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==Data from publications== | ==Data from publications== | ||
- | The following is a data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list was current, as of May | + | The following is a data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list was current, as of May 8, 2016. |
#Lipton MS, Pasa-Tolic' L, Anderson GA, Anderson DJ, Auberry DL, Battista JR, Daly MJ, Fredrickson J, Hixson KK, Kostandarithes H, Masselon C, Markillie LM, Moore RJ, Romine MF, Shen Y, Stritmatter E, Tolic' N, Udseth HR, Venkateswaran A, Wong KK, Zhao R, Smith RD, (2002) "Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags." <i>Proc Natl Acad Sci U S A</i> <b>99</b>(17):11049–54; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/12177431 12177431]; doi: [https://dx.doi.org/10.1073/pnas.172170199 10.1073/pnas.172170199]; GPMDB: [http://gpmdb.org/data/keyword/12177431 498]. | #Lipton MS, Pasa-Tolic' L, Anderson GA, Anderson DJ, Auberry DL, Battista JR, Daly MJ, Fredrickson J, Hixson KK, Kostandarithes H, Masselon C, Markillie LM, Moore RJ, Romine MF, Shen Y, Stritmatter E, Tolic' N, Udseth HR, Venkateswaran A, Wong KK, Zhao R, Smith RD, (2002) "Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags." <i>Proc Natl Acad Sci U S A</i> <b>99</b>(17):11049–54; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/12177431 12177431]; doi: [https://dx.doi.org/10.1073/pnas.172170199 10.1073/pnas.172170199]; GPMDB: [http://gpmdb.org/data/keyword/12177431 498]. | ||
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#Elmore JM, Liu J, Smith B, Phinney B, Coaker G, (2012) "Quantitative proteomics reveals dynamic changes in the plasma membrane during Arabidopsis immune signaling." <i>Mol Cell Proteomics</i> <b>11</b>(4):M111.014555; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22215637 22215637]; doi: [https://dx.doi.org/10.1074/mcp.M111.014555 10.1074/mcp.M111.014555]; GPMDB: [http://gpmdb.org/data/keyword/22215637 90]. | #Elmore JM, Liu J, Smith B, Phinney B, Coaker G, (2012) "Quantitative proteomics reveals dynamic changes in the plasma membrane during Arabidopsis immune signaling." <i>Mol Cell Proteomics</i> <b>11</b>(4):M111.014555; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22215637 22215637]; doi: [https://dx.doi.org/10.1074/mcp.M111.014555 10.1074/mcp.M111.014555]; GPMDB: [http://gpmdb.org/data/keyword/22215637 90]. | ||
#König S, Nimtz M, Scheiter M, Ljunggren HG, Bryceson YT, Jänsch L, (2012) "Kinome analysis of receptor-induced phosphorylation in human natural killer cells." <i>PLoS One</i> <b>7</b>(1):e29672; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22238634 22238634]; doi: [https://dx.doi.org/10.1371/journal.pone.0029672 10.1371/journal.pone.0029672]; GPMDB: [http://gpmdb.org/data/keyword/22238634 3]. | #König S, Nimtz M, Scheiter M, Ljunggren HG, Bryceson YT, Jänsch L, (2012) "Kinome analysis of receptor-induced phosphorylation in human natural killer cells." <i>PLoS One</i> <b>7</b>(1):e29672; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22238634 22238634]; doi: [https://dx.doi.org/10.1371/journal.pone.0029672 10.1371/journal.pone.0029672]; GPMDB: [http://gpmdb.org/data/keyword/22238634 3]. | ||
+ | #Al-Hakim AK, Bashkurov M, Gingras AC, Durocher D, Pelletier L, (2012) "Interaction proteomics identify NEURL4 and the HECT E3 ligase HERC2 as novel modulators of centrosome architecture." <i>Mol Cell Proteomics</i> <b>11</b>(6):M111.014233; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22261722 22261722]; doi: [https://dx.doi.org/10.1074/mcp.M111.014233 10.1074/mcp.M111.014233]; GPMDB: [http://gpmdb.org/data/keyword/22261722 18]. | ||
#Franklin S, Chen H, Mitchell-Jordan S, Ren S, Wang Y, Vondriska TM, (2012) "Quantitative analysis of the chromatin proteome in disease reveals remodeling principles and identifies high mobility group protein B2 as a regulator of hypertrophic growth." <i>Mol Cell Proteomics</i> <b>11</b>(6):M111.014258; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22270000 22270000]; doi: [https://dx.doi.org/10.1074/mcp.M111.014258 10.1074/mcp.M111.014258]; GPMDB: [http://gpmdb.org/data/keyword/22270000 75]. | #Franklin S, Chen H, Mitchell-Jordan S, Ren S, Wang Y, Vondriska TM, (2012) "Quantitative analysis of the chromatin proteome in disease reveals remodeling principles and identifies high mobility group protein B2 as a regulator of hypertrophic growth." <i>Mol Cell Proteomics</i> <b>11</b>(6):M111.014258; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22270000 22270000]; doi: [https://dx.doi.org/10.1074/mcp.M111.014258 10.1074/mcp.M111.014258]; GPMDB: [http://gpmdb.org/data/keyword/22270000 75]. | ||
#Capriotti AL, Caracciolo G, Caruso G, Cavaliere C, Pozzi D, Samperi R, Laganà A, (2013) "Label-free quantitative analysis for studying the interactions between nanoparticles and plasma proteins." <i>Anal Bioanal Chem</i> <b>405</b>(2-3):635–45; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22274284 22274284]; doi: [https://dx.doi.org/10.1007/s00216-011-5691-y 10.1007/s00216-011-5691-y]; GPMDB: [http://gpmdb.org/data/keyword/22274284 45]. | #Capriotti AL, Caracciolo G, Caruso G, Cavaliere C, Pozzi D, Samperi R, Laganà A, (2013) "Label-free quantitative analysis for studying the interactions between nanoparticles and plasma proteins." <i>Anal Bioanal Chem</i> <b>405</b>(2-3):635–45; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/22274284 22274284]; doi: [https://dx.doi.org/10.1007/s00216-011-5691-y 10.1007/s00216-011-5691-y]; GPMDB: [http://gpmdb.org/data/keyword/22274284 45]. | ||
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#Selevsek N, Chang CY, Gillet LC, Navarro P, Bernhardt OM, Reiter L, Cheng LY, Vitek O, Aebersold R, (2015) "Reproducible and consistent quantification of the Saccharomyces cerevisiae proteome by SWATH-mass spectrometry." <i>Mol Cell Proteomics</i> <b>14</b>(3):739–49; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25561506 25561506]; doi: [https://dx.doi.org/10.1074/mcp.M113.035550 10.1074/mcp.M113.035550]; GPMDB: [http://gpmdb.org/data/keyword/25561506 46]. | #Selevsek N, Chang CY, Gillet LC, Navarro P, Bernhardt OM, Reiter L, Cheng LY, Vitek O, Aebersold R, (2015) "Reproducible and consistent quantification of the Saccharomyces cerevisiae proteome by SWATH-mass spectrometry." <i>Mol Cell Proteomics</i> <b>14</b>(3):739–49; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25561506 25561506]; doi: [https://dx.doi.org/10.1074/mcp.M113.035550 10.1074/mcp.M113.035550]; GPMDB: [http://gpmdb.org/data/keyword/25561506 46]. | ||
#Kershaw CJ, Costello JL, Castelli LM, Talavera D, Rowe W, Sims PF, Ashe MP, Hubbard SJ, Pavitt GD, Grant CM, (2015) "The yeast La related protein Slf1p is a key activator of translation during the oxidative stress response." <i>PLoS Genet</i> <b>11</b>(1):e1004903; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25569619 25569619]; doi: [https://dx.doi.org/10.1371/journal.pgen.1004903 10.1371/journal.pgen.1004903]; GPMDB: [http://gpmdb.org/data/keyword/25569619 20]. | #Kershaw CJ, Costello JL, Castelli LM, Talavera D, Rowe W, Sims PF, Ashe MP, Hubbard SJ, Pavitt GD, Grant CM, (2015) "The yeast La related protein Slf1p is a key activator of translation during the oxidative stress response." <i>PLoS Genet</i> <b>11</b>(1):e1004903; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25569619 25569619]; doi: [https://dx.doi.org/10.1371/journal.pgen.1004903 10.1371/journal.pgen.1004903]; GPMDB: [http://gpmdb.org/data/keyword/25569619 20]. | ||
+ | #Zappacosta F, Scott GF, Huddleston MJ, Annan RS, (2015) "An optimized platform for hydrophilic interaction chromatography-immobilized metal affinity chromatography enables deep coverage of the rat liver phosphoproteome." <i>J Proteome Res</i> <b>14</b>(2):997–1009; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25575281 25575281]; doi: [https://dx.doi.org/10.1021/pr501025e 10.1021/pr501025e]; GPMDB: [http://gpmdb.org/data/keyword/25575281 28]. | ||
