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21:52, 7 April 2011 (hist) (diff) m Technical Overview, dblist keyword.pl ‎ (Protected "Technical Overview, dblist keyword.pl" ([edit=sysop] (indefinite) [move=sysop] (indefinite))) (top)
21:51, 7 April 2011 (hist) (diff) m Technical Overview, dblist gpmnum all.pl ‎ (Protected "Technical Overview, dblist gpmnum all.pl" ([edit=sysop] (indefinite) [move=sysop] (indefinite))) (top)
21:51, 7 April 2011 (hist) (diff) m Technical Overview, mem pep count table ‎ (Protected "Technical Overview, mem pep count table" ([edit=sysop] (indefinite) [move=sysop] (indefinite))) (top)
21:51, 7 April 2011 (hist) (diff) m Technical Overview, mem mods table ‎ (Protected "Technical Overview, mem mods table" ([edit=sysop] (indefinite) [move=sysop] (indefinite))) (top)
21:51, 7 April 2011 (hist) (diff) m Technical Overview, MRM table relationships ‎ (Protected "Technical Overview, MRM table relationships" ([edit=sysop] (indefinite) [move=sysop] (indefinite))) (top)
21:51, 7 April 2011 (hist) (diff) m Technical Overview, gpmnotes table ‎ (Protected "Technical Overview, gpmnotes table" ([edit=sysop] (indefinite) [move=sysop] (indefinite))) (top)
21:51, 7 April 2011 (hist) (diff) m Technical Overview, proseq table ‎ (Protected "Technical Overview, proseq table" ([edit=sysop] (indefinite) [move=sysop] (indefinite))) (top)
21:50, 7 April 2011 (hist) (diff) m Technical Overview, project table ‎ (Protected "Technical Overview, project table" ([edit=sysop] (indefinite) [move=sysop] (indefinite))) (top)
21:50, 7 April 2011 (hist) (diff) m Technical Overview, peptide mut table ‎ (Protected "Technical Overview, peptide mut table" ([edit=sysop] (indefinite) [move=sysop] (indefinite))) (top)
21:50, 7 April 2011 (hist) (diff) m Technical Overview, paths table ‎ (Protected "Technical Overview, paths table" ([edit=sysop] (indefinite) [move=sysop] (indefinite))) (top)
21:49, 7 April 2011 (hist) (diff) m Technical Overview, peptide index table ‎ (Protected "Technical Overview, peptide index table" ([edit=sysop] (indefinite) [move=sysop] (indefinite))) (top)
21:49, 7 April 2011 (hist) (diff) m Technical Overview, GPMDB Updates ‎ (Protected "Technical Overview, GPMDB Updates" ([edit=sysop] (indefinite) [move=sysop] (indefinite))) (top)
21:49, 7 April 2011 (hist) (diff) m Technical Overview ‎ (Protected "Technical Overview": High traffic page ([edit=sysop] (indefinite) [move=sysop] (indefinite)) [cascading]) (top)
21:48, 7 April 2011 (hist) (diff) m Technical Overview, dblist pep summary.pl ‎ (Protected "Technical Overview, dblist pep summary.pl" ([edit=sysop] (indefinite) [move=sysop] (indefinite))) (top)
21:48, 7 April 2011 (hist) (diff) m Technical Overview, plist.pl ‎ (Protected "Technical Overview, plist.pl" ([edit=sysop] (indefinite) [move=sysop] (indefinite))) (top)
21:47, 7 April 2011 (hist) (diff) m GPM ‎ (Protected "GPM" ([edit=sysop] (indefinite) [move=sysop] (indefinite))) (top)
21:47, 7 April 2011 (hist) (diff) m Updating Protein Omega Counts ‎ (Protected "Updating Protein Omega Counts" ([edit=sysop] (indefinite) [move=sysop] (indefinite))) (top)
21:46, 7 April 2011 (hist) (diff) m Technical Overview, mem peak info table ‎ (Protected "Technical Overview, mem peak info table" ([edit=sysop] (indefinite) [move=sysop] (indefinite))) (top)
21:46, 7 April 2011 (hist) (diff) m Technical Overview, mem acc nums table ‎ (Protected "Technical Overview, mem acc nums table" ([edit=sysop] (indefinite) [move=sysop] (indefinite))) (top)
21:46, 7 April 2011 (hist) (diff) m Technical Overview, dblist gpmnotes.pl ‎ (Protected "Technical Overview, dblist gpmnotes.pl" ([edit=sysop] (indefinite) [move=sysop] (indefinite))) (top)
