty P, Zhu F, Liu X, Pace MC, Koh J, Golde TE, Levites Y, Lewis J, Borchelt DR, (2020) "Diversity in Aβ deposit morphology and secondary proteome insolubility across models of Alzheimer-type amyloidosis." <i>Acta Neuropathol Commun</i> <b>8</b>(1):43; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32252825 32252825]; doi: [https://dx.doi.org/10.1186/s40478-020-00911-y 10.1186/s40478-020-00911-y]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32252825 57]. | ||
#Carter SP, Moran AL, Matallanas D, McManus GJ, Blacque OE, Kennedy BN, (2020) "Genetic Deletion of Zebrafish Rab28 Causes Defective Outer Segment Shedding, but Not Retinal Degeneration." <i>Front Cell Dev Biol</i> <b>8</b>:136; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32258030 32258030]; doi: [https://dx.doi.org/10.3389/fcell.2020.00136 10.3389/fcell.2020.00136]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32258030 12]. | #Carter SP, Moran AL, Matallanas D, McManus GJ, Blacque OE, Kennedy BN, (2020) "Genetic Deletion of Zebrafish Rab28 Causes Defective Outer Segment Shedding, but Not Retinal Degeneration." <i>Front Cell Dev Biol</i> <b>8</b>:136; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32258030 32258030]; doi: [https://dx.doi.org/10.3389/fcell.2020.00136 10.3389/fcell.2020.00136]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32258030 12]. | ||
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#Djomehri SI, Gonzalez ME, da Veiga Leprevost F, Tekula SR, Chang HY, White MJ, Cimino-Mathews A, Burman B, Basrur V, Argani P, Nesvizhskii AI, Kleer CG, (2020) "Quantitative proteomic landscape of metaplastic breast carcinoma pathological subtypes and their relationship to triple-negative tumors." <i>Nat Commun</i> <b>11</b>(1):1723; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32265444 32265444]; doi: [https://dx.doi.org/10.1038/s41467-020-15283-z 10.1038/s41467-020-15283-z]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32265444 4]. | #Djomehri SI, Gonzalez ME, da Veiga Leprevost F, Tekula SR, Chang HY, White MJ, Cimino-Mathews A, Burman B, Basrur V, Argani P, Nesvizhskii AI, Kleer CG, (2020) "Quantitative proteomic landscape of metaplastic breast carcinoma pathological subtypes and their relationship to triple-negative tumors." <i>Nat Commun</i> <b>11</b>(1):1723; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32265444 32265444]; doi: [https://dx.doi.org/10.1038/s41467-020-15283-z 10.1038/s41467-020-15283-z]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32265444 4]. | ||
#Busso CS, Guidry JJ, Gonzalez JJ, Zorba V, Son LS, Winsauer PJ, Walvekar RR, (2020) "A comprehensive analysis of sialolith proteins and the clinical implications." <i>Clin Proteomics</i> <b>17</b>:12; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32265614 32265614]; doi: [https://dx.doi.org/10.1186/s12014-020-09275-w 10.1186/s12014-020-09275-w]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32265614 1]. | #Busso CS, Guidry JJ, Gonzalez JJ, Zorba V, Son LS, Winsauer PJ, Walvekar RR, (2020) "A comprehensive analysis of sialolith proteins and the clinical implications." <i>Clin Proteomics</i> <b>17</b>:12; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32265614 32265614]; doi: [https://dx.doi.org/10.1186/s12014-020-09275-w 10.1186/s12014-020-09275-w]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32265614 1]. | ||
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#Hoesl C, Zanuttigh E, Fröhlich T, Philippou-Massier J, Krebs S, Blum H, Dahlhoff M, (2020) "The secretome of skin cancer cells activates the mTOR/MYC pathway in healthy keratinocytes and induces tumorigenic properties." <i>Biochim Biophys Acta Mol Cell Res</i> <b>1867</b>(8):118717; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32283126 32283126]; doi: [https://dx.doi.org/10.1016/j.bbamcr.2020.118717 10.1016/j.bbamcr.2020.118717]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32283126 12]. | #Hoesl C, Zanuttigh E, Fröhlich T, Philippou-Massier J, Krebs S, Blum H, Dahlhoff M, (2020) "The secretome of skin cancer cells activates the mTOR/MYC pathway in healthy keratinocytes and induces tumorigenic properties." <i>Biochim Biophys Acta Mol Cell Res</i> <b>1867</b>(8):118717; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32283126 32283126]; doi: [https://dx.doi.org/10.1016/j.bbamcr.2020.118717 10.1016/j.bbamcr.2020.118717]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32283126 12]. | ||
