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==Data from publications== | ==Data from publications== | ||
- | The following is a list of data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list was current, as of June | + | The following is a list of data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list was current, as of June 30, 2019. |
#Lipton MS, Pasa-Tolic' L, Anderson GA, Anderson DJ, Auberry DL, Battista JR, Daly MJ, Fredrickson J, Hixson KK, Kostandarithes H, Masselon C, Markillie LM, Moore RJ, Romine MF, Shen Y, Stritmatter E, Tolic' N, Udseth HR, Venkateswaran A, Wong KK, Zhao R, Smith RD, (2002) "Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags." <i>Proc Natl Acad Sci U S A</i> <b>99</b>(17):11049–54; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/12177431 12177431]; doi: [https://dx.doi.org/10.1073/pnas.172170199 10.1073/pnas.172170199]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/12177431 498]. | #Lipton MS, Pasa-Tolic' L, Anderson GA, Anderson DJ, Auberry DL, Battista JR, Daly MJ, Fredrickson J, Hixson KK, Kostandarithes H, Masselon C, Markillie LM, Moore RJ, Romine MF, Shen Y, Stritmatter E, Tolic' N, Udseth HR, Venkateswaran A, Wong KK, Zhao R, Smith RD, (2002) "Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags." <i>Proc Natl Acad Sci U S A</i> <b>99</b>(17):11049–54; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/12177431 12177431]; doi: [https://dx.doi.org/10.1073/pnas.172170199 10.1073/pnas.172170199]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/12177431 498]. | ||
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#Han D, Jin J, Woo J, Min H, Kim Y, (2014) "Proteomic analysis of mouse astrocytes and their secretome by a combination of FASP and StageTip-based, high pH, reversed-phase fractionation." <i>Proteomics</i> <b>14</b>(13-14):1604–9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24753479 24753479]; doi: [https://dx.doi.org/10.1002/pmic.201300495 10.1002/pmic.201300495]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24753479 107]. | #Han D, Jin J, Woo J, Min H, Kim Y, (2014) "Proteomic analysis of mouse astrocytes and their secretome by a combination of FASP and StageTip-based, high pH, reversed-phase fractionation." <i>Proteomics</i> <b>14</b>(13-14):1604–9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24753479 24753479]; doi: [https://dx.doi.org/10.1002/pmic.201300495 10.1002/pmic.201300495]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24753479 107]. | ||
#Chiasserini D, van Weering JR, Piersma SR, Pham TV, Malekzadeh A, Teunissen CE, de Wit H, Jiménez CR, (2014) "Proteomic analysis of cerebrospinal fluid extracellular vesicles: a comprehensive dataset." <i>J Proteomics</i> <b>106</b>:191–204; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24769233 24769233]; doi: [https://dx.doi.org/10.1016/j.jprot.2014.04.028 10.1016/j.jprot.2014.04.028]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24769233 36]. | #Chiasserini D, van Weering JR, Piersma SR, Pham TV, Malekzadeh A, Teunissen CE, de Wit H, Jiménez CR, (2014) "Proteomic analysis of cerebrospinal fluid extracellular vesicles: a comprehensive dataset." <i>J Proteomics</i> <b>106</b>:191–204; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24769233 24769233]; doi: [https://dx.doi.org/10.1016/j.jprot.2014.04.028 10.1016/j.jprot.2014.04.028]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24769233 36]. | ||
+ | #Renvoisé M, Bonhomme L, Davanture M, Valot B, Zivy M, Lemaire C, (2014) "Quantitative variations of the mitochondrial proteome and phosphoproteome during fermentative and respiratory growth in Saccharomyces cerevisiae." <i>J Proteomics</i> <b>106</b>:140–50; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24769239 24769239]; doi: [https://dx.doi.org/10.1016/j.jprot.2014.04.022 10.1016/j.jprot.2014.04.022]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24769239 48]. | ||
#Eravci M, Sommer C, Selbach M, (2014) "IPG strip-based peptide fractionation for shotgun proteomics." <i>Methods Mol Biol</i> <b>1156</b>:67–77; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24791982 24791982]; doi: [https://dx.doi.org/10.1007/978-1-4939-0685-7_5 10.1007/978-1-4939-0685-7_5]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24791982 41]. | #Eravci M, Sommer C, Selbach M, (2014) "IPG strip-based peptide fractionation for shotgun proteomics." <i>Methods Mol Biol</i> <b>1156</b>:67–77; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24791982 24791982]; doi: [https://dx.doi.org/10.1007/978-1-4939-0685-7_5 10.1007/978-1-4939-0685-7_5]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24791982 41]. | ||