#Bassani-Sternberg M, Pletscher-Frankild S, Jensen LJ, Mann M, (2015) "Mass spectrometry of human leukocyte antigen class I peptidomes reveals strong effects of protein abundance and turnover on antigen presentation." <i>Mol Cell Proteomics</i> <b>14</b>(3):658–73; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25576301 25576301]; doi: [https://dx.doi.org/10.1074/mcp.M114.042812 10.1074/mcp.M114.042812]; GPMDB: [http://gpmdb.org/data/keyword/25576301 40]. | #Bassani-Sternberg M, Pletscher-Frankild S, Jensen LJ, Mann M, (2015) "Mass spectrometry of human leukocyte antigen class I peptidomes reveals strong effects of protein abundance and turnover on antigen presentation." <i>Mol Cell Proteomics</i> <b>14</b>(3):658–73; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25576301 25576301]; doi: [https://dx.doi.org/10.1074/mcp.M114.042812 10.1074/mcp.M114.042812]; GPMDB: [http://gpmdb.org/data/keyword/25576301 40]. | ||
#Chiang DY, Lebesgue N, Beavers DL, Alsina KM, Damen JM, Voigt N, Dobrev D, Wehrens XH, Scholten A, (2015) "Alterations in the interactome of serine/threonine protein phosphatase type-1 in atrial fibrillation patients." <i>J Am Coll Cardiol</i> <b>65</b>(2):163–73; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25593058 25593058]; doi: [https://dx.doi.org/10.1016/j.jacc.2014.10.042 10.1016/j.jacc.2014.10.042]; GPMDB: [http://gpmdb.org/data/keyword/25593058 22]. | #Chiang DY, Lebesgue N, Beavers DL, Alsina KM, Damen JM, Voigt N, Dobrev D, Wehrens XH, Scholten A, (2015) "Alterations in the interactome of serine/threonine protein phosphatase type-1 in atrial fibrillation patients." <i>J Am Coll Cardiol</i> <b>65</b>(2):163–73; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25593058 25593058]; doi: [https://dx.doi.org/10.1016/j.jacc.2014.10.042 10.1016/j.jacc.2014.10.042]; GPMDB: [http://gpmdb.org/data/keyword/25593058 22]. | ||
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#Hu J, Huang X, Chen L, Sun X, Lu C, Zhang L, Wang Y, Zuo J, (2015) "Site-specific nitrosoproteomic identification of endogenously S-nitrosylated proteins in Arabidopsis." <i>Plant Physiol</i> <b>167</b>(4):1731–46; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25699590 25699590]; doi: [https://dx.doi.org/10.1104/pp.15.00026 10.1104/pp.15.00026]; GPMDB: [http://gpmdb.org/data/keyword/25699590 12]. | #Hu J, Huang X, Chen L, Sun X, Lu C, Zhang L, Wang Y, Zuo J, (2015) "Site-specific nitrosoproteomic identification of endogenously S-nitrosylated proteins in Arabidopsis." <i>Plant Physiol</i> <b>167</b>(4):1731–46; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25699590 25699590]; doi: [https://dx.doi.org/10.1104/pp.15.00026 10.1104/pp.15.00026]; GPMDB: [http://gpmdb.org/data/keyword/25699590 12]. | ||
#Peebo K, Valgepea K, Maser A, Nahku R, Adamberg K, Vilu R, (2015) "Proteome reallocation in Escherichia coli with increasing specific growth rate." <i>Mol Biosyst</i> <b>11</b>(4):1184–93; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25712329 25712329]; doi: [https://dx.doi.org/10.1039/c4mb00721b 10.1039/c4mb00721b]; GPMDB: [http://gpmdb.org/data/keyword/25712329 26]. | #Peebo K, Valgepea K, Maser A, Nahku R, Adamberg K, Vilu R, (2015) "Proteome reallocation in Escherichia coli with increasing specific growth rate." <i>Mol Biosyst</i> <b>11</b>(4):1184–93; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25712329 25712329]; doi: [https://dx.doi.org/10.1039/c4mb00721b 10.1039/c4mb00721b]; GPMDB: [http://gpmdb.org/data/keyword/25712329 26]. | ||
+ | #Koganti S, Clark C, Zhi J, Li X, Chen EI, Chakrabortty S, Hill ER, Bhaduri-McIntosh S, (2015) "Cellular STAT3 functions via PCBP2 to restrain Epstein-Barr Virus lytic activation in B lymphocytes." <i>J Virol</i> <b>89</b>(9):5002–11; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25717101 25717101]; doi: [https://dx.doi.org/10.1128/JVI.00121-15 10.1128/JVI.00121-15]; GPMDB: [http://gpmdb.org/data/keyword/25717101 2]. | ||
#Kettenbach AN, Deng L, Wu Y, Baldissard S, Adamo ME, Gerber SA, Moseley JB, (2015) "Quantitative phosphoproteomics reveals pathways for coordination of cell growth and division by the conserved fission yeast kinase pom1." <i>Mol Cell Proteomics</i> <b>14</b>(5):1275–87; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25720772 25720772]; doi: [https://dx.doi.org/10.1074/mcp.M114.045245 10.1074/mcp.M114.045245]; GPMDB: [http://gpmdb.org/data/keyword/25720772 96]. | #Kettenbach AN, Deng L, Wu Y, Baldissard S, Adamo ME, Gerber SA, Moseley JB, (2015) "Quantitative phosphoproteomics reveals pathways for coordination of cell growth and division by the conserved fission yeast kinase pom1." <i>Mol Cell Proteomics</i> <b>14</b>(5):1275–87; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25720772 25720772]; doi: [https://dx.doi.org/10.1074/mcp.M114.045245 10.1074/mcp.M114.045245]; GPMDB: [http://gpmdb.org/data/keyword/25720772 96]. | ||
#González-Prieto R, Cuijpers SA, Luijsterburg MS, van Attikum H, Vertegaal AC, (2015) "SUMOylation and PARylation cooperate to recruit and stabilize SLX4 at DNA damage sites." <i>EMBO Rep</i> <b>16</b>(4):512–9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25722289 25722289]; doi: [https://dx.doi.org/10.15252/embr.201440017 10.15252/embr.201440017]; GPMDB: [http://gpmdb.org/data/keyword/25722289 27]. | #González-Prieto R, Cuijpers SA, Luijsterburg MS, van Attikum H, Vertegaal AC, (2015) "SUMOylation and PARylation cooperate to recruit and stabilize SLX4 at DNA damage sites." <i>EMBO Rep</i> <b>16</b>(4):512–9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/25722289 25722289]; doi: [https://dx.doi.org/10.15252/embr.201440017 10.15252/embr.201440017]; GPMDB: [http://gpmdb.org/data/keyword/25722289 27]. | ||
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#Toledo A, Pérez A, Coleman JL, Benach JL, (2015) "The lipid raft proteome of Borrelia burgdorferi." <i>Proteomics</i> <b>15</b>(21):3662–75; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26256460 26256460]; doi: [https://dx.doi.org/10.1002/pmic.201500093 10.1002/pmic.201500093]; GPMDB: [http://gpmdb.org/data/keyword/26256460 18]. | #Toledo A, Pérez A, Coleman JL, Benach JL, (2015) "The lipid raft proteome of Borrelia burgdorferi." <i>Proteomics</i> <b>15</b>(21):3662–75; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26256460 26256460]; doi: [https://dx.doi.org/10.1002/pmic.201500093 10.1002/pmic.201500093]; GPMDB: [http://gpmdb.org/data/keyword/26256460 18]. | ||
#Kwon OK, Lee W, Kim SJ, Lee YM, Lee JY, Kim JY, Bae JS, Lee S, (2015) "In-depth proteomics approach of secretome to identify novel biomarker for sepsis in LPS-stimulated endothelial cells." <i>Electrophoresis</i> <b>36</b>(23):2851–8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26257168 26257168]; doi: [https://dx.doi.org/10.1002/elps.201500198 10.1002/elps.201500198]; GPMDB: [http://gpmdb.org/data/keyword/26257168 4]. | #Kwon OK, Lee W, Kim SJ, Lee YM, Lee JY, Kim JY, Bae JS, Lee S, (2015) "In-depth proteomics approach of secretome to identify novel biomarker for sepsis in LPS-stimulated endothelial cells." <i>Electrophoresis</i> <b>36</b>(23):2851–8; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26257168 26257168]; doi: [https://dx.doi.org/10.1002/elps.201500198 10.1002/elps.201500198]; GPMDB: [http://gpmdb.org/data/keyword/26257168 4]. | ||
+ | #He P, Zhao L, Zhu L, Weinman EJ, De Giorgio R, Koval M, Srinivasan S, Yun CC, (2015) "Restoration of Na+/H+ exchanger NHE3-containing macrocomplexes ameliorates diabetes-associated fluid loss." <i>J Clin Invest</i> <b>125</b>(9):3519–31; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26258413 26258413]; doi: [https://dx.doi.org/10.1172/JCI79552 10.1172/JCI79552]; GPMDB: [http://gpmdb.org/data/keyword/26258413 20]. | ||
#Chen L, Li J, Guo T, Ghosh S, Koh SK, Tian D, Zhang L, Jia D, Beuerman RW, Aebersold R, Chan EC, Zhou L, (2015) "Global Metabonomic and Proteomic Analysis of Human Conjunctival Epithelial Cells (IOBA-NHC) in Response to Hyperosmotic Stress." <i>J Proteome Res</i> <b>14</b>(9):3982–95; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26260330 26260330]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00443 10.1021/acs.jproteome.5b00443]; GPMDB: [http://gpmdb.org/data/keyword/26260330 3]. | #Chen L, Li J, Guo T, Ghosh S, Koh SK, Tian D, Zhang L, Jia D, Beuerman RW, Aebersold R, Chan EC, Zhou L, (2015) "Global Metabonomic and Proteomic Analysis of Human Conjunctival Epithelial Cells (IOBA-NHC) in Response to Hyperosmotic Stress." <i>J Proteome Res</i> <b>14</b>(9):3982–95; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26260330 26260330]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00443 10.1021/acs.jproteome.5b00443]; GPMDB: [http://gpmdb.org/data/keyword/26260330 3]. | ||
