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#Elkon R, Loayza-Puch F, Korkmaz G, Lopes R, van Breugel PC, Bleijerveld OB, Altelaar AM, Wolf E, Lorenzin F, Eilers M, Agami R, (2015) "Myc coordinates transcription and translation to enhance transformation and suppress invasiveness." <i>EMBO Rep</i> <b>16</b>(12):1723–36; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26538417 26538417]; doi: [https://dx.doi.org/10.15252/embr.201540717 10.15252/embr.201540717]; GPMDB: [http://gpmdb.org/data/keyword/26538417 3]. | #Elkon R, Loayza-Puch F, Korkmaz G, Lopes R, van Breugel PC, Bleijerveld OB, Altelaar AM, Wolf E, Lorenzin F, Eilers M, Agami R, (2015) "Myc coordinates transcription and translation to enhance transformation and suppress invasiveness." <i>EMBO Rep</i> <b>16</b>(12):1723–36; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26538417 26538417]; doi: [https://dx.doi.org/10.15252/embr.201540717 10.15252/embr.201540717]; GPMDB: [http://gpmdb.org/data/keyword/26538417 3]. | ||
#Stewart PA, Parapatics K, Welsh EA, Müller AC, Cao H, Fang B, Koomen JM, Eschrich SA, Bennett KL, Haura EB, (2015) "A Pilot Proteogenomic Study with Data Integration Identifies MCT1 and GLUT1 as Prognostic Markers in Lung Adenocarcinoma." <i>PLoS One</i> <b>10</b>(11):e0142162; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26539827 26539827]; doi: [https://dx.doi.org/10.1371/journal.pone.0142162 10.1371/journal.pone.0142162]; GPMDB: [http://gpmdb.org/data/keyword/26539827 50]. | #Stewart PA, Parapatics K, Welsh EA, Müller AC, Cao H, Fang B, Koomen JM, Eschrich SA, Bennett KL, Haura EB, (2015) "A Pilot Proteogenomic Study with Data Integration Identifies MCT1 and GLUT1 as Prognostic Markers in Lung Adenocarcinoma." <i>PLoS One</i> <b>10</b>(11):e0142162; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26539827 26539827]; doi: [https://dx.doi.org/10.1371/journal.pone.0142162 10.1371/journal.pone.0142162]; GPMDB: [http://gpmdb.org/data/keyword/26539827 50]. | ||
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#Aurass P, Gerlach T, Becher D, Voigt B, Karste S, Bernhardt J, Riedel K, Hecker M, Flieger A, (2016) "Life Stage-specific Proteomes of Legionella pneumophila Reveal a Highly Differential Abundance of Virulence-associated Dot/Icm effectors." <i>Mol Cell Proteomics</i> <b>15</b>(1):177–200; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26545400 26545400]; doi: [https://dx.doi.org/10.1074/mcp.M115.053579 10.1074/mcp.M115.053579]; GPMDB: [http://gpmdb.org/data/keyword/26545400 209]. | #Aurass P, Gerlach T, Becher D, Voigt B, Karste S, Bernhardt J, Riedel K, Hecker M, Flieger A, (2016) "Life Stage-specific Proteomes of Legionella pneumophila Reveal a Highly Differential Abundance of Virulence-associated Dot/Icm effectors." <i>Mol Cell Proteomics</i> <b>15</b>(1):177–200; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26545400 26545400]; doi: [https://dx.doi.org/10.1074/mcp.M115.053579 10.1074/mcp.M115.053579]; GPMDB: [http://gpmdb.org/data/keyword/26545400 209]. | ||
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#Dimayacyac-Esleta BR, Tsai CF, Kitata RB, Lin PY, Choong WK, Lin TD, Wang YT, Weng SH, Yang PC, Arco SD, Sung TY, Chen YJ, (2015) "Rapid High-pH Reverse Phase StageTip for Sensitive Small-Scale Membrane Proteomic Profiling." <i>Anal Chem</i> <b>87</b>(24):12016–23; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26554430 26554430]; doi: [https://dx.doi.org/10.1021/acs.analchem.5b03639 10.1021/acs.analchem.5b03639]; GPMDB: [http://gpmdb.org/data/keyword/26554430 13]. | #Dimayacyac-Esleta BR, Tsai CF, Kitata RB, Lin PY, Choong WK, Lin TD, Wang YT, Weng SH, Yang PC, Arco SD, Sung TY, Chen YJ, (2015) "Rapid High-pH Reverse Phase StageTip for Sensitive Small-Scale Membrane Proteomic Profiling." <i>Anal Chem</i> <b>87</b>(24):12016–23; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26554430 26554430]; doi: [https://dx.doi.org/10.1021/acs.analchem.5b03639 10.1021/acs.analchem.5b03639]; GPMDB: [http://gpmdb.org/data/keyword/26554430 13]. | ||
#Kito K, Ito H, Nohara T, Ohnishi M, Ishibashi Y, Takeda D, (2016) "Yeast Interspecies Comparative Proteomics Reveals Divergence in Expression Profiles and Provides Insights into Proteome Resource Allocation and Evolutionary Roles of Gene Duplication." <i>Mol Cell Proteomics</i> <b>15</b>(1):218–35; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26560065 26560065]; doi: [https://dx.doi.org/10.1074/mcp.M115.051854 10.1074/mcp.M115.051854]; GPMDB: [http://gpmdb.org/data/keyword/26560065 150]. | #Kito K, Ito H, Nohara T, Ohnishi M, Ishibashi Y, Takeda D, (2016) "Yeast Interspecies Comparative Proteomics Reveals Divergence in Expression Profiles and Provides Insights into Proteome Resource Allocation and Evolutionary Roles of Gene Duplication." <i>Mol Cell Proteomics</i> <b>15</b>(1):218–35; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26560065 26560065]; doi: [https://dx.doi.org/10.1074/mcp.M115.051854 10.1074/mcp.M115.051854]; GPMDB: [http://gpmdb.org/data/keyword/26560065 150]. | ||
