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==Data from publications== | ==Data from publications== | ||
- | The following is a data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list was current, as of August | + | The following is a list of data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list (1,238 publications) was current, as of August 28, 2016. |
#Speer CA, Whitmire WM, (1989) "Shedding of the immunodominant P20 surface antigen of Eimeria bovis sporozoites." <i>Infect Immun</i> <b>57</b>(3):999–1001; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/2645217 2645217]; GPMDB: [http://gpmdb.org/data/keyword/2645217 66]. | #Speer CA, Whitmire WM, (1989) "Shedding of the immunodominant P20 surface antigen of Eimeria bovis sporozoites." <i>Infect Immun</i> <b>57</b>(3):999–1001; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/2645217 2645217]; GPMDB: [http://gpmdb.org/data/keyword/2645217 66]. | ||
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#Rinschen MM, Yu MJ, Wang G, Boja ES, Hoffert JD, Pisitkun T, Knepper MA, (2010) "Quantitative phosphoproteomic analysis reveals vasopressin V2-receptor-dependent signaling pathways in renal collecting duct cells." <i>Proc Natl Acad Sci U S A</i> <b>107</b>(8):3882–7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20139300 20139300]; doi: [https://dx.doi.org/10.1073/pnas.0910646107 10.1073/pnas.0910646107]; GPMDB: [http://gpmdb.org/data/keyword/20139300 117]. | #Rinschen MM, Yu MJ, Wang G, Boja ES, Hoffert JD, Pisitkun T, Knepper MA, (2010) "Quantitative phosphoproteomic analysis reveals vasopressin V2-receptor-dependent signaling pathways in renal collecting duct cells." <i>Proc Natl Acad Sci U S A</i> <b>107</b>(8):3882–7; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20139300 20139300]; doi: [https://dx.doi.org/10.1073/pnas.0910646107 10.1073/pnas.0910646107]; GPMDB: [http://gpmdb.org/data/keyword/20139300 117]. | ||
#Looso M, Borchardt T, Krüger M, Braun T, (2010) "Advanced identification of proteins in uncharacterized proteomes by pulsed in vivo stable isotope labeling-based mass spectrometry." <i>Mol Cell Proteomics</i> <b>9</b>(6):1157–66; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20139370 20139370]; doi: [https://dx.doi.org/10.1074/mcp.M900426-MCP200 10.1074/mcp.M900426-MCP200]; GPMDB: [http://gpmdb.org/data/keyword/20139370 23]. | #Looso M, Borchardt T, Krüger M, Braun T, (2010) "Advanced identification of proteins in uncharacterized proteomes by pulsed in vivo stable isotope labeling-based mass spectrometry." <i>Mol Cell Proteomics</i> <b>9</b>(6):1157–66; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20139370 20139370]; doi: [https://dx.doi.org/10.1074/mcp.M900426-MCP200 10.1074/mcp.M900426-MCP200]; GPMDB: [http://gpmdb.org/data/keyword/20139370 23]. | ||
- | # | + | # () "" <i></i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/ ]; GPMDB: [http://gpmdb.org/data/keyword/20158270 2]. |
#Sharma K, Kumar C, Kéri G, Breitkopf SB, Oppermann FS, Daub H, (2010) "Quantitative analysis of kinase-proximal signaling in lipopolysaccharide-induced innate immune response." <i>J Proteome Res</i> <b>9</b>(5):2539–49; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20222745 20222745]; doi: [https://dx.doi.org/10.1021/pr901192p 10.1021/pr901192p]; GPMDB: [http://gpmdb.org/data/keyword/20222745 73]. | #Sharma K, Kumar C, Kéri G, Breitkopf SB, Oppermann FS, Daub H, (2010) "Quantitative analysis of kinase-proximal signaling in lipopolysaccharide-induced innate immune response." <i>J Proteome Res</i> <b>9</b>(5):2539–49; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20222745 20222745]; doi: [https://dx.doi.org/10.1021/pr901192p 10.1021/pr901192p]; GPMDB: [http://gpmdb.org/data/keyword/20222745 73]. | ||
#Baiges I, Palmfeldt J, Bladé C, Gregersen N, Arola L, (2010) "Lipogenesis is decreased by grape seed proanthocyanidins according to liver proteomics of rats fed a high fat diet." <i>Mol Cell Proteomics</i> <b>9</b>(7):1499–513; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20332082 20332082]; doi: [https://dx.doi.org/10.1074/mcp.M000055-MCP201 10.1074/mcp.M000055-MCP201]; GPMDB: [http://gpmdb.org/data/keyword/20332082 2]. | #Baiges I, Palmfeldt J, Bladé C, Gregersen N, Arola L, (2010) "Lipogenesis is decreased by grape seed proanthocyanidins according to liver proteomics of rats fed a high fat diet." <i>Mol Cell Proteomics</i> <b>9</b>(7):1499–513; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/20332082 20332082]; doi: [https://dx.doi.org/10.1074/mcp.M000055-MCP201 10.1074/mcp.M000055-MCP201]; GPMDB: [http://gpmdb.org/data/keyword/20332082 2]. | ||
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#Meding S, Martin K, Gustafsson OJ, Eddes JS, Hack S, Oehler MK, Hoffmann P, (2013) "Tryptic peptide reference data sets for MALDI imaging mass spectrometry on formalin-fixed ovarian cancer tissues." <i>J Proteome Res</i> <b>12</b>(1):308–15; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23214983 23214983]; doi: [https://dx.doi.org/10.1021/pr300996x 10.1021/pr300996x]; GPMDB: [http://gpmdb.org/data/keyword/23214983 31]. | #Meding S, Martin K, Gustafsson OJ, Eddes JS, Hack S, Oehler MK, Hoffmann P, (2013) "Tryptic peptide reference data sets for MALDI imaging mass spectrometry on formalin-fixed ovarian cancer tissues." <i>J Proteome Res</i> <b>12</b>(1):308–15; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23214983 23214983]; doi: [https://dx.doi.org/10.1021/pr300996x 10.1021/pr300996x]; GPMDB: [http://gpmdb.org/data/keyword/23214983 31]. | ||
#Tauro BJ, Greening DW, Mathias RA, Mathivanan S, Ji H, Simpson RJ, (2013) "Two distinct populations of exosomes are released from LIM1863 colon carcinoma cell-derived organoids." <i>Mol Cell Proteomics</i> <b>12</b>(3):587–98; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23230278 23230278]; doi: [https://dx.doi.org/10.1074/mcp.M112.021303 10.1074/mcp.M112.021303]; GPMDB: [http://gpmdb.org/data/keyword/23230278 20]. | #Tauro BJ, Greening DW, Mathias RA, Mathivanan S, Ji H, Simpson RJ, (2013) "Two distinct populations of exosomes are released from LIM1863 colon carcinoma cell-derived organoids." <i>Mol Cell Proteomics</i> <b>12</b>(3):587–98; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23230278 23230278]; doi: [https://dx.doi.org/10.1074/mcp.M112.021303 10.1074/mcp.M112.021303]; GPMDB: [http://gpmdb.org/data/keyword/23230278 20]. | ||
- | # | + | # () "" <i></i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/ ]; GPMDB: [http://gpmdb.org/data/keyword/23234512 43]. |
#Farcas AM, Blackledge NP, Sudbery I, Long HK, McGouran JF, Rose NR, Lee S, Sims D, Cerase A, Sheahan TW, Koseki H, Brockdorff N, Ponting CP, Kessler BM, Klose RJ, (2012) "KDM2B links the Polycomb Repressive Complex 1 (PRC1) to recognition of CpG islands." <i>Elife</i> <b>1</b>:e00205; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23256043 23256043]; doi: [https://dx.doi.org/10.7554/eLife.00205 10.7554/eLife.00205]; GPMDB: [http://gpmdb.org/data/keyword/23256043 5]. | #Farcas AM, Blackledge NP, Sudbery I, Long HK, McGouran JF, Rose NR, Lee S, Sims D, Cerase A, Sheahan TW, Koseki H, Brockdorff N, Ponting CP, Kessler BM, Klose RJ, (2012) "KDM2B links the Polycomb Repressive Complex 1 (PRC1) to recognition of CpG islands." <i>Elife</i> <b>1</b>:e00205; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23256043 23256043]; doi: [https://dx.doi.org/10.7554/eLife.00205 10.7554/eLife.00205]; GPMDB: [http://gpmdb.org/data/keyword/23256043 5]. | ||
#Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA, (2013) "Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments." <i>Mol Cell Proteomics</i> <b>12</b>(3):825–31; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23266961 23266961]; doi: [https://dx.doi.org/10.1074/mcp.O112.027094 10.1074/mcp.O112.027094]; GPMDB: [http://gpmdb.org/data/keyword/23266961 72]. | #Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA, (2013) "Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments." <i>Mol Cell Proteomics</i> <b>12</b>(3):825–31; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23266961 23266961]; doi: [https://dx.doi.org/10.1074/mcp.O112.027094 10.1074/mcp.O112.027094]; GPMDB: [http://gpmdb.org/data/keyword/23266961 72]. | ||
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#Gunaratne J, Schmidt A, Quandt A, Neo SP, Saraç OS, Gracia T, Loguercio S, Ahrné E, Xia RL, Tan KH, Lössner C, Bähler J, Beyer A, Blackstock W, Aebersold R, (2013) "Extensive mass spectrometry-based analysis of the fission yeast proteome: the Schizosaccharomyces pombe PeptideAtlas." <i>Mol Cell Proteomics</i> <b>12</b>(6):1741–51; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23462206 23462206]; doi: [https://dx.doi.org/10.1074/mcp.M112.023754 10.1074/mcp.M112.023754]; GPMDB: [http://gpmdb.org/data/keyword/23462206 384]. | #Gunaratne J, Schmidt A, Quandt A, Neo SP, Saraç OS, Gracia T, Loguercio S, Ahrné E, Xia RL, Tan KH, Lössner C, Bähler J, Beyer A, Blackstock W, Aebersold R, (2013) "Extensive mass spectrometry-based analysis of the fission yeast proteome: the Schizosaccharomyces pombe PeptideAtlas." <i>Mol Cell Proteomics</i> <b>12</b>(6):1741–51; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23462206 23462206]; doi: [https://dx.doi.org/10.1074/mcp.M112.023754 10.1074/mcp.M112.023754]; GPMDB: [http://gpmdb.org/data/keyword/23462206 384]. | ||
#Hassan C, Kester MG, de Ru AH, Hombrink P, Drijfhout JW, Nijveen H, Leunissen JA, Heemskerk MH, Falkenburg JH, van Veelen PA, (2013) "The human leukocyte antigen-presented ligandome of B lymphocytes." <i>Mol Cell Proteomics</i> <b>12</b>(7):1829–43; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23481700 23481700]; doi: [https://dx.doi.org/10.1074/mcp.M112.024810 10.1074/mcp.M112.024810]; GPMDB: [http://gpmdb.org/data/keyword/23481700 191]. | #Hassan C, Kester MG, de Ru AH, Hombrink P, Drijfhout JW, Nijveen H, Leunissen JA, Heemskerk MH, Falkenburg JH, van Veelen PA, (2013) "The human leukocyte antigen-presented ligandome of B lymphocytes." <i>Mol Cell Proteomics</i> <b>12</b>(7):1829–43; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23481700 23481700]; doi: [https://dx.doi.org/10.1074/mcp.M112.024810 10.1074/mcp.M112.024810]; GPMDB: [http://gpmdb.org/data/keyword/23481700 191]. | ||
- | # | + | # () "" <i></i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/ ]; GPMDB: [http://gpmdb.org/data/keyword/23485197 148]. |
#van Nuland R, Smits AH, Pallaki P, Jansen PW, Vermeulen M, Timmers HT, (2013) "Quantitative dissection and stoichiometry determination of the human SET1/MLL histone methyltransferase complexes." <i>Mol Cell Biol</i> <b>33</b>(10):2067–77; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23508102 23508102]; doi: [https://dx.doi.org/10.1128/MCB.01742-12 10.1128/MCB.01742-12]; GPMDB: [http://gpmdb.org/data/keyword/23508102 52]. | #van Nuland R, Smits AH, Pallaki P, Jansen PW, Vermeulen M, Timmers HT, (2013) "Quantitative dissection and stoichiometry determination of the human SET1/MLL histone methyltransferase complexes." <i>Mol Cell Biol</i> <b>33</b>(10):2067–77; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23508102 23508102]; doi: [https://dx.doi.org/10.1128/MCB.01742-12 10.1128/MCB.01742-12]; GPMDB: [http://gpmdb.org/data/keyword/23508102 52]. | ||
#Papachristou EK, Roumeliotis TI, Chrysagi A, Trigoni C, Charvalos E, Townsend PA, Pavlakis K, Garbis SD, (2013) "The shotgun proteomic study of the human ThinPrep cervical smear using iTRAQ mass-tagging and 2D LC-FT-Orbitrap-MS: the detection of the human papillomavirus at the protein level." <i>J Proteome Res</i> <b>12</b>(5):2078–89; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23510160 23510160]; doi: [https://dx.doi.org/10.1021/pr301067r 10.1021/pr301067r]; GPMDB: [http://gpmdb.org/data/keyword/23510160 3]. | #Papachristou EK, Roumeliotis TI, Chrysagi A, Trigoni C, Charvalos E, Townsend PA, Pavlakis K, Garbis SD, (2013) "The shotgun proteomic study of the human ThinPrep cervical smear using iTRAQ mass-tagging and 2D LC-FT-Orbitrap-MS: the detection of the human papillomavirus at the protein level." <i>J Proteome Res</i> <b>12</b>(5):2078–89; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/23510160 23510160]; doi: [https://dx.doi.org/10.1021/pr301067r 10.1021/pr301067r]; GPMDB: [http://gpmdb.org/data/keyword/23510160 3]. | ||
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#Thomae AW, Schade GO, Padeken J, Borath M, Vetter I, Kremmer E, Heun P, Imhof A, (2013) "A pair of centromeric proteins mediates reproductive isolation in Drosophila species." <i>Dev Cell</i> <b>27</b>(4):412–24; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24239514 24239514]; doi: [https://dx.doi.org/10.1016/j.devcel.2013.10.001 10.1016/j.devcel.2013.10.001]; GPMDB: [http://gpmdb.org/data/keyword/24239514 51]. | #Thomae AW, Schade GO, Padeken J, Borath M, Vetter I, Kremmer E, Heun P, Imhof A, (2013) "A pair of centromeric proteins mediates reproductive isolation in Drosophila species." <i>Dev Cell</i> <b>27</b>(4):412–24; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24239514 24239514]; doi: [https://dx.doi.org/10.1016/j.devcel.2013.10.001 10.1016/j.devcel.2013.10.001]; GPMDB: [http://gpmdb.org/data/keyword/24239514 51]. | ||
#Branca RM, Orre LM, Johansson HJ, Granholm V, Huss M, Pérez-Bercoff Å, Forshed J, Käll L, Lehtiö J, (2014) "HiRIEF LC-MS enables deep proteome coverage and unbiased proteogenomics." <i>Nat Methods</i> <b>11</b>(1):59–62; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24240322 24240322]; doi: [https://dx.doi.org/10.1038/nmeth.2732 10.1038/nmeth.2732]; GPMDB: [http://gpmdb.org/data/keyword/24240322 2592]. | #Branca RM, Orre LM, Johansson HJ, Granholm V, Huss M, Pérez-Bercoff Å, Forshed J, Käll L, Lehtiö J, (2014) "HiRIEF LC-MS enables deep proteome coverage and unbiased proteogenomics." <i>Nat Methods</i> <b>11</b>(1):59–62; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24240322 24240322]; doi: [https://dx.doi.org/10.1038/nmeth.2732 10.1038/nmeth.2732]; GPMDB: [http://gpmdb.org/data/keyword/24240322 2592]. | ||
- | # | + | # () "" <i></i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/ ]; GPMDB: [http://gpmdb.org/data/keyword/24248375 87]. |
