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==Data from publications== | ==Data from publications== | ||
- | The following is a list of data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list was current, as of Feb | + | The following is a list of data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list was current, as of Feb 21, 2022. |
#Lipton MS, <i>et al.</i> (2002) "Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags." <i>Proc Natl Acad Sci U S A</i> <b>99</b>(17):11049–54; PMID: [https://pubmed.ncbi.nlm.nih.gov/12177431 12177431]; doi: [https://dx.doi.org/10.1073/pnas.172170199 10.1073/pnas.172170199]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/12177431 498]. | #Lipton MS, <i>et al.</i> (2002) "Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags." <i>Proc Natl Acad Sci U S A</i> <b>99</b>(17):11049–54; PMID: [https://pubmed.ncbi.nlm.nih.gov/12177431 12177431]; doi: [https://dx.doi.org/10.1073/pnas.172170199 10.1073/pnas.172170199]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/12177431 498]. | ||
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#Mirauta BA, <i>et al.</i> (2020) "Population-scale proteome variation in human induced pluripotent stem cells." <i>Elife</i>; PMID: [https://pubmed.ncbi.nlm.nih.gov/32773033 32773033]; doi: [https://dx.doi.org/10.7554/eLife.57390 10.7554/eLife.57390]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32773033 16]. | #Mirauta BA, <i>et al.</i> (2020) "Population-scale proteome variation in human induced pluripotent stem cells." <i>Elife</i>; PMID: [https://pubmed.ncbi.nlm.nih.gov/32773033 32773033]; doi: [https://dx.doi.org/10.7554/eLife.57390 10.7554/eLife.57390]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32773033 16]. | ||
#Ripmeester EGJ, <i>et al.</i> (2020) "Impaired chondrocyte U3 snoRNA expression in osteoarthritis impacts the chondrocyte protein translation apparatus." <i>Sci Rep</i> <b>10</b>(1):13426; PMID: [https://pubmed.ncbi.nlm.nih.gov/32778764 32778764]; doi: [https://dx.doi.org/10.1038/s41598-020-70453-9 10.1038/s41598-020-70453-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32778764 6]. | #Ripmeester EGJ, <i>et al.</i> (2020) "Impaired chondrocyte U3 snoRNA expression in osteoarthritis impacts the chondrocyte protein translation apparatus." <i>Sci Rep</i> <b>10</b>(1):13426; PMID: [https://pubmed.ncbi.nlm.nih.gov/32778764 32778764]; doi: [https://dx.doi.org/10.1038/s41598-020-70453-9 10.1038/s41598-020-70453-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32778764 6]. | ||
+ | #Birkelund S, <i>et al.</i> (2020) "Proteomic analysis of synovial fluid from rheumatic arthritis and spondyloarthritis patients." <i>Clin Proteomics</i> <b>17</b>:29; PMID: [https://pubmed.ncbi.nlm.nih.gov/32782445 32782445]; doi: [https://dx.doi.org/10.1186/s12014-020-09292-9 10.1186/s12014-020-09292-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32782445 224]. | ||
#Steiner G, <i>et al.</i> (2020) "Enabling Routine MHC-II-Associated Peptide Proteomics for Risk Assessment of Drug-Induced Immunogenicity." <i>J Proteome Res</i> <b>19</b>(9):3792–3806; PMID: [https://pubmed.ncbi.nlm.nih.gov/32786679 32786679]; doi: [https://dx.doi.org/10.1021/acs.jproteome.0c00309 10.1021/acs.jproteome.0c00309]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32786679 162]. | #Steiner G, <i>et al.</i> (2020) "Enabling Routine MHC-II-Associated Peptide Proteomics for Risk Assessment of Drug-Induced Immunogenicity." <i>J Proteome Res</i> <b>19</b>(9):3792–3806; PMID: [https://pubmed.ncbi.nlm.nih.gov/32786679 32786679]; doi: [https://dx.doi.org/10.1021/acs.jproteome.0c00309 10.1021/acs.jproteome.0c00309]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32786679 162]. | ||
#D'Alessandro A, <i>et al.</i> (2020) "Serum Proteomics in COVID-19 Patients: Altered Coagulation and Complement Status as a Function of IL-6 Level." <i>J Proteome Res</i> <b>19</b>(11):4417–4427; PMID: [https://pubmed.ncbi.nlm.nih.gov/32786691 32786691]; doi: [https://dx.doi.org/10.1021/acs.jproteome.0c00365 10.1021/acs.jproteome.0c00365]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32786691 49]. | #D'Alessandro A, <i>et al.</i> (2020) "Serum Proteomics in COVID-19 Patients: Altered Coagulation and Complement Status as a Function of IL-6 Level." <i>J Proteome Res</i> <b>19</b>(11):4417–4427; PMID: [https://pubmed.ncbi.nlm.nih.gov/32786691 32786691]; doi: [https://dx.doi.org/10.1021/acs.jproteome.0c00365 10.1021/acs.jproteome.0c00365]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/32786691 49]. | ||