#Güther ML, Urbaniak MD, Tavendale A, Prescott A, Ferguson MA, (2014) "High-confidence glycosome proteome for procyclic form Trypanosoma brucei by epitope-tag organelle enrichment and SILAC proteomics." <i>J Proteome Res</i> <b>13</b>(6):2796–806; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24792668 24792668]; doi: [https://dx.doi.org/10.1021/pr401209w 10.1021/pr401209w]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24792668 154]. | #Güther ML, Urbaniak MD, Tavendale A, Prescott A, Ferguson MA, (2014) "High-confidence glycosome proteome for procyclic form Trypanosoma brucei by epitope-tag organelle enrichment and SILAC proteomics." <i>J Proteome Res</i> <b>13</b>(6):2796–806; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/24792668 24792668]; doi: [https://dx.doi.org/10.1021/pr401209w 10.1021/pr401209w]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/24792668 154]. | ||
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#Avenarius MR, Krey JF, Dumont RA, Morgan CP, Benson CB, Vijayakumar S, Cunningham CL, Scheffer DI, Corey DP, Müller U, Jones SM, Barr-Gillespie PG, (2017) "Heterodimeric capping protein is required for stereocilia length and width regulation." <i>J Cell Biol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28899994 28899994]; doi: [https://dx.doi.org/10.1083/jcb.201704171 10.1083/jcb.201704171]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28899994 52]. | #Avenarius MR, Krey JF, Dumont RA, Morgan CP, Benson CB, Vijayakumar S, Cunningham CL, Scheffer DI, Corey DP, Müller U, Jones SM, Barr-Gillespie PG, (2017) "Heterodimeric capping protein is required for stereocilia length and width regulation." <i>J Cell Biol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28899994 28899994]; doi: [https://dx.doi.org/10.1083/jcb.201704171 10.1083/jcb.201704171]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28899994 52]. | ||
#Rowland EA, Greco TM, Snowden CK, McCabe AL, Silhavy TJ, Cristea IM, (2017) "Sirtuin Lipoamidase Activity Is Conserved in Bacteria as a Regulator of Metabolic Enzyme Complexes." <i>MBio</i> <b>8</b>(5):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28900027 28900027]; doi: [https://dx.doi.org/10.1128/mBio.01096-17 10.1128/mBio.01096-17]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28900027 2]. | #Rowland EA, Greco TM, Snowden CK, McCabe AL, Silhavy TJ, Cristea IM, (2017) "Sirtuin Lipoamidase Activity Is Conserved in Bacteria as a Regulator of Metabolic Enzyme Complexes." <i>MBio</i> <b>8</b>(5):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28900027 28900027]; doi: [https://dx.doi.org/10.1128/mBio.01096-17 10.1128/mBio.01096-17]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28900027 2]. | ||
+ | #Midgett M, López CS, David L, Maloyan A, Rugonyi S, (2017) "Increased Hemodynamic Load in Early Embryonic Stages Alters Myofibril and Mitochondrial Organization in the Myocardium." <i>Front Physiol</i> <b>8</b>:631; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28912723 28912723]; doi: [https://dx.doi.org/10.3389/fphys.2017.00631 10.3389/fphys.2017.00631]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28912723 1]. | ||
#Hospital MA, Jacquel A, Mazed F, Saland E, Larrue C, Mondesir J, Birsen R, Green AS, Lambert M, Sujobert P, Gautier EF, Salnot V, Le Gall M, Decroocq J, Poulain L, Jacque N, Fontenay M, Kosmider O, Récher C, Auberger P, Mayeux P, Bouscary D, Sarry JE, Tamburini J, (2017) "RSK2 is a new Pim2 target with pro-survival functions in FLT3-ITD-positive acute myeloid leukemia." <i>Leukemia</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28914261 28914261]; doi: [https://dx.doi.org/10.1038/leu.2017.284 10.1038/leu.2017.284]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28914261 17]. | #Hospital MA, Jacquel A, Mazed F, Saland E, Larrue C, Mondesir J, Birsen R, Green AS, Lambert M, Sujobert P, Gautier EF, Salnot V, Le Gall M, Decroocq J, Poulain L, Jacque N, Fontenay M, Kosmider O, Récher C, Auberger P, Mayeux P, Bouscary D, Sarry JE, Tamburini J, (2017) "RSK2 is a new Pim2 target with pro-survival functions in FLT3-ITD-positive acute myeloid leukemia." <i>Leukemia</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28914261 28914261]; doi: [https://dx.doi.org/10.1038/leu.2017.284 10.1038/leu.2017.284]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28914261 17]. | ||
#Tain LS, Sehlke R, Jain C, Chokkalingam M, Nagaraj N, Essers P, Rassner M, Grönke S, Froelich J, Dieterich C, Mann M, Alic N, Beyer A, Partridge L, (2017) "A proteomic atlas of insulin signalling reveals tissue-specific mechanisms of longevity assurance." <i>Mol Syst Biol</i> <b>13</b>(9):939; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28916541 28916541]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28916541 92]. | #Tain LS, Sehlke R, Jain C, Chokkalingam M, Nagaraj N, Essers P, Rassner M, Grönke S, Froelich J, Dieterich C, Mann M, Alic N, Beyer A, Partridge L, (2017) "A proteomic atlas of insulin signalling reveals tissue-specific mechanisms of longevity assurance." <i>Mol Syst Biol</i> <b>13</b>(9):939; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28916541 28916541]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/28916541 92]. | ||