#Jarzab A, Kurzawa N, Hopf T, Moerch M, Zecha J, Leijten N, Bian Y, Musiol E, Maschberger M, Stoehr G, Becher I, Daly C, Samaras P, Mergner J, Spanier B, Angelov A, Werner T, Bantscheff M, Wilhelm M, Klingenspor M, Lemeer S, Liebl W, Hahne H, Savitski MM, Kuster B, (2020) "Meltome atlas-thermal proteome stability across the tree of life." <i>Nat Methods</i> <b>17</b>(5):495–503; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32284610 32284610]; doi: [https://dx.doi.org/10.1038/s41592-020-0801-4 10.1038/s41592-020-0801-4]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32284610 31]. | #Jarzab A, Kurzawa N, Hopf T, Moerch M, Zecha J, Leijten N, Bian Y, Musiol E, Maschberger M, Stoehr G, Becher I, Daly C, Samaras P, Mergner J, Spanier B, Angelov A, Werner T, Bantscheff M, Wilhelm M, Klingenspor M, Lemeer S, Liebl W, Hahne H, Savitski MM, Kuster B, (2020) "Meltome atlas-thermal proteome stability across the tree of life." <i>Nat Methods</i> <b>17</b>(5):495–503; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32284610 32284610]; doi: [https://dx.doi.org/10.1038/s41592-020-0801-4 10.1038/s41592-020-0801-4]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32284610 31]. | ||
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#Goebel T, Mausbach S, Tuermer A, Eltahir H, Winter D, Gieselmann V, Thelen M, (2020) "Proteaphagy in mammalian cells can function independent of ATG5/ATG7." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32299840 32299840]; doi: [https://dx.doi.org/10.1074/mcp.RA120.001983 10.1074/mcp.RA120.001983]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32299840 149]. | #Goebel T, Mausbach S, Tuermer A, Eltahir H, Winter D, Gieselmann V, Thelen M, (2020) "Proteaphagy in mammalian cells can function independent of ATG5/ATG7." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32299840 32299840]; doi: [https://dx.doi.org/10.1074/mcp.RA120.001983 10.1074/mcp.RA120.001983]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32299840 149]. | ||
#Pancholi S, Ribas R, Simigdala N, Schuster E, Nikitorowicz-Buniak J, Ressa A, Gao Q, Leal MF, Bhamra A, Thornhill A, Morisset L, Montaudon E, Sourd L, Fitzpatrick M, Altelaar M, Johnston SR, Marangoni E, Dowsett M, Martin LA, (2020) "Tumour kinome re-wiring governs resistance to palbociclib in oestrogen receptor positive breast cancers, highlighting new therapeutic modalities." <i>Oncogene</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32307447 32307447]; doi: [https://dx.doi.org/10.1038/s41388-020-1284-6 10.1038/s41388-020-1284-6]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32307447 36]. | #Pancholi S, Ribas R, Simigdala N, Schuster E, Nikitorowicz-Buniak J, Ressa A, Gao Q, Leal MF, Bhamra A, Thornhill A, Morisset L, Montaudon E, Sourd L, Fitzpatrick M, Altelaar M, Johnston SR, Marangoni E, Dowsett M, Martin LA, (2020) "Tumour kinome re-wiring governs resistance to palbociclib in oestrogen receptor positive breast cancers, highlighting new therapeutic modalities." <i>Oncogene</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32307447 32307447]; doi: [https://dx.doi.org/10.1038/s41388-020-1284-6 10.1038/s41388-020-1284-6]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32307447 36]. | ||
#Chen Z, Wang C, Lei C, Feng X, Li C, Jung SY, Qin J, Chen J, (2020) "Phosphoproteomics Analysis Reveals a Potential Role of CHK1 in Regulation of Innate Immunity through IRF3." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32314919 32314919]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00829 10.1021/acs.jproteome.9b00829]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32314919 48]. | #Chen Z, Wang C, Lei C, Feng X, Li C, Jung SY, Qin J, Chen J, (2020) "Phosphoproteomics Analysis Reveals a Potential Role of CHK1 in Regulation of Innate Immunity through IRF3." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32314919 32314919]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00829 10.1021/acs.jproteome.9b00829]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32314919 48]. | ||
#Pourhaghighi R, Ash PEA, Phanse S, Goebels F, Hu LZM, Chen S, Zhang Y, Wierbowski SD, Boudeau S, Moutaoufik MT, Malty RH, Malolepsza E, Tsafou K, Nathan A, Cromar G, Guo H, Abdullatif AA, Apicco DJ, Becker LA, Gitler AD, Pulst SM, Youssef A, Hekman R, Havugimana PC, White CA, Blum BC, Ratti A, Bryant CD, Parkinson J, Lage K, Babu M, Yu H, Bader GD, Wolozin B, Emili A, (2020) "BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain." <i>Cell Syst</i> <b>10</b>(4):333–350.e14; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32325033 32325033]; doi: [https://dx.doi.org/10.1016/j.cels.2020.03.003 10.1016/j.cels.2020.03.003]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32325033 