21:45, 7 April 2011 (hist) (diff) m Project Notes Tag Cloud ‎ (Protected "Project Notes Tag Cloud" ([edit=sysop] (indefinite) [move=sysop] (indefinite))) (top)
21:45, 7 April 2011 (hist) (diff) m Technical Overview, ppath.pl ‎ (Protected "Technical Overview, ppath.pl" ([edit=sysop] (indefinite) [move=sysop] (indefinite))) (top)
21:45, 7 April 2011 (hist) (diff) m Technical Overview, AJAX content ‎ (Protected "Technical Overview, AJAX content" ([edit=sysop] (indefinite) [move=sysop] (indefinite))) (top)
21:44, 7 April 2011 (hist) (diff) m Technical Overview, mem peptides table ‎ (Protected "Technical Overview, mem peptides table" ([edit=sysop] (indefinite) [move=sysop] (indefinite))) (top)
21:43, 7 April 2011 (hist) (diff) m Technical Overview, peptide xlib.pl ‎ (Protected "Technical Overview, peptide xlib.pl" ([edit=sysop] (indefinite) [move=sysop] (indefinite))) (top)
21:42, 7 April 2011 (hist) (diff) m Technical Overview, phplctab.pl ‎ (Protected "Technical Overview, phplctab.pl" ([edit=sysop] (indefinite) [move=sysop] (indefinite))) (top)
21:42, 7 April 2011 (hist) (diff) m Technical Overview, dblist protein mut.pl ‎ (Protected "Technical Overview, dblist protein mut.pl" ([edit=sysop] (indefinite) [move=sysop] (indefinite))) (top)
21:42, 7 April 2011 (hist) (diff) m Technical Overview, result table ‎ (Protected "Technical Overview, result table" ([edit=sysop] (indefinite) [move=sysop] (indefinite))) (top)
21:42, 7 April 2011 (hist) (diff) m Technical Overview, ptissue.pl ‎ (Protected "Technical Overview, ptissue.pl" ([edit=sysop] (indefinite) [move=sysop] (indefinite))) (top)
21:41, 7 April 2011 (hist) (diff) m Technical Overview, peptide table ‎ (Protected "Technical Overview, peptide table" ([edit=sysop] (indefinite) [move=sysop] (indefinite))) (top)
21:41, 7 April 2011 (hist) (diff) m Technical Overview, peptide.pl ‎ (Protected "Technical Overview, peptide.pl" ([edit=sysop] (indefinite) [move=sysop] (indefinite)) [cascading]) (top)
21:41, 7 April 2011 (hist) (diff) m GPM recent changes ‎ (Protected "GPM recent changes" ([edit=sysop] (indefinite) [move=sysop] (indefinite))) (top)
21:41, 7 April 2011 (hist) (diff) m X!!Tandem ‎ (Protected "X!!Tandem" ([edit=sysop] (indefinite) [move=sysop] (indefinite)))
21:40, 7 April 2011 (hist) (diff) m Technical Overview, dblist v.pl ‎ (Protected "Technical Overview, dblist v.pl" ([edit=sysop] (indefinite) [move=sysop] (indefinite))) (top)
21:40, 7 April 2011 (hist) (diff) m Technical Overview, dblist pep.pl ‎ (Protected "Technical Overview, dblist pep.pl" ([edit=sysop] (indefinite) [move=sysop] (indefinite)) [cascading]) (top)
21:39, 7 April 2011 (hist) (diff) m Main Page ‎ (Protected "Main Page": High traffic page ([edit=sysop] (indefinite) [move=sysop] (indefinite)) [cascading])
21:00, 26 January 2011 (hist) (diff) Updating Protein Omega Counts ‎
20:01, 26 January 2011 (hist) (diff) N Updating Protein Omega Counts ‎ (Created page with 'The protein_omega_count table is a part of the peakdb database. The table consists of five columns: *'''label''': the accession number of a protein, found in the [[Te…')
22:45, 25 January 2011 (hist) (diff) Updating Ontology Collections ‎
22:24, 25 January 2011 (hist) (diff) Updating Ontology Collections ‎
19:18, 25 January 2011 (hist) (diff) N Updating Ontology Collections ‎ (Created page with 'The contents of the files viewable through http://gpmdb.thegpm.org/go/index.html can be both refreshed and updated on a [[Local_GPM_Installation_Instructions|standard installati…')
17:48, 25 January 2011 (hist) (diff) m Canadian National Proteomics Network ‎ (Reverted edits by Aleksa (Talk) to last revision by WikiSysop)