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#Carette X, Platig J, Young DC, Helmel M, Young AT, Wang Z, Potluri LP, Moody CS, Zeng J, Prisic S, Paulson JN, Muntel J, Madduri AVR, Velarde J, Mayfield JA, Locher C, Wang T, Quackenbush J, Rhee KY, Moody DB, Steen H, Husson RN, (2018) "Multisystem Analysis of <i>Mycobacterium tuberculosis</i> Reveals Kinase-Dependent Remodeling of the Pathogen-Environment Interface." <i>MBio</i> <b>9</b>(2):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29511081 29511081]; doi: [https://dx.doi.org/10.1128/mBio.02333-17 10.1128/mBio.02333-17]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29511081 48]. | #Carette X, Platig J, Young DC, Helmel M, Young AT, Wang Z, Potluri LP, Moody CS, Zeng J, Prisic S, Paulson JN, Muntel J, Madduri AVR, Velarde J, Mayfield JA, Locher C, Wang T, Quackenbush J, Rhee KY, Moody DB, Steen H, Husson RN, (2018) "Multisystem Analysis of <i>Mycobacterium tuberculosis</i> Reveals Kinase-Dependent Remodeling of the Pathogen-Environment Interface." <i>MBio</i> <b>9</b>(2):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29511081 29511081]; doi: [https://dx.doi.org/10.1128/mBio.02333-17 10.1128/mBio.02333-17]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29511081 48]. | ||
#Iradi MCG, Triplett JC, Thomas JD, Davila R, Crown AM, Brown H, Lewis J, Swanson MS, Xu G, Rodriguez-Lebron E, Borchelt DR, (2018) "Characterization of gene regulation and protein interaction networks for Matrin 3 encoding mutations linked to amyotrophic lateral sclerosis and myopathy." <i>Sci Rep</i> <b>8</b>(1):4049; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29511296 29511296]; doi: [https://dx.doi.org/10.1038/s41598-018-21371-4 10.1038/s41598-018-21371-4]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29511296 23]. | #Iradi MCG, Triplett JC, Thomas JD, Davila R, Crown AM, Brown H, Lewis J, Swanson MS, Xu G, Rodriguez-Lebron E, Borchelt DR, (2018) "Characterization of gene regulation and protein interaction networks for Matrin 3 encoding mutations linked to amyotrophic lateral sclerosis and myopathy." <i>Sci Rep</i> <b>8</b>(1):4049; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29511296 29511296]; doi: [https://dx.doi.org/10.1038/s41598-018-21371-4 10.1038/s41598-018-21371-4]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29511296 23]. | ||
+ | #Evans PR, Gerber KJ, Dammer EB, Duong DM, Goswami D, Lustberg DJ, Zou J, Yang JJ, Dudek SM, Griffin PR, Seyfried NT, Hepler JR, (2018) "Interactome Analysis Reveals Regulator of G Protein Signaling 14 (RGS14) is a Novel Calcium/Calmodulin (Ca<sup>2+</sup>/CaM) and CaM Kinase II (CaMKII) Binding Partner." <i>J Proteome Res</i> <b>17</b>(4):1700–1711; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29518331 29518331]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00027 10.1021/acs.jproteome.8b00027]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29518331 6]. | ||
#Ge S, Xia X, Ding C, Zhen B, Zhou Q, Feng J, Yuan J, Chen R, Li Y, Ge Z, Ji J, Zhang L, Wang J, Li Z, Lai Y, Hu Y, Li Y, Li Y, Gao J, Chen L, Xu J, Zhang C, Jung SY, Choi JM, Jain A, Liu M, Song L, Liu W, Guo G, Gong T, Huang Y, Qiu Y, Huang W, Shi T, Zhu W, Wang Y, He F, Shen L, Qin J, (2018) "A proteomic landscape of diffuse-type gastric cancer." <i>Nat Commun</i> <b>9</b>(1):1012; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29520031 29520031]; doi: [https://dx.doi.org/10.1038/s41467-018-03121-2 10.1038/s41467-018-03121-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29520031 164]. | #Ge S, Xia X, Ding C, Zhen B, Zhou Q, Feng J, Yuan J, Chen R, Li Y, Ge Z, Ji J, Zhang L, Wang J, Li Z, Lai Y, Hu Y, Li Y, Li Y, Gao J, Chen L, Xu J, Zhang C, Jung SY, Choi JM, Jain A, Liu M, Song L, Liu W, Guo G, Gong T, Huang Y, Qiu Y, Huang W, Shi T, Zhu W, Wang Y, He F, Shen L, Qin J, (2018) "A proteomic landscape of diffuse-type gastric cancer." <i>Nat Commun</i> <b>9</b>(1):1012; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29520031 29520031]; doi: [https://dx.doi.org/10.1038/s41467-018-03121-2 10.1038/s41467-018-03121-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29520031 164]. | ||
#Ojalill M, Rappu P, Siljamäki E, Taimen P, Boström P, Heino J, (2018) "The composition of prostate core matrisome in vivo and in vitro unveiled by mass spectrometric analysis." <i>Prostate</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29520855 29520855]; doi: [https://dx.doi.org/10.1002/pros.23503 10.1002/pros.23503]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29520855 62]. | #Ojalill M, Rappu P, Siljamäki E, Taimen P, Boström P, Heino J, (2018) "The composition of prostate core matrisome in vivo and in vitro unveiled by mass spectrometric analysis." <i>Prostate</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29520855 29520855]; doi: [https://dx.doi.org/10.1002/pros.23503 10.1002/pros.23503]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29520855 62]. | ||