#Zhao Y, Valbuena G, Walker DH, Gazi M, Hidalgo M, DeSousa R, Oteo JA, Goez Y, Brasier AR, (2016) "Endothelial Cell Proteomic Response to Rickettsia conorii Infection Reveals Activation of the Janus Kinase (JAK)-Signal Transducer and Activator of Transcription (STAT)-Inferferon Stimulated Gene (ISG)15 Pathway and Reprogramming Plasma Membrane Integrin/Cadherin Signaling." <i>Mol Cell Proteomics</i> <b>15</b>(1):289–304; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26560068 26560068]; doi: [https://dx.doi.org/10.1074/mcp.M115.054361 10.1074/mcp.M115.054361]; GPMDB: [http://gpmdb.org/data/keyword/26560068 7]. | #Zhao Y, Valbuena G, Walker DH, Gazi M, Hidalgo M, DeSousa R, Oteo JA, Goez Y, Brasier AR, (2016) "Endothelial Cell Proteomic Response to Rickettsia conorii Infection Reveals Activation of the Janus Kinase (JAK)-Signal Transducer and Activator of Transcription (STAT)-Inferferon Stimulated Gene (ISG)15 Pathway and Reprogramming Plasma Membrane Integrin/Cadherin Signaling." <i>Mol Cell Proteomics</i> <b>15</b>(1):289–304; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26560068 26560068]; doi: [https://dx.doi.org/10.1074/mcp.M115.054361 10.1074/mcp.M115.054361]; GPMDB: [http://gpmdb.org/data/keyword/26560068 7]. | ||
#Sun S, Shah P, Eshghi ST, Yang W, Trikannad N, Yang S, Chen L, Aiyetan P, Höti N, Zhang Z, Chan DW, Zhang H, (2016) "Comprehensive analysis of protein glycosylation by solid-phase extraction of N-linked glycans and glycosite-containing peptides." <i>Nat Biotechnol</i> <b>34</b>(1):84–8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26571101 26571101]; doi: [https://dx.doi.org/10.1038/nbt.3403 10.1038/nbt.3403]; GPMDB: [http://gpmdb.org/data/keyword/26571101 55]. | #Sun S, Shah P, Eshghi ST, Yang W, Trikannad N, Yang S, Chen L, Aiyetan P, Höti N, Zhang Z, Chan DW, Zhang H, (2016) "Comprehensive analysis of protein glycosylation by solid-phase extraction of N-linked glycans and glycosite-containing peptides." <i>Nat Biotechnol</i> <b>34</b>(1):84–8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26571101 26571101]; doi: [https://dx.doi.org/10.1038/nbt.3403 10.1038/nbt.3403]; GPMDB: [http://gpmdb.org/data/keyword/26571101 55]. | ||
- | #Wagner SA, Oehler H, Voigt A, Dalic D, Freiwald A, Serve H, Beli P, ( | + | #Wagner SA, Oehler H, Voigt A, Dalic D, Freiwald A, Serve H, Beli P, (2016) "ATR inhibition rewires cellular signaling networks induced by replication stress." <i>Proteomics</i> <b>16</b>(3):402–16; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26572502 26572502]; doi: [https://dx.doi.org/10.1002/pmic.201500172 10.1002/pmic.201500172]; GPMDB: [http://gpmdb.org/data/keyword/26572502 20]. |
#Lichtman JS, Alsentzer E, Jaffe M, Sprockett D, Masutani E, Ikwa E, Fragiadakis GK, Clifford D, Huang BE, Sonnenburg JL, Huang KC, Elias JE, (2015) "The effect of microbial colonization on the host proteome varies by gastrointestinal location." <i>ISME J</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26574685 26574685]; doi: [https://dx.doi.org/10.1038/ismej.2015.187 10.1038/ismej.2015.187]; GPMDB: [http://gpmdb.org/data/keyword/26574685 45]. | #Lichtman JS, Alsentzer E, Jaffe M, Sprockett D, Masutani E, Ikwa E, Fragiadakis GK, Clifford D, Huang BE, Sonnenburg JL, Huang KC, Elias JE, (2015) "The effect of microbial colonization on the host proteome varies by gastrointestinal location." <i>ISME J</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26574685 26574685]; doi: [https://dx.doi.org/10.1038/ismej.2015.187 10.1038/ismej.2015.187]; GPMDB: [http://gpmdb.org/data/keyword/26574685 45]. | ||
#Latos PA, Sienerth AR, Murray A, Senner CE, Muto M, Ikawa M, Oxley D, Burge S, Cox BJ, Hemberger M, (2015) "Elf5-centered transcription factor hub controls trophoblast stem cell self-renewal and differentiation through stoichiometry-sensitive shifts in target gene networks." <i>Genes Dev</i> <b>29</b>(23):2435–48; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26584622 26584622]; doi: [https://dx.doi.org/10.1101/gad.268821.115 10.1101/gad.268821.115]; GPMDB: [http://gpmdb.org/data/keyword/26584622 6]. | #Latos PA, Sienerth AR, Murray A, Senner CE, Muto M, Ikawa M, Oxley D, Burge S, Cox BJ, Hemberger M, (2015) "Elf5-centered transcription factor hub controls trophoblast stem cell self-renewal and differentiation through stoichiometry-sensitive shifts in target gene networks." <i>Genes Dev</i> <b>29</b>(23):2435–48; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26584622 26584622]; doi: [https://dx.doi.org/10.1101/gad.268821.115 10.1101/gad.268821.115]; GPMDB: [http://gpmdb.org/data/keyword/26584622 6]. | ||
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#Padden J, Ahrens M, Kälsch J, Bertram S, Megger DA, Bracht T, Eisenacher M, Kocabayoglu P, Meyer HE, Sipos B, Baba HA, Sitek B, (2015) "Immunohistochemical Markers Distinguishing Cholangiocellular Carcinoma from Pancreatic Ductal Adenocarcinoma Discovered by Proteomic Analysis of Microdissected Cells." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26644413 26644413]; doi: [https://dx.doi.org/10.1074/mcp.M115.054585 10.1074/mcp.M115.054585]; GPMDB: [http://gpmdb.org/data/keyword/26644413 66]. | #Padden J, Ahrens M, Kälsch J, Bertram S, Megger DA, Bracht T, Eisenacher M, Kocabayoglu P, Meyer HE, Sipos B, Baba HA, Sitek B, (2015) "Immunohistochemical Markers Distinguishing Cholangiocellular Carcinoma from Pancreatic Ductal Adenocarcinoma Discovered by Proteomic Analysis of Microdissected Cells." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26644413 26644413]; doi: [https://dx.doi.org/10.1074/mcp.M115.054585 10.1074/mcp.M115.054585]; GPMDB: [http://gpmdb.org/data/keyword/26644413 66]. | ||