18:07, 23 December 2010 (hist) (diff) Main Page ‎
18:06, 23 December 2010 (hist) (diff) m Main Page ‎
18:05, 23 December 2010 (hist) (diff) m Main Page ‎
21:59, 22 December 2010 (hist) (diff) m Help:Contents ‎ (Reverted edits by 92.241.191.30 (Talk) to last revision by 137.82.2.176)
18:38, 6 December 2010 (hist) (diff) X!!Tandem ‎
18:36, 6 December 2010 (hist) (diff) m X!!Tandem ‎ (Reverted edits by 110.8.253.100 (Talk) to last revision by 123.125.156.178)
18:18, 30 November 2010 (hist) (diff) N File:HeatMapPallete.jpg ‎ (Upload test for newly-migrated site.) (top)
18:17, 30 November 2010 (hist) (diff) m Main Page ‎
18:11, 18 October 2010 (hist) (diff) Technical Overview, result table ‎
17:08, 22 September 2010 (hist) (diff) Technical Overview, dblist label.pl ‎ (→Display Elements)
17:07, 22 September 2010 (hist) (diff) Technical Overview, dblist label all.pl ‎ (→Display Elements)
17:05, 22 September 2010 (hist) (diff) N Project Notes Tag Cloud ‎ (New page: Two associated changes have been made to the accession number search result pages on the GPM. First, the project notes associated with each result ...)
17:32, 24 August 2010 (hist) (diff) m Local GPM Installation Instructions ‎ (→Apache Configuration)
17:31, 24 August 2010 (hist) (diff) m Local GPM Installation Instructions ‎ (→Database Configuration)
17:28, 24 August 2010 (hist) (diff) m Local GPM Installation Instructions ‎ (→Obtaining Server Software)
17:26, 24 August 2010 (hist) (diff) m Local GPM Installation Instructions ‎ (→Prerequisites)
20:43, 23 August 2010 (hist) (diff) m Local GPM Installation Instructions ‎ (→MySQL Configuration)
20:39, 23 August 2010 (hist) (diff) Local GPM Installation Instructions ‎ (→MySQL Installation)
20:32, 23 August 2010 (hist) (diff) m Local GPM Installation Instructions ‎ (→MySQL Installation)
20:35, 20 August 2010 (hist) (diff) Local GPM Installation Instructions ‎ (→Script Configuration)
20:34, 20 August 2010 (hist) (diff) Local GPM Installation Instructions ‎ (→Installation)
20:32, 20 August 2010 (hist) (diff) Local GPM Installation Instructions ‎ (→MySQL Configuration)
16:01, 20 August 2010 (hist) (diff) m Canadian National Proteomics Network ‎ (→Mission)
15:59, 20 August 2010 (hist) (diff) m Canadian National Proteomics Network ‎ (Reverted edits by Alysia (Talk); changed back to last version by NancyRomero)
17:08, 18 August 2010 (hist) (diff) Local GPM Installation Instructions ‎ (→Automation Configuration)
19:13, 11 August 2010 (hist) (diff) Local GPM Installation Instructions ‎ (→Database Configuration)
17:51, 4 August 2010 (hist) (diff) Normal Clinical Tissue Alliance ‎ (→Data)
17:50, 4 August 2010 (hist) (diff) Normal Clinical Tissue Alliance ‎ (→Clinical tissues)
17:44, 4 August 2010 (hist) (diff) Normal Clinical Tissue Alliance ‎ (→Releases)
18:55, 21 July 2010 (hist) (diff) Local GPM Installation Instructions ‎ (→Database Configuration)
18:47, 21 July 2010 (hist) (diff) Local GPM Installation Instructions ‎ (→Database Configuration)
18:43, 21 July 2010 (hist) (diff) Local GPM Installation Instructions ‎ (→Database Configuration)
22:34, 20 July 2010 (hist) (diff) Local GPM Installation Instructions ‎ (→Installation)
22:33, 20 July 2010 (hist) (diff) Local GPM Installation Instructions ‎ (→Obtaining Server Software)
19:02, 2 July 2010 (hist) (diff) m Local GPM Installation Instructions ‎
18:39, 30 June 2010 (hist) (diff) m Local GPM Installation Instructions ‎ (→Automation Configuration)
21:41, 29 June 2010 (hist) (diff) m Local GPM Installation Instructions ‎ (→MySQL Configuration)