#Dubois L, Ronquist KK, Ek B, Ronquist G, Larsson A, (2015) "Proteomic Profiling of Detergent Resistant Membranes (Lipid Rafts) of Prostasomes." <i>Mol Cell Proteomics</i> <b>14</b>(11):3015–22; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26272980 26272980]; doi: [https://dx.doi.org/10.1074/mcp.M114.047530 10.1074/mcp.M114.047530]; GPMDB: [http://gpmdb.org/data/keyword/26272980 1]. | #Dubois L, Ronquist KK, Ek B, Ronquist G, Larsson A, (2015) "Proteomic Profiling of Detergent Resistant Membranes (Lipid Rafts) of Prostasomes." <i>Mol Cell Proteomics</i> <b>14</b>(11):3015–22; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26272980 26272980]; doi: [https://dx.doi.org/10.1074/mcp.M114.047530 10.1074/mcp.M114.047530]; GPMDB: [http://gpmdb.org/data/keyword/26272980 1]. | ||
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#Xu B, Xiong F, Tian R, Zhan S, Gao Y, Qiu W, Wang R, Ge W, Ma C, (2016) "Temporal lobe in human aging: A quantitative protein profiling study of samples from Chinese Human Brain Bank." <i>Exp Gerontol</i> <b>73</b>:31–41; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26631761 26631761]; doi: [https://dx.doi.org/10.1016/j.exger.2015.11.016 10.1016/j.exger.2015.11.016]; GPMDB: [http://gpmdb.org/data/keyword/26631761 1]. | #Xu B, Xiong F, Tian R, Zhan S, Gao Y, Qiu W, Wang R, Ge W, Ma C, (2016) "Temporal lobe in human aging: A quantitative protein profiling study of samples from Chinese Human Brain Bank." <i>Exp Gerontol</i> <b>73</b>:31–41; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26631761 26631761]; doi: [https://dx.doi.org/10.1016/j.exger.2015.11.016 10.1016/j.exger.2015.11.016]; GPMDB: [http://gpmdb.org/data/keyword/26631761 1]. | ||
#Aguado BA, Wu JJ, Azarin SM, Nanavati D, Rao SS, Bushnell GG, Medicherla CB, Shea LD, (2015) "Secretome identification of immune cell factors mediating metastatic cell homing." <i>Sci Rep</i> <b>5</b>:17566; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26634905 26634905]; doi: [https://dx.doi.org/10.1038/srep17566 10.1038/srep17566]; GPMDB: [http://gpmdb.org/data/keyword/26634905 6]. | #Aguado BA, Wu JJ, Azarin SM, Nanavati D, Rao SS, Bushnell GG, Medicherla CB, Shea LD, (2015) "Secretome identification of immune cell factors mediating metastatic cell homing." <i>Sci Rep</i> <b>5</b>:17566; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26634905 26634905]; doi: [https://dx.doi.org/10.1038/srep17566 10.1038/srep17566]; GPMDB: [http://gpmdb.org/data/keyword/26634905 6]. | ||
+ | #Whisenant TC, Peralta ER, Aarreberg LD, Gao NJ, Head SR, Ordoukhanian P, Williamson JR, Salomon DR, (2015) "The Activation-Induced Assembly of an RNA/Protein Interactome Centered on the Splicing Factor U2AF2 Regulates Gene Expression in Human CD4 T Cells." <i>PLoS One</i> <b>10</b>(12):e0144409; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26641092 26641092]; doi: [https://dx.doi.org/10.1371/journal.pone.0144409 10.1371/journal.pone.0144409]; GPMDB: [http://gpmdb.org/data/keyword/26641092 19]. | ||
#Padden J, Ahrens M, Kälsch J, Bertram S, Megger DA, Bracht T, Eisenacher M, Kocabayoglu P, Meyer HE, Sipos B, Baba HA, Sitek B, (2016) "Immunohistochemical Markers Distinguishing Cholangiocellular Carcinoma (CCC) from Pancreatic Ductal Adenocarcinoma (PDAC) Discovered by Proteomic Analysis of Microdissected Cells." <i>Mol Cell Proteomics</i> <b>15</b>(3):1072–82; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26644413 26644413]; doi: [https://dx.doi.org/10.1074/mcp.M115.054585 10.1074/mcp.M115.054585]; GPMDB: [http://gpmdb.org/data/keyword/26644413 66]. | #Padden J, Ahrens M, Kälsch J, Bertram S, Megger DA, Bracht T, Eisenacher M, Kocabayoglu P, Meyer HE, Sipos B, Baba HA, Sitek B, (2016) "Immunohistochemical Markers Distinguishing Cholangiocellular Carcinoma (CCC) from Pancreatic Ductal Adenocarcinoma (PDAC) Discovered by Proteomic Analysis of Microdissected Cells." <i>Mol Cell Proteomics</i> <b>15</b>(3):1072–82; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26644413 26644413]; doi: [https://dx.doi.org/10.1074/mcp.M115.054585 10.1074/mcp.M115.054585]; GPMDB: [http://gpmdb.org/data/keyword/26644413 66]. | ||
#Xu J, Gao J, Yu C, He H, Yang Y, Figeys D, Zhou H, (2016) "Development of Online pH Gradient-Eluted Strong Cation Exchange Nanoelectrospray-Tandem Mass Spectrometry for Proteomic Analysis Facilitating Basic and Histidine-Containing Peptides Identification." <i>Anal Chem</i> <b>88</b>(1):583–91; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26646553 26646553]; doi: [https://dx.doi.org/10.1021/acs.analchem.5b04000 10.1021/acs.analchem.5b04000]; GPMDB: [http://gpmdb.org/data/keyword/26646553 6]. | #Xu J, Gao J, Yu C, He H, Yang Y, Figeys D, Zhou H, (2016) "Development of Online pH Gradient-Eluted Strong Cation Exchange Nanoelectrospray-Tandem Mass Spectrometry for Proteomic Analysis Facilitating Basic and Histidine-Containing Peptides Identification." <i>Anal Chem</i> <b>88</b>(1):583–91; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26646553 26646553]; doi: [https://dx.doi.org/10.1021/acs.analchem.5b04000 10.1021/acs.analchem.5b04000]; GPMDB: [http://gpmdb.org/data/keyword/26646553 6]. | ||
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#da Silva BF, Meng C, Helm D, Pachl F, Schiller J, Ibrahim E, Lynne CM, Brackett NL, Bertolla RP, Kuster B, (2016) "Towards Understanding Male Infertility After Spinal Cord Injury Using Quantitative Proteomics." <i>Mol Cell Proteomics</i> <b>15</b>(4):1424–34; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26814186 26814186]; doi: [https://dx.doi.org/10.1074/mcp.M115.052175 10.1074/mcp.M115.052175]; GPMDB: [http://gpmdb.org/data/keyword/26814186 504]. | #da Silva BF, Meng C, Helm D, Pachl F, Schiller J, Ibrahim E, Lynne CM, Brackett NL, Bertolla RP, Kuster B, (2016) "Towards Understanding Male Infertility After Spinal Cord Injury Using Quantitative Proteomics." <i>Mol Cell Proteomics</i> <b>15</b>(4):1424–34; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26814186 26814186]; doi: [https://dx.doi.org/10.1074/mcp.M115.052175 10.1074/mcp.M115.052175]; GPMDB: [http://gpmdb.org/data/keyword/26814186 504]. | ||
#Coman C, Solari FA, Hentschel A, Sickmann A, Zahedi RP, Ahrends R, (2016) "Simultaneous Metabolite, Protein, Lipid Extraction (SIMPLEX): A Combinatorial Multimolecular Omics Approach for Systems Biology." <i>Mol Cell Proteomics</i> <b>15</b>(4):1453–66; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26814187 26814187]; doi: [https://dx.doi.org/10.1074/mcp.M115.053702 10.1074/mcp.M115.053702]; GPMDB: [http://gpmdb.org/data/keyword/26814187 68]. | #Coman C, Solari FA, Hentschel A, Sickmann A, Zahedi RP, Ahrends R, (2016) "Simultaneous Metabolite, Protein, Lipid Extraction (SIMPLEX): A Combinatorial Multimolecular Omics Approach for Systems Biology." <i>Mol Cell Proteomics</i> <b>15</b>(4):1453–66; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26814187 26814187]; doi: [https://dx.doi.org/10.1074/mcp.M115.053702 10.1074/mcp.M115.053702]; GPMDB: [http://gpmdb.org/data/keyword/26814187 68]. | ||
- | #Bigaud E, Corrales FJ, (2016) "Methylthioadenosine | + | #Bigaud E, Corrales FJ, (2016) "Methylthioadenosine (MTA) Regulates Liver Cells Proteome and Methylproteome: Implications in Liver Biology and Disease." <i>Mol Cell Proteomics</i> <b>15</b>(5):1498–510; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26819315 26819315]; doi: [https://dx.doi.org/10.1074/mcp.M115.055772 10.1074/mcp.M115.055772]; GPMDB: [http://gpmdb.org/data/keyword/26819315 3]. |