#Xu J, Gao J, Yu C, He H, Yang Y, Figeys D, Zhou H, (2016) "Development of Online pH Gradient-Eluted Strong Cation Exchange Nanoelectrospray-Tandem Mass Spectrometry for Proteomic Analysis Facilitating Basic and Histidine-Containing Peptides Identification." <i>Anal Chem</i> <b>88</b>(1):583–91; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26646553 26646553]; doi: [https://dx.doi.org/10.1021/acs.analchem.5b04000 10.1021/acs.analchem.5b04000]; GPMDB: [http://gpmdb.org/data/keyword/26646553 6]. | #Xu J, Gao J, Yu C, He H, Yang Y, Figeys D, Zhou H, (2016) "Development of Online pH Gradient-Eluted Strong Cation Exchange Nanoelectrospray-Tandem Mass Spectrometry for Proteomic Analysis Facilitating Basic and Histidine-Containing Peptides Identification." <i>Anal Chem</i> <b>88</b>(1):583–91; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26646553 26646553]; doi: [https://dx.doi.org/10.1021/acs.analchem.5b04000 10.1021/acs.analchem.5b04000]; GPMDB: [http://gpmdb.org/data/keyword/26646553 6]. | ||
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#Farina F, Gaillard J, Guérin C, Couté Y, Sillibourne J, Blanchoin L, Théry M, (2016) "The centrosome is an actin-organizing centre." <i>Nat Cell Biol</i> <b>18</b>(1):65–75; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26655833 26655833]; doi: [https://dx.doi.org/10.1038/ncb3285 10.1038/ncb3285]; GPMDB: [http://gpmdb.org/data/keyword/26655833 2]. | #Farina F, Gaillard J, Guérin C, Couté Y, Sillibourne J, Blanchoin L, Théry M, (2016) "The centrosome is an actin-organizing centre." <i>Nat Cell Biol</i> <b>18</b>(1):65–75; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26655833 26655833]; doi: [https://dx.doi.org/10.1038/ncb3285 10.1038/ncb3285]; GPMDB: [http://gpmdb.org/data/keyword/26655833 2]. | ||
#Giguère SS, Guise AJ, Jean Beltran PM, Joshi PM, Greco TM, Quach OL, Kong J, Cristea IM, (2015) "The proteomic profile of deleted in breast cancer 1 (DBC1) interactions points to a multi-faceted regulation of gene expression." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26657080 26657080]; doi: [https://dx.doi.org/10.1074/mcp.M115.054619 10.1074/mcp.M115.054619]; GPMDB: [http://gpmdb.org/data/keyword/26657080 109]. | #Giguère SS, Guise AJ, Jean Beltran PM, Joshi PM, Greco TM, Quach OL, Kong J, Cristea IM, (2015) "The proteomic profile of deleted in breast cancer 1 (DBC1) interactions points to a multi-faceted regulation of gene expression." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26657080 26657080]; doi: [https://dx.doi.org/10.1074/mcp.M115.054619 10.1074/mcp.M115.054619]; GPMDB: [http://gpmdb.org/data/keyword/26657080 109]. | ||
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#Bigenzahn JW, Fauster A, Rebsamen M, Kandasamy RK, Scorzoni S, Vladimer GI, Mueller AC, Gstaiger M, Zuber J, Bennett KL, Superti-Furga G, (2015) "An inducible retroviral expression system for tandem affinity purification mass-spectrometry-based proteomics identifies MLKL as an HSP90 client." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26714523 26714523]; doi: [https://dx.doi.org/10.1074/mcp.O115.055350 10.1074/mcp.O115.055350]; GPMDB: [http://gpmdb.org/data/keyword/26714523 16]. | #Bigenzahn JW, Fauster A, Rebsamen M, Kandasamy RK, Scorzoni S, Vladimer GI, Mueller AC, Gstaiger M, Zuber J, Bennett KL, Superti-Furga G, (2015) "An inducible retroviral expression system for tandem affinity purification mass-spectrometry-based proteomics identifies MLKL as an HSP90 client." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26714523 26714523]; doi: [https://dx.doi.org/10.1074/mcp.O115.055350 10.1074/mcp.O115.055350]; GPMDB: [http://gpmdb.org/data/keyword/26714523 16]. | ||
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#Laumont CM, Daouda T, Laverdure JP, Bonneil É, Caron-Lizotte O, Hardy MP, Granados DP, Durette C, Lemieux S, Thibault P, Perreault C, (2016) "Global proteogenomic analysis of human MHC class I-associated peptides derived from non-canonical reading frames." <i>Nat Commun</i> <b>7</b>:10238; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26728094 26728094]; doi: [https://dx.doi.org/10.1038/ncomms10238 10.1038/ncomms10238]; GPMDB: [http://gpmdb.org/data/keyword/26728094 35]. | #Laumont CM, Daouda T, Laverdure JP, Bonneil É, Caron-Lizotte O, Hardy MP, Granados DP, Durette C, Lemieux S, Thibault P, Perreault C, (2016) "Global proteogenomic analysis of human MHC class I-associated peptides derived from non-canonical reading frames." <i>Nat Commun</i> <b>7</b>:10238; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26728094 26728094]; doi: [https://dx.doi.org/10.1038/ncomms10238 10.1038/ncomms10238]; GPMDB: [http://gpmdb.org/data/keyword/26728094 35]. | ||
#Guo Z, Kong Q, Liu C, Zhang S, Zou L, Yan F, Whitmire JK, Xiong Y, Chen X, Wan YY, (2016) "DCAF1 controls T-cell function via p53-dependent and -independent mechanisms." <i>Nat Commun</i> <b>7</b>:10307; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26728942 26728942]; doi: [https://dx.doi.org/10.1038/ncomms10307 10.1038/ncomms10307]; GPMDB: [http://gpmdb.org/data/keyword/26728942 120]. | #Guo Z, Kong Q, Liu C, Zhang S, Zou L, Yan F, Whitmire JK, Xiong Y, Chen X, Wan YY, (2016) "DCAF1 controls T-cell function via p53-dependent and -independent mechanisms." <i>Nat Commun</i> <b>7</b>:10307; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26728942 26728942]; doi: [https://dx.doi.org/10.1038/ncomms10307 10.1038/ncomms10307]; GPMDB: [http://gpmdb.org/data/keyword/26728942 120]. | ||
