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==Data from publications== | ==Data from publications== | ||
- | The following is a list of data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list was current, as of January | + | The following is a list of data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list was current, as of January 15, 2017. |
#Lipton MS, Pasa-Tolic' L, Anderson GA, Anderson DJ, Auberry DL, Battista JR, Daly MJ, Fredrickson J, Hixson KK, Kostandarithes H, Masselon C, Markillie LM, Moore RJ, Romine MF, Shen Y, Stritmatter E, Tolic' N, Udseth HR, Venkateswaran A, Wong KK, Zhao R, Smith RD, (2002) "Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags." <i>Proc Natl Acad Sci U S A</i> <b>99</b>(17):11049–54; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/12177431 12177431]; doi: [https://dx.doi.org/10.1073/pnas.172170199 10.1073/pnas.172170199]; GPMDB: [http://gpmdb.org/data/keyword/12177431 498]. | #Lipton MS, Pasa-Tolic' L, Anderson GA, Anderson DJ, Auberry DL, Battista JR, Daly MJ, Fredrickson J, Hixson KK, Kostandarithes H, Masselon C, Markillie LM, Moore RJ, Romine MF, Shen Y, Stritmatter E, Tolic' N, Udseth HR, Venkateswaran A, Wong KK, Zhao R, Smith RD, (2002) "Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags." <i>Proc Natl Acad Sci U S A</i> <b>99</b>(17):11049–54; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/12177431 12177431]; doi: [https://dx.doi.org/10.1073/pnas.172170199 10.1073/pnas.172170199]; GPMDB: [http://gpmdb.org/data/keyword/12177431 498]. | ||
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#Osinalde N, Sanchez-Quiles V, Akimov V, Aloria K, Arizmendi JM, Blagoev B, Kratchmarova I, (2016) "Characterization of Receptor-Associated Protein Complex Assembly in Interleukin (IL)-2- and IL-15-Activated T-Cell Lines." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27463037 27463037]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00233 10.1021/acs.jproteome.6b00233]; GPMDB: [http://gpmdb.org/data/keyword/27463037 55]. | #Osinalde N, Sanchez-Quiles V, Akimov V, Aloria K, Arizmendi JM, Blagoev B, Kratchmarova I, (2016) "Characterization of Receptor-Associated Protein Complex Assembly in Interleukin (IL)-2- and IL-15-Activated T-Cell Lines." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27463037 27463037]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00233 10.1021/acs.jproteome.6b00233]; GPMDB: [http://gpmdb.org/data/keyword/27463037 55]. | ||
#Liu Z, Wang F, Chen J, Zhou Y, Zou H, (2016) "Modulating the selectivity of affinity absorbents to multi-phosphopeptides by a competitive substitution strategy." <i>J Chromatogr A</i> <b>1461</b>:35–41; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27470094 27470094]; doi: [https://dx.doi.org/10.1016/j.chroma.2016.07.042 10.1016/j.chroma.2016.07.042]; GPMDB: [http://gpmdb.org/data/keyword/27470094 9]. | #Liu Z, Wang F, Chen J, Zhou Y, Zou H, (2016) "Modulating the selectivity of affinity absorbents to multi-phosphopeptides by a competitive substitution strategy." <i>J Chromatogr A</i> <b>1461</b>:35–41; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27470094 27470094]; doi: [https://dx.doi.org/10.1016/j.chroma.2016.07.042 10.1016/j.chroma.2016.07.042]; GPMDB: [http://gpmdb.org/data/keyword/27470094 9]. | ||
+ | #Voisinne G, García-Blesa A, Chaoui K, Fiore F, Bergot E, Girard L, Malissen M, Burlet-Schiltz O, Gonzalez de Peredo A, Malissen B, Roncagalli R, (2016) "Co-recruitment analysis of the CBL and CBLB signalosomes in primary T cells identifies CD5 as a key regulator of TCR-induced ubiquitylation." <i>Mol Syst Biol</i> <b>12</b>(7):876; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27474268 27474268]; GPMDB: [http://gpmdb.org/data/keyword/27474268 178]. | ||
#Uyy E, Suica VI, Boteanu RM, Manda D, Baciu AE, Badiu C, Antohe F, (2016) "Endoplasmic Reticulum Chaperones Are Potential Active Factors in Thyroid Tumorigenesis." <i>J Proteome Res</i> <b>15</b>(9):3377–87; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27480176 27480176]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00567 10.1021/acs.jproteome.6b00567]; GPMDB: [http://gpmdb.org/data/keyword/27480176 100]. | #Uyy E, Suica VI, Boteanu RM, Manda D, Baciu AE, Badiu C, Antohe F, (2016) "Endoplasmic Reticulum Chaperones Are Potential Active Factors in Thyroid Tumorigenesis." <i>J Proteome Res</i> <b>15</b>(9):3377–87; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27480176 27480176]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00567 10.1021/acs.jproteome.6b00567]; GPMDB: [http://gpmdb.org/data/keyword/27480176 100]. | ||