#Chang C, Li L, Zhang C, Wu S, Guo K, Zi J, Chen Z, Jiang J, Ma J, Yu Q, Fan F, Qin P, Han M, Su N, Chen T, Wang K, Zhai L, Zhang T, Ying W, Xu Z, Zhang Y, Liu Y, Liu X, Zhong F, Shen H, Wang Q, Hou G, Zhao H, Li G, Liu S, Gu W, Wang G, Wang T, Zhang G, Qian X, Li N, He QY, Lin L, Yang P, Zhu Y, He F, Xu P, (2014) "Systematic analyses of the transcriptome, translatome, and proteome provide a global view and potential strategy for the C-HPP." <i>J Proteome Res</i> <b>13</b>(1):38–49; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24256510 24256510]; doi: [https://dx.doi.org/10.1021/pr4009018 10.1021/pr4009018]; GPMDB: [http://gpmdb.org/data/keyword/24256510 216]. | #Chang C, Li L, Zhang C, Wu S, Guo K, Zi J, Chen Z, Jiang J, Ma J, Yu Q, Fan F, Qin P, Han M, Su N, Chen T, Wang K, Zhai L, Zhang T, Ying W, Xu Z, Zhang Y, Liu Y, Liu X, Zhong F, Shen H, Wang Q, Hou G, Zhao H, Li G, Liu S, Gu W, Wang G, Wang T, Zhang G, Qian X, Li N, He QY, Lin L, Yang P, Zhu Y, He F, Xu P, (2014) "Systematic analyses of the transcriptome, translatome, and proteome provide a global view and potential strategy for the C-HPP." <i>J Proteome Res</i> <b>13</b>(1):38–49; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24256510 24256510]; doi: [https://dx.doi.org/10.1021/pr4009018 10.1021/pr4009018]; GPMDB: [http://gpmdb.org/data/keyword/24256510 216]. | ||
#Dagley LF, White CA, Liao Y, Shi W, Smyth GK, Orian JM, Emili A, Purcell AW, (2014) "Quantitative proteomic profiling reveals novel region-specific markers in the adult mouse brain." <i>Proteomics</i> <b>14</b>(2-3):241–61; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24259518 24259518]; doi: [https://dx.doi.org/10.1002/pmic.201300196 10.1002/pmic.201300196]; GPMDB: [http://gpmdb.org/data/keyword/24259518 56]. | #Dagley LF, White CA, Liao Y, Shi W, Smyth GK, Orian JM, Emili A, Purcell AW, (2014) "Quantitative proteomic profiling reveals novel region-specific markers in the adult mouse brain." <i>Proteomics</i> <b>14</b>(2-3):241–61; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24259518 24259518]; doi: [https://dx.doi.org/10.1002/pmic.201300196 10.1002/pmic.201300196]; GPMDB: [http://gpmdb.org/data/keyword/24259518 56]. | ||
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#Zub KA, Sousa MM, Sarno A, Sharma A, Demirovic A, Rao S, Young C, Aas PA, Ericsson I, Sundan A, Jensen ON, Slupphaug G, (2015) "Modulation of cell metabolic pathways and oxidative stress signaling contribute to acquired melphalan resistance in multiple myeloma cells." <i>PLoS One</i> <b>10</b>(3):e0119857; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25769101 25769101]; doi: [https://dx.doi.org/10.1371/journal.pone.0119857 10.1371/journal.pone.0119857]; GPMDB: [http://gpmdb.org/data/keyword/25769101 12]. | #Zub KA, Sousa MM, Sarno A, Sharma A, Demirovic A, Rao S, Young C, Aas PA, Ericsson I, Sundan A, Jensen ON, Slupphaug G, (2015) "Modulation of cell metabolic pathways and oxidative stress signaling contribute to acquired melphalan resistance in multiple myeloma cells." <i>PLoS One</i> <b>10</b>(3):e0119857; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25769101 25769101]; doi: [https://dx.doi.org/10.1371/journal.pone.0119857 10.1371/journal.pone.0119857]; GPMDB: [http://gpmdb.org/data/keyword/25769101 12]. | ||
#Zigdon H, Savidor A, Levin Y, Meshcheriakova A, Schiffmann R, Futerman AH, (2015) "Identification of a biomarker in cerebrospinal fluid for neuronopathic forms of Gaucher disease." <i>PLoS One</i> <b>10</b>(3):e0120194; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25775479 25775479]; doi: [https://dx.doi.org/10.1371/journal.pone.0120194 10.1371/journal.pone.0120194]; GPMDB: [http://gpmdb.org/data/keyword/25775479 27]. | #Zigdon H, Savidor A, Levin Y, Meshcheriakova A, Schiffmann R, Futerman AH, (2015) "Identification of a biomarker in cerebrospinal fluid for neuronopathic forms of Gaucher disease." <i>PLoS One</i> <b>10</b>(3):e0120194; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25775479 25775479]; doi: [https://dx.doi.org/10.1371/journal.pone.0120194 10.1371/journal.pone.0120194]; GPMDB: [http://gpmdb.org/data/keyword/25775479 27]. | ||
- | # | + | # () "" <i></i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/ ]; GPMDB: [http://gpmdb.org/data/keyword/25780947 12]. |
#Markmann S, Thelen M, Cornils K, Schweizer M, Brocke-Ahmadinejad N, Willnow T, Heeren J, Gieselmann V, Braulke T, Kollmann K, (2015) "Lrp1/LDL Receptor Play Critical Roles in Mannose 6-Phosphate-Independent Lysosomal Enzyme Targeting." <i>Traffic</i> <b>16</b>(7):743–59; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25786328 25786328]; doi: [https://dx.doi.org/10.1111/tra.12284 10.1111/tra.12284]; GPMDB: [http://gpmdb.org/data/keyword/25786328 3]. | #Markmann S, Thelen M, Cornils K, Schweizer M, Brocke-Ahmadinejad N, Willnow T, Heeren J, Gieselmann V, Braulke T, Kollmann K, (2015) "Lrp1/LDL Receptor Play Critical Roles in Mannose 6-Phosphate-Independent Lysosomal Enzyme Targeting." <i>Traffic</i> <b>16</b>(7):743–59; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25786328 25786328]; doi: [https://dx.doi.org/10.1111/tra.12284 10.1111/tra.12284]; GPMDB: [http://gpmdb.org/data/keyword/25786328 3]. | ||
#Bracht T, Schweinsberg V, Trippler M, Kohl M, Ahrens M, Padden J, Naboulsi W, Barkovits K, Megger DA, Eisenacher M, Borchers CH, Schlaak JF, Hoffmann AC, Weber F, Baba HA, Meyer HE, Sitek B, (2015) "Analysis of disease-associated protein expression using quantitative proteomics—fibulin-5 is expressed in association with hepatic fibrosis." <i>J Proteome Res</i> <b>14</b>(5):2278–86; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25807371 25807371]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00053 10.1021/acs.jproteome.5b00053]; GPMDB: [http://gpmdb.org/data/keyword/25807371 27]. | #Bracht T, Schweinsberg V, Trippler M, Kohl M, Ahrens M, Padden J, Naboulsi W, Barkovits K, Megger DA, Eisenacher M, Borchers CH, Schlaak JF, Hoffmann AC, Weber F, Baba HA, Meyer HE, Sitek B, (2015) "Analysis of disease-associated protein expression using quantitative proteomics—fibulin-5 is expressed in association with hepatic fibrosis." <i>J Proteome Res</i> <b>14</b>(5):2278–86; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25807371 25807371]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00053 10.1021/acs.jproteome.5b00053]; GPMDB: [http://gpmdb.org/data/keyword/25807371 27]. | ||
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#Wang J, Zhang Y, Yu Y, (2015) "Crescendo: A Protein Sequence Database Search Engine for Tandem Mass Spectra." <i>J Am Soc Mass Spectrom</i> <b>26</b>(7):1077–84; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25895889 25895889]; doi: [https://dx.doi.org/10.1007/s13361-015-1120-3 10.1007/s13361-015-1120-3]; GPMDB: [http://gpmdb.org/data/keyword/25895889 20]. | #Wang J, Zhang Y, Yu Y, (2015) "Crescendo: A Protein Sequence Database Search Engine for Tandem Mass Spectra." <i>J Am Soc Mass Spectrom</i> <b>26</b>(7):1077–84; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25895889 25895889]; doi: [https://dx.doi.org/10.1007/s13361-015-1120-3 10.1007/s13361-015-1120-3]; GPMDB: [http://gpmdb.org/data/keyword/25895889 20]. | ||
#Wendler S, Otto A, Ortseifen V, Bonn F, Neshat A, Schneiker-Bekel S, Walter F, Wolf T, Zemke T, Wehmeier UF, Hecker M, Kalinowski J, Becher D, Pühler A, (2015) "Comprehensive proteome analysis of Actinoplanes sp. SE50/110 highlighting the location of proteins encoded by the acarbose and the pyochelin biosynthesis gene cluster." <i>J Proteomics</i> <b>125</b>:1–16; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25896738 25896738]; doi: [https://dx.doi.org/10.1016/j.jprot.2015.04.013 10.1016/j.jprot.2015.04.013]; GPMDB: [http://gpmdb.org/data/keyword/25896738 198]. | #Wendler S, Otto A, Ortseifen V, Bonn F, Neshat A, Schneiker-Bekel S, Walter F, Wolf T, Zemke T, Wehmeier UF, Hecker M, Kalinowski J, Becher D, Pühler A, (2015) "Comprehensive proteome analysis of Actinoplanes sp. SE50/110 highlighting the location of proteins encoded by the acarbose and the pyochelin biosynthesis gene cluster." <i>J Proteomics</i> <b>125</b>:1–16; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25896738 25896738]; doi: [https://dx.doi.org/10.1016/j.jprot.2015.04.013 10.1016/j.jprot.2015.04.013]; GPMDB: [http://gpmdb.org/data/keyword/25896738 198]. | ||