21:38, 29 June 2010 (hist) (diff) m Local GPM Installation Instructions ‎ (→Automation Configuration)
21:37, 29 June 2010 (hist) (diff) Local GPM Installation Instructions ‎ (→Database Configuration)
20:57, 29 June 2010 (hist) (diff) Local GPM Installation Instructions ‎ (→Script Configuration)
20:54, 29 June 2010 (hist) (diff) Local GPM Installation Instructions ‎ (→Prequisites)
20:53, 29 June 2010 (hist) (diff) Local GPM Installation Instructions ‎
20:34, 29 June 2010 (hist) (diff) Local GPM Installation Instructions ‎ (→Perl)
20:33, 29 June 2010 (hist) (diff) Local GPM Installation Instructions ‎
18:41, 29 June 2010 (hist) (diff) Local GPM Installation Instructions ‎
23:39, 28 June 2010 (hist) (diff) Local GPM Installation Instructions ‎
22:41, 28 June 2010 (hist) (diff) m Local GPM Installation Instructions ‎
20:55, 28 June 2010 (hist) (diff) Local GPM Installation Instructions ‎
19:38, 28 June 2010 (hist) (diff) Local GPM Installation Instructions ‎
21:56, 25 June 2010 (hist) (diff) Local GPM Installation Instructions ‎
21:13, 25 June 2010 (hist) (diff) Local GPM Installation Instructions ‎
20:03, 25 June 2010 (hist) (diff) Local GPM Installation Instructions ‎
19:52, 25 June 2010 (hist) (diff) Local GPM Installation Instructions ‎
19:53, 24 June 2010 (hist) (diff) N Local GPM Installation Instructions ‎ (New page: #Key ##Text written in <tt>fixed-space font</tt> denote text you will type in, as written. ##Text written in '''bold''' are directory paths. #Prerequisites ##A fully patched 32-bit version...)
18:55, 16 March 2010 (hist) (diff) N Technical Overview, dblist v.pl ‎ (New page: This compares a single identification of a protein accession number in a GPM result file against a composite of all other identifications of this specific protein accession number. The re...)
18:31, 16 March 2010 (hist) (diff) Technical Overview, peak details.pl ‎ (→Display Elements)
17:38, 16 March 2010 (hist) (diff) Technical Overview, peak search.pl ‎ (→Display Elements - Accession Search)
17:34, 16 March 2010 (hist) (diff) Technical Overview, peak search.pl ‎ (→Display Elements - Mass or Peptide Sequence Search)
17:30, 16 March 2010 (hist) (diff) m Technical Overview, peak search.pl ‎ (→Display Elements - Mass or Peptide Sequence Search)
22:50, 15 March 2010 (hist) (diff) Technical Overview ‎ (→GPMDB)
22:48, 15 March 2010 (hist) (diff) Technical Overview, protein.pl ‎ (→Display Elements)
22:43, 15 March 2010 (hist) (diff) GPM-MRM ‎ (→Search Results)
22:32, 15 March 2010 (hist) (diff) GPM-MRM ‎ (→Example Searches)
22:23, 15 March 2010 (hist) (diff) GPM-MRM ‎ (→Types of Searches)
22:17, 15 March 2010 (hist) (diff) GPM-MRM ‎ (→Types of Searches)
19:13, 26 November 2009 (hist) (diff) Technical Overview, dblist pep modmass.pl ‎
19:10, 26 November 2009 (hist) (diff) File:Gpmdb update workflow.jpg ‎ (uploaded a new version of "Image:Gpmdb update workflow.jpg") (top)
19:08, 26 November 2009 (hist) (diff) File:Gpmdb update workflow.jpg ‎ (uploaded a new version of "Image:Gpmdb update workflow.jpg")
19:07, 26 November 2009 (hist) (diff) File:Gpmdb update workflow.jpg ‎ (uploaded a new version of "Image:Gpmdb update workflow.jpg")
19:03, 26 November 2009 (hist) (diff) N Technical Overview, peptide index table ‎ (New page: The peptide_index table stores pepids from the peptide table correlated to the peptide sequence to which they are assigned. Each row in the table con...)
18:48, 26 November 2009 (hist) (diff) N Technical Overview, dblist pep summary.pl ‎ (New page: This searches the GPM for instances of specific peptide sequences, and displays some summary information about them. The one required argument is ''peptides'', which is a delimited set of...)
