Main Page

From TheGPMWiki
(Difference between revisions)
Jump to: navigation, search
Line 3: Line 3:
|-
|-
! align="center" | Welcome to the GPMDB wiki site.
! align="center" | Welcome to the GPMDB wiki site.
-
! align="center" | GPMDB contents (2016.7.17)
+
! align="center" | GPMDB contents (2016.9.29)
|-
|-
Line 20: Line 20:
|-  
|-  
| align="right" | models =  
| align="right" | models =  
-
| 380,451
+
| 391,080
|-  
|-  
| align="right" | proteins =  
| align="right" | proteins =  
-
| 444,895,080
+
| 476,066,019
|-  
|-  
| align="right" | distinct proteins =  
| align="right" | distinct proteins =  
-
| 2,848,734
+
| 2,948,482
|-  
|-  
| align="right" | protein redundancy =  
| align="right" | protein redundancy =  
-
|  156.2 ×
+
|  161.5 ×
|-  
|-  
| align="right" | peptides =  
| align="right" | peptides =  
-
| 4,096,319,990
+
| 4,397,776,578
|-  
|-  
| align="right" | distinct peptides =  
| align="right" | distinct peptides =  
-
| 13,414,541
+
| 14,442,605
|-  
|-  
| align="right" | peptide redundancy =  
| align="right" | peptide redundancy =  
Line 41: Line 41:
|-  
|-  
| align="right" | AA residues =  
| align="right" | AA residues =  
-
| 57,348,479,860
+
| 61,568,872,092
|}
|}
|}
|}

Revision as of 01:18, 29 September 2016

Welcome to the GPMDB wiki site. GPMDB contents (2016.9.29)

The Global Proteome Machine Database was constructed to utilize the information obtained by GPM servers to aid in the difficult process of validating peptide MS/MS spectra as well as protein coverage patterns. This database has been integrated into GPM server pages, allowing users to quickly compare their experimental results with the best results that have been previously observed by other scientists.

The GPM is a user interface that allows scientists to run protein identifications searches and interpret the results of the searches. It currently supports three different search engines:

  1. X! Tandem - a conventional protein identification search engine;
  2. X! P3 - a search engine that uses proteotypic peptides; and
  3. X! Hunter - an annotated spectrum library search engine.

This wiki has been set up to allow the users of the GPM to annotate results sets stored in the GPMDB system. In order to add information, please create a user account by following the link in the top right corner.

models = 391,080
proteins = 476,066,019
distinct proteins = 2,948,482
protein redundancy = 161.5 ×
peptides = 4,397,776,578
distinct peptides = 14,442,605
peptide redundancy = 305.4 ×
AA residues = 61,568,872,092

Some of the most popular topics on this site are as follows:

  1. GPMDB Data Sources: where we get data from and a list of papers associated with that data;
  2. GPMDB REST API: annotation and instructions on how to use the GPMDB REST API;
  3. g2pDB REST API: annotation and instructions on how to use the g2pDB REST API;
  4. PTM annotation: a comprehensive reference to how we annotate PTMs;
  5. Amino acids: a list of amino acids found in proteins; and
  6. GPMDB evidence codes: an explanation of the GPMDB evidence code system.
Retrieved from "http://wiki.thegpm.org/wiki/Main_Page"
Personal tools