+ | #Oettinghaus B, Schulz JM, Restelli LM, Licci M, Savoia C, Schmidt A, Schmitt K, Grimm A, Morè L, Hench J, Tolnay M, Eckert A, D'Adamo P, Franken P, Ishihara N, Mihara K, Bischofberger J, Scorrano L, Frank S, (2016) "Synaptic dysfunction, memory deficits and hippocampal atrophy due to ablation of mitochondrial fission in adult forebrain neurons." <i>Cell Death Differ</i> <b>23</b>(1):18–28; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25909888 25909888]; doi: [https://dx.doi.org/10.1038/cdd.2015.39 10.1038/cdd.2015.39]; GPMDB: [http://gpmdb.org/data/keyword/25909888 12]. | ||
#Tan HT, Lim TK, Richards AM, Kofidis T, Teoh KL, Ling LH, Chung MC, (2015) "Unravelling the proteome of degenerative human mitral valves." <i>Proteomics</i> <b>15</b>(17):2934–44; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25914152 25914152]; doi: [https://dx.doi.org/10.1002/pmic.201500040 10.1002/pmic.201500040]; GPMDB: [http://gpmdb.org/data/keyword/25914152 12]. | #Tan HT, Lim TK, Richards AM, Kofidis T, Teoh KL, Ling LH, Chung MC, (2015) "Unravelling the proteome of degenerative human mitral valves." <i>Proteomics</i> <b>15</b>(17):2934–44; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25914152 25914152]; doi: [https://dx.doi.org/10.1002/pmic.201500040 10.1002/pmic.201500040]; GPMDB: [http://gpmdb.org/data/keyword/25914152 12]. | ||
#Arntzen MØ, Karlskås IL, Skaugen M, Eijsink VG, Mathiesen G, (2015) "Proteomic Investigation of the Response of Enterococcus faecalis V583 when Cultivated in Urine." <i>PLoS One</i> <b>10</b>(4):e0126694; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25915650 25915650]; doi: [https://dx.doi.org/10.1371/journal.pone.0126694 10.1371/journal.pone.0126694]; GPMDB: [http://gpmdb.org/data/keyword/25915650 24]. | #Arntzen MØ, Karlskås IL, Skaugen M, Eijsink VG, Mathiesen G, (2015) "Proteomic Investigation of the Response of Enterococcus faecalis V583 when Cultivated in Urine." <i>PLoS One</i> <b>10</b>(4):e0126694; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25915650 25915650]; doi: [https://dx.doi.org/10.1371/journal.pone.0126694 10.1371/journal.pone.0126694]; GPMDB: [http://gpmdb.org/data/keyword/25915650 24]. | ||
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#Berger ST, Ahmed S, Muntel J, Cuevas Polo N, Bachur R, Kentsis A, Steen J, Steen H, (2015) "MStern Blotting-High Throughput Polyvinylidene Fluoride (PVDF) Membrane-Based Proteomic Sample Preparation for 96-Well Plates." <i>Mol Cell Proteomics</i> <b>14</b>(10):2814–23; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26223766 26223766]; doi: [https://dx.doi.org/10.1074/mcp.O115.049650 10.1074/mcp.O115.049650]; GPMDB: [http://gpmdb.org/data/keyword/26223766 113]. | #Berger ST, Ahmed S, Muntel J, Cuevas Polo N, Bachur R, Kentsis A, Steen J, Steen H, (2015) "MStern Blotting-High Throughput Polyvinylidene Fluoride (PVDF) Membrane-Based Proteomic Sample Preparation for 96-Well Plates." <i>Mol Cell Proteomics</i> <b>14</b>(10):2814–23; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26223766 26223766]; doi: [https://dx.doi.org/10.1074/mcp.O115.049650 10.1074/mcp.O115.049650]; GPMDB: [http://gpmdb.org/data/keyword/26223766 113]. | ||
#Woo J, Han D, Park J, Kim SJ, Kim Y, (2015) "In-depth characterization of the secretome of mouse CNS cell lines by LC-MS/MS without prefractionation." <i>Proteomics</i> <b>15</b>(21):3617–22; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26227174 26227174]; doi: [https://dx.doi.org/10.1002/pmic.201400623 10.1002/pmic.201400623]; GPMDB: [http://gpmdb.org/data/keyword/26227174 27]. | #Woo J, Han D, Park J, Kim SJ, Kim Y, (2015) "In-depth characterization of the secretome of mouse CNS cell lines by LC-MS/MS without prefractionation." <i>Proteomics</i> <b>15</b>(21):3617–22; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26227174 26227174]; doi: [https://dx.doi.org/10.1002/pmic.201400623 10.1002/pmic.201400623]; GPMDB: [http://gpmdb.org/data/keyword/26227174 27]. | ||
- | # | + | # () "" <i></i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/ ]; GPMDB: [http://gpmdb.org/data/keyword/26227301 182]. |
#Na YR, Hong JH, Lee MY, Jung JH, Jung D, Kim YW, Son D, Choi M, Kim KP, Seok SH 2nd, (2015) "Proteomic Analysis Reveals Distinct Metabolic Differences Between Granulocyte-Macrophage Colony Stimulating Factor (GM-CSF) and Macrophage Colony Stimulating Factor (M-CSF) Grown Macrophages Derived from Murine Bone Marrow Cells." <i>Mol Cell Proteomics</i> <b>14</b>(10):2722–32; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26229149 26229149]; doi: [https://dx.doi.org/10.1074/mcp.M115.048744 10.1074/mcp.M115.048744]; GPMDB: [http://gpmdb.org/data/keyword/26229149 16]. | #Na YR, Hong JH, Lee MY, Jung JH, Jung D, Kim YW, Son D, Choi M, Kim KP, Seok SH 2nd, (2015) "Proteomic Analysis Reveals Distinct Metabolic Differences Between Granulocyte-Macrophage Colony Stimulating Factor (GM-CSF) and Macrophage Colony Stimulating Factor (M-CSF) Grown Macrophages Derived from Murine Bone Marrow Cells." <i>Mol Cell Proteomics</i> <b>14</b>(10):2722–32; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26229149 26229149]; doi: [https://dx.doi.org/10.1074/mcp.M115.048744 10.1074/mcp.M115.048744]; GPMDB: [http://gpmdb.org/data/keyword/26229149 16]. | ||
#Haurogné K, Pavlovic M, Rogniaux H, Bach JM, Lieubeau B, (2015) "Type 1 Diabetes Prone NOD Mice Have Diminished Cxcr1 mRNA Expression in Polymorphonuclear Neutrophils and CD4+ T Lymphocytes." <i>PLoS One</i> <b>10</b>(7):e0134365; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26230114 26230114]; doi: [https://dx.doi.org/10.1371/journal.pone.0134365 10.1371/journal.pone.0134365]; GPMDB: [http://gpmdb.org/data/keyword/26230114 12]. | #Haurogné K, Pavlovic M, Rogniaux H, Bach JM, Lieubeau B, (2015) "Type 1 Diabetes Prone NOD Mice Have Diminished Cxcr1 mRNA Expression in Polymorphonuclear Neutrophils and CD4+ T Lymphocytes." <i>PLoS One</i> <b>10</b>(7):e0134365; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26230114 26230114]; doi: [https://dx.doi.org/10.1371/journal.pone.0134365 10.1371/journal.pone.0134365]; GPMDB: [http://gpmdb.org/data/keyword/26230114 12]. | ||
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#Kieselbach T, Zijnge V, Granström E, Oscarsson J, (2015) "Proteomics of Aggregatibacter actinomycetemcomitans Outer Membrane Vesicles." <i>PLoS One</i> <b>10</b>(9):e0138591; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26381655 26381655]; doi: [https://dx.doi.org/10.1371/journal.pone.0138591 10.1371/journal.pone.0138591]; GPMDB: [http://gpmdb.org/data/keyword/26381655 5]. | #Kieselbach T, Zijnge V, Granström E, Oscarsson J, (2015) "Proteomics of Aggregatibacter actinomycetemcomitans Outer Membrane Vesicles." <i>PLoS One</i> <b>10</b>(9):e0138591; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26381655 26381655]; doi: [https://dx.doi.org/10.1371/journal.pone.0138591 10.1371/journal.pone.0138591]; GPMDB: [http://gpmdb.org/data/keyword/26381655 5]. | ||