578]. | #Pourhaghighi R, Ash PEA, Phanse S, Goebels F, Hu LZM, Chen S, Zhang Y, Wierbowski SD, Boudeau S, Moutaoufik MT, Malty RH, Malolepsza E, Tsafou K, Nathan A, Cromar G, Guo H, Abdullatif AA, Apicco DJ, Becker LA, Gitler AD, Pulst SM, Youssef A, Hekman R, Havugimana PC, White CA, Blum BC, Ratti A, Bryant CD, Parkinson J, Lage K, Babu M, Yu H, Bader GD, Wolozin B, Emili A, (2020) "BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain." <i>Cell Syst</i> <b>10</b>(4):333–350.e14; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32325033 32325033]; doi: [https://dx.doi.org/10.1016/j.cels.2020.03.003 10.1016/j.cels.2020.03.003]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32325033 578]. | ||
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#Ojalill M, Virtanen N, Rappu P, Siljamäki E, Taimen P, Heino J, (2020) "Interaction between prostate cancer cells and prostate fibroblasts promotes accumulation and proteolytic processing of basement membrane proteins." <i>Prostate</i> <b>80</b>(9):715–726; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32364250 32364250]; doi: [https://dx.doi.org/10.1002/pros.23985 10.1002/pros.23985]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32364250 18]. | #Ojalill M, Virtanen N, Rappu P, Siljamäki E, Taimen P, Heino J, (2020) "Interaction between prostate cancer cells and prostate fibroblasts promotes accumulation and proteolytic processing of basement membrane proteins." <i>Prostate</i> <b>80</b>(9):715–726; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32364250 32364250]; doi: [https://dx.doi.org/10.1002/pros.23985 10.1002/pros.23985]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32364250 18]. | ||
#Bekes K, Mitulović G, Meißner N, Resch U, Gruber R, (2020) "Saliva proteomic patterns in patients with molar incisor hypomineralization." <i>Sci Rep</i> <b>10</b>(1):7560; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32371984 32371984]; doi: [https://dx.doi.org/10.1038/s41598-020-64614-z 10.1038/s41598-020-64614-z]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32371984 10]. | #Bekes K, Mitulović G, Meißner N, Resch U, Gruber R, (2020) "Saliva proteomic patterns in patients with molar incisor hypomineralization." <i>Sci Rep</i> <b>10</b>(1):7560; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32371984 32371984]; doi: [https://dx.doi.org/10.1038/s41598-020-64614-z 10.1038/s41598-020-64614-z]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32371984 10]. | ||
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#Bansal P, Madlung J, Schaaf K, Macek B, Bono F, (2020) "An interaction network of RNA-binding proteins involved in Drosophila oogenesis." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32554711 32554711]; doi: [https://dx.doi.org/10.1074/mcp.RA119.001912 10.1074/mcp.RA119.001912]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32554711 24]. | #Bansal P, Madlung J, Schaaf K, Macek B, Bono F, (2020) "An interaction network of RNA-binding proteins involved in Drosophila oogenesis." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32554711 32554711]; doi: [https://dx.doi.org/10.1074/mcp.RA119.001912 10.1074/mcp.RA119.001912]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32554711 24]. | ||
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#Zecha J, Lee CY, Bayer FP, Meng C, Grass V, Zerweck J, Schnatbaum K, Michler T, Pichlmair A, Ludwig C, Kuster B, (2020) "Data, reagents, assays and merits of proteomics for SARS-CoV-2 research and testing." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32591346 32591346]; doi: [https://dx.doi.org/10.1074/mcp.RA120.002164 10.1074/mcp.RA120.002164]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32591346 96]. | #Zecha J, Lee CY, Bayer FP, Meng C, Grass V, Zerweck J, Schnatbaum K, Michler T, Pichlmair A, Ludwig C, Kuster B, (2020) "Data, reagents, assays and merits of proteomics for SARS-CoV-2 research and testing." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32591346 32591346]; doi: [https://dx.doi.org/10.1074/mcp.RA120.002164 10.1074/mcp.RA120.002164]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32591346 96]. | ||