#Söderholm S, Kainov DE, Öhman T, Denisova OV, Schepens B, Kulesskiy E, Imanishi SY, Corthals G, Hintsanen P, Aittokallio T, Saelens X, Matikainen S, Nyman TA, (2016) "Phosphoproteomics to Characterize Host Response During Influenza A Virus Infection of Human Macrophages." <i>Mol Cell Proteomics</i> <b>15</b>(10):3203–3219; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27486199 27486199]; doi: [https://dx.doi.org/10.1074/mcp.M116.057984 10.1074/mcp.M116.057984]; GPMDB: [http://gpmdb.org/data/keyword/27486199 20]. | #Söderholm S, Kainov DE, Öhman T, Denisova OV, Schepens B, Kulesskiy E, Imanishi SY, Corthals G, Hintsanen P, Aittokallio T, Saelens X, Matikainen S, Nyman TA, (2016) "Phosphoproteomics to Characterize Host Response During Influenza A Virus Infection of Human Macrophages." <i>Mol Cell Proteomics</i> <b>15</b>(10):3203–3219; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27486199 27486199]; doi: [https://dx.doi.org/10.1074/mcp.M116.057984 10.1074/mcp.M116.057984]; GPMDB: [http://gpmdb.org/data/keyword/27486199 20]. | ||
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#Häupl B, Ihling CH, Sinz A, (2016) "Protein Interaction Network of Human Protein Kinase D2 Revealed by Chemical Cross-Linking/Mass Spectrometry." <i>J Proteome Res</i> <b>15</b>(10):3686–3699; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27559607 27559607]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00513 10.1021/acs.jproteome.6b00513]; GPMDB: [http://gpmdb.org/data/keyword/27559607 81]. | #Häupl B, Ihling CH, Sinz A, (2016) "Protein Interaction Network of Human Protein Kinase D2 Revealed by Chemical Cross-Linking/Mass Spectrometry." <i>J Proteome Res</i> <b>15</b>(10):3686–3699; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27559607 27559607]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00513 10.1021/acs.jproteome.6b00513]; GPMDB: [http://gpmdb.org/data/keyword/27559607 81]. | ||
#Jiang Y, Lee J, Lee JH, Lee JW, Kim JH, Choi WH, Yoo YD, Cha-Molstad H, Kim BY, Kwon YT, Noh SA, Kim KP, Lee MJ, (2016) "The arginylation branch of the N-end rule pathway positively regulates cellular autophagic flux and clearance of proteotoxic proteins." <i>Autophagy</i> <b>12</b>(11):2197–2212; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27560450 27560450]; doi: [https://dx.doi.org/10.1080/15548627.2016.1222991 10.1080/15548627.2016.1222991]; GPMDB: [http://gpmdb.org/data/keyword/27560450 2]. | #Jiang Y, Lee J, Lee JH, Lee JW, Kim JH, Choi WH, Yoo YD, Cha-Molstad H, Kim BY, Kwon YT, Noh SA, Kim KP, Lee MJ, (2016) "The arginylation branch of the N-end rule pathway positively regulates cellular autophagic flux and clearance of proteotoxic proteins." <i>Autophagy</i> <b>12</b>(11):2197–2212; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27560450 27560450]; doi: [https://dx.doi.org/10.1080/15548627.2016.1222991 10.1080/15548627.2016.1222991]; GPMDB: [http://gpmdb.org/data/keyword/27560450 2]. | ||
+ | #Hesse AM, Dupierris V, Adam C, Court M, Barthe D, Emadali A, Masselon C, Ferro M, Bruley C, (2016) "hEIDI: An Intuitive Application Tool To Organize and Treat Large-Scale Proteomics Data." <i>J Proteome Res</i> <b>15</b>(10):3896–3903; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27560970 27560970]; doi: [https://dx.doi.org/10.1021/acs.jproteome.5b00853 10.1021/acs.jproteome.5b00853]; GPMDB: [http://gpmdb.org/data/keyword/27560970 142]. | ||
#Ross SH, Rollings C, Anderson KE, Hawkins PT, Stephens LR, Cantrell DA, (2016) "Phosphoproteomic Analyses of Interleukin 2 Signaling Reveal Integrated JAK Kinase-Dependent and -Independent Networks in CD8(+) T Cells." <i>Immunity</i> <b>45</b>(3):685–700; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27566939 27566939]; doi: [https://dx.doi.org/10.1016/j.immuni.2016.07.022 10.1016/j.immuni.2016.07.022]; GPMDB: [http://gpmdb.org/data/keyword/27566939 208]. | #Ross SH, Rollings C, Anderson KE, Hawkins PT, Stephens LR, Cantrell DA, (2016) "Phosphoproteomic Analyses of Interleukin 2 Signaling Reveal Integrated JAK Kinase-Dependent and -Independent Networks in CD8(+) T Cells." <i>Immunity</i> <b>45</b>(3):685–700; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27566939 27566939]; doi: [https://dx.doi.org/10.1016/j.immuni.2016.07.022 10.1016/j.immuni.2016.07.022]; GPMDB: [http://gpmdb.org/data/keyword/27566939 208]. | ||
#Larsen SC, Sylvestersen KB, Mund A, Lyon D, Mullari M, Madsen MV, Daniel JA, Jensen LJ, Nielsen ML, (2016) "Proteome-wide analysis of arginine monomethylation reveals widespread occurrence in human cells." <i>Sci Signal</i> <b>9</b>(443):rs9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27577262 27577262]; doi: [https://dx.doi.org/10.1126/scisignal.aaf7329 10.1126/scisignal.aaf7329]; GPMDB: [http://gpmdb.org/data/keyword/27577262 10]. | #Larsen SC, Sylvestersen KB, Mund A, Lyon D, Mullari M, Madsen MV, Daniel JA, Jensen LJ, Nielsen ML, (2016) "Proteome-wide analysis of arginine monomethylation reveals widespread occurrence in human cells." <i>Sci Signal</i> <b>9</b>(443):rs9; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27577262 27577262]; doi: [https://dx.doi.org/10.1126/scisignal.aaf7329 10.1126/scisignal.aaf7329]; GPMDB: [http://gpmdb.org/data/keyword/27577262 10]. | ||