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#Christoforou A, Mulvey CM, Breckels LM, Geladaki A, Hurrell T, Hayward PC, Naake T, Gatto L, Viner R, Arias AM, Lilley KS, (2016) "A draft map of the mouse pluripotent stem cell spatial proteome." <i>Nat Commun</i> <b>7</b>:9992; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26754106 26754106]; doi: [https://dx.doi.org/10.1038/ncomms9992 10.1038/ncomms9992]; GPMDB: [http://gpmdb.org/data/keyword/26754106 2]. | #Christoforou A, Mulvey CM, Breckels LM, Geladaki A, Hurrell T, Hayward PC, Naake T, Gatto L, Viner R, Arias AM, Lilley KS, (2016) "A draft map of the mouse pluripotent stem cell spatial proteome." <i>Nat Commun</i> <b>7</b>:9992; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26754106 26754106]; doi: [https://dx.doi.org/10.1038/ncomms9992 10.1038/ncomms9992]; GPMDB: [http://gpmdb.org/data/keyword/26754106 2]. | ||
#Jin J, Tian R, Pasculescu A, Dai AY, Williton K, Taylor L, Savitski MM, Bantscheff M, Woodgett JR, Colwill K, Pawson T, (2016) "Mutational analysis of GSK3β protein kinase together with kinome-wide binding and stability studies suggest context-dependent recognition of kinases by the chaperone HSP90." <i>Mol Cell Biol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26755559 26755559]; doi: [https://dx.doi.org/10.1128/MCB.01045-15 10.1128/MCB.01045-15]; GPMDB: [http://gpmdb.org/data/keyword/26755559 17]. | #Jin J, Tian R, Pasculescu A, Dai AY, Williton K, Taylor L, Savitski MM, Bantscheff M, Woodgett JR, Colwill K, Pawson T, (2016) "Mutational analysis of GSK3β protein kinase together with kinome-wide binding and stability studies suggest context-dependent recognition of kinases by the chaperone HSP90." <i>Mol Cell Biol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26755559 26755559]; doi: [https://dx.doi.org/10.1128/MCB.01045-15 10.1128/MCB.01045-15]; GPMDB: [http://gpmdb.org/data/keyword/26755559 17]. | ||
+ | #So EC, Schroeder GN, Carson D, Mattheis C, Mousnier A, Broncel M, Tate EW, Frankel G, (2016) "The Rab-binding profiles of bacterial virulence factors during infection." <i>J Biol Chem</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26755725 26755725]; doi: [https://dx.doi.org/10.1074/jbc.M115.700930 10.1074/jbc.M115.700930]; GPMDB: [http://gpmdb.org/data/keyword/26755725 60]. | ||
#Geddes JM, Caza M, Croll D, Stoynov N, Foster LJ, Kronstad JW, (2016) "Analysis of the Protein Kinase A-Regulated Proteome of Cryptococcus neoformans Identifies a Role for the Ubiquitin-Proteasome Pathway in Capsule Formation." <i>MBio</i> <b>7</b>(1):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26758180 26758180]; doi: [https://dx.doi.org/10.1128/mBio.01862-15 10.1128/mBio.01862-15]; GPMDB: [http://gpmdb.org/data/keyword/26758180 133]. | #Geddes JM, Caza M, Croll D, Stoynov N, Foster LJ, Kronstad JW, (2016) "Analysis of the Protein Kinase A-Regulated Proteome of Cryptococcus neoformans Identifies a Role for the Ubiquitin-Proteasome Pathway in Capsule Formation." <i>MBio</i> <b>7</b>(1):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26758180 26758180]; doi: [https://dx.doi.org/10.1128/mBio.01862-15 10.1128/mBio.01862-15]; GPMDB: [http://gpmdb.org/data/keyword/26758180 133]. | ||
#Uren PJ, Bahrami-Samani E, de Araujo PR, Vogel C, Qiao M, Burns SC, Smith AD, Penalva LO, (2016) "High-throughput analyses of hnRNP H1 dissects its multi-functional aspect." <i>RNA Biol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26760575 26760575]; doi: [https://dx.doi.org/10.1080/15476286.2015.1138030 10.1080/15476286.2015.1138030]; GPMDB: [http://gpmdb.org/data/keyword/26760575 32]. | #Uren PJ, Bahrami-Samani E, de Araujo PR, Vogel C, Qiao M, Burns SC, Smith AD, Penalva LO, (2016) "High-throughput analyses of hnRNP H1 dissects its multi-functional aspect." <i>RNA Biol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26760575 26760575]; doi: [https://dx.doi.org/10.1080/15476286.2015.1138030 10.1080/15476286.2015.1138030]; GPMDB: [http://gpmdb.org/data/keyword/26760575 32]. | ||
#Neubert P, Halim A, Zauser M, Essig A, Joshi HJ, Zatorska E, Larsen IS, Loibl M, Castells-Ballester J, Aebi M, Clausen H, Strahl S, (2016) "Mapping the O-mannose glycoproteome in Saccharomyces cerevisiae." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26764011 26764011]; doi: [https://dx.doi.org/10.1074/mcp.M115.057505 10.1074/mcp.M115.057505]; GPMDB: [http://gpmdb.org/data/keyword/26764011 6]. | #Neubert P, Halim A, Zauser M, Essig A, Joshi HJ, Zatorska E, Larsen IS, Loibl M, Castells-Ballester J, Aebi M, Clausen H, Strahl S, (2016) "Mapping the O-mannose glycoproteome in Saccharomyces cerevisiae." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26764011 26764011]; doi: [https://dx.doi.org/10.1074/mcp.M115.057505 10.1074/mcp.M115.057505]; GPMDB: [http://gpmdb.org/data/keyword/26764011 6]. | ||