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#Zhao Q, <i>et al.</i> (2020) "Lysine Acetylome Study of Human Hepatocellular Carcinoma Tissues for Biomarkers and Therapeutic Targets Discovery." <i>Front Genet</i> <b>11</b>:572663; PMID: [https://pubmed.ncbi.nlm.nih.gov/33093847 33093847]; doi: [https://dx.doi.org/10.3389/fgene.2020.572663 10.3389/fgene.2020.572663]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33093847 1]. | #Zhao Q, <i>et al.</i> (2020) "Lysine Acetylome Study of Human Hepatocellular Carcinoma Tissues for Biomarkers and Therapeutic Targets Discovery." <i>Front Genet</i> <b>11</b>:572663; PMID: [https://pubmed.ncbi.nlm.nih.gov/33093847 33093847]; doi: [https://dx.doi.org/10.3389/fgene.2020.572663 10.3389/fgene.2020.572663]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33093847 1]. | ||
#Ilik İA, <i>et al.</i> (2020) "SON and SRRM2 are essential for nuclear speckle formation." <i>Elife</i>; PMID: [https://pubmed.ncbi.nlm.nih.gov/33095160 33095160]; doi: [https://dx.doi.org/10.7554/eLife.60579 10.7554/eLife.60579]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33095160 6]. | #Ilik İA, <i>et al.</i> (2020) "SON and SRRM2 are essential for nuclear speckle formation." <i>Elife</i>; PMID: [https://pubmed.ncbi.nlm.nih.gov/33095160 33095160]; doi: [https://dx.doi.org/10.7554/eLife.60579 10.7554/eLife.60579]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33095160 6]. | ||
+ | #Voß H, <i>et al.</i> (2020) "Differential regulation of extracellular matrix proteins in three recurrent liver metastases of a single patient with colorectal cancer." <i>Clin Exp Metastasis</i> <b>37</b>(6):649–656; PMID: [https://pubmed.ncbi.nlm.nih.gov/33099724 33099724]; doi: [https://dx.doi.org/10.1007/s10585-020-10058-8 10.1007/s10585-020-10058-8]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33099724 12]. | ||
#Di Meo A, <i>et al.</i> (2021) "Proteomic Profiling of the Human Tissue and Biological Fluid Proteome." <i>J Proteome Res</i> <b>20</b>(1):444–452; PMID: [https://pubmed.ncbi.nlm.nih.gov/33107741 33107741]; doi: [https://dx.doi.org/10.1021/acs.jproteome.0c00502 10.1021/acs.jproteome.0c00502]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33107741 92]. | #Di Meo A, <i>et al.</i> (2021) "Proteomic Profiling of the Human Tissue and Biological Fluid Proteome." <i>J Proteome Res</i> <b>20</b>(1):444–452; PMID: [https://pubmed.ncbi.nlm.nih.gov/33107741 33107741]; doi: [https://dx.doi.org/10.1021/acs.jproteome.0c00502 10.1021/acs.jproteome.0c00502]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33107741 92]. | ||
#Alayi TD, <i>et al.</i> (2020) "Tandem Mass Tag-Based Serum Proteome Profiling for Biomarker Discovery in Young Duchenne Muscular Dystrophy Boys." <i>ACS Omega</i> <b>5</b>(41):26504–26517; PMID: [https://pubmed.ncbi.nlm.nih.gov/33110978 33110978]; doi: [https://dx.doi.org/10.1021/acsomega.0c03206 10.1021/acsomega.0c03206]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33110978 72]. | #Alayi TD, <i>et al.</i> (2020) "Tandem Mass Tag-Based Serum Proteome Profiling for Biomarker Discovery in Young Duchenne Muscular Dystrophy Boys." <i>ACS Omega</i> <b>5</b>(41):26504–26517; PMID: [https://pubmed.ncbi.nlm.nih.gov/33110978 33110978]; doi: [https://dx.doi.org/10.1021/acsomega.0c03206 10.1021/acsomega.0c03206]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33110978 72]. | ||
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#González-Prieto R, <i>et al.</i> (2021) "Global non-covalent SUMO interaction networks reveal SUMO-dependent stabilization of the non-homologous end joining complex." <i>Cell Rep</i> <b>34</b>(4):108691; PMID: [https://pubmed.ncbi.nlm.nih.gov/33503430 33503430]; doi: [https://dx.doi.org/10.1016/j.celrep.2021.108691 10.1016/j.celrep.2021.108691]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33503430 12]. | #González-Prieto R, <i>et al.</i> (2021) "Global non-covalent SUMO interaction networks reveal SUMO-dependent stabilization of the non-homologous end joining complex." <i>Cell Rep</i> <b>34</b>(4):108691; PMID: [https://pubmed.ncbi.nlm.nih.gov/33503430 33503430]; doi: [https://dx.doi.org/10.1016/j.celrep.2021.108691 10.1016/j.celrep.2021.108691]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33503430 12]. | ||
#Yang F, <i>et al.</i> (2020) "Integrative Proteomic and Phosphoproteomic Analyses of Granulosa Cells During Follicular Atresia in Porcine." <i>Front Cell Dev Biol</i> <b>8</b>:624985; PMID: [https://pubmed.ncbi.nlm.nih.gov/33520998 33520998]; doi: [https://dx.doi.org/10.3389/fcell.2020.624985 10.3389/fcell.2020.624985]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33520998 77]. | #Yang F, <i>et al.</i> (2020) "Integrative Proteomic and Phosphoproteomic Analyses of Granulosa Cells During Follicular Atresia in Porcine." <i>Front Cell Dev Biol</i> <b>8</b>:624985; PMID: [https://pubmed.ncbi.nlm.nih.gov/33520998 33520998]; doi: [https://dx.doi.org/10.3389/fcell.2020.624985 10.3389/fcell.2020.624985]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33520998 77]. | ||
+ | #Loh JT, <i>et al.</i> (2021) "Delineation of the pH-Responsive Regulon Controlled by the Helicobacter pylori ArsRS Two-Component System." <i>Infect Immun</i> <b>89</b>(4):; PMID: [https://pubmed.ncbi.nlm.nih.gov/33526561 33526561]; doi: [https://dx.doi.org/10.1128/IAI.00597-20 10.1128/IAI.00597-20]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33526561 22]. | ||