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#Zammit CM, Weiland F, Brugger J, Wade B, Winderbaum LJ, Nies DH, Southam G, Hoffmann P, Reith F, (2016) "Proteomic responses to gold(iii)-toxicity in the bacterium Cupriavidus metallidurans CH34." <i>Metallomics</i> <b>8</b>(11):1204–1216; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27757465 27757465]; doi: [https://dx.doi.org/10.1039/c6mt00142d 10.1039/c6mt00142d]; GPMDB: [http://gpmdb.org/data/keyword/27757465 56]. | #Zammit CM, Weiland F, Brugger J, Wade B, Winderbaum LJ, Nies DH, Southam G, Hoffmann P, Reith F, (2016) "Proteomic responses to gold(iii)-toxicity in the bacterium Cupriavidus metallidurans CH34." <i>Metallomics</i> <b>8</b>(11):1204–1216; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27757465 27757465]; doi: [https://dx.doi.org/10.1039/c6mt00142d 10.1039/c6mt00142d]; GPMDB: [http://gpmdb.org/data/keyword/27757465 56]. | ||
#Sialana FJ, Gulyassy P, Májek P, Sjöstedt E, Kis V, Müller AC, Rudashevskaya EL, Mulder J, Bennett KL, Lubec G, (2016) "Mass spectrometric analysis of synaptosomal membrane preparations for the determination of brain receptors, transporters and channels." <i>Proteomics</i> <b>16</b>(22):2911–2920; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27759936 27759936]; doi: [https://dx.doi.org/10.1002/pmic.201600234 10.1002/pmic.201600234]; GPMDB: [http://gpmdb.org/data/keyword/27759936 86]. | #Sialana FJ, Gulyassy P, Májek P, Sjöstedt E, Kis V, Müller AC, Rudashevskaya EL, Mulder J, Bennett KL, Lubec G, (2016) "Mass spectrometric analysis of synaptosomal membrane preparations for the determination of brain receptors, transporters and channels." <i>Proteomics</i> <b>16</b>(22):2911–2920; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27759936 27759936]; doi: [https://dx.doi.org/10.1002/pmic.201600234 10.1002/pmic.201600234]; GPMDB: [http://gpmdb.org/data/keyword/27759936 86]. | ||
+ | #Duteil D, Tosic M, Lausecker F, Nenseth HZ, Müller JM, Urban S, Willmann D, Petroll K, Messaddeq N, Arrigoni L, Manke T, Kornfeld JW, Brüning JC, Zagoriy V, Meret M, Dengjel J, Kanouni T, Schüle R, (2016) "Lsd1 Ablation Triggers Metabolic Reprogramming of Brown Adipose Tissue." <i>Cell Rep</i> <b>17</b>(4):1008–1021; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27760309 27760309]; doi: [https://dx.doi.org/10.1016/j.celrep.2016.09.053 10.1016/j.celrep.2016.09.053]; GPMDB: [http://gpmdb.org/data/keyword/27760309 142]. | ||
#Sarvaiya HA, Lazar IM, (2016) "Insulin stimulated MCF7 breast cancer cells: Proteome dataset." <i>Data Brief</i> <b>9</b>:579–584; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27761513 27761513]; doi: [https://dx.doi.org/10.1016/j.dib.2016.09.025 10.1016/j.dib.2016.09.025]; GPMDB: [http://gpmdb.org/data/keyword/27761513 1]. | #Sarvaiya HA, Lazar IM, (2016) "Insulin stimulated MCF7 breast cancer cells: Proteome dataset." <i>Data Brief</i> <b>9</b>:579–584; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27761513 27761513]; doi: [https://dx.doi.org/10.1016/j.dib.2016.09.025 10.1016/j.dib.2016.09.025]; GPMDB: [http://gpmdb.org/data/keyword/27761513 1]. | ||
- | #Richter E, Harms M, Ventz K, Nölker R, Fraunholz MJ, Mostertz J, Hochgräfe F, (2016) "Quantitative Proteomics Reveals the Dynamics of Protein Phosphorylation in Human Bronchial Epithelial Cells during Internalization, Phagosomal Escape, and Intracellular Replication of Staphylococcus aureus." <i>J Proteome Res</i> <b>15</b>(12):4369–4386; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27762562 27762562]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00421 10.1021/acs.jproteome.6b00421]; GPMDB: [http://gpmdb.org/data/keyword/27762562 | + | #Richter E, Harms M, Ventz K, Nölker R, Fraunholz MJ, Mostertz J, Hochgräfe F, (2016) "Quantitative Proteomics Reveals the Dynamics of Protein Phosphorylation in Human Bronchial Epithelial Cells during Internalization, Phagosomal Escape, and Intracellular Replication of Staphylococcus aureus." <i>J Proteome Res</i> <b>15</b>(12):4369–4386; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27762562 27762562]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00421 10.1021/acs.jproteome.6b00421]; GPMDB: [http://gpmdb.org/data/keyword/27762562 68]. |
#Assoni A, Coatti G, Valadares MC, Beccari M, Gomes J, Pelatti M, Mitne-Neto M, Carvalho VM, Zatz M, (2016) "Different Donors Mesenchymal Stromal Cells Secretomes Reveal Heterogeneous Profile of Relevance for Therapeutic Use." <i>Stem Cells Dev</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27762666 27762666]; doi: [https://dx.doi.org/10.1089/scd.2016.0218 10.1089/scd.2016.0218]; GPMDB: [http://gpmdb.org/data/keyword/27762666 48]. | #Assoni A, Coatti G, Valadares MC, Beccari M, Gomes J, Pelatti M, Mitne-Neto M, Carvalho VM, Zatz M, (2016) "Different Donors Mesenchymal Stromal Cells Secretomes Reveal Heterogeneous Profile of Relevance for Therapeutic Use." <i>Stem Cells Dev</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27762666 27762666]; doi: [https://dx.doi.org/10.1089/scd.2016.0218 10.1089/scd.2016.0218]; GPMDB: [http://gpmdb.org/data/keyword/27762666 48]. | ||