#Kümper S, Mardakheh FK, McCarthy A, Yeo M, Stamp GW, Paul A, Worboys J, Sadok A, Jørgensen C, Guichard S, Marshall CJ, (2016) "Rho-associated kinase (ROCK) function is essential for cell cycle progression, senescence and tumorigenesis." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26765561 26765561]; doi: [https://dx.doi.org/10.7554/eLife.12203 10.7554/eLife.12203]; GPMDB: [http://gpmdb.org/data/keyword/26765561 28]. | #Kümper S, Mardakheh FK, McCarthy A, Yeo M, Stamp GW, Paul A, Worboys J, Sadok A, Jørgensen C, Guichard S, Marshall CJ, (2016) "Rho-associated kinase (ROCK) function is essential for cell cycle progression, senescence and tumorigenesis." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26765561 26765561]; doi: [https://dx.doi.org/10.7554/eLife.12203 10.7554/eLife.12203]; GPMDB: [http://gpmdb.org/data/keyword/26765561 28]. | ||
- | #Ma Y, Gao J, Yin J, Gu L, Liu X, Chen S, Huang Q, Lu H, Yang Y, Zhou H, Wang Y, Peng Y, (2016) "Identification of a Novel Function of Adipocyte Plasma Membrane-Associated Protein (APMAP) in Gestational Diabetes Mellitus by Proteomic Analysis of Omental Adipose Tissue." <i>J Proteome Res</i> <b>15</b>(2):628– | + | #Ma Y, Gao J, Yin J, Gu L, Liu X, Chen S, Huang Q, Lu H, Yang Y, Zhou H, Wang Y, Peng Y, (2016) "Identification of a Novel Function of Adipocyte Plasma Membrane-Associated Protein (APMAP) in Gestational Diabetes Mellitus by Proteomic Analysis of Omental Adipose Tissue." <i>J Proteome Res</i> <b>15</b>(2):628–37; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26767403 26767403]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b01030 10.1021/acs.jproteome.5b01030]; GPMDB: [http://gpmdb.org/data/keyword/26767403 12]. |
#Mithoe SC, Ludwig C, Pel MJ, Cucinotta M, Casartelli A, Mbengue M, Sklenar J, Derbyshire P, Robatzek S, Pieterse CM, Aebersold R, Menke FL, (2016) "Attenuation of pattern recognition receptor signaling is mediated by a MAP kinase kinase kinase." <i>EMBO Rep</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26769563 26769563]; doi: [https://dx.doi.org/10.15252/embr.201540806 10.15252/embr.201540806]; GPMDB: [http://gpmdb.org/data/keyword/26769563 64]. | #Mithoe SC, Ludwig C, Pel MJ, Cucinotta M, Casartelli A, Mbengue M, Sklenar J, Derbyshire P, Robatzek S, Pieterse CM, Aebersold R, Menke FL, (2016) "Attenuation of pattern recognition receptor signaling is mediated by a MAP kinase kinase kinase." <i>EMBO Rep</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26769563 26769563]; doi: [https://dx.doi.org/10.15252/embr.201540806 10.15252/embr.201540806]; GPMDB: [http://gpmdb.org/data/keyword/26769563 64]. | ||
#Kwiatkowski M, Wurlitzer M, Krutilin A, Kiani P, Nimer R, Omidi M, Mannaa A, Bussmann T, Bartkowiak K, Kruber S, Uschold S, Steffen P, Lübberstedt J, Küpker N, Petersen H, Knecht R, Hansen NO, Zarrine-Afsar A, Robertson WD, Miller RJ, Schlüter H, (2016) "Homogenization of tissues via picosecond-infrared laser (PIRL) ablation: Giving a closer view on the in-vivo composition of protein species as compared to mechanical homogenization." <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26778141 26778141]; doi: [https://dx.doi.org/10.1016/j.jprot.2015.12.029 10.1016/j.jprot.2015.12.029]; GPMDB: [http://gpmdb.org/data/keyword/26778141 372]. | #Kwiatkowski M, Wurlitzer M, Krutilin A, Kiani P, Nimer R, Omidi M, Mannaa A, Bussmann T, Bartkowiak K, Kruber S, Uschold S, Steffen P, Lübberstedt J, Küpker N, Petersen H, Knecht R, Hansen NO, Zarrine-Afsar A, Robertson WD, Miller RJ, Schlüter H, (2016) "Homogenization of tissues via picosecond-infrared laser (PIRL) ablation: Giving a closer view on the in-vivo composition of protein species as compared to mechanical homogenization." <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26778141 26778141]; doi: [https://dx.doi.org/10.1016/j.jprot.2015.12.029 10.1016/j.jprot.2015.12.029]; GPMDB: [http://gpmdb.org/data/keyword/26778141 372]. | ||
#Peleg S, Feller C, Forne I, Schiller E, Sévin DC, Schauer T, Regnard C, Straub T, Prestel M, Klima C, Schmitt Nogueira M, Becker L, Klopstock T, Sauer U, Becker PB, Imhof A, Ladurner AG, (2016) "Life span extension by targeting a link between metabolism and histone acetylation in Drosophila." <i>EMBO Rep</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26781291 26781291]; doi: [https://dx.doi.org/10.15252/embr.201541132 10.15252/embr.201541132]; GPMDB: [http://gpmdb.org/data/keyword/26781291 20]. | #Peleg S, Feller C, Forne I, Schiller E, Sévin DC, Schauer T, Regnard C, Straub T, Prestel M, Klima C, Schmitt Nogueira M, Becker L, Klopstock T, Sauer U, Becker PB, Imhof A, Ladurner AG, (2016) "Life span extension by targeting a link between metabolism and histone acetylation in Drosophila." <i>EMBO Rep</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26781291 26781291]; doi: [https://dx.doi.org/10.15252/embr.201541132 10.15252/embr.201541132]; GPMDB: [http://gpmdb.org/data/keyword/26781291 20]. | ||
#Kollipara L, Buchkremer S, Weis J, Brauers E, Hoss M, Rütten S, Caviedes P, Zahedi RP, Roos A, (2016) "Proteome profiling and ultrastructural characterization of the human RCMH cell line: myoblastic properties and suitability for myopathological studies." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26781476 26781476]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00972 10.1021/acs.jproteome.5b00972]; GPMDB: [http://gpmdb.org/data/keyword/26781476 1]. | #Kollipara L, Buchkremer S, Weis J, Brauers E, Hoss M, Rütten S, Caviedes P, Zahedi RP, Roos A, (2016) "Proteome profiling and ultrastructural characterization of the human RCMH cell line: myoblastic properties and suitability for myopathological studies." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26781476 26781476]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00972 10.1021/acs.jproteome.5b00972]; GPMDB: [http://gpmdb.org/data/keyword/26781476 1]. | ||