#Kristensen TN, Kjeldal H, Schou MF, Nielsen JL, (2016) "Proteomic data reveal a physiological basis for costs and benefits associated with thermal acclimation." <i>J Exp Biol</i> <b>219</b>(Pt 7):969–76; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26823104 26823104]; doi: [https://dx.doi.org/10.1242/jeb.132696 10.1242/jeb.132696]; GPMDB: [http://gpmdb.org/data/keyword/26823104 9]. | #Kristensen TN, Kjeldal H, Schou MF, Nielsen JL, (2016) "Proteomic data reveal a physiological basis for costs and benefits associated with thermal acclimation." <i>J Exp Biol</i> <b>219</b>(Pt 7):969–76; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26823104 26823104]; doi: [https://dx.doi.org/10.1242/jeb.132696 10.1242/jeb.132696]; GPMDB: [http://gpmdb.org/data/keyword/26823104 9]. | ||
#Steger M, Tonelli F, Ito G, Davies P, Trost M, Vetter M, Wachter S, Lorentzen E, Duddy G, Wilson S, Baptista MA, Fiske BK, Fell MJ, Morrow JA, Reith AD, Alessi DR, Mann M, (2016) "Phosphoproteomics reveals that Parkinson's disease kinase LRRK2 regulates a subset of Rab GTPases." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26824392 26824392]; doi: [https://dx.doi.org/10.7554/eLife.12813 10.7554/eLife.12813]; GPMDB: [http://gpmdb.org/data/keyword/26824392 216]. | #Steger M, Tonelli F, Ito G, Davies P, Trost M, Vetter M, Wachter S, Lorentzen E, Duddy G, Wilson S, Baptista MA, Fiske BK, Fell MJ, Morrow JA, Reith AD, Alessi DR, Mann M, (2016) "Phosphoproteomics reveals that Parkinson's disease kinase LRRK2 regulates a subset of Rab GTPases." <i>Elife</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26824392 26824392]; doi: [https://dx.doi.org/10.7554/eLife.12813 10.7554/eLife.12813]; GPMDB: [http://gpmdb.org/data/keyword/26824392 216]. | ||
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#Huang H, Yoo CY, Bindbeutel R, Goldsworthy J, Tielking A, Alvarez S, Naldrett MJ, Evans BS, Chen M, Nusinow DA, (2016) "PCH1 integrates circadian and light-signaling pathways to control photoperiod-responsive growth in Arabidopsis." <i>Elife</i> <b>5</b>:e13292; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26839287 26839287]; doi: [https://dx.doi.org/10.7554/eLife.13292 10.7554/eLife.13292]; GPMDB: [http://gpmdb.org/data/keyword/26839287 9]. | #Huang H, Yoo CY, Bindbeutel R, Goldsworthy J, Tielking A, Alvarez S, Naldrett MJ, Evans BS, Chen M, Nusinow DA, (2016) "PCH1 integrates circadian and light-signaling pathways to control photoperiod-responsive growth in Arabidopsis." <i>Elife</i> <b>5</b>:e13292; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26839287 26839287]; doi: [https://dx.doi.org/10.7554/eLife.13292 10.7554/eLife.13292]; GPMDB: [http://gpmdb.org/data/keyword/26839287 9]. | ||
#Thorpe CT, Peffers MJ, Simpson D, Halliwell E, Screen HR, Clegg PD, (2016) "Anatomical heterogeneity of tendon: Fascicular and interfascicular tendon compartments have distinct proteomic composition." <i>Sci Rep</i> <b>6</b>:20455; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26842662 26842662]; doi: [https://dx.doi.org/10.1038/srep20455 10.1038/srep20455]; GPMDB: [http://gpmdb.org/data/keyword/26842662 20]. | #Thorpe CT, Peffers MJ, Simpson D, Halliwell E, Screen HR, Clegg PD, (2016) "Anatomical heterogeneity of tendon: Fascicular and interfascicular tendon compartments have distinct proteomic composition." <i>Sci Rep</i> <b>6</b>:20455; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26842662 26842662]; doi: [https://dx.doi.org/10.1038/srep20455 10.1038/srep20455]; GPMDB: [http://gpmdb.org/data/keyword/26842662 20]. | ||
- | #Chidiac R, Zhang Y, Tessier S, Faubert D, Delisle C, Gratton JP, (2016) "Comparative | + | #Chidiac R, Zhang Y, Tessier S, Faubert D, Delisle C, Gratton JP, (2016) "Comparative Phosphoproteomics Analysis of VEGF and Angiopoietin-1 Signaling Reveals ZO-1 as a Critical Regulator of Endothelial Cell Proliferation." <i>Mol Cell Proteomics</i> <b>15</b>(5):1511–25; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26846344 26846344]; doi: [https://dx.doi.org/10.1074/mcp.M115.053298 10.1074/mcp.M115.053298]; GPMDB: [http://gpmdb.org/data/keyword/26846344 13]. |
- | #Meierhofer D, Halbach M, | + | #Meierhofer D, Halbach M, Şen NE, Gispert S, Auburger G, (2016) "Ataxin-2 (Atxn2)-Knock-Out Mice Show Branched Chain Amino Acids and Fatty Acids Pathway Alterations." <i>Mol Cell Proteomics</i> <b>15</b>(5):1728–39; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26850065 26850065]; doi: [https://dx.doi.org/10.1074/mcp.M115.056770 10.1074/mcp.M115.056770]; GPMDB: [http://gpmdb.org/data/keyword/26850065 48]. |
- | # | + | #Aretz I, Hardt C, Wittig I, Meierhofer D, (2016) "An Impaired Respiratory Electron Chain Triggers Down-regulation of the Energy Metabolism and De-ubiquitination of Solute Carrier Amino Acid Transporters." <i>Mol Cell Proteomics</i> <b>15</b>(5):1526–38; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26852163 26852163]; doi: [https://dx.doi.org/10.1074/mcp.M115.053181 10.1074/mcp.M115.053181]; GPMDB: [http://gpmdb.org/data/keyword/26852163 60]. |
#Peffers MJ, Collins J, Fang Y, Goljanek-Whysall K, Rushton M, Loughlin J, Proctor C, Clegg PD, (2016) "Age-related changes in mesenchymal stem cells identified using a multi-omics approach." <i>Eur Cell Mater</i> <b>31</b>:136–59; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26853623 26853623]; GPMDB: [http://gpmdb.org/data/keyword/26853623 8]. | #Peffers MJ, Collins J, Fang Y, Goljanek-Whysall K, Rushton M, Loughlin J, Proctor C, Clegg PD, (2016) "Age-related changes in mesenchymal stem cells identified using a multi-omics approach." <i>Eur Cell Mater</i> <b>31</b>:136–59; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26853623 26853623]; GPMDB: [http://gpmdb.org/data/keyword/26853623 8]. | ||
#Billing AM, Ben Hamidane H, Dib SS, Cotton RJ, Bhagwat AM, Kumar P, Hayat S, Yousri NA, Goswami N, Suhre K, Rafii A, Graumann J, (2016) "Comprehensive transcriptomic and proteomic characterization of human mesenchymal stem cells reveals source specific cellular markers." <i>Sci Rep</i> <b>6</b>:21507; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26857143 26857143]; doi: [https://dx.doi.org/10.1038/srep21507 10.1038/srep21507]; GPMDB: [http://gpmdb.org/data/keyword/26857143 9]. | #Billing AM, Ben Hamidane H, Dib SS, Cotton RJ, Bhagwat AM, Kumar P, Hayat S, Yousri NA, Goswami N, Suhre K, Rafii A, Graumann J, (2016) "Comprehensive transcriptomic and proteomic characterization of human mesenchymal stem cells reveals source specific cellular markers." <i>Sci Rep</i> <b>6</b>:21507; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26857143 26857143]; doi: [https://dx.doi.org/10.1038/srep21507 10.1038/srep21507]; GPMDB: [http://gpmdb.org/data/keyword/26857143 9]. | ||
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#Creedon H, Gómez-Cuadrado L, Tarnauskaitė Ž, Balla J, Canel M, MacLeod KG, Serrels B, Fraser C, Unciti-Broceta A, Tracey N, Le Bihan T, Klinowska T, Sims AH, Byron A, Brunton VG, (2016) "Identification of novel pathways linking epithelial-to-mesenchymal transition with resistance to HER2-targeted therapy." <i>Oncotarget</i> <b>7</b>(10):11539–52; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26883193 26883193]; doi: [https://dx.doi.org/10.18632/oncotarget.7317 10.18632/oncotarget.7317]; GPMDB: [http://gpmdb.org/data/keyword/26883193 6]. | #Creedon H, Gómez-Cuadrado L, Tarnauskaitė Ž, Balla J, Canel M, MacLeod KG, Serrels B, Fraser C, Unciti-Broceta A, Tracey N, Le Bihan T, Klinowska T, Sims AH, Byron A, Brunton VG, (2016) "Identification of novel pathways linking epithelial-to-mesenchymal transition with resistance to HER2-targeted therapy." <i>Oncotarget</i> <b>7</b>(10):11539–52; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26883193 26883193]; doi: [https://dx.doi.org/10.18632/oncotarget.7317 10.18632/oncotarget.7317]; GPMDB: [http://gpmdb.org/data/keyword/26883193 6]. | ||
#Zufferey A, Ibberson M, Reny JL, Nolli S, Schvartz D, Docquier M, Xenarios I, Sanchez JC, Fontana P, (2016) "New molecular insights into modulation of platelet reactivity in aspirin-treated patients using a network-based approach." <i>Hum Genet</i> <b>135</b>(4):403–14; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26883867 26883867]; doi: [https://dx.doi.org/10.1007/s00439-016-1642-1 10.1007/s00439-016-1642-1]; GPMDB: [http://gpmdb.org/data/keyword/26883867 13]. | #Zufferey A, Ibberson M, Reny JL, Nolli S, Schvartz D, Docquier M, Xenarios I, Sanchez JC, Fontana P, (2016) "New molecular insights into modulation of platelet reactivity in aspirin-treated patients using a network-based approach." <i>Hum Genet</i> <b>135</b>(4):403–14; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26883867 26883867]; doi: [https://dx.doi.org/10.1007/s00439-016-1642-1 10.1007/s00439-016-1642-1]; GPMDB: [http://gpmdb.org/data/keyword/26883867 13]. | ||