#Peng J, Cao J, Ng FM, Hill J, (2016) "Pseudomonas aeruginosa develops Ciprofloxacin resistance from low to high level with distinctive proteome changes." <i>J Proteomics</i> <b>152</b>:75–87; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27771372 27771372]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.10.005 10.1016/j.jprot.2016.10.005]; GPMDB: [http://gpmdb.org/data/keyword/27771372 25]. | #Peng J, Cao J, Ng FM, Hill J, (2016) "Pseudomonas aeruginosa develops Ciprofloxacin resistance from low to high level with distinctive proteome changes." <i>J Proteomics</i> <b>152</b>:75–87; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27771372 27771372]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.10.005 10.1016/j.jprot.2016.10.005]; GPMDB: [http://gpmdb.org/data/keyword/27771372 25]. | ||
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#Lundquist PK, Mantegazza O, Stefanski A, Stühler K, Weber AP, (2016) "Surveying the Oligomeric State of Arabidopsis thaliana Chloroplasts." <i>Mol Plant</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27794502 27794502]; doi: [https://dx.doi.org/10.1016/j.molp.2016.10.011 10.1016/j.molp.2016.10.011]; GPMDB: [http://gpmdb.org/data/keyword/27794502 42]. | #Lundquist PK, Mantegazza O, Stefanski A, Stühler K, Weber AP, (2016) "Surveying the Oligomeric State of Arabidopsis thaliana Chloroplasts." <i>Mol Plant</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27794502 27794502]; doi: [https://dx.doi.org/10.1016/j.molp.2016.10.011 10.1016/j.molp.2016.10.011]; GPMDB: [http://gpmdb.org/data/keyword/27794502 42]. | ||
#Fournier M, Orpinell M, Grauffel C, Scheer E, Garnier JM, Ye T, Chavant V, Joint M, Esashi F, Dejaegere A, Gönczy P, Tora L, (2016) "KAT2A/KAT2B-targeted acetylome reveals a role for PLK4 acetylation in preventing centrosome amplification." <i>Nat Commun</i> <b>7</b>:13227; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27796307 27796307]; doi: [https://dx.doi.org/10.1038/ncomms13227 10.1038/ncomms13227]; GPMDB: [http://gpmdb.org/data/keyword/27796307 114]. | #Fournier M, Orpinell M, Grauffel C, Scheer E, Garnier JM, Ye T, Chavant V, Joint M, Esashi F, Dejaegere A, Gönczy P, Tora L, (2016) "KAT2A/KAT2B-targeted acetylome reveals a role for PLK4 acetylation in preventing centrosome amplification." <i>Nat Commun</i> <b>7</b>:13227; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27796307 27796307]; doi: [https://dx.doi.org/10.1038/ncomms13227 10.1038/ncomms13227]; GPMDB: [http://gpmdb.org/data/keyword/27796307 114]. | ||
+ | #Danda R, Ganapathy K, Sathe G, Madugundu AK, Ramachandran S, Krishnan UM, Khetan V, Rishi P, Keshava Prasad TS, Pandey A, Krishnakumar S, Gowda H, Elchuri SV, (2016) "Proteomic profiling of retinoblastoma by high resolution mass spectrometry." <i>Clin Proteomics</i> <b>13</b>:29; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27799869 27799869]; doi: [https://dx.doi.org/10.1186/s12014-016-9128-7 10.1186/s12014-016-9128-7]; GPMDB: [http://gpmdb.org/data/keyword/27799869 1]. | ||
+ | #Fahrmann JF, Grapov D, Phinney BS, Stroble C, DeFelice BC, Rom W, Gandara DR, Zhang Y, Fiehn O, Pass H, Miyamoto S, (2016) "Proteomic profiling of lung adenocarcinoma indicates heightened DNA repair, antioxidant mechanisms and identifies LASP1 as a potential negative predictor of survival." <i>Clin Proteomics</i> <b>13</b>:31; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27799870 27799870]; doi: [https://dx.doi.org/10.1186/s12014-016-9132-y 10.1186/s12014-016-9132-y]; GPMDB: [http://gpmdb.org/data/keyword/27799870 234]. | ||
#Karunakaran KP, Yu H, Jiang X, Chan Q, Goldberg MF, Jenkins MK, Foster LJ, Brunham RC, (2017) "Identification of MHC-Bound Peptides from Dendritic Cells Infected with Salmonella enterica Strain SL1344: Implications for a Nontyphoidal Salmonella Vaccine." <i>J Proteome Res</i> <b>16</b>(1):298–306; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27802388 27802388]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00926 10.1021/acs.jproteome.6b00926]; GPMDB: [http://gpmdb.org/data/keyword/27802388 3]. | #Karunakaran KP, Yu H, Jiang X, Chan Q, Goldberg MF, Jenkins MK, Foster LJ, Brunham RC, (2017) "Identification of MHC-Bound Peptides from Dendritic Cells Infected with Salmonella enterica Strain SL1344: Implications for a Nontyphoidal Salmonella Vaccine." <i>J Proteome Res</i> <b>16</b>(1):298–306; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27802388 27802388]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00926 10.1021/acs.jproteome.6b00926]; GPMDB: [http://gpmdb.org/data/keyword/27802388 3]. | ||