#Aravamudhan S, <i>et al.</i> (2021) "Phosphoproteomics of the developing heart identifies PERM1 - An outer mitochondrial membrane protein." <i>J Mol Cell Cardiol</i> <b>154</b>:41–59; PMID: [https://pubmed.ncbi.nlm.nih.gov/33549681 33549681]; doi: [https://dx.doi.org/10.1016/j.yjmcc.2021.01.010 10.1016/j.yjmcc.2021.01.010]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33549681 104]. | #Aravamudhan S, <i>et al.</i> (2021) "Phosphoproteomics of the developing heart identifies PERM1 - An outer mitochondrial membrane protein." <i>J Mol Cell Cardiol</i> <b>154</b>:41–59; PMID: [https://pubmed.ncbi.nlm.nih.gov/33549681 33549681]; doi: [https://dx.doi.org/10.1016/j.yjmcc.2021.01.010 10.1016/j.yjmcc.2021.01.010]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33549681 104]. | ||
#Bankar R, <i>et al.</i> (2021) "Proteomic investigation reveals dominant alterations of neutrophil degranulation and mRNA translation pathways in patients with COVID-19." <i>iScience</i> <b>24</b>(3):102135; PMID: [https://pubmed.ncbi.nlm.nih.gov/33558857 33558857]; doi: [https://dx.doi.org/10.1016/j.isci.2021.102135 10.1016/j.isci.2021.102135]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33558857 24]. | #Bankar R, <i>et al.</i> (2021) "Proteomic investigation reveals dominant alterations of neutrophil degranulation and mRNA translation pathways in patients with COVID-19." <i>iScience</i> <b>24</b>(3):102135; PMID: [https://pubmed.ncbi.nlm.nih.gov/33558857 33558857]; doi: [https://dx.doi.org/10.1016/j.isci.2021.102135 10.1016/j.isci.2021.102135]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/33558857 24]. | ||
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#Zhang X, <i>et al.</i> (2021) "The Insufficient Activation of RIG-I-Like Signaling Pathway Contributes to Highly Efficient Replication of Porcine Picornaviruses in IBRS-2 Cells." <i>Mol Cell Proteomics</i> <b>20</b>:100147; PMID: [https://pubmed.ncbi.nlm.nih.gov/34530158 34530158]; doi: [https://dx.doi.org/10.1016/j.mcpro.2021.100147 10.1016/j.mcpro.2021.100147]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34530158 4]. | #Zhang X, <i>et al.</i> (2021) "The Insufficient Activation of RIG-I-Like Signaling Pathway Contributes to Highly Efficient Replication of Porcine Picornaviruses in IBRS-2 Cells." <i>Mol Cell Proteomics</i> <b>20</b>:100147; PMID: [https://pubmed.ncbi.nlm.nih.gov/34530158 34530158]; doi: [https://dx.doi.org/10.1016/j.mcpro.2021.100147 10.1016/j.mcpro.2021.100147]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34530158 4]. | ||
#Tognoli ML, <i>et al.</i> (2021) "RASSF1C oncogene elicits amoeboid invasion, cancer stemness, and extracellular vesicle release via a SRC/Rho axis." <i>EMBO J</i> <b>40</b>(20):e107680; PMID: [https://pubmed.ncbi.nlm.nih.gov/34532864 34532864]; doi: [https://dx.doi.org/10.15252/embj.2021107680 10.15252/embj.2021107680]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34532864 4]. | #Tognoli ML, <i>et al.</i> (2021) "RASSF1C oncogene elicits amoeboid invasion, cancer stemness, and extracellular vesicle release via a SRC/Rho axis." <i>EMBO J</i> <b>40</b>(20):e107680; PMID: [https://pubmed.ncbi.nlm.nih.gov/34532864 34532864]; doi: [https://dx.doi.org/10.15252/embj.2021107680 10.15252/embj.2021107680]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34532864 4]. | ||
+ | #Ansari F, <i>et al.</i> (2021) "Quantification of NADH:ubiquinone oxidoreductase (complex I) content in biological samples." <i>J Biol Chem</i> <b>297</b>(4):101204; PMID: [https://pubmed.ncbi.nlm.nih.gov/34543622 34543622]; doi: [https://dx.doi.org/10.1016/j.jbc.2021.101204 10.1016/j.jbc.2021.101204]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34543622 2]. | ||
+ | #Sánchez-Ceinos J, <i>et al.</i> (2021) "Impaired mRNA splicing and proteostasis in preadipocytes in obesity-related metabolic disease." <i>Elife</i>; PMID: [https://pubmed.ncbi.nlm.nih.gov/34545810 34545810]; doi: [https://dx.doi.org/10.7554/eLife.65996 10.7554/eLife.65996]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34545810 12]. | ||
#Champagne J, <i>et al.</i> (2021) "Oncogene-dependent sloppiness in mRNA translation." <i>Mol Cell</i> <b>81</b>(22):4709–4721.e9; PMID: [https://pubmed.ncbi.nlm.nih.gov/34562372 34562372]; doi: [https://dx.doi.org/10.1016/j.molcel.2021.09.002 10.1016/j.molcel.2021.09.002]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34562372 30]. | #Champagne J, <i>et al.</i> (2021) "Oncogene-dependent sloppiness in mRNA translation." <i>Mol Cell</i> <b>81</b>(22):4709–4721.e9; PMID: [https://pubmed.ncbi.nlm.nih.gov/34562372 34562372]; doi: [https://dx.doi.org/10.1016/j.molcel.2021.09.002 10.1016/j.molcel.2021.09.002]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34562372 30]. | ||