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#Costanza B, Turtoi A, Bellahcène A, Hirano T, Peulen O, Blomme A, Hennequière V, Mutijima E, Boniver J, Meuwis MA, Josse C, Koopmansch B, Segers K, Yokobori T, Fahmy K, Thiry M, Coimbra C, Garbacki N, Colige A, Baiwir D, Bours V, Louis E, Detry O, Delvenne P, Nishiyama M, Castronovo V, (2018) "Innovative methodology for the identification of soluble biomarkers in fresh tissues." <i>Oncotarget</i> <b>9</b>(12):10665–10680; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29535834 29535834]; doi: [https://dx.doi.org/10.18632/oncotarget.24366 10.18632/oncotarget.24366]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29535834 15]. | #Costanza B, Turtoi A, Bellahcène A, Hirano T, Peulen O, Blomme A, Hennequière V, Mutijima E, Boniver J, Meuwis MA, Josse C, Koopmansch B, Segers K, Yokobori T, Fahmy K, Thiry M, Coimbra C, Garbacki N, Colige A, Baiwir D, Bours V, Louis E, Detry O, Delvenne P, Nishiyama M, Castronovo V, (2018) "Innovative methodology for the identification of soluble biomarkers in fresh tissues." <i>Oncotarget</i> <b>9</b>(12):10665–10680; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29535834 29535834]; doi: [https://dx.doi.org/10.18632/oncotarget.24366 10.18632/oncotarget.24366]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29535834 15]. | ||
#Zila N, Bileck A, Muqaku B, Janker L, Eichhoff OM, Cheng PF, Dummer R, Levesque MP, Gerner C, Paulitschke V, (2018) "Proteomics-based insights into mitogen-activated protein kinase inhibitor resistance of cerebral melanoma metastases." <i>Clin Proteomics</i> <b>15</b>:13; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29541007 29541007]; doi: [https://dx.doi.org/10.1186/s12014-018-9189-x 10.1186/s12014-018-9189-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29541007 36]. | #Zila N, Bileck A, Muqaku B, Janker L, Eichhoff OM, Cheng PF, Dummer R, Levesque MP, Gerner C, Paulitschke V, (2018) "Proteomics-based insights into mitogen-activated protein kinase inhibitor resistance of cerebral melanoma metastases." <i>Clin Proteomics</i> <b>15</b>:13; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29541007 29541007]; doi: [https://dx.doi.org/10.1186/s12014-018-9189-x 10.1186/s12014-018-9189-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29541007 36]. | ||
+ | #Huang X, Zhu H, Gao Z, Li J, Zhuang J, Dong Y, Shen B, Li M, Zhou H, Guo H, Huang R, Yan J, (2018) "Wnt7a activates canonical Wnt signaling, promotes bladder cancer cell invasion, and is suppressed by miR-370-3p." <i>J Biol Chem</i> <b>293</b>(18):6693–6706; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29549123 29549123]; doi: [https://dx.doi.org/10.1074/jbc.RA118.001689 10.1074/jbc.RA118.001689]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29549123 1]. | ||
#Savitski MM, Zinn N, Faelth-Savitski M, Poeckel D, Gade S, Becher I, Muelbaier M, Wagner AJ, Strohmer K, Werner T, Melchert S, Petretich M, Rutkowska A, Vappiani J, Franken H, Steidel M, Sweetman GM, Gilan O, Lam EYN, Dawson MA, Prinjha RK, Grandi P, Bergamini G, Bantscheff M, (2018) "Multiplexed Proteome Dynamics Profiling Reveals Mechanisms Controlling Protein Homeostasis." <i>Cell</i> <b>173</b>(1):260–274.e25; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29551266 29551266]; doi: [https://dx.doi.org/10.1016/j.cell.2018.02.030 10.1016/j.cell.2018.02.030]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29551266 5]. | #Savitski MM, Zinn N, Faelth-Savitski M, Poeckel D, Gade S, Becher I, Muelbaier M, Wagner AJ, Strohmer K, Werner T, Melchert S, Petretich M, Rutkowska A, Vappiani J, Franken H, Steidel M, Sweetman GM, Gilan O, Lam EYN, Dawson MA, Prinjha RK, Grandi P, Bergamini G, Bantscheff M, (2018) "Multiplexed Proteome Dynamics Profiling Reveals Mechanisms Controlling Protein Homeostasis." <i>Cell</i> <b>173</b>(1):260–274.e25; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29551266 29551266]; doi: [https://dx.doi.org/10.1016/j.cell.2018.02.030 10.1016/j.cell.2018.02.030]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29551266 5]. | ||
#Salunkhe V, De Cuyper IM, Papadopoulos P, van der Meer PF, Daal BB, Villa-Fajardo M, de Korte D, van den Berg TK, Gutiérrez L, (2018) "A comprehensive proteomics study on platelet concentrates: Platelet proteome, storage time and Mirasol pathogen reduction technology." <i>Platelets</i> <b></b>:1–12; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29553857 29553857]; doi: [https://dx.doi.org/10.1080/09537104.2018.1447658 10.1080/09537104.2018.1447658]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29553857 27]. | #Salunkhe V, De Cuyper IM, Papadopoulos P, van der Meer PF, Daal BB, Villa-Fajardo M, de Korte D, van den Berg TK, Gutiérrez L, (2018) "A comprehensive proteomics study on platelet concentrates: Platelet proteome, storage time and Mirasol pathogen reduction technology." <i>Platelets</i> <b></b>:1–12; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/29553857 29553857]; doi: [https://dx.doi.org/10.1080/09537104.2018.1447658 10.1080/09537104.2018.1447658]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/29553857 27]. | ||