+ | #Borziak K, Álvarez-Fernández A, L Karr T, Pizzari T, Dorus S, (2016) "The Seminal fluid proteome of the polyandrous Red junglefowl offers insights into the molecular basis of fertility, reproductive ageing and domestication." <i>Sci Rep</i> <b>6</b>:35864; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27804984 27804984]; doi: [https://dx.doi.org/10.1038/srep35864 10.1038/srep35864]; GPMDB: [http://gpmdb.org/data/keyword/27804984 144]. | ||
#Roberts JH, Liu F, Karnuta JM, Fitzgerald MC, (2016) "Discovery of Age-Related Protein Folding Stability Differences in the Mouse Brain Proteome." <i>J Proteome Res</i> <b>15</b>(12):4731–4741; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27806573 27806573]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00927 10.1021/acs.jproteome.6b00927]; GPMDB: [http://gpmdb.org/data/keyword/27806573 48]. | #Roberts JH, Liu F, Karnuta JM, Fitzgerald MC, (2016) "Discovery of Age-Related Protein Folding Stability Differences in the Mouse Brain Proteome." <i>J Proteome Res</i> <b>15</b>(12):4731–4741; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27806573 27806573]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00927 10.1021/acs.jproteome.6b00927]; GPMDB: [http://gpmdb.org/data/keyword/27806573 48]. | ||
#Mardakheh FK, Self A, Marshall CJ, (2016) "RHO binding to FAM65A regulates Golgi reorientation during cell migration." <i>J Cell Sci</i> <b>129</b>(24):4466–4479; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27807006 27807006]; doi: [https://dx.doi.org/10.1242/jcs.198614 10.1242/jcs.198614]; GPMDB: [http://gpmdb.org/data/keyword/27807006 18]. | #Mardakheh FK, Self A, Marshall CJ, (2016) "RHO binding to FAM65A regulates Golgi reorientation during cell migration." <i>J Cell Sci</i> <b>129</b>(24):4466–4479; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27807006 27807006]; doi: [https://dx.doi.org/10.1242/jcs.198614 10.1242/jcs.198614]; GPMDB: [http://gpmdb.org/data/keyword/27807006 18]. | ||
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#Warpman Berglund U, Sanjiv K, Gad H, Kalderén C, Koolmeister T, Pham T, Gokturk C, Jafari R, Maddalo G, Seashore-Ludlow B, Chernobrovkin A, Manoilov A, Pateras IS, Rasti A, Jemth AS, Almlöf I, Loseva O, Visnes T, Einarsdottir BO, Gaugaz FZ, Saleh A, Platzack B, Wallner OA, Vallin KS, Henriksson M, Wakchaure P, Borhade S, Herr P, Kallberg Y, Baranczewski P, Homan EJ, Wiita E, Nagpal V, Meijer T, Schipper N, Rudd SG, Bräutigam L, Lindqvist A, Filppula A, Lee TC, Artursson P, Nilsson JA, Gorgoulis VG, Lehtiö J, Zubarev RA, Scobie M, Helleday T, (2016) "Validation and development of MTH1 inhibitors for treatment of cancer." <i>Ann Oncol</i> <b>27</b>(12):2275–2283; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27827301 27827301]; doi: [https://dx.doi.org/10.1093/annonc/mdw429 10.1093/annonc/mdw429]; GPMDB: [http://gpmdb.org/data/keyword/27827301 4]. | #Warpman Berglund U, Sanjiv K, Gad H, Kalderén C, Koolmeister T, Pham T, Gokturk C, Jafari R, Maddalo G, Seashore-Ludlow B, Chernobrovkin A, Manoilov A, Pateras IS, Rasti A, Jemth AS, Almlöf I, Loseva O, Visnes T, Einarsdottir BO, Gaugaz FZ, Saleh A, Platzack B, Wallner OA, Vallin KS, Henriksson M, Wakchaure P, Borhade S, Herr P, Kallberg Y, Baranczewski P, Homan EJ, Wiita E, Nagpal V, Meijer T, Schipper N, Rudd SG, Bräutigam L, Lindqvist A, Filppula A, Lee TC, Artursson P, Nilsson JA, Gorgoulis VG, Lehtiö J, Zubarev RA, Scobie M, Helleday T, (2016) "Validation and development of MTH1 inhibitors for treatment of cancer." <i>Ann Oncol</i> <b>27</b>(12):2275–2283; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27827301 27827301]; doi: [https://dx.doi.org/10.1093/annonc/mdw429 10.1093/annonc/mdw429]; GPMDB: [http://gpmdb.org/data/keyword/27827301 4]. | ||
#Liu Y, Sellegounder D, Sun J, (2016) "Neuronal GPCR OCTR-1 regulates innate immunity by controlling protein synthesis in Caenorhabditis elegans." <i>Sci Rep</i> <b>6</b>:36832; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27833098 27833098]; doi: [https://dx.doi.org/10.1038/srep36832 10.1038/srep36832]; GPMDB: [http://gpmdb.org/data/keyword/27833098 20]. | #Liu Y, Sellegounder D, Sun J, (2016) "Neuronal GPCR OCTR-1 regulates innate immunity by controlling protein synthesis in Caenorhabditis elegans." <i>Sci Rep</i> <b>6</b>:36832; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27833098 27833098]; doi: [https://dx.doi.org/10.1038/srep36832 10.1038/srep36832]; GPMDB: [http://gpmdb.org/data/keyword/27833098 20]. | ||