#Gao Z, <i>et al.</i> (2021) "A Quantitative Proteomic Approach for the Identification of DNA Guanine Quadruplex-Binding Proteins." <i>J Proteome Res</i> <b>20</b>(11):4919–4924; PMID: [https://pubmed.ncbi.nlm.nih.gov/34570971 34570971]; doi: [https://dx.doi.org/10.1021/acs.jproteome.1c00603 10.1021/acs.jproteome.1c00603]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34570971 30]. | #Gao Z, <i>et al.</i> (2021) "A Quantitative Proteomic Approach for the Identification of DNA Guanine Quadruplex-Binding Proteins." <i>J Proteome Res</i> <b>20</b>(11):4919–4924; PMID: [https://pubmed.ncbi.nlm.nih.gov/34570971 34570971]; doi: [https://dx.doi.org/10.1021/acs.jproteome.1c00603 10.1021/acs.jproteome.1c00603]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34570971 30]. | ||
+ | #Braun H, <i>et al.</i> (2021) "Impact of DICER1 and DROSHA on the Angiogenic Capacity of Human Endothelial Cells." <i>Int J Mol Sci</i> <b>22</b>(18):; PMID: [https://pubmed.ncbi.nlm.nih.gov/34576018 34576018]; doi: [https://dx.doi.org/10.3390/ijms22189855 10.3390/ijms22189855]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34576018 4]. | ||
+ | #Amargant F, <i>et al.</i> (2021) "The human sperm basal body is a complex centrosome important for embryo preimplantation development." <i>Mol Hum Reprod</i> <b>27</b>(11):; PMID: [https://pubmed.ncbi.nlm.nih.gov/34581808 34581808]; doi: [https://dx.doi.org/10.1093/molehr/gaab062 10.1093/molehr/gaab062]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34581808 18]. | ||
#Ahmadov U, <i>et al.</i> (2021) "The long non-coding RNA HOTAIRM1 promotes tumor aggressiveness and radiotherapy resistance in glioblastoma." <i>Cell Death Dis</i> <b>12</b>(10):885; PMID: [https://pubmed.ncbi.nlm.nih.gov/34584066 34584066]; doi: [https://dx.doi.org/10.1038/s41419-021-04146-0 10.1038/s41419-021-04146-0]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34584066 15]. | #Ahmadov U, <i>et al.</i> (2021) "The long non-coding RNA HOTAIRM1 promotes tumor aggressiveness and radiotherapy resistance in glioblastoma." <i>Cell Death Dis</i> <b>12</b>(10):885; PMID: [https://pubmed.ncbi.nlm.nih.gov/34584066 34584066]; doi: [https://dx.doi.org/10.1038/s41419-021-04146-0 10.1038/s41419-021-04146-0]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34584066 15]. | ||
#Gomkale R, <i>et al.</i> (2021) "Mapping protein interactions in the active TOM-TIM23 supercomplex." <i>Nat Commun</i> <b>12</b>(1):5715; PMID: [https://pubmed.ncbi.nlm.nih.gov/34588454 34588454]; doi: [https://dx.doi.org/10.1038/s41467-021-26016-1 10.1038/s41467-021-26016-1]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34588454 87]. | #Gomkale R, <i>et al.</i> (2021) "Mapping protein interactions in the active TOM-TIM23 supercomplex." <i>Nat Commun</i> <b>12</b>(1):5715; PMID: [https://pubmed.ncbi.nlm.nih.gov/34588454 34588454]; doi: [https://dx.doi.org/10.1038/s41467-021-26016-1 10.1038/s41467-021-26016-1]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34588454 87]. | ||
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#Yau B, <i>et al.</i> (2021) "Proteomic pathways to metabolic disease and type 2 diabetes in the pancreatic islet." <i>iScience</i> <b>24</b>(10):103099; PMID: [https://pubmed.ncbi.nlm.nih.gov/34622154 34622154]; doi: [https://dx.doi.org/10.1016/j.isci.2021.103099 10.1016/j.isci.2021.103099]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34622154 38]. | #Yau B, <i>et al.</i> (2021) "Proteomic pathways to metabolic disease and type 2 diabetes in the pancreatic islet." <i>iScience</i> <b>24</b>(10):103099; PMID: [https://pubmed.ncbi.nlm.nih.gov/34622154 34622154]; doi: [https://dx.doi.org/10.1016/j.isci.2021.103099 10.1016/j.isci.2021.103099]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34622154 38]. | ||
#Di Persio S, <i>et al.</i> (2021) "Single-cell RNA-seq unravels alterations of the human spermatogonial stem cell compartment in patients with impaired spermatogenesis." <i>Cell Rep Med</i> <b>2</b>(9):100395; PMID: [https://pubmed.ncbi.nlm.nih.gov/34622232 34622232]; doi: [https://dx.doi.org/10.1016/j.xcrm.2021.100395 10.1016/j.xcrm.2021.100395]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34622232 2]. | #Di Persio S, <i>et al.</i> (2021) "Single-cell RNA-seq unravels alterations of the human spermatogonial stem cell compartment in patients with impaired spermatogenesis." <i>Cell Rep Med</i> <b>2</b>(9):100395; PMID: [https://pubmed.ncbi.nlm.nih.gov/34622232 34622232]; doi: [https://dx.doi.org/10.1016/j.xcrm.2021.100395 10.1016/j.xcrm.2021.100395]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34622232 2]. | ||
+ | #Li J, <i>et al.</i> (2021) "Proteome-wide mapping of short-lived proteins in human cells." <i>Mol Cell</i> <b>81</b>(22):4722–4735.e5; PMID: [https://pubmed.ncbi.nlm.nih.gov/34626566 34626566]; doi: [https://dx.doi.org/10.1016/j.molcel.2021.09.015 10.1016/j.molcel.2021.09.015]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34626566 4]. | ||