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#Vincent D, Ezernieks V, Elkins A, Nguyen N, Moate PJ, Cocks BG, Rochfort S, (2015) "Milk Bottom-Up Proteomics: Method Optimization." <i>Front Genet</i> <b>6</b>:360; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26793233 26793233]; doi: [https://dx.doi.org/10.3389/fgene.2015.00360 10.3389/fgene.2015.00360]; GPMDB: [http://gpmdb.org/data/keyword/26793233 262]. | #Vincent D, Ezernieks V, Elkins A, Nguyen N, Moate PJ, Cocks BG, Rochfort S, (2015) "Milk Bottom-Up Proteomics: Method Optimization." <i>Front Genet</i> <b>6</b>:360; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26793233 26793233]; doi: [https://dx.doi.org/10.3389/fgene.2015.00360 10.3389/fgene.2015.00360]; GPMDB: [http://gpmdb.org/data/keyword/26793233 262]. | ||
+ | #Li Q, Lex RK, Chung H, Giovanetti SM, Ji Z, Ji H, Person MD, Kim J, Vokes SA, (2016) "NANOG binds to GLI proteins and represses Hedgehog-mediated transcription." <i>J Biol Chem</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26797124 26797124]; doi: [https://dx.doi.org/10.1074/jbc.M116.714857 10.1074/jbc.M116.714857]; GPMDB: [http://gpmdb.org/data/keyword/26797124 10]. | ||
#Schüller R, Forné I, Straub T, Schreieck A, Texier Y, Shah N, Decker TM, Cramer P, Imhof A, Eick D, (2016) "Heptad-Specific Phosphorylation of RNA Polymerase II CTD." <i>Mol Cell</i> <b>61</b>(2):305–14; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26799765 26799765]; doi: [https://dx.doi.org/10.1016/j.molcel.2015.12.003 10.1016/j.molcel.2015.12.003]; GPMDB: [http://gpmdb.org/data/keyword/26799765 209]. | #Schüller R, Forné I, Straub T, Schreieck A, Texier Y, Shah N, Decker TM, Cramer P, Imhof A, Eick D, (2016) "Heptad-Specific Phosphorylation of RNA Polymerase II CTD." <i>Mol Cell</i> <b>61</b>(2):305–14; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26799765 26799765]; doi: [https://dx.doi.org/10.1016/j.molcel.2015.12.003 10.1016/j.molcel.2015.12.003]; GPMDB: [http://gpmdb.org/data/keyword/26799765 209]. | ||
#Wojtuszkiewicz A, Schuurhuis GJ, Kessler FL, Piersma SR, Knol JC, Pham TV, Jansen G, Musters RJ, van Meerloo J, Assaraf YG, Kaspers GJ, Zweegman S, Cloos J, Jimenez CR, (2016) "Exosomes secreted by apoptosis-resistant AML blasts harbor regulatory network proteins potentially involved in antagonism of apoptosis." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26801919 26801919]; doi: [https://dx.doi.org/10.1074/mcp.M115.052944 10.1074/mcp.M115.052944]; GPMDB: [http://gpmdb.org/data/keyword/26801919 271]. | #Wojtuszkiewicz A, Schuurhuis GJ, Kessler FL, Piersma SR, Knol JC, Pham TV, Jansen G, Musters RJ, van Meerloo J, Assaraf YG, Kaspers GJ, Zweegman S, Cloos J, Jimenez CR, (2016) "Exosomes secreted by apoptosis-resistant AML blasts harbor regulatory network proteins potentially involved in antagonism of apoptosis." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26801919 26801919]; doi: [https://dx.doi.org/10.1074/mcp.M115.052944 10.1074/mcp.M115.052944]; GPMDB: [http://gpmdb.org/data/keyword/26801919 271]. | ||
+ | #Serra A, Zhu H, Gallart-Palau X, Park JE, Ho HH, Tam JP, Sze SK, (2016) "Plasma proteome coverage is increased by unique peptide recovery from sodium deoxycholate precipitate." <i>Anal Bioanal Chem</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26804737 26804737]; doi: [https://dx.doi.org/10.1007/s00216-016-9312-7 10.1007/s00216-016-9312-7]; GPMDB: [http://gpmdb.org/data/keyword/26804737 40]. | ||
#Woodford MR, Truman AW, Dunn DM, Jensen SM, Cotran R, Bullard R, Abouelleil M, Beebe K, Wolfgeher D, Wierzbicki S, Post DE, Caza T, Tsutsumi S, Panaretou B, Kron SJ, Trepel JB, Landas S, Prodromou C, Shapiro O, Stetler-Stevenson WG, Bourboulia D, Neckers L, Bratslavsky G, Mollapour M, (2016) "Mps1 Mediated Phosphorylation of Hsp90 Confers Renal Cell Carcinoma Sensitivity and Selectivity to Hsp90 Inhibitors." <i>Cell Rep</i> <b>14</b>(4):872–84; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26804907 26804907]; doi: [https://dx.doi.org/10.1016/j.celrep.2015.12.084 10.1016/j.celrep.2015.12.084]; GPMDB: [http://gpmdb.org/data/keyword/26804907 12]. | #Woodford MR, Truman AW, Dunn DM, Jensen SM, Cotran R, Bullard R, Abouelleil M, Beebe K, Wolfgeher D, Wierzbicki S, Post DE, Caza T, Tsutsumi S, Panaretou B, Kron SJ, Trepel JB, Landas S, Prodromou C, Shapiro O, Stetler-Stevenson WG, Bourboulia D, Neckers L, Bratslavsky G, Mollapour M, (2016) "Mps1 Mediated Phosphorylation of Hsp90 Confers Renal Cell Carcinoma Sensitivity and Selectivity to Hsp90 Inhibitors." <i>Cell Rep</i> <b>14</b>(4):872–84; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26804907 26804907]; doi: [https://dx.doi.org/10.1016/j.celrep.2015.12.084 10.1016/j.celrep.2015.12.084]; GPMDB: [http://gpmdb.org/data/keyword/26804907 12]. | ||