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#Ten-Doménech I, Simó-Alfonso EF, Herrero-Martínez JM, (2018) "Improving Fractionation of Human Milk Proteins through Calcium Phosphate Coprecipitation and Their Rapid Characterization by Capillary Electrophoresis." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30156851 30156851]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00526 10.1021/acs.jproteome.8b00526]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30156851 26]. | #Ten-Doménech I, Simó-Alfonso EF, Herrero-Martínez JM, (2018) "Improving Fractionation of Human Milk Proteins through Calcium Phosphate Coprecipitation and Their Rapid Characterization by Capillary Electrophoresis." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30156851 30156851]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00526 10.1021/acs.jproteome.8b00526]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30156851 26]. | ||
#Carnielli CM, Macedo CCS, De Rossi T, Granato DC, Rivera C, Domingues RR, Pauletti BA, Yokoo S, Heberle H, Busso-Lopes AF, Cervigne NK, Sawazaki-Calone I, Meirelles GV, Marchi FA, Telles GP, Minghim R, Ribeiro ACP, Brandão TB, de Castro G Jr, González-Arriagada WA, Gomes A, Penteado F, Santos-Silva AR, Lopes MA, Rodrigues PC, Sundquist E, Salo T, da Silva SD, Alaoui-Jamali MA, Graner E, Fox JW, Coletta RD, Paes Leme AF, (2018) "Combining discovery and targeted proteomics reveals a prognostic signature in oral cancer." <i>Nat Commun</i> <b>9</b>(1):3598; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30185791 30185791]; doi: [https://dx.doi.org/10.1038/s41467-018-05696-2 10.1038/s41467-018-05696-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30185791 122]. | #Carnielli CM, Macedo CCS, De Rossi T, Granato DC, Rivera C, Domingues RR, Pauletti BA, Yokoo S, Heberle H, Busso-Lopes AF, Cervigne NK, Sawazaki-Calone I, Meirelles GV, Marchi FA, Telles GP, Minghim R, Ribeiro ACP, Brandão TB, de Castro G Jr, González-Arriagada WA, Gomes A, Penteado F, Santos-Silva AR, Lopes MA, Rodrigues PC, Sundquist E, Salo T, da Silva SD, Alaoui-Jamali MA, Graner E, Fox JW, Coletta RD, Paes Leme AF, (2018) "Combining discovery and targeted proteomics reveals a prognostic signature in oral cancer." <i>Nat Commun</i> <b>9</b>(1):3598; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30185791 30185791]; doi: [https://dx.doi.org/10.1038/s41467-018-05696-2 10.1038/s41467-018-05696-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30185791 122]. | ||
+ | #Abreha MH, Dammer EB, Ping L, Zhang T, Duong DM, Gearing M, Lah JJ, Levey AI, Seyfried NT, (2018) "Quantitative Analysis of the Brain Ubiquitylome in Alzheimer's Disease." <i>Proteomics</i> <b>18</b>(20):e1800108; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30230243 30230243]; doi: [https://dx.doi.org/10.1002/pmic.201800108 10.1002/pmic.201800108]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30230243 29]. | ||
#Finamore F, Reny JL, Malacarne S, Fontana P, Sanchez JC, (2018) "A high glucose level is associated with decreased aspirin-mediated acetylation of platelet cyclooxygenase (COX)-1 at serine 529: A pilot study." <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30240925 30240925]; doi: [https://dx.doi.org/10.1016/j.jprot.2018.09.007 10.1016/j.jprot.2018.09.007]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30240925 18]. | #Finamore F, Reny JL, Malacarne S, Fontana P, Sanchez JC, (2018) "A high glucose level is associated with decreased aspirin-mediated acetylation of platelet cyclooxygenase (COX)-1 at serine 529: A pilot study." <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30240925 30240925]; doi: [https://dx.doi.org/10.1016/j.jprot.2018.09.007 10.1016/j.jprot.2018.09.007]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30240925 18]. | ||
+ | #Ohta S, Taniguchi T, Sato N, Hamada M, Taniguchi H, Rappsilber J, (2019) "Quantitative Proteomics of the Mitotic Chromosome Scaffold Reveals the Association of BAZ1B with Chromosomal Axes." <i>Mol Cell Proteomics</i> <b>18</b>(2):169–181; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30266865 30266865]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000923 10.1074/mcp.RA118.000923]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30266865 3]. | ||
