This document is a request for comment on a proposed new REST interface for GPMDB. The RFC process began on June 11, 2012 and will end on September 10, 2012.
The purpose of the RFC is to define a straightforward REST (REpresentational State Transfer) interface to commonly required information based on the data in GPMDB. This interface will provide simple, non-SQL methods to extract this information and make it available over the Internet to anyone wishing to use it as part of an network-aware application.
The following statements refer to all methods and description given below:
input: none return: a text description of this interface
input: none return: the version number of the SOAP interface
input: accession number for the protein of interest return: the log10(E) for the best observation of ACCESSION
input: accession number for the protein of interest return: the total number of observations of ACCESSION
input: accession number for the protein of interest return: the log10(E) for the best observation of ACCESSION
input: accession number for the protein of interest peptide sequence in single letter code return: a comma-separated tuple of observations SEQUENCE in ACCESSION, by parent ion charge state
input: accession number for the protein of interest return: a comma-separated tuple of all peptides observed for ACCESSION
input: accession number for the protein of interest return: a comma-separated tuple of the number of peptide observations of ACCESSION, by parent ion charge state.
input: accession number for the protein of interest return: number of observations of peptides associated with the reference protein
input: accession number for the protein of interest return: the single-letter amino acid sequence of the referenced protein
Any one interested in making suggestions or commenting on the ideas in this document should send them by email to Ron Beavis, rbeavis@thegpm.org.
Reference name | Revision date | Document status | Stable URL |
---|---|---|---|
GPM-2012.06.11 | 2012.06.11 | draft specification | n/a to draft |