m (Protected "Green white peptide algorithm" ([edit=sysop] (indefinite) [move=sysop] (indefinite))) |
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This algorithm is used to generate diagrams in GPM display pages that indicate the peptides which are unlikely to be observed in a proteomics experiment. A "green" peptide is unlikely to be observed and all other peptides are "white". | This algorithm is used to generate diagrams in GPM display pages that indicate the peptides which are unlikely to be observed in a proteomics experiment. A "green" peptide is unlikely to be observed and all other peptides are "white". | ||
- | ==Algorithm== | + | ==Green/White Peptide Algorithm== |
For each peptide sequence, if any of the following rules are met, the peptide is rated "green": | For each peptide sequence, if any of the following rules are met, the peptide is rated "green": |
This algorithm is used to generate diagrams in GPM display pages that indicate the peptides which are unlikely to be observed in a proteomics experiment. A "green" peptide is unlikely to be observed and all other peptides are "white".
For each peptide sequence, if any of the following rules are met, the peptide is rated "green":
All other peptides are "white".
The Perl code that performs this assessment in GPM is the subroutine "unlikely", found in "/thegpm-cgi/common.pl".