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- | #Ramallo Guevara C, Philipp O, Hamann A, Werner A, Osiewacz | + | #Ramallo Guevara C, Philipp O, Hamann A, Werner A, Osiewacz HD, Rexroth S, Rögner M, Poetsch A, (2016) "Global Protein Oxidation Profiling Suggests Efficient Mitochondrial Proteome Homeostasis During Aging." <i>Mol Cell Proteomics</i> <b>15</b>(5):1692–709; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26884511 26884511]; doi: [https://dx.doi.org/10.1074/mcp.M115.055616 10.1074/mcp.M115.055616]; GPMDB: [http://gpmdb.org/data/keyword/26884511 17]. |
- | #Lee HL, Chiang IC, Liang SY, Lee DY, Chang GD, Wang KY, Lin SY, Shih YL, (2016) "Quantitative | + | #Lee HL, Chiang IC, Liang SY, Lee DY, Chang GD, Wang KY, Lin SY, Shih YL, (2016) "Quantitative Proteomics Analysis Reveals the Min System of Escherichia coli Modulates Reversible Protein Association with the Inner Membrane." <i>Mol Cell Proteomics</i> <b>15</b>(5):1572–83; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26889046 26889046]; doi: [https://dx.doi.org/10.1074/mcp.M115.053603 10.1074/mcp.M115.053603]; GPMDB: [http://gpmdb.org/data/keyword/26889046 4]. |
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- | #Zilkenat S, Franz-Wachtel M, Stierhof YD, | + | #Sieber J, Hauer C, Bhuvanagiri M, Leicht S, Krijgsveld J, Neu-Yilik G, Hentze MW, Kulozik AE, (2016) "Proteomic Analysis Reveals Branch-specific Regulation of the Unfolded Protein Response by Nonsense-mediated mRNA Decay." <i>Mol Cell Proteomics</i> <b>15</b>(5):1584–97; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26896796 26896796]; doi: [https://dx.doi.org/10.1074/mcp.M115.054056 10.1074/mcp.M115.054056]; GPMDB: [http://gpmdb.org/data/keyword/26896796 4]. |
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#Zhao L, Chen Y, Bajaj AO, Eblimit A, Xu M, Soens ZT, Wang F, Ge Z, Jung SY, He F, Li Y, Wensel TG, Qin J, Chen R, (2016) "Integrative subcellular proteomic analysis allows accurate prediction of human disease-causing genes." <i>Genome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26912414 26912414]; doi: [https://dx.doi.org/10.1101/gr.198911.115 10.1101/gr.198911.115]; GPMDB: [http://gpmdb.org/data/keyword/26912414 26]. | #Zhao L, Chen Y, Bajaj AO, Eblimit A, Xu M, Soens ZT, Wang F, Ge Z, Jung SY, He F, Li Y, Wensel TG, Qin J, Chen R, (2016) "Integrative subcellular proteomic analysis allows accurate prediction of human disease-causing genes." <i>Genome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26912414 26912414]; doi: [https://dx.doi.org/10.1101/gr.198911.115 10.1101/gr.198911.115]; GPMDB: [http://gpmdb.org/data/keyword/26912414 26]. | ||
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- | #Chen JX, Cipriani PG, Mecenas D, Polanowska J, Piano F, Gunsalus KC, Selbach M, (2016) "In | + | #Chen JX, Cipriani PG, Mecenas D, Polanowska J, Piano F, Gunsalus KC, Selbach M, (2016) "In Vivo Interaction Proteomics in Caenorhabditis elegans Embryos Provides New Insights into P Granule Dynamics." <i>Mol Cell Proteomics</i> <b>15</b>(5):1642–57; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26912668 26912668]; doi: [https://dx.doi.org/10.1074/mcp.M115.053975 10.1074/mcp.M115.053975]; GPMDB: [http://gpmdb.org/data/keyword/26912668 66]. |
#Mostafa I, Zhu N, Yoo MJ, Balmant KM, Misra BB, Dufresne C, Abou-Hashem M, Chen S, El-Domiaty M, (2016) "New nodes and edges in the glucosinolate molecular network revealed by proteomics and metabolomics of Arabidopsis myb28/29 and cyp79B2/B3 glucosinolate mutants." <i>J Proteomics</i> <b>138</b>:1–19; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26915584 26915584]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.02.012 10.1016/j.jprot.2016.02.012]; GPMDB: [http://gpmdb.org/data/keyword/26915584 24]. | #Mostafa I, Zhu N, Yoo MJ, Balmant KM, Misra BB, Dufresne C, Abou-Hashem M, Chen S, El-Domiaty M, (2016) "New nodes and edges in the glucosinolate molecular network revealed by proteomics and metabolomics of Arabidopsis myb28/29 and cyp79B2/B3 glucosinolate mutants." <i>J Proteomics</i> <b>138</b>:1–19; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26915584 26915584]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.02.012 10.1016/j.jprot.2016.02.012]; GPMDB: [http://gpmdb.org/data/keyword/26915584 24]. | ||
#Xu B, Gao Y, Zhan S, Xiong F, Qiu W, Qian X, Wang T, Wang N, Zhang D, Yang Q, Wang R, Bao X, Dou W, Tian R, Meng S, Gai WP, Huang Y, Yan XX, Ge W, Ma C, (2016) "Quantitative protein profiling of hippocampus during human aging." <i>Neurobiol Aging</i> <b>39</b>:46–56; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26923401 26923401]; doi: [https://dx.doi.org/10.1016/j.neurobiolaging.2015.11.029 10.1016/j.neurobiolaging.2015.11.029]; GPMDB: [http://gpmdb.org/data/keyword/26923401 20]. | #Xu B, Gao Y, Zhan S, Xiong F, Qiu W, Qian X, Wang T, Wang N, Zhang D, Yang Q, Wang R, Bao X, Dou W, Tian R, Meng S, Gai WP, Huang Y, Yan XX, Ge W, Ma C, (2016) "Quantitative protein profiling of hippocampus during human aging." <i>Neurobiol Aging</i> <b>39</b>:46–56; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26923401 26923401]; doi: [https://dx.doi.org/10.1016/j.neurobiolaging.2015.11.029 10.1016/j.neurobiolaging.2015.11.029]; GPMDB: [http://gpmdb.org/data/keyword/26923401 20]. | ||
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#Ly A, Merl-Pham J, Priller M, Gruhn F, Senninger N, Ueffing M, Hauck SM, (2016) "Proteomic Profiling Suggests Central Role Of STAT Signaling during Retinal Degeneration in the rd10 Mouse Model." <i>J Proteome Res</i> <b>15</b>(4):1350–9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26939627 26939627]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00111 10.1021/acs.jproteome.6b00111]; GPMDB: [http://gpmdb.org/data/keyword/26939627 24]. | #Ly A, Merl-Pham J, Priller M, Gruhn F, Senninger N, Ueffing M, Hauck SM, (2016) "Proteomic Profiling Suggests Central Role Of STAT Signaling during Retinal Degeneration in the rd10 Mouse Model." <i>J Proteome Res</i> <b>15</b>(4):1350–9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26939627 26939627]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00111 10.1021/acs.jproteome.6b00111]; GPMDB: [http://gpmdb.org/data/keyword/26939627 24]. | ||
#Salih M, Demmers JA, Bezstarosti K, Leonhard WN, Losekoot M, van Kooten C, Gansevoort RT, Peters DJ, Zietse R, Hoorn EJ, DIPAK Consortium, (2016) "Proteomics of Urinary Vesicles Links Plakins and Complement to Polycystic Kidney Disease." <i>J Am Soc Nephrol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26940098 26940098]; doi: [https://dx.doi.org/10.1681/ASN.2015090994 10.1681/ASN.2015090994]; GPMDB: [http://gpmdb.org/data/keyword/26940098 7]. | #Salih M, Demmers JA, Bezstarosti K, Leonhard WN, Losekoot M, van Kooten C, Gansevoort RT, Peters DJ, Zietse R, Hoorn EJ, DIPAK Consortium, (2016) "Proteomics of Urinary Vesicles Links Plakins and Complement to Polycystic Kidney Disease." <i>J Am Soc Nephrol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26940098 26940098]; doi: [https://dx.doi.org/10.1681/ASN.2015090994 10.1681/ASN.2015090994]; GPMDB: [http://gpmdb.org/data/keyword/26940098 7]. | ||
- | #Kamkina P, Snoek LB, Grossmann J, Volkers RJ, Sterken MG, Daube M, Roschitzki B, Fortes C, Schlapbach R, Roth A, von Mering C, Hengartner MO, Schrimpf SP, Kammenga JE, (2016) "Natural | + | #Kamkina P, Snoek LB, Grossmann J, Volkers RJ, Sterken MG, Daube M, Roschitzki B, Fortes C, Schlapbach R, Roth A, von Mering C, Hengartner MO, Schrimpf SP, Kammenga JE, (2016) "Natural Genetic Variation Differentially Affects the Proteome and Transcriptome in Caenorhabditis elegans." <i>Mol Cell Proteomics</i> <b>15</b>(5):1670–80; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26944343 26944343]; doi: [https://dx.doi.org/10.1074/mcp.M115.052548 10.1074/mcp.M115.052548]; GPMDB: [http://gpmdb.org/data/keyword/26944343 12]. |