+ | #Imasawa T, <i>et al.</i> (2021) "Proteomic Study of Low-Birth-Weight Nephropathy in Rats." <i>Int J Mol Sci</i> <b>22</b>(19):; PMID: [https://pubmed.ncbi.nlm.nih.gov/34638634 34638634]; doi: [https://dx.doi.org/10.3390/ijms221910294 10.3390/ijms221910294]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34638634 14]. | ||
#Lorente E, <i>et al.</i> (2021) "Acid Stripping after Infection Improves the Detection of Viral HLA Class I Natural Ligands Identified by Mass Spectrometry." <i>Int J Mol Sci</i> <b>22</b>(19):; PMID: [https://pubmed.ncbi.nlm.nih.gov/34638844 34638844]; doi: [https://dx.doi.org/10.3390/ijms221910503 10.3390/ijms221910503]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34638844 12]. | #Lorente E, <i>et al.</i> (2021) "Acid Stripping after Infection Improves the Detection of Viral HLA Class I Natural Ligands Identified by Mass Spectrometry." <i>Int J Mol Sci</i> <b>22</b>(19):; PMID: [https://pubmed.ncbi.nlm.nih.gov/34638844 34638844]; doi: [https://dx.doi.org/10.3390/ijms221910503 10.3390/ijms221910503]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34638844 12]. | ||
#Zhang YH, <i>et al.</i> (2021) "Lung proteomic biomarkers associated with chronic obstructive pulmonary disease." <i>Am J Physiol Lung Cell Mol Physiol</i> <b>321</b>(6):L1119–L1130; PMID: [https://pubmed.ncbi.nlm.nih.gov/34668408 34668408]; doi: [https://dx.doi.org/10.1152/ajplung.00198.2021 10.1152/ajplung.00198.2021]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34668408 456]. | #Zhang YH, <i>et al.</i> (2021) "Lung proteomic biomarkers associated with chronic obstructive pulmonary disease." <i>Am J Physiol Lung Cell Mol Physiol</i> <b>321</b>(6):L1119–L1130; PMID: [https://pubmed.ncbi.nlm.nih.gov/34668408 34668408]; doi: [https://dx.doi.org/10.1152/ajplung.00198.2021 10.1152/ajplung.00198.2021]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34668408 456]. | ||
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#Shlomovitz I, <i>et al.</i> (2021) "Proteomic analysis of necroptotic extracellular vesicles." <i>Cell Death Dis</i> <b>12</b>(11):1059; PMID: [https://pubmed.ncbi.nlm.nih.gov/34750357 34750357]; doi: [https://dx.doi.org/10.1038/s41419-021-04317-z 10.1038/s41419-021-04317-z]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34750357 12]. | #Shlomovitz I, <i>et al.</i> (2021) "Proteomic analysis of necroptotic extracellular vesicles." <i>Cell Death Dis</i> <b>12</b>(11):1059; PMID: [https://pubmed.ncbi.nlm.nih.gov/34750357 34750357]; doi: [https://dx.doi.org/10.1038/s41419-021-04317-z 10.1038/s41419-021-04317-z]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34750357 12]. | ||
#Froehlich JW, <i>et al.</i> (2021) "The Urinary Proteomic Profile Implicates Key Regulators for Urologic Chronic Pelvic Pain Syndrome (UCPPS): A MAPP Research Network Study." <i>Mol Cell Proteomics</i> <b>21</b>(1):100176; PMID: [https://pubmed.ncbi.nlm.nih.gov/34774759 34774759]; doi: [https://dx.doi.org/10.1016/j.mcpro.2021.100176 10.1016/j.mcpro.2021.100176]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34774759 52]. | #Froehlich JW, <i>et al.</i> (2021) "The Urinary Proteomic Profile Implicates Key Regulators for Urologic Chronic Pelvic Pain Syndrome (UCPPS): A MAPP Research Network Study." <i>Mol Cell Proteomics</i> <b>21</b>(1):100176; PMID: [https://pubmed.ncbi.nlm.nih.gov/34774759 34774759]; doi: [https://dx.doi.org/10.1016/j.mcpro.2021.100176 10.1016/j.mcpro.2021.100176]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34774759 52]. | ||
+ | #Simancas Escorcia V, <i>et al.</i> (2021) "Pathogenesis of Enamel-Renal Syndrome Associated Gingival Fibromatosis: A Proteomic Approach." <i>Front Endocrinol (Lausanne)</i> <b>12</b>:752568; PMID: [https://pubmed.ncbi.nlm.nih.gov/34777248 34777248]; doi: [https://dx.doi.org/10.3389/fendo.2021.752568 10.3389/fendo.2021.752568]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34777248 14]. | ||
#Capizzi M, <i>et al.</i> (2021) "Developmental defects in Huntington's disease show that axonal growth and microtubule reorganization require NUMA1." <i>Neuron</i>; PMID: [https://pubmed.ncbi.nlm.nih.gov/34793694 34793694]; doi: [https://dx.doi.org/10.1016/j.neuron.2021.10.033 10.1016/j.neuron.2021.10.033]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34793694 10]. | #Capizzi M, <i>et al.</i> (2021) "Developmental defects in Huntington's disease show that axonal growth and microtubule reorganization require NUMA1." <i>Neuron</i>; PMID: [https://pubmed.ncbi.nlm.nih.gov/34793694 34793694]; doi: [https://dx.doi.org/10.1016/j.neuron.2021.10.033 10.1016/j.neuron.2021.10.033]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34793694 10]. | ||