#Voelker-Albert MC, Pusch MC, Fedisch A, Schilcher P, Schmidt A, Imhof A, (2016) "A quantitative proteomic analysis of in vitro assembled chromatin." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26811354 26811354]; doi: [https://dx.doi.org/10.1074/mcp.M115.053553 10.1074/mcp.M115.053553]; GPMDB: [http://gpmdb.org/data/keyword/26811354 12]. | #Voelker-Albert MC, Pusch MC, Fedisch A, Schilcher P, Schmidt A, Imhof A, (2016) "A quantitative proteomic analysis of in vitro assembled chromatin." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26811354 26811354]; doi: [https://dx.doi.org/10.1074/mcp.M115.053553 10.1074/mcp.M115.053553]; GPMDB: [http://gpmdb.org/data/keyword/26811354 12]. | ||
- | #da Silva BF, Meng C, Helm D, Pachl F, Schiller J, Ibrahim E, Lynne CM, Brackett NL, Bertolla R, Kuster B, (2016) "Towards understanding male infertility after spinal cord injury using quantitative proteomics." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26814186 26814186]; doi: [https://dx.doi.org/10.1074/mcp.M115.052175 10.1074/mcp.M115.052175]; GPMDB: [http://gpmdb.org/data/keyword/26814186 | + | #da Silva BF, Meng C, Helm D, Pachl F, Schiller J, Ibrahim E, Lynne CM, Brackett NL, Bertolla R, Kuster B, (2016) "Towards understanding male infertility after spinal cord injury using quantitative proteomics." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26814186 26814186]; doi: [https://dx.doi.org/10.1074/mcp.M115.052175 10.1074/mcp.M115.052175]; GPMDB: [http://gpmdb.org/data/keyword/26814186 504]. |
+ | #Coman C, Solari FA, Hentschel A, Sickmann A, Zahedi RP, Ahrends R, (2016) "SIMPLEX: a combinatorial multimolecular omics approach for systems biology." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26814187 26814187]; doi: [https://dx.doi.org/10.1074/mcp.M115.053702 10.1074/mcp.M115.053702]; GPMDB: [http://gpmdb.org/data/keyword/26814187 68]. | ||
#Bigaud E, Corrales FJ, (2016) "Methylthioadenosine regulates liver cells proteome and methylproteome. Implications in liver biology and disease." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26819315 26819315]; doi: [https://dx.doi.org/10.1074/mcp.M115.055772 10.1074/mcp.M115.055772]; GPMDB: [http://gpmdb.org/data/keyword/26819315 3]. | #Bigaud E, Corrales FJ, (2016) "Methylthioadenosine regulates liver cells proteome and methylproteome. Implications in liver biology and disease." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26819315 26819315]; doi: [https://dx.doi.org/10.1074/mcp.M115.055772 10.1074/mcp.M115.055772]; GPMDB: [http://gpmdb.org/data/keyword/26819315 3]. | ||
- | #Lichtman JS, Ferreyra JA, Ng KM, Smits SA, Sonnenburg JL, Elias JE, (2016) "Host-Microbiota Interactions in the Pathogenesis of Antibiotic-Associated Diseases." <i>Cell Rep</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26832403 26832403]; doi: [https://dx.doi.org/10.1016/j.celrep.2016.01.009 10.1016/j.celrep.2016.01.009]; GPMDB: [http://gpmdb.org/data/keyword/26832403 | + | #Chen Z, Tran M, Tang M, Wang W, Gong Z, Chen J, (2016) "Proteomic Analysis Reveals a Novel MutS Partner Involved in Mismatch Repair Pathway." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26828036 26828036]; doi: [https://dx.doi.org/10.1074/mcp.M115.056093 10.1074/mcp.M115.056093]; GPMDB: [http://gpmdb.org/data/keyword/26828036 22]. |
+ | #Lichtman JS, Ferreyra JA, Ng KM, Smits SA, Sonnenburg JL, Elias JE, (2016) "Host-Microbiota Interactions in the Pathogenesis of Antibiotic-Associated Diseases." <i>Cell Rep</i> <b>14</b>(5):1049–61; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26832403 26832403]; doi: [https://dx.doi.org/10.1016/j.celrep.2016.01.009 10.1016/j.celrep.2016.01.009]; GPMDB: [http://gpmdb.org/data/keyword/26832403 486]. | ||
#Horton ER, Humphries JD, Stutchbury B, Jacquemet G, Ballestrem C, Barry ST, Humphries MJ, (2016) "Modulation of FAK and Src adhesion signaling occurs independently of adhesion complex composition." <i>J Cell Biol</i> <b>212</b>(3):349–64; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26833789 26833789]; doi: [https://dx.doi.org/10.1083/jcb.201508080 10.1083/jcb.201508080]; GPMDB: [http://gpmdb.org/data/keyword/26833789 9]. | #Horton ER, Humphries JD, Stutchbury B, Jacquemet G, Ballestrem C, Barry ST, Humphries MJ, (2016) "Modulation of FAK and Src adhesion signaling occurs independently of adhesion complex composition." <i>J Cell Biol</i> <b>212</b>(3):349–64; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26833789 26833789]; doi: [https://dx.doi.org/10.1083/jcb.201508080 10.1083/jcb.201508080]; GPMDB: [http://gpmdb.org/data/keyword/26833789 9]. | ||
#Zhang P, Kirby D, Dufresne C, Chen Y, Turner R, Ferri S, Edward DP, Van Eyk JE, Semba RD, (2016) "Defining the proteome of human iris, ciliary body, retinal pigment epithelium, and choroid." <i>Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26834087 26834087]; doi: [https://dx.doi.org/10.1002/pmic.201500188 10.1002/pmic.201500188]; GPMDB: [http://gpmdb.org/data/keyword/26834087 120]. | #Zhang P, Kirby D, Dufresne C, Chen Y, Turner R, Ferri S, Edward DP, Van Eyk JE, Semba RD, (2016) "Defining the proteome of human iris, ciliary body, retinal pigment epithelium, and choroid." <i>Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26834087 26834087]; doi: [https://dx.doi.org/10.1002/pmic.201500188 10.1002/pmic.201500188]; GPMDB: [http://gpmdb.org/data/keyword/26834087 120]. | ||