- | #Xin L, Xu B, Ma L, Hou Q, Ye M, Meng S, Ding X, Ge W, (2016) "Proteomics study reveals that the dysregulation of focal adhesion and ribosome contribute to early pregnancy loss." <i>Proteomics Clin Appl</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26947931 26947931]; doi: [https://dx.doi.org/10.1002/prca.201500136 10.1002/prca.201500136]; GPMDB: [http://gpmdb.org/data/keyword/26947931 1]. | + | #Xin L, Xu B, Ma L, Hou Q, Ye M, Meng S, Ding X, Ge W, (2016) "Proteomics study reveals that the dysregulation of focal adhesion and ribosome contribute to early pregnancy loss." <i>Proteomics Clin Appl</i> <b>10</b>(5):554–63; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26947931 26947931]; doi: [https://dx.doi.org/10.1002/prca.201500136 10.1002/prca.201500136]; GPMDB: [http://gpmdb.org/data/keyword/26947931 1]. |
- | #Adewole OO, Erhabor GE, Adewole TO, Ojo AO, | + | #Adewole OO, Erhabor GE, Adewole TO, Ojo AO, Oshokoya H, Wolfe LM, Prenni JE, (2016) "Proteomic profiling of eccrine sweat reveals its potential as a diagnostic biofluid for active tuberculosis." <i>Proteomics Clin Appl</i> <b>10</b>(5):547–53; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26948146 26948146]; doi: [https://dx.doi.org/10.1002/prca.201500071 10.1002/prca.201500071]; GPMDB: [http://gpmdb.org/data/keyword/26948146 10]. |
#Lai ZW, Bolm L, Fuellgraf H, Biniossek ML, Makowiec F, Hopt UT, Werner M, Keck T, Bausch D, Sorio C, Scarpa A, Schilling O, Bronsert P, Wellner UF, (2016) "Characterization of various cell lines from different ampullary cancer subtypes and cancer associated fibroblast-mediated responses." <i>BMC Cancer</i> <b>16</b>(1):195; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26951071 26951071]; doi: [https://dx.doi.org/10.1186/s12885-016-2193-5 10.1186/s12885-016-2193-5]; GPMDB: [http://gpmdb.org/data/keyword/26951071 5]. | #Lai ZW, Bolm L, Fuellgraf H, Biniossek ML, Makowiec F, Hopt UT, Werner M, Keck T, Bausch D, Sorio C, Scarpa A, Schilling O, Bronsert P, Wellner UF, (2016) "Characterization of various cell lines from different ampullary cancer subtypes and cancer associated fibroblast-mediated responses." <i>BMC Cancer</i> <b>16</b>(1):195; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26951071 26951071]; doi: [https://dx.doi.org/10.1186/s12885-016-2193-5 10.1186/s12885-016-2193-5]; GPMDB: [http://gpmdb.org/data/keyword/26951071 5]. | ||
#De Marchi T, Kuhn E, Dekker LJ, Stingl C, Braakman RB, Opdam M, Linn SC, Sweep FC, Span PN, Luider TM, Foekens JA, Martens JW, Carr SA, Umar A, (2016) "Targeted MS Assay Predicting Tamoxifen Resistance in Estrogen-Receptor-Positive Breast Cancer Tissues and Sera." <i>J Proteome Res</i> <b>15</b>(4):1230–42; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26958999 26958999]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b01119 10.1021/acs.jproteome.5b01119]; GPMDB: [http://gpmdb.org/data/keyword/26958999 78]. | #De Marchi T, Kuhn E, Dekker LJ, Stingl C, Braakman RB, Opdam M, Linn SC, Sweep FC, Span PN, Luider TM, Foekens JA, Martens JW, Carr SA, Umar A, (2016) "Targeted MS Assay Predicting Tamoxifen Resistance in Estrogen-Receptor-Positive Breast Cancer Tissues and Sera." <i>J Proteome Res</i> <b>15</b>(4):1230–42; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26958999 26958999]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b01119 10.1021/acs.jproteome.5b01119]; GPMDB: [http://gpmdb.org/data/keyword/26958999 78]. | ||
- | #Jo DH, Bae J, Chae S, Kim JH, Han JH, Hwang D, Lee SW, Kim JH, (2016) "Quantitative | + | #Jo DH, Bae J, Chae S, Kim JH, Han JH, Hwang D, Lee SW, Kim JH, (2016) "Quantitative Proteomics Reveals β2 Integrin-mediated Cytoskeletal Rearrangement in Vascular Endothelial Growth Factor (VEGF)-induced Retinal Vascular Hyperpermeability." <i>Mol Cell Proteomics</i> <b>15</b>(5):1681–91; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26969716 26969716]; doi: [https://dx.doi.org/10.1074/mcp.M115.053249 10.1074/mcp.M115.053249]; GPMDB: [http://gpmdb.org/data/keyword/26969716 72]. |
#Gallart-Palau X, Lee BS, Adav SS, Qian J, Serra A, Park JE, Lai MK, Chen CP, Kalaria RN, Sze SK, (2016) "Gender differences in white matter pathology and mitochondrial dysfunction in Alzheimer's disease with cerebrovascular disease." <i>Mol Brain</i> <b>9</b>:27; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26983404 26983404]; doi: [https://dx.doi.org/10.1186/s13041-016-0205-7 10.1186/s13041-016-0205-7]; GPMDB: [http://gpmdb.org/data/keyword/26983404 10]. | #Gallart-Palau X, Lee BS, Adav SS, Qian J, Serra A, Park JE, Lai MK, Chen CP, Kalaria RN, Sze SK, (2016) "Gender differences in white matter pathology and mitochondrial dysfunction in Alzheimer's disease with cerebrovascular disease." <i>Mol Brain</i> <b>9</b>:27; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26983404 26983404]; doi: [https://dx.doi.org/10.1186/s13041-016-0205-7 10.1186/s13041-016-0205-7]; GPMDB: [http://gpmdb.org/data/keyword/26983404 10]. | ||
- | #Bonn F, Pané-Farré J, Schlüter R, Schaffer M, Fuchs S, Bernhardt J, Riedel K, Otto A, Völker U, van Dijl JM, Hecker M, Mäder U, Becher D, (2016) "Global analysis of the impact of linezolid onto virulence factor production in S. aureus USA300." <i>Int J Med Microbiol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26996810 26996810]; doi: [https://dx.doi.org/10.1016/j.ijmm.2016.02.004 10.1016/j.ijmm.2016.02.004]; GPMDB: [http://gpmdb.org/data/keyword/26996810 300]. | + | #Bonn F, Pané-Farré J, Schlüter R, Schaffer M, Fuchs S, Bernhardt J, Riedel K, Otto A, Völker U, van Dijl JM, Hecker M, Mäder U, Becher D, (2016) "Global analysis of the impact of linezolid onto virulence factor production in S. aureus USA300." <i>Int J Med Microbiol</i> <b>306</b>(3):131–40; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/26996810 26996810]; doi: [https://dx.doi.org/10.1016/j.ijmm.2016.02.004 10.1016/j.ijmm.2016.02.004]; GPMDB: [http://gpmdb.org/data/keyword/26996810 300]. |
#He JJ, Ma J, Elsheikha HM, Song HQ, Zhou DH, Zhu XQ, (2016) "Proteomic Profiling of Mouse Liver following Acute Toxoplasma gondii Infection." <i>PLoS One</i> <b>11</b>(3):e0152022; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27003162 27003162]; doi: [https://dx.doi.org/10.1371/journal.pone.0152022 10.1371/journal.pone.0152022]; GPMDB: [http://gpmdb.org/data/keyword/27003162 1]. | #He JJ, Ma J, Elsheikha HM, Song HQ, Zhou DH, Zhu XQ, (2016) "Proteomic Profiling of Mouse Liver following Acute Toxoplasma gondii Infection." <i>PLoS One</i> <b>11</b>(3):e0152022; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27003162 27003162]; doi: [https://dx.doi.org/10.1371/journal.pone.0152022 10.1371/journal.pone.0152022]; GPMDB: [http://gpmdb.org/data/keyword/27003162 1]. | ||
#Liñeiro E, Chiva C, Cantoral JM, Sabido E, Fernández-Acero FJ, (2016) "Phosphoproteome analysis of B. cinerea in response to different plant-based elicitors." <i>J Proteomics</i> <b>139</b>:84–94; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27003611 27003611]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.03.019 10.1016/j.jprot.2016.03.019]; GPMDB: [http://gpmdb.org/data/keyword/27003611 8]. | #Liñeiro E, Chiva C, Cantoral JM, Sabido E, Fernández-Acero FJ, (2016) "Phosphoproteome analysis of B. cinerea in response to different plant-based elicitors." <i>J Proteomics</i> <b>139</b>:84–94; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27003611 27003611]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.03.019 10.1016/j.jprot.2016.03.019]; GPMDB: [http://gpmdb.org/data/keyword/27003611 8]. | ||
- | #Wilkerson EM, Johansson MW, Hebert AS, Westphall MS, Mathur SK, Jarjour NN, Schwantes EA, Mosher DF, Coon JJ, (2016) "The Peripheral Blood Eosinophil Proteome." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27005946 27005946]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00006 10.1021/acs.jproteome.6b00006]; GPMDB: [http://gpmdb.org/data/keyword/27005946 45]. | + | #Wilkerson EM, Johansson MW, Hebert AS, Westphall MS, Mathur SK, Jarjour NN, Schwantes EA, Mosher DF, Coon JJ, (2016) "The Peripheral Blood Eosinophil Proteome." <i>J Proteome Res</i> <b>15</b>(5):1524–33; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27005946 27005946]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00006 10.1021/acs.jproteome.6b00006]; GPMDB: [http://gpmdb.org/data/keyword/27005946 45]. |