#Stirm M, <i>et al.</i> (2021) "A scalable, clinically severe pig model for Duchenne muscular dystrophy." <i>Dis Model Mech</i> <b>14</b>(12):; PMID: [https://pubmed.ncbi.nlm.nih.gov/34796900 34796900]; doi: [https://dx.doi.org/10.1242/dmm.049285 10.1242/dmm.049285]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34796900 42]. | #Stirm M, <i>et al.</i> (2021) "A scalable, clinically severe pig model for Duchenne muscular dystrophy." <i>Dis Model Mech</i> <b>14</b>(12):; PMID: [https://pubmed.ncbi.nlm.nih.gov/34796900 34796900]; doi: [https://dx.doi.org/10.1242/dmm.049285 10.1242/dmm.049285]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34796900 42]. | ||
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#Ziemlińska E, <i>et al.</i> (2021) "Palm Oil-Rich Diet Affects Murine Liver Proteome and <i>S</i>-Palmitoylome." <i>Int J Mol Sci</i> <b>22</b>(23):; PMID: [https://pubmed.ncbi.nlm.nih.gov/34884899 34884899]; doi: [https://dx.doi.org/10.3390/ijms222313094 10.3390/ijms222313094]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34884899 24]. | #Ziemlińska E, <i>et al.</i> (2021) "Palm Oil-Rich Diet Affects Murine Liver Proteome and <i>S</i>-Palmitoylome." <i>Int J Mol Sci</i> <b>22</b>(23):; PMID: [https://pubmed.ncbi.nlm.nih.gov/34884899 34884899]; doi: [https://dx.doi.org/10.3390/ijms222313094 10.3390/ijms222313094]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34884899 24]. | ||
#Taher L, <i>et al.</i> (2021) "The proteome, not the transcriptome, predicts that oocyte superovulation affects embryonic phenotypes in mice." <i>Sci Rep</i> <b>11</b>(1):23731; PMID: [https://pubmed.ncbi.nlm.nih.gov/34887460 34887460]; doi: [https://dx.doi.org/10.1038/s41598-021-03054-9 10.1038/s41598-021-03054-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34887460 28]. | #Taher L, <i>et al.</i> (2021) "The proteome, not the transcriptome, predicts that oocyte superovulation affects embryonic phenotypes in mice." <i>Sci Rep</i> <b>11</b>(1):23731; PMID: [https://pubmed.ncbi.nlm.nih.gov/34887460 34887460]; doi: [https://dx.doi.org/10.1038/s41598-021-03054-9 10.1038/s41598-021-03054-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34887460 28]. | ||
+ | #Arico DS, <i>et al.</i> (2021) "A novel strategy to uncover specific GO terms/phosphorylation pathways in phosphoproteomic data in Arabidopsis thaliana." <i>BMC Plant Biol</i> <b>21</b>(1):592; PMID: [https://pubmed.ncbi.nlm.nih.gov/34906086 34906086]; doi: [https://dx.doi.org/10.1186/s12870-021-03377-9 10.1186/s12870-021-03377-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34906086 9]. | ||
+ | #Chen L, <i>et al.</i> (2021) "Combined Transcriptome and Proteome Profiling for Role of pfEMP1 in Antimalarial Mechanism of Action of Dihydroartemisinin." <i>Microbiol Spectr</i> <b>9</b>(3):e0127821; PMID: [https://pubmed.ncbi.nlm.nih.gov/34908430 34908430]; doi: [https://dx.doi.org/10.1128/Spectrum.01278-21 10.1128/Spectrum.01278-21]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34908430 1]. | ||
#Wang Q, <i>et al.</i> (2021) "Glutamine-fructose-6-phosphate transaminase 2 (GFPT2) is upregulated in breast epithelial-mesenchymal transition and responds to oxidative stress." <i>Mol Cell Proteomics</i> <b></b>:100185; PMID: [https://pubmed.ncbi.nlm.nih.gov/34923141 34923141]; doi: [https://dx.doi.org/10.1016/j.mcpro.2021.100185 10.1016/j.mcpro.2021.100185]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34923141 32]. | #Wang Q, <i>et al.</i> (2021) "Glutamine-fructose-6-phosphate transaminase 2 (GFPT2) is upregulated in breast epithelial-mesenchymal transition and responds to oxidative stress." <i>Mol Cell Proteomics</i> <b></b>:100185; PMID: [https://pubmed.ncbi.nlm.nih.gov/34923141 34923141]; doi: [https://dx.doi.org/10.1016/j.mcpro.2021.100185 10.1016/j.mcpro.2021.100185]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34923141 32]. | ||
#Thorne LG, <i>et al.</i> (2021) "Evolution of enhanced innate immune evasion by SARS-CoV-2." <i>Nature</i>; PMID: [https://pubmed.ncbi.nlm.nih.gov/34942634 34942634]; doi: [https://dx.doi.org/10.1038/s41586-021-04352-y 10.1038/s41586-021-04352-y]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34942634 16]. | #Thorne LG, <i>et al.</i> (2021) "Evolution of enhanced innate immune evasion by SARS-CoV-2." <i>Nature</i>; PMID: [https://pubmed.ncbi.nlm.nih.gov/34942634 34942634]; doi: [https://dx.doi.org/10.1038/s41586-021-04352-y 10.1038/s41586-021-04352-y]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34942634 16]. | ||
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#Kadefors M, <i>et al.</i> (2021) "CD105<sup>+</sup>CD90<sup>+</sup>CD13<sup>+</sup> identifies a clonogenic subset of adventitial lung fibroblasts." <i>Sci Rep</i> <b>11</b>(1):24417; PMID: [https://pubmed.ncbi.nlm.nih.gov/34952905 34952905]; doi: [https://dx.doi.org/10.1038/s41598-021-03963-9 10.1038/s41598-021-03963-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34952905 40]. | #Kadefors M, <i>et al.</i> (2021) "CD105<sup>+</sup>CD90<sup>+</sup>CD13<sup>+</sup> identifies a clonogenic subset of adventitial lung fibroblasts." <i>Sci Rep</i> <b>11</b>(1):24417; PMID: [https://pubmed.ncbi.nlm.nih.gov/34952905 34952905]; doi: [https://dx.doi.org/10.1038/s41598-021-03963-9 10.1038/s41598-021-03963-9]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34952905 40]. | ||