#Sun J, Shi J, Wang Y, Chen Y, Li Y, Kong D, Chang L, Liu F, Lv Z, Zhou Y, He F, Zhang Y, Xu P, (2018) "Multiproteases Combined with High-pH Reverse-Phase Separation Strategy Verified Fourteen Missing Proteins in Human Testis Tissue." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30280576 30280576]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00397 10.1021/acs.jproteome.8b00397]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30280576 108]. | #Sun J, Shi J, Wang Y, Chen Y, Li Y, Kong D, Chang L, Liu F, Lv Z, Zhou Y, He F, Zhang Y, Xu P, (2018) "Multiproteases Combined with High-pH Reverse-Phase Separation Strategy Verified Fourteen Missing Proteins in Human Testis Tissue." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30280576 30280576]; doi: [https://dx.doi.org/10.1021/acs.jproteome.8b00397 10.1021/acs.jproteome.8b00397]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30280576 108]. | ||
#Sepil I, Hopkins BR, Dean R, Thézénas ML, Charles PD, Konietzny R, Fischer R, Kessler B, Wigby S, (2018) "Quantitative proteomics identification of seminal fluid proteins in male <i>Drosophila melanogaster</i>." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30287546 30287546]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000831 10.1074/mcp.RA118.000831]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30287546 87]. | #Sepil I, Hopkins BR, Dean R, Thézénas ML, Charles PD, Konietzny R, Fischer R, Kessler B, Wigby S, (2018) "Quantitative proteomics identification of seminal fluid proteins in male <i>Drosophila melanogaster</i>." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30287546 30287546]; doi: [https://dx.doi.org/10.1074/mcp.RA118.000831 10.1074/mcp.RA118.000831]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30287546 87]. | ||
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#Hansen BK, Gupta R, Baldus L, Lyon D, Narita T, Lammers M, Choudhary C, Weinert BT, (2019) "Analysis of human acetylation stoichiometry defines mechanistic constraints on protein regulation." <i>Nat Commun</i> <b>10</b>(1):1055; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30837475 30837475]; doi: [https://dx.doi.org/10.1038/s41467-019-09024-0 10.1038/s41467-019-09024-0]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30837475 123]. | #Hansen BK, Gupta R, Baldus L, Lyon D, Narita T, Lammers M, Choudhary C, Weinert BT, (2019) "Analysis of human acetylation stoichiometry defines mechanistic constraints on protein regulation." <i>Nat Commun</i> <b>10</b>(1):1055; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30837475 30837475]; doi: [https://dx.doi.org/10.1038/s41467-019-09024-0 10.1038/s41467-019-09024-0]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30837475 123]. | ||
#Marei WFA, Van Raemdonck G, Baggerman G, Bols PEJ, Leroy JLMR, (2019) "Proteomic changes in oocytes after in vitro maturation in lipotoxic conditions are different from those in cumulus cells." <i>Sci Rep</i> <b>9</b>(1):3673; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30842615 30842615]; doi: [https://dx.doi.org/10.1038/s41598-019-40122-7 10.1038/s41598-019-40122-7]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30842615 2]. | #Marei WFA, Van Raemdonck G, Baggerman G, Bols PEJ, Leroy JLMR, (2019) "Proteomic changes in oocytes after in vitro maturation in lipotoxic conditions are different from those in cumulus cells." <i>Sci Rep</i> <b>9</b>(1):3673; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30842615 30842615]; doi: [https://dx.doi.org/10.1038/s41598-019-40122-7 10.1038/s41598-019-40122-7]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30842615 2]. | ||
+ | #Yi L, Tsai CF, Dirice E, Swensen AC, Chen J, Shi T, Gritsenko MA, Chu RK, Piehowski PD, Smith RD, Rodland KD, Atkinson MA, Mathews CE, Kulkarni RN, Liu T, Qian WJ, (2019) "Boosting to Amplify Signal with Isobaric Labeling (BASIL) Strategy for Comprehensive Quantitative Phosphoproteomic Characterization of Small Populations of Cells." <i>Anal Chem</i> <b>91</b>(9):5794–5801; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30843680 30843680]; doi: [https://dx.doi.org/10.1021/acs.analchem.9b00024 10.1021/acs.analchem.9b00024]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30843680 20]. | ||
#Lin YH, Eguez RV, Torralba MG, Singh H, Golusinski P, Golusinski W, Masternak M, Nelson KE, Freire M, Yu Y, (2019) "Self-Assembled STrap for Global Proteomics and Salivary Biomarker Discovery." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30848925 30848925]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00037 10.1021/acs.jproteome.9b00037]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30848925 51]. | #Lin YH, Eguez RV, Torralba MG, Singh H, Golusinski P, Golusinski W, Masternak M, Nelson KE, Freire M, Yu Y, (2019) "Self-Assembled STrap for Global Proteomics and Salivary Biomarker Discovery." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30848925 30848925]; doi: [https://dx.doi.org/10.1021/acs.jproteome.9b00037 10.1021/acs.jproteome.9b00037]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30848925 51]. | ||