#Wilson MC, Trakarnsanga K, Heesom KJ, Cogan N, Green C, Toye AM, Parsons SF, Ansteee DJ, Frayne J, (2016) "Comparison of the proteome of adult and cord erythroid cells, and changes in the proteome following reticulocyte maturation." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27006477 27006477]; doi: [https://dx.doi.org/10.1074/mcp.M115.057315 10.1074/mcp.M115.057315]; GPMDB: [http://gpmdb.org/data/keyword/27006477 2]. | #Wilson MC, Trakarnsanga K, Heesom KJ, Cogan N, Green C, Toye AM, Parsons SF, Ansteee DJ, Frayne J, (2016) "Comparison of the proteome of adult and cord erythroid cells, and changes in the proteome following reticulocyte maturation." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27006477 27006477]; doi: [https://dx.doi.org/10.1074/mcp.M115.057315 10.1074/mcp.M115.057315]; GPMDB: [http://gpmdb.org/data/keyword/27006477 2]. | ||
#Sunitha B, Gayathri N, Kumar M, Keshava Prasad TS, Nalini A, Padmanabhan B, Srinivas Bharath MM, (2016) "Muscle biopsies from human muscle diseases with myopathic pathology reveal common alterations in mitochondrial function." <i>J Neurochem</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27015874 27015874]; doi: [https://dx.doi.org/10.1111/jnc.13626 10.1111/jnc.13626]; GPMDB: [http://gpmdb.org/data/keyword/27015874 1]. | #Sunitha B, Gayathri N, Kumar M, Keshava Prasad TS, Nalini A, Padmanabhan B, Srinivas Bharath MM, (2016) "Muscle biopsies from human muscle diseases with myopathic pathology reveal common alterations in mitochondrial function." <i>J Neurochem</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27015874 27015874]; doi: [https://dx.doi.org/10.1111/jnc.13626 10.1111/jnc.13626]; GPMDB: [http://gpmdb.org/data/keyword/27015874 1]. | ||
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#Slany A, Bileck A, Kreutz D, Mayer RL, Muqaku B, Gerner C, (2016) "Contribution of human fibroblasts and endothelial cells to the Hallmarks of Inflammation as determined by proteome profiling." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27025457 27025457]; doi: [https://dx.doi.org/10.1074/mcp.M116.058099 10.1074/mcp.M116.058099]; GPMDB: [http://gpmdb.org/data/keyword/27025457 104]. | #Slany A, Bileck A, Kreutz D, Mayer RL, Muqaku B, Gerner C, (2016) "Contribution of human fibroblasts and endothelial cells to the Hallmarks of Inflammation as determined by proteome profiling." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27025457 27025457]; doi: [https://dx.doi.org/10.1074/mcp.M116.058099 10.1074/mcp.M116.058099]; GPMDB: [http://gpmdb.org/data/keyword/27025457 104]. | ||
#Osinalde N, Sánchez-Quiles V, Blagoev B, Kratchmarova I, (2016) "Changes in Gab2 phosphorylation and interaction partners in response to interleukin (IL)-2 stimulation in T-lymphocytes." <i>Sci Rep</i> <b>6</b>:23530; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27025927 27025927]; doi: [https://dx.doi.org/10.1038/srep23530 10.1038/srep23530]; GPMDB: [http://gpmdb.org/data/keyword/27025927 22]. | #Osinalde N, Sánchez-Quiles V, Blagoev B, Kratchmarova I, (2016) "Changes in Gab2 phosphorylation and interaction partners in response to interleukin (IL)-2 stimulation in T-lymphocytes." <i>Sci Rep</i> <b>6</b>:23530; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27025927 27025927]; doi: [https://dx.doi.org/10.1038/srep23530 10.1038/srep23530]; GPMDB: [http://gpmdb.org/data/keyword/27025927 22]. | ||
- | #Xu G, Pattamatta A, Hildago R, Pace MC, Brown H, Borchelt DR, (2016) "Vulnerability of newly synthesized proteins to proteostasis stress." <i>J Cell Sci</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27026526 27026526]; doi: [https://dx.doi.org/10.1242/jcs.176479 10.1242/jcs.176479]; GPMDB: [http://gpmdb.org/data/keyword/27026526 55]. | + | #Xu G, Pattamatta A, Hildago R, Pace MC, Brown H, Borchelt DR, (2016) "Vulnerability of newly synthesized proteins to proteostasis stress." <i>J Cell Sci</i> <b>129</b>(9):1892–901; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27026526 27026526]; doi: [https://dx.doi.org/10.1242/jcs.176479 10.1242/jcs.176479]; GPMDB: [http://gpmdb.org/data/keyword/27026526 55]. |
#Goldman-Pinkovich A, Balno C, Strasser R, Zeituni-Molad M, Bendelak K, Rentsch D, Ephros M, Wiese M, Jardim A, Myler PJ, Zilberstein D, (2016) "An Arginine Deprivation Response Pathway Is Induced in Leishmania during Macrophage Invasion." <i>PLoS Pathog</i> <b>12</b>(4):e1005494; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27043018 27043018]; doi: [https://dx.doi.org/10.1371/journal.ppat.1005494 10.1371/journal.ppat.1005494]; GPMDB: [http://gpmdb.org/data/keyword/27043018 8]. | #Goldman-Pinkovich A, Balno C, Strasser R, Zeituni-Molad M, Bendelak K, Rentsch D, Ephros M, Wiese M, Jardim A, Myler PJ, Zilberstein D, (2016) "An Arginine Deprivation Response Pathway Is Induced in Leishmania during Macrophage Invasion." <i>PLoS Pathog</i> <b>12</b>(4):e1005494; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27043018 27043018]; doi: [https://dx.doi.org/10.1371/journal.ppat.1005494 10.1371/journal.ppat.1005494]; GPMDB: [http://gpmdb.org/data/keyword/27043018 8]. | ||
- | #Salvetti A, Couté Y, Epstein A, Arata L, Kraut A, Navratil V, Bouvet P, Greco A, (2016) "Nuclear Functions of Nucleolin through Global Proteomics and Interactomic Approaches." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27049334 27049334]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00126 10.1021/acs.jproteome.6b00126]; GPMDB: [http://gpmdb.org/data/keyword/27049334 7]. | + | #Salvetti A, Couté Y, Epstein A, Arata L, Kraut A, Navratil V, Bouvet P, Greco A, (2016) "Nuclear Functions of Nucleolin through Global Proteomics and Interactomic Approaches." <i>J Proteome Res</i> <b>15</b>(5):1659–69; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27049334 27049334]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00126 10.1021/acs.jproteome.6b00126]; GPMDB: [http://gpmdb.org/data/keyword/27049334 7]. |
- | #Zhou S, Okekeogbu I, Sangireddy S, Ye Z, Li H, Bhatti S, Hui D, McDonald DW, Yang Y, Giri S, Howe KJ, Fish T, Thannhauser TW, (2016) "Proteome Modification in Tomato Plants upon Long-Term Aluminum Treatment." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27052409 27052409]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00128 10.1021/acs.jproteome.6b00128]; GPMDB: [http://gpmdb.org/data/keyword/27052409 68]. | + | #Zhou S, Okekeogbu I, Sangireddy S, Ye Z, Li H, Bhatti S, Hui D, McDonald DW, Yang Y, Giri S, Howe KJ, Fish T, Thannhauser TW, (2016) "Proteome Modification in Tomato Plants upon Long-Term Aluminum Treatment." <i>J Proteome Res</i> <b>15</b>(5):1670–84; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27052409 27052409]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00128 10.1021/acs.jproteome.6b00128]; GPMDB: [http://gpmdb.org/data/keyword/27052409 68]. |
#Slomnicki L, Malinowska A, Kistowski M, Palusinski A, Zheng JJ, Sepp M, Timmusk T, Dadlez M, Hetman M, (2016) "Nucleolar enrichment of brain proteins with critical roles in human neurodevelopment." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27053602 27053602]; doi: [https://dx.doi.org/10.1074/mcp.M115.051920 10.1074/mcp.M115.051920]; GPMDB: [http://gpmdb.org/data/keyword/27053602 18]. | #Slomnicki L, Malinowska A, Kistowski M, Palusinski A, Zheng JJ, Sepp M, Timmusk T, Dadlez M, Hetman M, (2016) "Nucleolar enrichment of brain proteins with critical roles in human neurodevelopment." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27053602 27053602]; doi: [https://dx.doi.org/10.1074/mcp.M115.051920 10.1074/mcp.M115.051920]; GPMDB: [http://gpmdb.org/data/keyword/27053602 18]. | ||