#Halkoum R, <i>et al.</i> (2021) "Glyoxal induces senescence in human keratinocytes through oxidative stress and activation of the AKT/FOXO3a/p27<sup>KIP1</sup> pathway." <i>J Invest Dermatol</i>; PMID: [https://pubmed.ncbi.nlm.nih.gov/34971698 34971698]; doi: [https://dx.doi.org/10.1016/j.jid.2021.12.022 10.1016/j.jid.2021.12.022]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34971698 4]. | #Halkoum R, <i>et al.</i> (2021) "Glyoxal induces senescence in human keratinocytes through oxidative stress and activation of the AKT/FOXO3a/p27<sup>KIP1</sup> pathway." <i>J Invest Dermatol</i>; PMID: [https://pubmed.ncbi.nlm.nih.gov/34971698 34971698]; doi: [https://dx.doi.org/10.1016/j.jid.2021.12.022 10.1016/j.jid.2021.12.022]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34971698 4]. | ||
+ | #Zhang Y, <i>et al.</i> (2022) "TMT-based quantitative proteomic profiling of human monocyte-derived macrophages and foam cells." <i>Proteome Sci</i> <b>20</b>(1):1; PMID: [https://pubmed.ncbi.nlm.nih.gov/34980145 34980145]; doi: [https://dx.doi.org/10.1186/s12953-021-00183-x 10.1186/s12953-021-00183-x]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34980145 1]. | ||
#Perivolidi VI, <i>et al.</i> (2022) "Proteomic Identification of the SLC25A46 Interactome in Transgenic Mice Expressing SLC25A46-FLAG." <i>J Proteome Res</i>; PMID: [https://pubmed.ncbi.nlm.nih.gov/34983179 34983179]; doi: [https://dx.doi.org/10.1021/acs.jproteome.1c00728 10.1021/acs.jproteome.1c00728]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34983179 24]. | #Perivolidi VI, <i>et al.</i> (2022) "Proteomic Identification of the SLC25A46 Interactome in Transgenic Mice Expressing SLC25A46-FLAG." <i>J Proteome Res</i>; PMID: [https://pubmed.ncbi.nlm.nih.gov/34983179 34983179]; doi: [https://dx.doi.org/10.1021/acs.jproteome.1c00728 10.1021/acs.jproteome.1c00728]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34983179 24]. | ||
#Zille M, <i>et al.</i> (2022) "Hemin-Induced Death Models Hemorrhagic Stroke and Is a Variant of Classical Neuronal Ferroptosis." <i>J Neurosci</i>; PMID: [https://pubmed.ncbi.nlm.nih.gov/34987108 34987108]; doi: [https://dx.doi.org/10.1523/JNEUROSCI.0923-20.2021 10.1523/JNEUROSCI.0923-20.2021]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34987108 28]. | #Zille M, <i>et al.</i> (2022) "Hemin-Induced Death Models Hemorrhagic Stroke and Is a Variant of Classical Neuronal Ferroptosis." <i>J Neurosci</i>; PMID: [https://pubmed.ncbi.nlm.nih.gov/34987108 34987108]; doi: [https://dx.doi.org/10.1523/JNEUROSCI.0923-20.2021 10.1523/JNEUROSCI.0923-20.2021]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/34987108 28]. | ||
+ | #Buks R, <i>et al.</i> (2021) "Altered Ca<sup>2+</sup> Homeostasis in Red Blood Cells of Polycythemia Vera Patients Following Disturbed Organelle Sorting during Terminal Erythropoiesis." <i>Cells</i> <b>11</b>(1):; PMID: [https://pubmed.ncbi.nlm.nih.gov/35011611 35011611]; doi: [https://dx.doi.org/10.3390/cells11010049 10.3390/cells11010049]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/35011611 3]. | ||
#Smyth SP, <i>et al.</i> (2022) "Elucidation of the protein composition of mouse seminal vesicle fluid." <i>Proteomics</i> <b></b>:e2100227; PMID: [https://pubmed.ncbi.nlm.nih.gov/35014747 35014747]; doi: [https://dx.doi.org/10.1002/pmic.202100227 10.1002/pmic.202100227]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/35014747 5]. | #Smyth SP, <i>et al.</i> (2022) "Elucidation of the protein composition of mouse seminal vesicle fluid." <i>Proteomics</i> <b></b>:e2100227; PMID: [https://pubmed.ncbi.nlm.nih.gov/35014747 35014747]; doi: [https://dx.doi.org/10.1002/pmic.202100227 10.1002/pmic.202100227]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/35014747 5]. | ||
#Oom AL, <i>et al.</i> (2022) "Comparative Analysis of T Cell Spatial Proteomics and the Influence of HIV Expression." <i>Mol Cell Proteomics</i> <b></b>:100194; PMID: [https://pubmed.ncbi.nlm.nih.gov/35017099 35017099]; doi: [https://dx.doi.org/10.1016/j.mcpro.2022.100194 10.1016/j.mcpro.2022.100194]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/35017099 12]. | #Oom AL, <i>et al.</i> (2022) "Comparative Analysis of T Cell Spatial Proteomics and the Influence of HIV Expression." <i>Mol Cell Proteomics</i> <b></b>:100194; PMID: [https://pubmed.ncbi.nlm.nih.gov/35017099 35017099]; doi: [https://dx.doi.org/10.1016/j.mcpro.2022.100194 10.1016/j.mcpro.2022.100194]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/35017099 12]. | ||
+ | #Xu H, <i>et al.</i> (2022) "Proteomic profiling identifies novel diagnostic biomarkers and molecular subtypes for mucinous tubular and spindle cell carcinoma of the kidney." <i>J Pathol</i>; PMID: [https://pubmed.ncbi.nlm.nih.gov/35043389 35043389]; doi: [https://dx.doi.org/10.1002/path.5869 10.1002/path.5869]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/35043389 5]. | ||