18:47, 26 November 2009 (hist) (diff) Technical Overview ‎ (→GPMDB)
18:35, 26 November 2009 (hist) (diff) m Technical Overview, dblist pep modmass.pl ‎
18:29, 26 November 2009 (hist) (diff) m Technical Overview, dblist pep modmass.pl ‎
18:28, 26 November 2009 (hist) (diff) m Technical Overview, dblist pep modmass.pl ‎
18:28, 26 November 2009 (hist) (diff) Technical Overview ‎ (→GPMDB)
20:21, 18 November 2009 (hist) (diff) Most Wanted ‎
20:19, 18 November 2009 (hist) (diff) N File:Gpmdb most wanted list with sequence.xls ‎ (List of human proteins missing from GPMDB as of 17 Nov 2009, including protein sequence information, in Excel format.) (top)
19:00, 18 November 2009 (hist) (diff) Most Wanted ‎
18:58, 18 November 2009 (hist) (diff) File:Gpmdb most wanted list.xls ‎ (uploaded a new version of "Image:Gpmdb most wanted list.xls": List of human proteins missing from GPMDB as of 17 Nov 2009, MS Excel format.) (top)
18:57, 18 November 2009 (hist) (diff) Most Wanted ‎
23:49, 17 November 2009 (hist) (diff) N Most Wanted ‎ (New page: Image:Silhouette.gif Out of more than 20,000 proteins in the human proteome, only roughly 1,100 are missing from the GPMDB. A list of missing proteins is linked below. Do you...)
23:14, 17 November 2009 (hist) (diff) N File:Gpmdb most wanted list.xls ‎ (Spreadsheet of proteins missing from GPMDB as of 17 Nov 2009)
23:02, 17 November 2009 (hist) (diff) N File:Silhouette.gif ‎ (Silhouette) (top)
18:55, 20 October 2009 (hist) (diff) N Technical Overview, protein information toolbar ‎ (New page: The protein information toolbar is a list of links to both external and internal resources regarding a protein accession number. It appears at the top of [[Technical Overview, protein.pl|...)
18:41, 20 October 2009 (hist) (diff) m Technical Overview, protein.pl ‎
18:39, 20 October 2009 (hist) (diff) N File:Gpmdb protein toolbar yeast.jpg ‎ (Protein.pl protein toolbar for an example yeast accession number.) (top)
18:32, 20 October 2009 (hist) (diff) N File:Gpmdb protein toolbar.jpg ‎ (JPEG of an example protein toolbar section from protein.pl.) (top)
18:27, 20 October 2009 (hist) (diff) m Technical Overview, AJAX content ‎
18:08, 20 October 2009 (hist) (diff) N Technical Overview, AJAX content ‎ (New page: Several pages on the GPM contain dynamically-generated [http://en.wikipedia.org/wiki/AJAX AJAX] content. These pieces of data are given a yellow background to make them visually distinct ...)
19:20, 13 August 2009 (hist) (diff) N Technical Overview, Coverage diagram ‎ (New page: The coverage diagram is a graphical representation of the peptide coverage of a single identification of a protein. All coverage diagrams are scaled to be 600 pixels in length, regardless...)
19:00, 13 August 2009 (hist) (diff) N File:Gpmdb coverage 2.jpg ‎ (Coverage diagram of ENSP00000324804, different identificaiton.) (top)
18:59, 13 August 2009 (hist) (diff) N File:Gpmdb coverage 1.jpg ‎ (coverage diagram of ENSP00000324804) (top)
19:28, 25 June 2009 (hist) (diff) Technical Overview, omega display ‎
21:54, 18 June 2009 (hist) (diff) Technical Overview, omega display ‎
21:47, 18 June 2009 (hist) (diff) N Technical Overview, omega display ‎ (New page: The omega display is a measure of peptide frequency for a single protein identification. It comes in two forms, giving information for both the peptide (ω) and protein (Ω) lev...)
17:53, 5 June 2009 (hist) (diff) Technical Overview ‎ (→Display Elements)
22:17, 15 May 2009 (hist) (diff) N Technical Overview, peak details.pl ‎ (New page: This script displays detailed information regarding other peptides that have signals close to the mass-to-charge readings of the peptide in question. The arguments are ''pepid'', ''patter...)