#Liberton M, Saha R, Jacobs JM, Nguyen AY, Gritsenko MA, Smith RD, Koppenaal DW, Pakrasi HB, (2016) "Global Proteomic Analysis Reveals an Exclusive Role of Thylakoid Membranes in Bioenergetics of a Model Cyanobacterium." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27056914 27056914]; doi: [https://dx.doi.org/10.1074/mcp.M115.057240 10.1074/mcp.M115.057240]; GPMDB: [http://gpmdb.org/data/keyword/27056914 2]. | #Liberton M, Saha R, Jacobs JM, Nguyen AY, Gritsenko MA, Smith RD, Koppenaal DW, Pakrasi HB, (2016) "Global Proteomic Analysis Reveals an Exclusive Role of Thylakoid Membranes in Bioenergetics of a Model Cyanobacterium." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27056914 27056914]; doi: [https://dx.doi.org/10.1074/mcp.M115.057240 10.1074/mcp.M115.057240]; GPMDB: [http://gpmdb.org/data/keyword/27056914 2]. | ||
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#Lochmatter C, Fischer R, Charles PD, Yu Z, Powrie F, Kessler BM, (2016) "Integrative Phosphoproteomics Links IL-23R Signaling with Metabolic Adaptation in Lymphocytes." <i>Sci Rep</i> <b>6</b>:24491; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27080861 27080861]; doi: [https://dx.doi.org/10.1038/srep24491 10.1038/srep24491]; GPMDB: [http://gpmdb.org/data/keyword/27080861 7]. | #Lochmatter C, Fischer R, Charles PD, Yu Z, Powrie F, Kessler BM, (2016) "Integrative Phosphoproteomics Links IL-23R Signaling with Metabolic Adaptation in Lymphocytes." <i>Sci Rep</i> <b>6</b>:24491; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27080861 27080861]; doi: [https://dx.doi.org/10.1038/srep24491 10.1038/srep24491]; GPMDB: [http://gpmdb.org/data/keyword/27080861 7]. | ||
#Arts IS, Vertommen D, Baldin F, Laloux G, Collet JF, (2016) "Comprehensively characterizing the thioredoxin interactome in vivo highlights the central role played by this ubiquitous oxidoreductase in redox control." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27081212 27081212]; doi: [https://dx.doi.org/10.1074/mcp.M115.056440 10.1074/mcp.M115.056440]; GPMDB: [http://gpmdb.org/data/keyword/27081212 103]. | #Arts IS, Vertommen D, Baldin F, Laloux G, Collet JF, (2016) "Comprehensively characterizing the thioredoxin interactome in vivo highlights the central role played by this ubiquitous oxidoreductase in redox control." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27081212 27081212]; doi: [https://dx.doi.org/10.1074/mcp.M115.056440 10.1074/mcp.M115.056440]; GPMDB: [http://gpmdb.org/data/keyword/27081212 103]. | ||
- | #Tape CJ, Ling S, Dimitriadi M, McMahon KM, Worboys JD, Leong HS, Norrie IC, Miller CJ, Poulogiannis G, Lauffenburger DA, Jørgensen C, (2016) "Oncogenic KRAS Regulates Tumor Cell Signaling via Stromal Reciprocation." <i>Cell</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27087446 27087446]; doi: [https://dx.doi.org/10.1016/j.cell.2016.03.029 10.1016/j.cell.2016.03.029]; GPMDB: [http://gpmdb.org/data/keyword/27087446 374]. | + | #Tape CJ, Ling S, Dimitriadi M, McMahon KM, Worboys JD, Leong HS, Norrie IC, Miller CJ, Poulogiannis G, Lauffenburger DA, Jørgensen C, (2016) "Oncogenic KRAS Regulates Tumor Cell Signaling via Stromal Reciprocation." <i>Cell</i> <b>165</b>(4):910–920; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27087446 27087446]; doi: [https://dx.doi.org/10.1016/j.cell.2016.03.029 10.1016/j.cell.2016.03.029]; GPMDB: [http://gpmdb.org/data/keyword/27087446 374]. |
#Aasebø E, Mjaavatten O, Vaudel M, Farag Y, Selheim F, Berven F, Bruserud Ø, Hernandez-Valladares M, (2016) "Freezing effects on the acute myeloid leukemia cell proteome and phosphoproteome revealed using optimal quantitative workflows." <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27107777 27107777]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.03.049 10.1016/j.jprot.2016.03.049]; GPMDB: [http://gpmdb.org/data/keyword/27107777 163]. | #Aasebø E, Mjaavatten O, Vaudel M, Farag Y, Selheim F, Berven F, Bruserud Ø, Hernandez-Valladares M, (2016) "Freezing effects on the acute myeloid leukemia cell proteome and phosphoproteome revealed using optimal quantitative workflows." <i>J Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27107777 27107777]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.03.049 10.1016/j.jprot.2016.03.049]; GPMDB: [http://gpmdb.org/data/keyword/27107777 163]. | ||
- | #Larance M, Kirkwood KJ, Tinti M, Murillo AB, Ferguson MA, Lamond AI, (2016) "Global Membrane Protein Interactome Analysis using In vivo Crosslinking and MS-based Protein Correlation Profiling." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27114452 27114452]; doi: [https://dx.doi.org/10.1074/mcp.O115.055467 10.1074/mcp.O115.055467]; GPMDB: [http://gpmdb.org/data/keyword/27114452 | + | #Larance M, Kirkwood KJ, Tinti M, Murillo AB, Ferguson MA, Lamond AI, (2016) "Global Membrane Protein Interactome Analysis using In vivo Crosslinking and MS-based Protein Correlation Profiling." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27114452 27114452]; doi: [https://dx.doi.org/10.1074/mcp.O115.055467 10.1074/mcp.O115.055467]; GPMDB: [http://gpmdb.org/data/keyword/27114452 247]. |
+ | #Laghmani K, Beck BB, Yang SS, Seaayfan E, Wenzel A, Reusch B, Vitzthum H, Priem D, Demaretz S, Bergmann K, Duin LK, Göbel H, Mache C, Thiele H, Bartram MP, Dombret C, Altmüller J, Nürnberg P, Benzing T, Levtchenko E, Seyberth HW, Klaus G, Yigit G, Lin SH, Timmer A, de Koning TJ, Scherjon SA, Schlingmann KP, Bertrand MJ, Rinschen MM, de Backer O, Konrad M, Kömhoff M, (2016) "Polyhydramnios, Transient Antenatal Bartter's Syndrome, and MAGED2 Mutations." <i>N Engl J Med</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27120771 27120771]; doi: [https://dx.doi.org/10.1056/NEJMoa1507629 10.1056/NEJMoa1507629]; GPMDB: [http://gpmdb.org/data/keyword/27120771 21]. | ||
+ | #Eyckerman S, Titeca K, Van Quickelberghe E, Cloots E, Verhee A, Samyn N, De Ceuninck L, Timmerman E, De Sutter D, Lievens S, Van Calenbergh S, Gevaert K, Tavernier J, (2016) "Trapping mammalian protein complexes in viral particles." <i>Nat Commun</i> <b>7</b>:11416; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27122307 27122307]; doi: [https://dx.doi.org/10.1038/ncomms11416 10.1038/ncomms11416]; GPMDB: [http://gpmdb.org/data/keyword/27122307 58]. | ||
+ | #Ori A, Toyama BH, Harris MS, Bock T, Iskar M, Bork P, Ingolia NT, Hetzer MW, Beck M, (2015) "Integrated Transcriptome and Proteome Analyses Reveal Organ-Specific Proteome Deterioration in Old Rats." <i>Cell Syst</i> <b>1</b>(3):224–37; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27135913 27135913]; doi: [https://dx.doi.org/10.1016/j.cels.2015.08.012 10.1016/j.cels.2015.08.012]; GPMDB: [http://gpmdb.org/data/keyword/27135913 190]. |
GPMDB was originally constructed to serve as a reference work for all publicly available proteomics generated using tandem mass spectrometry. Public data is downloaded and reanalyzed using the current version of X! Tandem. The result files generated by the reanalysis and the relevant metadata are imported into the database and made available through the associated web site, ftp site and REST interfaces.
Contents |
The following public data repositories are checked daily for new suitable raw data for reanalysis:
Data made available from specific large projects, such as CPTAC or the Human Proteome Atlas, are also included when they are made available. Every effort is made so that reanalyzed results from all data sources are made available within 48 hours of their being released. In addition, data from lab web sites, ftp sites and direct contributions through the GPM sites made available to researchers are imported into GPMDB as part of a daily incremental update process.
GPMDB has been in operation since Jan. 1, 2004. Several large data source repositories have come into existence and ceased activity in the period since that time. All of the data from those repositories (e.g., TRANCHE, Peptidome) were reanalyzed and stored in GPMDB and they are still available even though the source repository sites are no longer active.
Simply because data is made available does not mean that it will be included in GPMDB. The data must pass our internal automated quality control tests for its initial acceptance and it may be rejected subsequently because of either quality or originality concerns.
The following is a data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list was current, as of May 8, 2016.