#Goris T, Schiffmann CL, Gadkari J, Schubert T, Seifert J, Jehmlich N, von Bergen M, Diekert G, (2015) "Proteomics of the organohalide-respiring Epsilonproteobacterium Sulfurospirillum multivorans adapted to tetrachloroethene and other energy substrates." <i>Sci Rep</i> <b>5</b>:13794; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26387727 26387727]; doi: [https://dx.doi.org/10.1038/srep13794 10.1038/srep13794]; GPMDB: [http://gpmdb.org/data/keyword/26387727 36]. | #Goris T, Schiffmann CL, Gadkari J, Schubert T, Seifert J, Jehmlich N, von Bergen M, Diekert G, (2015) "Proteomics of the organohalide-respiring Epsilonproteobacterium Sulfurospirillum multivorans adapted to tetrachloroethene and other energy substrates." <i>Sci Rep</i> <b>5</b>:13794; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26387727 26387727]; doi: [https://dx.doi.org/10.1038/srep13794 10.1038/srep13794]; GPMDB: [http://gpmdb.org/data/keyword/26387727 36]. | ||
- | #Creixell P, Schoof EM, Simpson CD, Longden J, Miller CJ, Lou HJ, Perryman L, Cox TR, Zivanovic N, Palmeri A, Wesolowska-Andersen A, Helmer-Citterich M, Ferkinghoff-Borg J, Itamochi H, Bodenmiller B, Erler JT, Turk BE, Linding R, (2015) "Kinome-wide decoding of network-attacking mutations rewiring cancer signaling." <i>Cell</i> <b>163</b>(1):202–17; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26388441 26388441]; doi: [https://dx.doi.org/10.1016/j.cell.2015.08.056 10.1016/j.cell.2015.08.056]; GPMDB: [http://gpmdb.org/data/keyword/26388441 | + | #Creixell P, Schoof EM, Simpson CD, Longden J, Miller CJ, Lou HJ, Perryman L, Cox TR, Zivanovic N, Palmeri A, Wesolowska-Andersen A, Helmer-Citterich M, Ferkinghoff-Borg J, Itamochi H, Bodenmiller B, Erler JT, Turk BE, Linding R, (2015) "Kinome-wide decoding of network-attacking mutations rewiring cancer signaling." <i>Cell</i> <b>163</b>(1):202–17; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26388441 26388441]; doi: [https://dx.doi.org/10.1016/j.cell.2015.08.056 10.1016/j.cell.2015.08.056]; GPMDB: [http://gpmdb.org/data/keyword/26388441 127]. |
#Paulo JA, O'Connell JD, Gaun A, Gygi SP, (2015) "Proteome-wide quantitative multiplexed profiling of protein expression: carbon-source dependency in Saccharomyces cerevisiae." <i>Mol Biol Cell</i> <b>26</b>(22):4063–74; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26399295 26399295]; doi: [https://dx.doi.org/10.1091/mbc.E15-07-0499 10.1091/mbc.E15-07-0499]; GPMDB: [http://gpmdb.org/data/keyword/26399295 1]. | #Paulo JA, O'Connell JD, Gaun A, Gygi SP, (2015) "Proteome-wide quantitative multiplexed profiling of protein expression: carbon-source dependency in Saccharomyces cerevisiae." <i>Mol Biol Cell</i> <b>26</b>(22):4063–74; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26399295 26399295]; doi: [https://dx.doi.org/10.1091/mbc.E15-07-0499 10.1091/mbc.E15-07-0499]; GPMDB: [http://gpmdb.org/data/keyword/26399295 1]. | ||
#Liu T, Tian CF, Chen WX, (2015) "Site-Specific Ser/Thr/Tyr Phosphoproteome of Sinorhizobium meliloti at Stationary Phase." <i>PLoS One</i> <b>10</b>(9):e0139143; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26401955 26401955]; doi: [https://dx.doi.org/10.1371/journal.pone.0139143 10.1371/journal.pone.0139143]; GPMDB: [http://gpmdb.org/data/keyword/26401955 2]. | #Liu T, Tian CF, Chen WX, (2015) "Site-Specific Ser/Thr/Tyr Phosphoproteome of Sinorhizobium meliloti at Stationary Phase." <i>PLoS One</i> <b>10</b>(9):e0139143; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26401955 26401955]; doi: [https://dx.doi.org/10.1371/journal.pone.0139143 10.1371/journal.pone.0139143]; GPMDB: [http://gpmdb.org/data/keyword/26401955 2]. | ||
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#Sahebekhtiari N, Thomsen MM, Sloth JJ, Stenbroen V, Zeviani M, Gregersen N, Viscomi C, Palmfeldt J, (2016) "Quantitative proteomics suggests metabolic reprogramming during ETHE1 deficiency." <i>Proteomics</i> <b>16</b>(7):1166–76; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26867521 26867521]; doi: [https://dx.doi.org/10.1002/pmic.201500336 10.1002/pmic.201500336]; GPMDB: [http://gpmdb.org/data/keyword/26867521 50]. | #Sahebekhtiari N, Thomsen MM, Sloth JJ, Stenbroen V, Zeviani M, Gregersen N, Viscomi C, Palmfeldt J, (2016) "Quantitative proteomics suggests metabolic reprogramming during ETHE1 deficiency." <i>Proteomics</i> <b>16</b>(7):1166–76; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26867521 26867521]; doi: [https://dx.doi.org/10.1002/pmic.201500336 10.1002/pmic.201500336]; GPMDB: [http://gpmdb.org/data/keyword/26867521 50]. | ||
#Lamberti Y, Cafiero JH, Surmann K, Valdez H, Holubova J, Večerek B, Sebo P, Schmidt F, Völker U, Rodriguez ME, (2016) "Proteome analysis of Bordetella pertussis isolated from human macrophages." <i>J Proteomics</i> <b>136</b>:55–67; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26873878 26873878]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.02.002 10.1016/j.jprot.2016.02.002]; GPMDB: [http://gpmdb.org/data/keyword/26873878 9]. | #Lamberti Y, Cafiero JH, Surmann K, Valdez H, Holubova J, Večerek B, Sebo P, Schmidt F, Völker U, Rodriguez ME, (2016) "Proteome analysis of Bordetella pertussis isolated from human macrophages." <i>J Proteomics</i> <b>136</b>:55–67; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26873878 26873878]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.02.002 10.1016/j.jprot.2016.02.002]; GPMDB: [http://gpmdb.org/data/keyword/26873878 9]. | ||
+ | # () "" <i></i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/ ]; GPMDB: [http://gpmdb.org/data/keyword/26878232 1]. | ||
#Knöppel A, Näsvall J, Andersson DI, (2016) "Compensating the Fitness Costs of Synonymous Mutations." <i>Mol Biol Evol</i> <b>33</b>(6):1461–77; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26882986 26882986]; doi: [https://dx.doi.org/10.1093/molbev/msw028 10.1093/molbev/msw028]; GPMDB: [http://gpmdb.org/data/keyword/26882986 72]. | #Knöppel A, Näsvall J, Andersson DI, (2016) "Compensating the Fitness Costs of Synonymous Mutations." <i>Mol Biol Evol</i> <b>33</b>(6):1461–77; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26882986 26882986]; doi: [https://dx.doi.org/10.1093/molbev/msw028 10.1093/molbev/msw028]; GPMDB: [http://gpmdb.org/data/keyword/26882986 72]. | ||
#Creedon H, Gómez-Cuadrado L, Tarnauskaitė Ž, Balla J, Canel M, MacLeod KG, Serrels B, Fraser C, Unciti-Broceta A, Tracey N, Le Bihan T, Klinowska T, Sims AH, Byron A, Brunton VG, (2016) "Identification of novel pathways linking epithelial-to-mesenchymal transition with resistance to HER2-targeted therapy." <i>Oncotarget</i> <b>7</b>(10):11539–52; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26883193 26883193]; doi: [https://dx.doi.org/10.18632/oncotarget.7317 10.18632/oncotarget.7317]; GPMDB: [http://gpmdb.org/data/keyword/26883193 6]. | #Creedon H, Gómez-Cuadrado L, Tarnauskaitė Ž, Balla J, Canel M, MacLeod KG, Serrels B, Fraser C, Unciti-Broceta A, Tracey N, Le Bihan T, Klinowska T, Sims AH, Byron A, Brunton VG, (2016) "Identification of novel pathways linking epithelial-to-mesenchymal transition with resistance to HER2-targeted therapy." <i>Oncotarget</i> <b>7</b>(10):11539–52; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26883193 26883193]; doi: [https://dx.doi.org/10.18632/oncotarget.7317 10.18632/oncotarget.7317]; GPMDB: [http://gpmdb.org/data/keyword/26883193 6]. | ||