- | #Doll S, Urisman A, Oses-Prieto JA, Arnott D, Burlingame AL, (2016) "Quantitative proteomics reveals fundamental regulatory differences in oncogenic HRAS and IDH1 driven astrocytoma." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27834733 27834733]; doi: [https://dx.doi.org/10.1074/mcp.M116.063883 10.1074/mcp.M116.063883]; GPMDB: [http://gpmdb.org/data/keyword/27834733 | + | #Doll S, Urisman A, Oses-Prieto JA, Arnott D, Burlingame AL, (2016) "Quantitative proteomics reveals fundamental regulatory differences in oncogenic HRAS and IDH1 driven astrocytoma." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27834733 27834733]; doi: [https://dx.doi.org/10.1074/mcp.M116.063883 10.1074/mcp.M116.063883]; GPMDB: [http://gpmdb.org/data/keyword/27834733 14]. |
#Valdés A, García-Cañas V, Artemenko KA, Simó C, Bergquist J, Cifuentes A, (2016) "Nano-liquid chromatography-orbitrap MS -based quantitative proteomics reveals differences between the mechanisms of action of carnosic acid and carnosol in colon cancer cells." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27834734 27834734]; doi: [https://dx.doi.org/10.1074/mcp.M116.061481 10.1074/mcp.M116.061481]; GPMDB: [http://gpmdb.org/data/keyword/27834734 54]. | #Valdés A, García-Cañas V, Artemenko KA, Simó C, Bergquist J, Cifuentes A, (2016) "Nano-liquid chromatography-orbitrap MS -based quantitative proteomics reveals differences between the mechanisms of action of carnosic acid and carnosol in colon cancer cells." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27834734 27834734]; doi: [https://dx.doi.org/10.1074/mcp.M116.061481 10.1074/mcp.M116.061481]; GPMDB: [http://gpmdb.org/data/keyword/27834734 54]. | ||
#Plum S, Steinbach S, Attems J, Keers S, Riederer P, Gerlach M, May C, Marcus K, (2016) "Proteomic characterization of neuromelanin granules isolated from human substantia nigra by laser-microdissection." <i>Sci Rep</i> <b>6</b>:37139; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27841354 27841354]; doi: [https://dx.doi.org/10.1038/srep37139 10.1038/srep37139]; GPMDB: [http://gpmdb.org/data/keyword/27841354 9]. | #Plum S, Steinbach S, Attems J, Keers S, Riederer P, Gerlach M, May C, Marcus K, (2016) "Proteomic characterization of neuromelanin granules isolated from human substantia nigra by laser-microdissection." <i>Sci Rep</i> <b>6</b>:37139; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27841354 27841354]; doi: [https://dx.doi.org/10.1038/srep37139 10.1038/srep37139]; GPMDB: [http://gpmdb.org/data/keyword/27841354 9]. | ||
#Eisenberg T, Abdellatif M, Schroeder S, Primessnig U, Stekovic S, Pendl T, Harger A, Schipke J, Zimmermann A, Schmidt A, Tong M, Ruckenstuhl C, Dammbrueck C, Gross AS, Herbst V, Magnes C, Trausinger G, Narath S, Meinitzer A, Hu Z, Kirsch A, Eller K, Carmona-Gutierrez D, Büttner S, Pietrocola F, Knittelfelder O, Schrepfer E, Rockenfeller P, Simonini C, Rahn A, Horsch M, Moreth K, Beckers J, Fuchs H, Gailus-Durner V, Neff F, Janik D, Rathkolb B, Rozman J, de Angelis MH, Moustafa T, Haemmerle G, Mayr M, Willeit P, von Frieling-Salewsky M, Pieske B, Scorrano L, Pieber T, Pechlaner R, Willeit J, Sigrist SJ, Linke WA, Mühlfeld C, Sadoshima J, Dengjel J, Kiechl S, Kroemer G, Sedej S, Madeo F, (2016) "Cardioprotection and lifespan extension by the natural polyamine spermidine." <i>Nat Med</i> <b>22</b>(12):1428–1438; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27841876 27841876]; doi: [https://dx.doi.org/10.1038/nm.4222 10.1038/nm.4222]; GPMDB: [http://gpmdb.org/data/keyword/27841876 9]. | #Eisenberg T, Abdellatif M, Schroeder S, Primessnig U, Stekovic S, Pendl T, Harger A, Schipke J, Zimmermann A, Schmidt A, Tong M, Ruckenstuhl C, Dammbrueck C, Gross AS, Herbst V, Magnes C, Trausinger G, Narath S, Meinitzer A, Hu Z, Kirsch A, Eller K, Carmona-Gutierrez D, Büttner S, Pietrocola F, Knittelfelder O, Schrepfer E, Rockenfeller P, Simonini C, Rahn A, Horsch M, Moreth K, Beckers J, Fuchs H, Gailus-Durner V, Neff F, Janik D, Rathkolb B, Rozman J, de Angelis MH, Moustafa T, Haemmerle G, Mayr M, Willeit P, von Frieling-Salewsky M, Pieske B, Scorrano L, Pieber T, Pechlaner R, Willeit J, Sigrist SJ, Linke WA, Mühlfeld C, Sadoshima J, Dengjel J, Kiechl S, Kroemer G, Sedej S, Madeo F, (2016) "Cardioprotection and lifespan extension by the natural polyamine spermidine." <i>Nat Med</i> <b>22</b>(12):1428–1438; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27841876 27841876]; doi: [https://dx.doi.org/10.1038/nm.4222 10.1038/nm.4222]; GPMDB: [http://gpmdb.org/data/keyword/27841876 9]. | ||
+ | #Villoria MT, Ramos F, Dueñas E, Faull P, Cutillas PR, Clemente-Blanco A, (2017) "Stabilization of the metaphase spindle by Cdc14 is required for recombinational DNA repair." <i>EMBO J</i> <b>36</b>(1):79–101; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27852625 27852625]; doi: [https://dx.doi.org/10.15252/embj.201593540 10.15252/embj.201593540]; GPMDB: [http://gpmdb.org/data/keyword/27852625 12]. | ||