#Herbst FA, Gonçalves SCL, Behr T, McIlroy SJ, Nielsen PH, (2019) "Proteogenomic Refinement of the Neomegalonema perideroedes<sup>T</sup> Genome Annotation." <i>Proteomics</i> <b></b>:e1800330; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30865376 30865376]; doi: [https://dx.doi.org/10.1002/pmic.201800330 10.1002/pmic.201800330]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30865376 9]. | #Herbst FA, Gonçalves SCL, Behr T, McIlroy SJ, Nielsen PH, (2019) "Proteogenomic Refinement of the Neomegalonema perideroedes<sup>T</sup> Genome Annotation." <i>Proteomics</i> <b></b>:e1800330; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/30865376 30865376]; doi: [https://dx.doi.org/10.1002/pmic.201800330 10.1002/pmic.201800330]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/30865376 9]. | ||
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#Zhou B, Yan Y, Wang Y, You S, Freeman MR, Yang W, (2019) "Quantitative proteomic analysis of prostate tissue specimens identifies deregulated protein complexes in primary prostate cancer." <i>Clin Proteomics</i> <b>16</b>:15; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31011308 31011308]; doi: [https://dx.doi.org/10.1186/s12014-019-9236-2 10.1186/s12014-019-9236-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31011308 2]. | #Zhou B, Yan Y, Wang Y, You S, Freeman MR, Yang W, (2019) "Quantitative proteomic analysis of prostate tissue specimens identifies deregulated protein complexes in primary prostate cancer." <i>Clin Proteomics</i> <b>16</b>:15; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31011308 31011308]; doi: [https://dx.doi.org/10.1186/s12014-019-9236-2 10.1186/s12014-019-9236-2]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31011308 2]. | ||
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+ | #Masoumi Z, Maes GE, Herten K, Cortés-Calabuig Á, Alattar AG, Hanson E, Erlandsson L, Mezey E, Magnusson M, Vermeesch JR, Familari M, Hansson SR, (2019) "Preeclampsia is Associated with Sex-Specific Transcriptional and Proteomic Changes in Fetal Erythroid Cells." <i>Int J Mol Sci</i> <b>20</b>(8):; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31027199 31027199]; doi: [https://dx.doi.org/10.3390/ijms20082038 10.3390/ijms20082038]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31027199 20]. | ||
#Quintieri L, Zühlke D, Fanelli F, Caputo L, Liuzzi VC, Logrieco AF, Hirschfeld C, Becher D, Riedel K, (2019) "Proteomic analysis of the food spoiler Pseudomonas fluorescens ITEM 17298 reveals the antibiofilm activity of the pepsin-digested bovine lactoferrin." <i>Food Microbiol</i> <b>82</b>:177–193; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31027772 31027772]; doi: [https://dx.doi.org/10.1016/j.fm.2019.02.003 10.1016/j.fm.2019.02.003]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31027772 110]. | #Quintieri L, Zühlke D, Fanelli F, Caputo L, Liuzzi VC, Logrieco AF, Hirschfeld C, Becher D, Riedel K, (2019) "Proteomic analysis of the food spoiler Pseudomonas fluorescens ITEM 17298 reveals the antibiofilm activity of the pepsin-digested bovine lactoferrin." <i>Food Microbiol</i> <b>82</b>:177–193; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31027772 31027772]; doi: [https://dx.doi.org/10.1016/j.fm.2019.02.003 10.1016/j.fm.2019.02.003]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31027772 110]. | ||
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#Chen F, Welker F, Shen CC, Bailey SE, Bergmann I, Davis S, Xia H, Wang H, Fischer R, Freidline SE, Yu TL, Skinner MM, Stelzer S, Dong G, Fu Q, Dong G, Wang J, Zhang D, Hublin JJ, (2019) "A late Middle Pleistocene Denisovan mandible from the Tibetan Plateau." <i>Nature</i> <b>569</b>(7756):409–412; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31043746 31043746]; doi: [https://dx.doi.org/10.1038/s41586-019-1139-x 10.1038/s41586-019-1139-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31043746 8]. | #Chen F, Welker F, Shen CC, Bailey SE, Bergmann I, Davis S, Xia H, Wang H, Fischer R, Freidline SE, Yu TL, Skinner MM, Stelzer S, Dong G, Fu Q, Dong G, Wang J, Zhang D, Hublin JJ, (2019) "A late Middle Pleistocene Denisovan mandible from the Tibetan Plateau." <i>Nature</i> <b>569</b>(7756):409–412; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31043746 31043746]; doi: [https://dx.doi.org/10.1038/s41586-019-1139-x 10.1038/s41586-019-1139-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31043746 8]. | ||
#Dybas JM, O'Leary CE, Ding H, Spruce LA, Seeholzer SH, Oliver PM, (2019) "Integrative proteomics reveals an increase in non-degradative ubiquitylation in activated CD4<sup>+</sup> T cells." <i>Nat Immunol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31061531 31061531]; doi: [https://dx.doi.org/10.1038/s41590-019-0381-6 10.1038/s41590-019-0381-6]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31061531 118]. | #Dybas JM, O'Leary CE, Ding H, Spruce LA, Seeholzer SH, Oliver PM, (2019) "Integrative proteomics reveals an increase in non-degradative ubiquitylation in activated CD4<sup>+</sup> T cells." <i>Nat Immunol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31061531 31061531]; doi: [https://dx.doi.org/10.1038/s41590-019-0381-6 10.1038/s41590-019-0381-6]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31061531 118]. | ||