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#Yu J, Storer BE, Kushekhar K, Abu Zaid M, Zhang Q, Gafken PR, Ogata Y, Martin PJ, Flowers ME, Hansen JA, Arora M, Cutler C, Jagasia M, Pidala J, Hamilton BK, Chen GL, Pusic I, Lee SJ, Paczesny S, (2016) "Biomarker Panel for Chronic Graft-Versus-Host Disease." <i>J Clin Oncol</i> <b>34</b>(22):2583–90; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27217465 27217465]; doi: [https://dx.doi.org/10.1200/JCO.2015.65.9615 10.1200/JCO.2015.65.9615]; GPMDB: [http://gpmdb.org/data/keyword/27217465 3]. | #Yu J, Storer BE, Kushekhar K, Abu Zaid M, Zhang Q, Gafken PR, Ogata Y, Martin PJ, Flowers ME, Hansen JA, Arora M, Cutler C, Jagasia M, Pidala J, Hamilton BK, Chen GL, Pusic I, Lee SJ, Paczesny S, (2016) "Biomarker Panel for Chronic Graft-Versus-Host Disease." <i>J Clin Oncol</i> <b>34</b>(22):2583–90; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27217465 27217465]; doi: [https://dx.doi.org/10.1200/JCO.2015.65.9615 10.1200/JCO.2015.65.9615]; GPMDB: [http://gpmdb.org/data/keyword/27217465 3]. | ||
#Wang B, Pfeiffer MJ, Drexler HC, Fuellen G, Boiani M, (2016) "Proteomic Analysis of Mouse Oocytes Identifies PRMT7 as a Reprogramming Factor that Replaces SOX2 in the Induction of Pluripotent Stem Cells." <i>J Proteome Res</i> <b>15</b>(8):2407–21; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27225728 27225728]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b01083 10.1021/acs.jproteome.5b01083]; GPMDB: [http://gpmdb.org/data/keyword/27225728 14]. | #Wang B, Pfeiffer MJ, Drexler HC, Fuellen G, Boiani M, (2016) "Proteomic Analysis of Mouse Oocytes Identifies PRMT7 as a Reprogramming Factor that Replaces SOX2 in the Induction of Pluripotent Stem Cells." <i>J Proteome Res</i> <b>15</b>(8):2407–21; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27225728 27225728]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b01083 10.1021/acs.jproteome.5b01083]; GPMDB: [http://gpmdb.org/data/keyword/27225728 14]. | ||
+ | #Lidbury ID, Murphy AR, Scanlan DJ, Bending GD, Jones AM, Moore JD, Goodall A, Hammond JP, Wellington EM, (2016) "Comparative genomic, proteomic and exoproteomic analyses of three Pseudomonas strains reveals novel insights into the phosphorus scavenging capabilities of soil bacteria." <i>Environ Microbiol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27233093 27233093]; doi: [https://dx.doi.org/10.1111/1462-2920.13390 10.1111/1462-2920.13390]; GPMDB: [http://gpmdb.org/data/keyword/27233093 162]. | ||
#Lobas AA, Karpov DS, Kopylov AT, Solovyeva EM, Ivanov MV, Ilina IY, Lazarev VN, Kuznetsova KG, Ilgisonis EV, Zgoda VG, Gorshkov MV, Moshkovskii SA, (2016) "Exome-based proteogenomics of HEK-293 human cell line: Coding genomic variants identified at the level of shotgun proteome." <i>Proteomics</i> <b>16</b>(14):1980–91; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27233776 27233776]; doi: [https://dx.doi.org/10.1002/pmic.201500349 10.1002/pmic.201500349]; GPMDB: [http://gpmdb.org/data/keyword/27233776 7]. | #Lobas AA, Karpov DS, Kopylov AT, Solovyeva EM, Ivanov MV, Ilina IY, Lazarev VN, Kuznetsova KG, Ilgisonis EV, Zgoda VG, Gorshkov MV, Moshkovskii SA, (2016) "Exome-based proteogenomics of HEK-293 human cell line: Coding genomic variants identified at the level of shotgun proteome." <i>Proteomics</i> <b>16</b>(14):1980–91; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27233776 27233776]; doi: [https://dx.doi.org/10.1002/pmic.201500349 10.1002/pmic.201500349]; GPMDB: [http://gpmdb.org/data/keyword/27233776 7]. | ||
#Lodrini M, Poschmann G, Schmidt V, Wünschel J, Dreidax D, Witt O, Höfer T, Meyer HE, Stühler K, Eggert A, Deubzer HE, (2016) "Minichromosome Maintenance Complex Is a Critical Node in the miR-183 Signaling Network of MYCN-Amplified Neuroblastoma Cells." <i>J Proteome Res</i> <b>15</b>(7):2178–86; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27239679 27239679]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00134 10.1021/acs.jproteome.6b00134]; GPMDB: [http://gpmdb.org/data/keyword/27239679 12]. | #Lodrini M, Poschmann G, Schmidt V, Wünschel J, Dreidax D, Witt O, Höfer T, Meyer HE, Stühler K, Eggert A, Deubzer HE, (2016) "Minichromosome Maintenance Complex Is a Critical Node in the miR-183 Signaling Network of MYCN-Amplified Neuroblastoma Cells." <i>J Proteome Res</i> <b>15</b>(7):2178–86; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27239679 27239679]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00134 10.1021/acs.jproteome.6b00134]; GPMDB: [http://gpmdb.org/data/keyword/27239679 12]. | ||
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#Prendergast L, Müller S, Liu Y, Huang H, Dingli F, Loew D, Vassias I, Patel DJ, Sullivan KF, Almouzni G, (2016) "The CENP-T/-W complex is a binding partner of the histone chaperone FACT." <i>Genes Dev</i> <b>30</b>(11):1313–26; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27284163 27284163]; doi: [https://dx.doi.org/10.1101/gad.275073.115 10.1101/gad.275073.115]; GPMDB: [http://gpmdb.org/data/keyword/27284163 47]. | #Prendergast L, Müller S, Liu Y, Huang H, Dingli F, Loew D, Vassias I, Patel DJ, Sullivan KF, Almouzni G, (2016) "The CENP-T/-W complex is a binding partner of the histone chaperone FACT." <i>Genes Dev</i> <b>30</b>(11):1313–26; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27284163 27284163]; doi: [https://dx.doi.org/10.1101/gad.275073.115 10.1101/gad.275073.115]; GPMDB: [http://gpmdb.org/data/keyword/27284163 47]. | ||
#Wiśniewski JR, Mann M, (2016) "A Proteomics Approach to the Protein Normalization Problem: Selection of Unvarying Proteins for MS-Based Proteomics and Western Blotting." <i>J Proteome Res</i> <b>15</b>(7):2321–6; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27297043 27297043]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00403 10.1021/acs.jproteome.6b00403]; GPMDB: [http://gpmdb.org/data/keyword/27297043 64]. | #Wiśniewski JR, Mann M, (2016) "A Proteomics Approach to the Protein Normalization Problem: Selection of Unvarying Proteins for MS-Based Proteomics and Western Blotting." <i>J Proteome Res</i> <b>15</b>(7):2321–6; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27297043 27297043]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00403 10.1021/acs.jproteome.6b00403]; GPMDB: [http://gpmdb.org/data/keyword/27297043 64]. | ||
- | #Narasimhan PB, Bennuru S, Meng Z, Cotton RN, Elliott KR, Ganesan S, McDonald-Fleming R, Veenstra TD, Nutman TB, Semnani | + | #Narasimhan PB, Bennuru S, Meng Z, Cotton RN, Elliott KR, Ganesan S, McDonald-Fleming R, Veenstra TD, Nutman TB, Tolouei Semnani R, (2016) "Microfilariae of Brugia malayi Inhibit the mTOR Pathway and Induce Autophagy in Human Dendritic Cells." <i>Infect Immun</i> <b>84</b>(9):2463–72; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27297394 27297394]; doi: [https://dx.doi.org/10.1128/IAI.00174-16 10.1128/IAI.00174-16]; GPMDB: [http://gpmdb.org/data/keyword/27297394 233]. |
#Rakus D, Gizak A, Wiśniewski JR, (2016) "Proteomics Unveils Fibroblast-Cardiomyocyte Lactate Shuttle and Hexokinase Paradox in Mouse Muscles." <i>J Proteome Res</i> <b>15</b>(8):2479–90; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27302655 27302655]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b01149 10.1021/acs.jproteome.5b01149]; GPMDB: [http://gpmdb.org/data/keyword/27302655 60]. | #Rakus D, Gizak A, Wiśniewski JR, (2016) "Proteomics Unveils Fibroblast-Cardiomyocyte Lactate Shuttle and Hexokinase Paradox in Mouse Muscles." <i>J Proteome Res</i> <b>15</b>(8):2479–90; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27302655 27302655]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b01149 10.1021/acs.jproteome.5b01149]; GPMDB: [http://gpmdb.org/data/keyword/27302655 60]. | ||