#Schmitges FW, Radovani E, Najafabadi HS, Barazandeh M, Campitelli LF, Yin Y, Jolma A, Zhong G, Guo H, Kanagalingam T, Dai WF, Taipale J, Emili A, Greenblatt JF, Hughes TR, (2016) "Multiparameter functional diversity of human C2H2 zinc finger proteins." <i>Genome Res</i> <b>26</b>(12):1742–1752; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27852650 27852650]; doi: [https://dx.doi.org/10.1101/gr.209643.116 10.1101/gr.209643.116]; GPMDB: [http://gpmdb.org/data/keyword/27852650 224]. | #Schmitges FW, Radovani E, Najafabadi HS, Barazandeh M, Campitelli LF, Yin Y, Jolma A, Zhong G, Guo H, Kanagalingam T, Dai WF, Taipale J, Emili A, Greenblatt JF, Hughes TR, (2016) "Multiparameter functional diversity of human C2H2 zinc finger proteins." <i>Genome Res</i> <b>26</b>(12):1742–1752; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27852650 27852650]; doi: [https://dx.doi.org/10.1101/gr.209643.116 10.1101/gr.209643.116]; GPMDB: [http://gpmdb.org/data/keyword/27852650 224]. | ||
#Beringer M, Pisano P, Di Carlo V, Blanco E, Chammas P, Vizán P, Gutiérrez A, Aranda S, Payer B, Wierer M, Di Croce L, (2016) "EPOP Functionally Links Elongin and Polycomb in Pluripotent Stem Cells." <i>Mol Cell</i> <b>64</b>(4):645–658; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27863225 27863225]; doi: [https://dx.doi.org/10.1016/j.molcel.2016.10.018 10.1016/j.molcel.2016.10.018]; GPMDB: [http://gpmdb.org/data/keyword/27863225 12]. | #Beringer M, Pisano P, Di Carlo V, Blanco E, Chammas P, Vizán P, Gutiérrez A, Aranda S, Payer B, Wierer M, Di Croce L, (2016) "EPOP Functionally Links Elongin and Polycomb in Pluripotent Stem Cells." <i>Mol Cell</i> <b>64</b>(4):645–658; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27863225 27863225]; doi: [https://dx.doi.org/10.1016/j.molcel.2016.10.018 10.1016/j.molcel.2016.10.018]; GPMDB: [http://gpmdb.org/data/keyword/27863225 12]. | ||
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#Dauden MI, Kosinski J, Kolaj-Robin O, Desfosses A, Ori A, Faux C, Hoffmann NA, Onuma OF, Breunig KD, Beck M, Sachse C, Séraphin B, Glatt S, Müller CW, (2016) "Architecture of the yeast Elongator complex." <i>EMBO Rep</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27974378 27974378]; doi: [https://dx.doi.org/10.15252/embr.201643353 10.15252/embr.201643353]; GPMDB: [http://gpmdb.org/data/keyword/27974378 44]. | #Dauden MI, Kosinski J, Kolaj-Robin O, Desfosses A, Ori A, Faux C, Hoffmann NA, Onuma OF, Breunig KD, Beck M, Sachse C, Séraphin B, Glatt S, Müller CW, (2016) "Architecture of the yeast Elongator complex." <i>EMBO Rep</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27974378 27974378]; doi: [https://dx.doi.org/10.15252/embr.201643353 10.15252/embr.201643353]; GPMDB: [http://gpmdb.org/data/keyword/27974378 44]. | ||
#Herfs M, Longuespée R, Quick CM, Roncarati P, Suarez-Carmona M, Hubert P, Lebeau A, Bruyere D, Mazzucchelli G, Smargiasso N, Baiwir D, Lai K, Dunn A, Obregon F, Yang EJ, De Pauw E, Crum CP, Delvenne P, (2016) "Proteomic signatures reveal a dualistic and clinically relevant classification of anal canal carcinoma." <i>J Pathol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27976366 27976366]; doi: [https://dx.doi.org/10.1002/path.4858 10.1002/path.4858]; GPMDB: [http://gpmdb.org/data/keyword/27976366 60]. | #Herfs M, Longuespée R, Quick CM, Roncarati P, Suarez-Carmona M, Hubert P, Lebeau A, Bruyere D, Mazzucchelli G, Smargiasso N, Baiwir D, Lai K, Dunn A, Obregon F, Yang EJ, De Pauw E, Crum CP, Delvenne P, (2016) "Proteomic signatures reveal a dualistic and clinically relevant classification of anal canal carcinoma." <i>J Pathol</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27976366 27976366]; doi: [https://dx.doi.org/10.1002/path.4858 10.1002/path.4858]; GPMDB: [http://gpmdb.org/data/keyword/27976366 60]. | ||
+ | #Schunter AJ, Yue X, Hummon AB, (2016) "Phosphoproteomics of colon cancer metastasis: comparative mass spectrometric analysis of the isogenic primary and metastatic cell lines SW480 and SW620." <i>Anal Bioanal Chem</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27987026 27987026]; doi: [https://dx.doi.org/10.1007/s00216-016-0125-5 10.1007/s00216-016-0125-5]; GPMDB: [http://gpmdb.org/data/keyword/27987026 9]. | ||
#Choi M, Eren-Dogu ZF, Colangelo CM, Cottrell JS, Hoopmann MR, Kapp EA, Kim S, Lam H, Neubert TA, Palmblad M, Phinney BS, Weintraub ST, MacLean B, Vitek O, (2016) "ABRF Proteome Informatics Research Group (iPRG) 2015 Study: Detection of differentially abundant proteins in label-free quantitative LC-MS/MS experiments." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27990823 27990823]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00881 10.1021/acs.jproteome.6b00881]; GPMDB: [http://gpmdb.org/data/keyword/27990823 12]. | #Choi M, Eren-Dogu ZF, Colangelo CM, Cottrell JS, Hoopmann MR, Kapp EA, Kim S, Lam H, Neubert TA, Palmblad M, Phinney BS, Weintraub ST, MacLean B, Vitek O, (2016) "ABRF Proteome Informatics Research Group (iPRG) 2015 Study: Detection of differentially abundant proteins in label-free quantitative LC-MS/MS experiments." <i>J Proteome Res</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27990823 27990823]; doi: [https://dx.doi.org/10.1021/acs.jproteome.6b00881 10.1021/acs.jproteome.6b00881]; GPMDB: [http://gpmdb.org/data/keyword/27990823 12]. | ||