+ | #Long B, Muhamad R, Yan G, Yu J, Fan Q, Wang Z, Li X, Purnomoadi A, Achmadi J, Yan X, (2016) "Quantitative proteomics analysis reveals glutamine deprivation activates fatty acid β-oxidation pathway in HepG2 cells." <i>Amino Acids</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26837383 26837383]; doi: [https://dx.doi.org/10.1007/s00726-016-2182-7 10.1007/s00726-016-2182-7]; GPMDB: [http://gpmdb.org/data/keyword/26837383 1]. | ||
+ | #Iwamoto N, D'Alessandro LA, Depner S, Hahn B, Kramer BA, Lucarelli P, Vlasov A, Stepath M, Böhm ME, Deharde D, Damm G, Seehofer D, Lehmann WD, Klingmüller U, Schilling M, (2016) "Context-specific flow through the MEK/ERK module produces cell- and ligand-specific patterns of ERK single and double phosphorylation." <i>Sci Signal</i> <b>9</b>(413):ra13; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26838549 26838549]; doi: [https://dx.doi.org/10.1126/scisignal.aab1967 10.1126/scisignal.aab1967]; GPMDB: [http://gpmdb.org/data/keyword/26838549 66]. | ||
+ | #Huang H, Yoo CY, Bindbeutel R, Goldsworthy J, Tielking A, Alvarez S, Naldrett MJ, Evans BS, Chen M, Nusinow DA, (2016) "PCH1 integrates circadian and light-signaling pathways to control photoperiod-responsive growth in Arabidopsis." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26839287 26839287]; doi: [https://dx.doi.org/10.7554/eLife.13292 10.7554/eLife.13292]; GPMDB: [http://gpmdb.org/data/keyword/26839287 9]. | ||
+ | #Thorpe CT, Peffers MJ, Simpson D, Halliwell E, Screen HR, Clegg PD, (2016) "Anatomical heterogeneity of tendon: Fascicular and interfascicular tendon compartments have distinct proteomic composition." <i>Sci Rep</i> <b>6</b>:20455; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26842662 26842662]; doi: [https://dx.doi.org/10.1038/srep20455 10.1038/srep20455]; GPMDB: [http://gpmdb.org/data/keyword/26842662 20]. | ||
+ | #Chidiac R, Zhang Y, Tessier S, Faubert D, Delisle C, Gratton JP, (2016) "Comparative phosphoproteomics analysis of VEGF and Angiopoietin-1 signaling reveals ZO-1 as a critical regulator of endothelial cell proliferation." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26846344 26846344]; doi: [https://dx.doi.org/10.1074/mcp.M115.053298 10.1074/mcp.M115.053298]; GPMDB: [http://gpmdb.org/data/keyword/26846344 13]. | ||
+ | #Meierhofer D, Halbach M, Sen NE, Gispert S, Auburger G, (2016) "Atxn2-Knock-Out mice show branched chain amino acids and fatty acids pathway alterations." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26850065 26850065]; doi: [https://dx.doi.org/10.1074/mcp.M115.056770 10.1074/mcp.M115.056770]; GPMDB: [http://gpmdb.org/data/keyword/26850065 48]. | ||
+ | #Gielisch I, Hardt C, Wittig I, Meierhofer D, (2016) "An impaired respiratory electron chain triggers down-regulation of the energy metabolism and de-ubiquitination of solute carrier amino acid transporters." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26852163 26852163]; doi: [https://dx.doi.org/10.1074/mcp.M115.053181 10.1074/mcp.M115.053181]; GPMDB: [http://gpmdb.org/data/keyword/26852163 8]. | ||
+ | #Billing AM, Ben Hamidane H, Dib SS, Cotton RJ, Bhagwat AM, Kumar P, Hayat S, Yousri NA, Goswami N, Suhre K, Rafii A, Graumann J, (2016) "Comprehensive transcriptomic and proteomic characterization of human mesenchymal stem cells reveals source specific cellular markers." <i>Sci Rep</i> <b>6</b>:21507; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26857143 26857143]; doi: [https://dx.doi.org/10.1038/srep21507 10.1038/srep21507]; GPMDB: [http://gpmdb.org/data/keyword/26857143 4]. |
GPMDB was originally constructed to serve as a reference work for all publicly available proteomics generated using tandem mass spectrometry. Public data is downloaded and reanalyzed using the current version of X! Tandem. The result files generated by the reanalysis and the relevant metadata are imported into the database and made available through the associated web site, ftp site and REST interfaces.
Contents |
The following public data repositories are checked daily for new suitable raw data for reanalysis:
Data made available from specific large projects, such as CPTAC or the Human Proteome Atlas, are also included when they are made available. Every effort is made so that reanalyzed results from all data sources are made available within 48 hours of their being released. In addition, data from lab web sites, ftp sites and direct contributions through the GPM sites made available to researchers are imported into GPMDB as part of a daily incremental update process.
GPMDB has been in operation since Jan. 1, 2004. Several large data source repositories have come into existence and ceased activity in the period since that time. All of the data from those repositories (e.g., TRANCHE, Peptidome) were reanalyzed and stored in GPMDB and they are still available even though the source repository sites are no longer active.
Simply because data is made available does not mean that it will be included in GPMDB. The data must pass our internal automated quality control tests for its initial acceptance and it may be rejected subsequently because of either quality or originality concerns.
The following is a data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list was current, as of February 7, 2016.