#Chick JM, Munger SC, Simecek P, Huttlin EL, Choi K, Gatti DM, Raghupathy N, Svenson KL, Churchill GA, Gygi SP, (2016) "Defining the consequences of genetic variation on a proteome-wide scale." <i>Nature</i> <b>534</b>(7608):500–5; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27309819 27309819]; doi: [https://dx.doi.org/10.1038/nature18270 10.1038/nature18270]; GPMDB: [http://gpmdb.org/data/keyword/27309819 27]. | #Chick JM, Munger SC, Simecek P, Huttlin EL, Choi K, Gatti DM, Raghupathy N, Svenson KL, Churchill GA, Gygi SP, (2016) "Defining the consequences of genetic variation on a proteome-wide scale." <i>Nature</i> <b>534</b>(7608):500–5; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27309819 27309819]; doi: [https://dx.doi.org/10.1038/nature18270 10.1038/nature18270]; GPMDB: [http://gpmdb.org/data/keyword/27309819 27]. | ||
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#Petrera A, Kern U, Linz D, Gomez-Auli A, Hohl M, Gassenhuber J, Sadowski T, Schilling O, (2016) "Proteomic Profiling of Cardiomyocyte-Specific Cathepsin A Overexpression Links Cathepsin A to the Oxidative Stress Response." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27432266 27432266]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00413 10.1021/acs.jproteome.6b00413]; GPMDB: [http://gpmdb.org/data/keyword/27432266 3]. | #Petrera A, Kern U, Linz D, Gomez-Auli A, Hohl M, Gassenhuber J, Sadowski T, Schilling O, (2016) "Proteomic Profiling of Cardiomyocyte-Specific Cathepsin A Overexpression Links Cathepsin A to the Oxidative Stress Response." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27432266 27432266]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00413 10.1021/acs.jproteome.6b00413]; GPMDB: [http://gpmdb.org/data/keyword/27432266 3]. | ||
#Zhou Y, Xiong L, Zhang Y, Yu R, Jiang X, Xu G, (2016) "Quantitative proteomics identifies myoferlin as a novel regulator of A Disintegrin and Metalloproteinase 12 in HeLa cells." <i>J Proteomics</i> <b>148</b>:94–104; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27432471 27432471]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.07.015 10.1016/j.jprot.2016.07.015]; GPMDB: [http://gpmdb.org/data/keyword/27432471 14]. | #Zhou Y, Xiong L, Zhang Y, Yu R, Jiang X, Xu G, (2016) "Quantitative proteomics identifies myoferlin as a novel regulator of A Disintegrin and Metalloproteinase 12 in HeLa cells." <i>J Proteomics</i> <b>148</b>:94–104; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27432471 27432471]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.07.015 10.1016/j.jprot.2016.07.015]; GPMDB: [http://gpmdb.org/data/keyword/27432471 14]. | ||
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#Suárez-Cortes P, Sharma V, Bertuccini L, Costa G, Bannerman NL, Sannella AR, Williamson K, Klemba M, Levashina EA, Lasonder E, Alano P, (2016) "Comparative proteomics and functional analysis reveal a role of P. falciparum osmiophilic bodies in malaria parasite transmission." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27432909 27432909]; doi: [https://dx.doi.org/10.1074/mcp.M116.060681 10.1074/mcp.M116.060681]; GPMDB: [http://gpmdb.org/data/keyword/27432909 162]. | #Suárez-Cortes P, Sharma V, Bertuccini L, Costa G, Bannerman NL, Sannella AR, Williamson K, Klemba M, Levashina EA, Lasonder E, Alano P, (2016) "Comparative proteomics and functional analysis reveal a role of P. falciparum osmiophilic bodies in malaria parasite transmission." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27432909 27432909]; doi: [https://dx.doi.org/10.1074/mcp.M116.060681 10.1074/mcp.M116.060681]; GPMDB: [http://gpmdb.org/data/keyword/27432909 162]. | ||
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#Martinez-Val A, Garcia F, Ximénez-Embún P, Ibarz N, Zarzuela E, Ruppen I, Mohammed S, Munoz J, (2016) "On the Statistical Significance of Compressed Ratios in Isobaric Labeling: A Cross-Platform Comparison." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27452035 27452035]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00151 10.1021/acs.jproteome.6b00151]; GPMDB: [http://gpmdb.org/data/keyword/27452035 18]. | #Martinez-Val A, Garcia F, Ximénez-Embún P, Ibarz N, Zarzuela E, Ruppen I, Mohammed S, Munoz J, (2016) "On the Statistical Significance of Compressed Ratios in Isobaric Labeling: A Cross-Platform Comparison." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27452035 27452035]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00151 10.1021/acs.jproteome.6b00151]; GPMDB: [http://gpmdb.org/data/keyword/27452035 18]. | ||
#Gautier EF, Ducamp S, Leduc M, Salnot V, Guillonneau F, Dussiot M, Hale J, Giarratana MC, Raimbault A, Douay L, Lacombe C, Mohandas N, Verdier F, Zermati Y, Mayeux P, (2016) "Comprehensive Proteomic Analysis of Human Erythropoiesis." <i>Cell Rep</i> <b>16</b>(5):1470–84; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27452463 27452463]; doi: [https://dx.doi.org/10.1016/j.celrep.2016.06.085 10.1016/j.celrep.2016.06.085]; GPMDB: [http://gpmdb.org/data/keyword/27452463 235]. | #Gautier EF, Ducamp S, Leduc M, Salnot V, Guillonneau F, Dussiot M, Hale J, Giarratana MC, Raimbault A, Douay L, Lacombe C, Mohandas N, Verdier F, Zermati Y, Mayeux P, (2016) "Comprehensive Proteomic Analysis of Human Erythropoiesis." <i>Cell Rep</i> <b>16</b>(5):1470–84; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27452463 27452463]; doi: [https://dx.doi.org/10.1016/j.celrep.2016.06.085 10.1016/j.celrep.2016.06.085]; GPMDB: [http://gpmdb.org/data/keyword/27452463 235]. | ||
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#Castello A, Fischer B, Frese CK, Horos R, Alleaume AM, Foehr S, Curk T, Krijgsveld J, Hentze MW, (2016) "Comprehensive Identification of RNA-Binding Domains in Human Cells." <i>Mol Cell</i> <b>63</b>(4):696–710; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27453046 27453046]; doi: [https://dx.doi.org/10.1016/j.molcel.2016.06.029 10.1016/j.molcel.2016.06.029]; GPMDB: [http://gpmdb.org/data/keyword/27453046 12]. | #Castello A, Fischer B, Frese CK, Horos R, Alleaume AM, Foehr S, Curk T, Krijgsveld J, Hentze MW, (2016) "Comprehensive Identification of RNA-Binding Domains in Human Cells." <i>Mol Cell</i> <b>63</b>(4):696–710; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27453046 27453046]; doi: [https://dx.doi.org/10.1016/j.molcel.2016.06.029 10.1016/j.molcel.2016.06.029]; GPMDB: [http://gpmdb.org/data/keyword/27453046 12]. | ||
#Thomsen MS, Birkelund S, Burkhart A, Stensballe A, Moos T, (2016) "Synthesis and deposition of basement membrane proteins by primary brain capillary endothelial cells in a murine model of the blood-brain barrier." <i>J Neurochem</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27456748 27456748]; doi: [https://dx.doi.org/10.1111/jnc.13747 10.1111/jnc.13747]; GPMDB: [http://gpmdb.org/data/keyword/27456748 12]. | #Thomsen MS, Birkelund S, Burkhart A, Stensballe A, Moos T, (2016) "Synthesis and deposition of basement membrane proteins by primary brain capillary endothelial cells in a murine model of the blood-brain barrier." <i>J Neurochem</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27456748 27456748]; doi: [https://dx.doi.org/10.1111/jnc.13747 10.1111/jnc.13747]; GPMDB: [http://gpmdb.org/data/keyword/27456748 12]. | ||