+ | #Erber L, <i>et al.</i> (2022) "Quantitative Proteome and Transcriptome Dynamics Analysis Reveals Iron Deficiency Response Networks and Signature in Neuronal Cells." <i>Molecules</i> <b>27</b>(2):; PMID: [https://pubmed.ncbi.nlm.nih.gov/35056799 35056799]; doi: [https://dx.doi.org/10.3390/molecules27020484 10.3390/molecules27020484]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/35056799 24]. | ||
#Ali N, <i>et al.</i> (2022) "Proteomics profiling of human synovial fluid suggests increased protein interplay in early-osteoarthritis (OA) that is lost in late-stage OA." <i>Mol Cell Proteomics</i> <b></b>:100200; PMID: [https://pubmed.ncbi.nlm.nih.gov/35074580 35074580]; doi: [https://dx.doi.org/10.1016/j.mcpro.2022.100200 10.1016/j.mcpro.2022.100200]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/35074580 61]. | #Ali N, <i>et al.</i> (2022) "Proteomics profiling of human synovial fluid suggests increased protein interplay in early-osteoarthritis (OA) that is lost in late-stage OA." <i>Mol Cell Proteomics</i> <b></b>:100200; PMID: [https://pubmed.ncbi.nlm.nih.gov/35074580 35074580]; doi: [https://dx.doi.org/10.1016/j.mcpro.2022.100200 10.1016/j.mcpro.2022.100200]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/35074580 61]. | ||
+ | #Yin H, <i>et al.</i> (2022) "A20 and ABIN-1 cooperate in balancing CBM complex-triggered NF-κB signaling in activated T cells." <i>Cell Mol Life Sci</i> <b>79</b>(2):112; PMID: [https://pubmed.ncbi.nlm.nih.gov/35099607 35099607]; doi: [https://dx.doi.org/10.1007/s00018-022-04154-z 10.1007/s00018-022-04154-z]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/35099607 9]. | ||
+ | #Correll VL, <i>et al.</i> (2022) "Optimization of small extracellular vesicle isolation from expressed prostatic secretions in urine for in-depth proteomic analysis." <i>J Extracell Vesicles</i> <b>11</b>(2):e12184; PMID: [https://pubmed.ncbi.nlm.nih.gov/35119778 35119778]; doi: [https://dx.doi.org/10.1002/jev2.12184 10.1002/jev2.12184]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/35119778 9]. | ||
+ | #Rezaei-Gazik M, <i>et al.</i> (2022) "Direct visualization of pre-protamine 2 detects protamine assembly failures and predicts ICSI success." <i>Mol Hum Reprod</i>; PMID: [https://pubmed.ncbi.nlm.nih.gov/35150275 35150275]; doi: [https://dx.doi.org/10.1093/molehr/gaac004 10.1093/molehr/gaac004]; GPMDB: [https://gpmdb.thegpm.org/data/keyword/35150275 24]. |
GPMDB was originally constructed to serve as a reference work for all publicly available proteomics generated using tandem mass spectrometry. Public data is downloaded and reanalyzed using the current version of X! Tandem. The result files generated by the reanalysis and the relevant metadata are imported into the database and made available through the associated web site, ftp site and REST interfaces.
Contents |
The following public data repositories are checked daily for new suitable raw data for reanalysis:
Data made available from specific large projects, such as CPTAC or the Human Proteome Atlas, are also included when they are made available. Every effort is made so that reanalyzed results from all data sources are made available within 48 hours of their being released. In addition, data from lab web sites, ftp sites and direct contributions through the GPM sites made available to researchers are imported into GPMDB as part of a daily incremental update process.
GPMDB has been in operation since Jan. 1, 2004. Several large data source repositories have come into existence and ceased activity in the period since that time. All of the data from those repositories (e.g., TRANCHE, Peptidome) were reanalyzed and stored in GPMDB and they are still available even though the source repository sites are no longer active.
Simply because data is made available does not mean that it will be included in GPMDB. The data must be approved our quality control AI for its initial acceptance and it may be rejected subsequently because of either quality or originality concerns.
CAUTION:Many datasets/papers contain serious errors in their metadata/methods sections. When using data from repositories, it is important to be skeptical of any experimental parameter (cell line, tissue type, modification reagents, quantitation methods, etc.) that may impact on your use of the data. We have corrected for as many of these errors as we could detect, but there is no way to be sure that we found them all. When attempting to analyze or reproduce results, keep in mind the likelihood that key parts of the experimental methods may have been recorded incorrectly in the associated metadata or manuscript.
The following is a list of data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list was current, as of Feb 21, 2022.