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#Chen Q, Samidurai A, Thompson J, Hu Y, Das A, Willard B, Lesnefsky EJ, (2020) "Endoplasmic reticulum stress-mediated mitochondrial dysfunction in aged hearts." <i>Biochim Biophys Acta Mol Basis Dis</i> <b>1866</b>(11):165899; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32698045 32698045]; doi: [https://dx.doi.org/10.1016/j.bbadis.2020.165899 10.1016/j.bbadis.2020.165899]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32698045 18]. | #Chen Q, Samidurai A, Thompson J, Hu Y, Das A, Willard B, Lesnefsky EJ, (2020) "Endoplasmic reticulum stress-mediated mitochondrial dysfunction in aged hearts." <i>Biochim Biophys Acta Mol Basis Dis</i> <b>1866</b>(11):165899; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32698045 32698045]; doi: [https://dx.doi.org/10.1016/j.bbadis.2020.165899 10.1016/j.bbadis.2020.165899]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32698045 18]. | ||
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#Steiner G, Marban-Doran C, Langer J, Pimenova T, Duran-Pacheco G, Sauter D, Langenkamp A, Solier C, Singer T, Bray-French K, Ducret A, (2020) "Enabling Routine MHC-II-Associated Peptide Proteomics for Risk Assessment of Drug-Induced Immunogenicity." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32786679 32786679]; doi: [https://dx.doi.org/10.1021/acs.jproteome.0c00309 10.1021/acs.jproteome.0c00309]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32786679 162]. | #Steiner G, Marban-Doran C, Langer J, Pimenova T, Duran-Pacheco G, Sauter D, Langenkamp A, Solier C, Singer T, Bray-French K, Ducret A, (2020) "Enabling Routine MHC-II-Associated Peptide Proteomics for Risk Assessment of Drug-Induced Immunogenicity." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32786679 32786679]; doi: [https://dx.doi.org/10.1021/acs.jproteome.0c00309 10.1021/acs.jproteome.0c00309]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32786679 162]. | ||
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#Kirak O, Ke E, Yang KY, Schwarz A, Plate L, Nham A, Abadejos JR, Valencia A, Wiseman RL, Lui KO, Ku M, (2020) "Premature Activation of Immune Transcription Programs in Autoimmune-Predisposed Mouse Embryonic Stem Cells and Blastocysts." <i>Int J Mol Sci</i> <b>21</b>(16):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32796510 32796510]; doi: [https://dx.doi.org/10.3390/ijms21165743 10.3390/ijms21165743]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32796510 1]. | #Kirak O, Ke E, Yang KY, Schwarz A, Plate L, Nham A, Abadejos JR, Valencia A, Wiseman RL, Lui KO, Ku M, (2020) "Premature Activation of Immune Transcription Programs in Autoimmune-Predisposed Mouse Embryonic Stem Cells and Blastocysts." <i>Int J Mol Sci</i> <b>21</b>(16):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/32796510 32796510]; doi: [https://dx.doi.org/10.3390/ijms21165743 10.3390/ijms21165743]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32796510 1]. | ||
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#Leng L, Cao R, Ma J, Mou D, Zhu Y, Li W, Lv L, Gao D, Zhang S, Gong F, Zhao L, Qiu B, Xiang H, Hu Z, Feng Y, Dai Y, Zhao J, Wu Z, Li H, Zhong W, (2020) "Pathological features of COVID-19-associated lung injury: a preliminary proteomics report based on clinical samples." <i>Signal Transduct Target Ther</i> <b>5</b>(1):240; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33060566 33060566]; doi: [https://dx.doi.org/10.1038/s41392-020-00355-9 10.1038/s41392-020-00355-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33060566 13]. | #Leng L, Cao R, Ma J, Mou D, Zhu Y, Li W, Lv L, Gao D, Zhang S, Gong F, Zhao L, Qiu B, Xiang H, Hu Z, Feng Y, Dai Y, Zhao J, Wu Z, Li H, Zhong W, (2020) "Pathological features of COVID-19-associated lung injury: a preliminary proteomics report based on clinical samples." <i>Signal Transduct Target Ther</i> <b>5</b>(1):240; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33060566 33060566]; doi: [https://dx.doi.org/10.1038/s41392-020-00355-9 10.1038/s41392-020-00355-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33060566 13]. | ||
- | + | #Tijms BM, Gobom J, Reus L, Jansen I, Hong S, Dobricic V, Kilpert F, Ten Kate M, Barkhof F, Tsolaki M, Verhey FRJ, Popp J, Martinez-Lage P, Vandenberghe R, Lleó A, Molinuevo JL, Engelborghs S, Bertram L, Lovestone S, Streffer J, Vos S, Bos I, Alzheimer’s Disease Neuroimaging Initiative (ADNI)., Blennow K, Scheltens P, Teunissen CE, Zetterberg H, Visser PJ, (2020) "Pathophysiological subtypes of Alzheimer's disease based on cerebrospinal fluid proteomics." <i>Brain</i> <b>143</b>(12):3776–3792; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33439986 33439986]; doi: [https://dx.doi.org/10.1093/brain/awaa325 10.1093/brain/awaa325]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33439986 36]. | |