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#Roberts AJ, Fairlamb AH, (2016) "The N-myristoylome of Trypanosoma cruzi." <i>Sci Rep</i> <b>6</b>:31078; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27492267 27492267]; doi: [https://dx.doi.org/10.1038/srep31078 10.1038/srep31078]; GPMDB: [http://gpmdb.org/data/keyword/27492267 12]. | #Roberts AJ, Fairlamb AH, (2016) "The N-myristoylome of Trypanosoma cruzi." <i>Sci Rep</i> <b>6</b>:31078; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27492267 27492267]; doi: [https://dx.doi.org/10.1038/srep31078 10.1038/srep31078]; GPMDB: [http://gpmdb.org/data/keyword/27492267 12]. | ||
#Dubois ML, Bastin C, Lévesque D, Boisvert FM, (2016) "Comprehensive Characterization of Minichromosome Maintenance Complex (MCM) Protein Interactions Using Affinity and Proximity Purifications Coupled to Mass Spectrometry." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27494197 27494197]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b01081 10.1021/acs.jproteome.5b01081]; GPMDB: [http://gpmdb.org/data/keyword/27494197 109]. | #Dubois ML, Bastin C, Lévesque D, Boisvert FM, (2016) "Comprehensive Characterization of Minichromosome Maintenance Complex (MCM) Protein Interactions Using Affinity and Proximity Purifications Coupled to Mass Spectrometry." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27494197 27494197]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b01081 10.1021/acs.jproteome.5b01081]; GPMDB: [http://gpmdb.org/data/keyword/27494197 109]. | ||
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+ | #Marino F, Mommen GP, Jeko A, Meiring HD, van Gaans-van den Brink JA, Scheltema RA, van Els CA, Heck AJ, (2016) "Arginine (Di)methylated Human Leukocyte Antigen Class I Peptides Are Favorably Presented by HLA-B*07." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27503676 27503676]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00528 10.1021/acs.jproteome.6b00528]; GPMDB: [http://gpmdb.org/data/keyword/27503676 31]. | ||
#Budayeva HG, Cristea IM, (2016) "Human sirtuin 2 localization, transient interactions, and impact on the proteome point to its role in intracellular trafficking." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27503897 27503897]; doi: [https://dx.doi.org/10.1074/mcp.M116.061333 10.1074/mcp.M116.061333]; GPMDB: [http://gpmdb.org/data/keyword/27503897 15]. | #Budayeva HG, Cristea IM, (2016) "Human sirtuin 2 localization, transient interactions, and impact on the proteome point to its role in intracellular trafficking." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27503897 27503897]; doi: [https://dx.doi.org/10.1074/mcp.M116.061333 10.1074/mcp.M116.061333]; GPMDB: [http://gpmdb.org/data/keyword/27503897 15]. | ||
+ | #Swenson JM, Colmenares SU, Strom AR, Costes SV, Karpen GH, (2016) "The composition and organization of Drosophila heterochromatin are heterogeneous and dynamic." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27514026 27514026]; doi: [https://dx.doi.org/10.7554/eLife.16096 10.7554/eLife.16096]; GPMDB: [http://gpmdb.org/data/keyword/27514026 4]. | ||
#Rasmussen MH, Lyskjær I, Jersie-Christensen RR, Tarpgaard LS, Primdal-Bengtson B, Nielsen MM, Pedersen JS, Hansen TP, Hansen F, Olsen JV, Pfeiffer P, Ørntoft TF, Andersen CL, (2016) "miR-625-3p regulates oxaliplatin resistance by targeting MAP2K6-p38 signalling in human colorectal adenocarcinoma cells." <i>Nat Commun</i> <b>7</b>:12436; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27526785 27526785]; doi: [https://dx.doi.org/10.1038/ncomms12436 10.1038/ncomms12436]; GPMDB: [http://gpmdb.org/data/keyword/27526785 24]. | #Rasmussen MH, Lyskjær I, Jersie-Christensen RR, Tarpgaard LS, Primdal-Bengtson B, Nielsen MM, Pedersen JS, Hansen TP, Hansen F, Olsen JV, Pfeiffer P, Ørntoft TF, Andersen CL, (2016) "miR-625-3p regulates oxaliplatin resistance by targeting MAP2K6-p38 signalling in human colorectal adenocarcinoma cells." <i>Nat Commun</i> <b>7</b>:12436; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27526785 27526785]; doi: [https://dx.doi.org/10.1038/ncomms12436 10.1038/ncomms12436]; GPMDB: [http://gpmdb.org/data/keyword/27526785 24]. | ||
+ | #Liu L, Phua YW, Lee RS, Ma X, Jenkins Y, Novy K, Humphrey ES, Chan H, Shearer R, Ong PC, Dai W, Saunders DN, Lucet IS, Daly RJ, (2016) "Homo- and Heterotypic Association Regulates Signalling by the SgK269/PEAK1 and SgK223 Pseudokinases." <i>J Biol Chem</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27531744 27531744]; doi: [https://dx.doi.org/10.1074/jbc.M116.748897 10.1074/jbc.M116.748897]; GPMDB: [http://gpmdb.org/data/keyword/27531744 6]. | ||
+ | #Mattei B, Spinelli F, Pontiggia D, De Lorenzo G, (2016) "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana." <i>Front Plant Sci</i> <b>7</b>:1107; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27532006 27532006]; doi: [https://dx.doi.org/10.3389/fpls.2016.01107 10.3389/fpls.2016.01107]; GPMDB: [http://gpmdb.org/data/keyword/27532006 12]. | ||
+ | #Dobó J, Szakács D, Oroszlán G, Kortvely E, Kiss B, Boros E, Szász R, Závodszky P, Gál P, Pál G, (2016) "MASP-3 is the exclusive pro-factor D activator in resting blood: the lectin and the alternative complement pathways are fundamentally linked." <i>Sci Rep</i> <b>6</b>:31877; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27535802 27535802]; doi: [https://dx.doi.org/10.1038/srep31877 10.1038/srep31877]; GPMDB: [http://gpmdb.org/data/keyword/27535802 6]. |
GPMDB was originally constructed to serve as a reference work for all publicly available proteomics generated using tandem mass spectrometry. Public data is downloaded and reanalyzed using the current version of X! Tandem. The result files generated by the reanalysis and the relevant metadata are imported into the database and made available through the associated web site, ftp site and REST interfaces.
Contents |
The following public data repositories are checked daily for new suitable raw data for reanalysis:
Data made available from specific large projects, such as CPTAC or the Human Proteome Atlas, are also included when they are made available. Every effort is made so that reanalyzed results from all data sources are made available within 48 hours of their being released. In addition, data from lab web sites, ftp sites and direct contributions through the GPM sites made available to researchers are imported into GPMDB as part of a daily incremental update process.
GPMDB has been in operation since Jan. 1, 2004. Several large data source repositories have come into existence and ceased activity in the period since that time. All of the data from those repositories (e.g., TRANCHE, Peptidome) were reanalyzed and stored in GPMDB and they are still available even though the source repository sites are no longer active.
Simply because data is made available does not mean that it will be included in GPMDB. The data must pass our internal automated quality control tests for its initial acceptance and it may be rejected subsequently because of either quality or originality concerns.
The following is a list of data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list (1,238 publications) was current, as of August 28, 2016.