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#Chu F, Mason KE, Anex DS, Jones AD, Hart BR, (2019) "Hair Proteome Variation at Different Body Locations on Genetically Variant Peptide Detection for Protein-Based Human Identification." <i>Sci Rep</i> <b>9</b>(1):7641; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31113963 31113963]; doi: [https://dx.doi.org/10.1038/s41598-019-44007-7 10.1038/s41598-019-44007-7]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31113963 36]. | #Chu F, Mason KE, Anex DS, Jones AD, Hart BR, (2019) "Hair Proteome Variation at Different Body Locations on Genetically Variant Peptide Detection for Protein-Based Human Identification." <i>Sci Rep</i> <b>9</b>(1):7641; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31113963 31113963]; doi: [https://dx.doi.org/10.1038/s41598-019-44007-7 10.1038/s41598-019-44007-7]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31113963 36]. | ||
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+ | #Wang Y, Tatham MH, Schmidt-Heck W, Swann C, Singh-Dolt K, Meseguer-Ripolles J, Lucendo-Villarin B, Kunath T, Rudd TR, Smith AJH, Hengstler JG, Godoy P, Hay RT, Hay DC, (2019) "Multiomics Analyses of HNF4α Protein Domain Function during Human Pluripotent Stem Cell Differentiation." <i>iScience</i> <b>16</b>:206–217; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31185456 31185456]; doi: [https://dx.doi.org/10.1016/j.isci.2019.05.028 10.1016/j.isci.2019.05.028]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31185456 96]. | ||
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+ | #Abdelhamed S, Butler JT, Doron B, Halse A, Nemecek E, Wilmarth PA, Marks DL, Chang BH, Horton T, Kurre P, (2019) "Extracellular vesicles impose quiescence on residual hematopoietic stem cells in the leukemic niche." <i>EMBO Rep</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31208969 31208969]; doi: [https://dx.doi.org/10.15252/embr.201847546 10.15252/embr.201847546]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31208969 26]. | ||
+ | #Schoor C, Brocke-Ahmadinejad N, Gieselmann V, Winter D, (2019) "Investigation of Oligodendrocyte Precursor Cell Differentiation by Quantitative Proteomics." <i>Proteomics</i> <b></b>:e1900057; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/31216117 31216117]; doi: [https://dx.doi.org/10.1002/pmic.201900057 10.1002/pmic.201900057]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/31216117 5]. |
GPMDB was originally constructed to serve as a reference work for all publicly available proteomics generated using tandem mass spectrometry. Public data is downloaded and reanalyzed using the current version of X! Tandem. The result files generated by the reanalysis and the relevant metadata are imported into the database and made available through the associated web site, ftp site and REST interfaces.
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The following public data repositories are checked daily for new suitable raw data for reanalysis:
Data made available from specific large projects, such as CPTAC or the Human Proteome Atlas, are also included when they are made available. Every effort is made so that reanalyzed results from all data sources are made available within 48 hours of their being released. In addition, data from lab web sites, ftp sites and direct contributions through the GPM sites made available to researchers are imported into GPMDB as part of a daily incremental update process.
GPMDB has been in operation since Jan. 1, 2004. Several large data source repositories have come into existence and ceased activity in the period since that time. All of the data from those repositories (e.g., TRANCHE, Peptidome) were reanalyzed and stored in GPMDB and they are still available even though the source repository sites are no longer active.
Simply because data is made available does not mean that it will be included in GPMDB. The data must be approved our quality control AI for its initial acceptance and it may be rejected subsequently because of either quality or originality concerns.
CAUTION: Many papers contain serious errors in their Methods sections. When using data from the literature, it is important to be skeptical of any experimental parameter (cell line, tissue type, modification reagents, quantitation methoods, etc.) that may impact on your use of the data. We have tried to correct any obvious errors, but there is no way to guarantee that we found them all. When attempting to analyze or reproduce results, keep in mind the likelyhood that even key parts of the experiment methods may have been recorded incorrectly in the associated manuscript, as methods are rarely reviewed properly in the current journal publication process.
The following is a list of data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list was current, as of June 30, 2019.