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- | #Tijms BM, Gobom J, Reus L, Jansen I, Hong S, Dobricic V, Kilpert F, Ten Kate M, Barkhof F, Tsolaki M, Verhey FRJ, Popp J, Martinez-Lage P, Vandenberghe R, Lleó A, Molinuevo JL, Engelborghs S, Bertram L, Lovestone S, Streffer J, Vos S, Bos I, Alzheimer’s Disease Neuroimaging Initiative (ADNI)., Blennow K, Scheltens P, Teunissen CE, Zetterberg H, Visser PJ, (2020) "Pathophysiological subtypes of Alzheimer's disease based on cerebrospinal fluid proteomics." <i>Brain</i> <b>143</b>(12):3776–3792; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33439986 33439986]; doi: [https://dx.doi.org/10.1093/brain/awaa325 10.1093/brain/awaa325]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33439986 | + | |
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#Lobato-Gil S, Heidelberger JB, Maghames C, Bailly A, Brunello L, Rodriguez MS, Beli P, Xirodimas DP, (2021) "Proteome-wide identification of NEDD8 modification sites reveals distinct proteomes for canonical and atypical NEDDylation." <i>Cell Rep</i> <b>34</b>(3):108635; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33472076 33472076]; doi: [https://dx.doi.org/10.1016/j.celrep.2020.108635 10.1016/j.celrep.2020.108635]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33472076 24]. | #Lobato-Gil S, Heidelberger JB, Maghames C, Bailly A, Brunello L, Rodriguez MS, Beli P, Xirodimas DP, (2021) "Proteome-wide identification of NEDD8 modification sites reveals distinct proteomes for canonical and atypical NEDDylation." <i>Cell Rep</i> <b>34</b>(3):108635; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33472076 33472076]; doi: [https://dx.doi.org/10.1016/j.celrep.2020.108635 10.1016/j.celrep.2020.108635]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33472076 24]. | ||
- | + | #Del Favero G, Janker L, Neuditschko B, Hohenbichler J, Kiss E, Woelflingseder L, Gerner C, Marko D, (2021) "Exploring the dermotoxicity of the mycotoxin deoxynivalenol: combined morphologic and proteomic profiling of human epidermal cells reveals alteration of lipid biosynthesis machinery and membrane structural integrity relevant for skin barrier function." <i>Arch Toxicol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/33890134 33890134]; doi: [https://dx.doi.org/10.1007/s00204-021-03042-y 10.1007/s00204-021-03042-y]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33890134 58]. | |
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GPMDB was originally constructed to serve as a reference work for all publicly available proteomics generated using tandem mass spectrometry. Public data is downloaded and reanalyzed using the current version of X! Tandem. The result files generated by the reanalysis and the relevant metadata are imported into the database and made available through the associated web site, ftp site and REST interfaces.
Contents |
The following public data repositories are checked daily for new suitable raw data for reanalysis:
Data made available from specific large projects, such as CPTAC or the Human Proteome Atlas, are also included when they are made available. Every effort is made so that reanalyzed results from all data sources are made available within 48 hours of their being released. In addition, data from lab web sites, ftp sites and direct contributions through the GPM sites made available to researchers are imported into GPMDB as part of a daily incremental update process.
GPMDB has been in operation since Jan. 1, 2004. Several large data source repositories have come into existence and ceased activity in the period since that time. All of the data from those repositories (e.g., TRANCHE, Peptidome) were reanalyzed and stored in GPMDB and they are still available even though the source repository sites are no longer active.
Simply because data is made available does not mean that it will be included in GPMDB. The data must be approved our quality control AI for its initial acceptance and it may be rejected subsequently because of either quality or originality concerns.
CAUTION:Many datasets/papers contain serious errors in their metadata/methods sections. When using data from repositories, it is important to be skeptical of any experimental parameter (cell line, tissue type, modification reagents, quantitation methods, etc.) that may impact on your use of the data. We have corrected for as many of these errors as we could detect, but there is no way to be sure that we found them all. When attempting to analyze or reproduce results, keep in mind the likelihood that key parts of the experimental methods may have been recorded incorrectly in the associated metadata or manuscript.
The following is a list of data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list was current, as of January 1, 2024.