- | #Geyer PE, Wewer Albrechtsen NJ, Tyanova S, Grassl N, Iepsen EW, Lundgren J, Madsbad S, Holst JJ, Torekov SS, Mann M, (2016) "Proteomics reveals the effects of sustained weight loss on the human plasma proteome." <i>Mol Syst Biol</i> <b>12</b>(12):901; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28007936 28007936]; GPMDB: [http://gpmdb.org/data/keyword/28007936 | + | #Bertile F, Fouillen L, Wasselin T, Maes P, Le Maho Y, Van Dorsselaer A, Raclot T, (2016) "The Safety Limits Of An Extended Fast: Lessons from a Non-Model Organism." <i>Sci Rep</i> <b>6</b>:39008; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/27991520 27991520]; doi: [https://dx.doi.org/10.1038/srep39008 10.1038/srep39008]; GPMDB: [http://gpmdb.org/data/keyword/27991520 194]. |
+ | #Geyer PE, Wewer Albrechtsen NJ, Tyanova S, Grassl N, Iepsen EW, Lundgren J, Madsbad S, Holst JJ, Torekov SS, Mann M, (2016) "Proteomics reveals the effects of sustained weight loss on the human plasma proteome." <i>Mol Syst Biol</i> <b>12</b>(12):901; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28007936 28007936]; GPMDB: [http://gpmdb.org/data/keyword/28007936 1145]. | ||
+ | #Reimann L, Wiese H, Leber Y, Schwäble AN, Fricke AL, Rohland A, Knapp B, Peikert CD, Drepper F, van der Ven PF, Radziwill G, Fürst DO, Warscheid B, (2016) "Myofibrillar Z-discs are a protein phosphorylation hot spot with PKC α modulating protein dynamics." <i>Mol Cell Proteomics</i>; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28028127 28028127]; doi: [https://dx.doi.org/10.1074/mcp.M116.065425 10.1074/mcp.M116.065425]; GPMDB: [http://gpmdb.org/data/keyword/28028127 200]. | ||
+ | #Chen J, Zheng Q, Hammers CM, Ellebrecht CT, Mukherjee EM, Tang HY, Lin C, Yuan H, Pan M, Langenhan J, Komorowski L, Siegel DL, Payne AS, Stanley JR, (2017) "Proteomic Analysis of Pemphigus Autoantibodies Indicates a Larger, More Diverse, and More Dynamic Repertoire than Determined by B Cell Genetics." <i>Cell Rep</i> <b>18</b>(1):237–247; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28052253 28052253]; doi: [https://dx.doi.org/10.1016/j.celrep.2016.12.013 10.1016/j.celrep.2016.12.013]; GPMDB: [http://gpmdb.org/data/keyword/28052253 128]. | ||
+ | #Degroote RL, Uhl PB, Amann B, Krackhardt AM, Ueffing M, Hauck SM, Deeg CA, (2017) "Formin like 1 expression is increased on CD4+ T lymphocytes in spontaneous autoimmune uveitis." <i>J Proteomics</i> <b>154</b>:102–108; PMID: [http://www.ncbi.nlm.nih.gov/pubmed/28057602 28057602]; doi: [https://dx.doi.org/10.1016/j.jprot.2016.12.015 10.1016/j.jprot.2016.12.015]; GPMDB: [http://gpmdb.org/data/keyword/28057602 6]. |
GPMDB was originally constructed to serve as a reference work for all publicly available proteomics generated using tandem mass spectrometry. Public data is downloaded and reanalyzed using the current version of X! Tandem. The result files generated by the reanalysis and the relevant metadata are imported into the database and made available through the associated web site, ftp site and REST interfaces.
Contents |
The following public data repositories are checked daily for new suitable raw data for reanalysis:
Data made available from specific large projects, such as CPTAC or the Human Proteome Atlas, are also included when they are made available. Every effort is made so that reanalyzed results from all data sources are made available within 48 hours of their being released. In addition, data from lab web sites, ftp sites and direct contributions through the GPM sites made available to researchers are imported into GPMDB as part of a daily incremental update process.
GPMDB has been in operation since Jan. 1, 2004. Several large data source repositories have come into existence and ceased activity in the period since that time. All of the data from those repositories (e.g., TRANCHE, Peptidome) were reanalyzed and stored in GPMDB and they are still available even though the source repository sites are no longer active.
Simply because data is made available does not mean that it will be included in GPMDB. The data must pass our internal automated quality control tests for its initial acceptance and it may be rejected subsequently because of either quality or originality concerns.
The following is a list of data sets with associated PubMed IDs that have supplied data to the GPMDB Project through the data sources mentioned above. The list was current, as of January 15, 2017.