18:41, 15 May 2009 (hist) (diff) N Technical Overview, peptide xlib.pl ‎ (New page: This script will illustrate the effects of differences in peptides (modifications, mutations or residue gain/loss) on the spectrum for that peptide. The required arguments are ''proex'', ...)
18:33, 30 April 2009 (hist) (diff) Upgrading a GPM Installation ‎
19:33, 17 April 2009 (hist) (diff) GPM-MRM ‎ (→Types of Searches)
19:16, 9 April 2009 (hist) (diff) N Technical Overview, peak search.pl ‎ (New page: This script shows the result of searches done on the MRM data stored in the GPM. Searching can be done on any combination of parent ion mass, peptide sequence or accession num...)
19:01, 8 April 2009 (hist) (diff) N Technical Overview, MRM table relationships ‎ (New page: Image:Peakdb_table_relations.jpg == Notes == *Tables are blue blocks, with their names italicized. *Primary keys for each table are listed as underlined. *A diamond between two table...)
18:56, 8 April 2009 (hist) (diff) N File:Peakdb table relations.jpg ‎ (Table relationship diagram for the tables of peakdb) (top)
18:13, 8 April 2009 (hist) (diff) N Technical Overview, ptissue.pl ‎ (New page: This script displays the proteins in a GPM result file divided into categories defined by Normal_Clinical_Tissue_Alliance from selected [http://obofoundry.org/cgi-bin/detail.cgi?id=bre...)
17:53, 8 April 2009 (hist) (diff) m Technical Overview, protein.pl ‎
17:51, 8 April 2009 (hist) (diff) N Technical Overview, protein.pl ‎ (New page: This script displays information about a single protein identification from a GPM result file. The required arguments are ''path'', ''proex'', ''label'', ''homolog'', ''uid'' ''npep'' and...)
17:32, 8 April 2009 (hist) (diff) N Technical Overview, ppath.pl ‎ (New page: This script lists the [http://www.genome.jp/kegg/pathway.html KEGG pathways] for the proteins found in a GPMDB file. The required arguments are ''path'', ''proex'' and ''ltype''. ''path'...)
19:04, 3 April 2009 (hist) (diff) N Technical Overview, plist.pl ‎ (New page: This script lists the proteins identified in a given GPMDB result file. The required arguments are ''path'', ''proex'' and ''ltype''. ''path'' is the file system path to the GPM result f...)
18:47, 3 April 2009 (hist) (diff) N Technical Overview, phplctab.pl ‎ (New page: This script displays the spectra in order of identification from a GPM result file, along with other identification information. The required arguments are ''path'', ''proex'' and ''ltype...)
21:50, 2 April 2009 (hist) (diff) Normal Clinical Tissue Alliance ‎ (→Releases)
21:49, 2 April 2009 (hist) (diff) Normal Clinical Tissue Alliance ‎ (→Clinical tissues)
21:45, 2 April 2009 (hist) (diff) Normal Clinical Tissue Alliance ‎
19:14, 2 April 2009 (hist) (diff) N Technical Overview, pgo.pl ‎ (New page: This script displays the proportions of the proteins in a GPM result file in separate gene ontologies. The required arguments are ''path'', ''proex'', ''npep'' and ''ltype''. ''path'' is...)
18:38, 2 April 2009 (hist) (diff) N Technical Overview, pgel.pl ‎ (New page: This script generates a two-dimensional gel view of the proteins identified in the GPM result file. The required arguments are ''path'', ''proex'', ''npep'' and ''ltype''. ''path'' is th...)
18:23, 2 April 2009 (hist) (diff) N Technical Overview, peptide.pl ‎ (New page: This script displays information about a single peptide identification from a GPM data file. It is used as the target of the clickable links in the list of identified peptides from [[Tech...)
18:04, 2 April 2009 (hist) (diff) N Technical Overview, pepdelta.pl ‎ (New page: This script displays a histogram depicting the parent ion mass error as a function of the expectation value. The required argument ''path'' is the path to the GPM file to parse for retent...)
23:08, 10 March 2009 (hist) (diff) N Technical Overview, ont builder.pl ‎ (New page: This is a utility to update the contents of the protein lists which make up the different ontology views of proteins. This script is not usable by external users of GPMDB; instead, this i...)
23:36, 18 February 2009 (hist) (diff) GPM-MRM ‎ (→Example Searches)
23:26, 18 February 2009 (hist) (diff) Technical Overview ‎ (→GPMDB)
23:24, 18 February 2009 (hist) (diff) m Technical Overview ‎ (→peakdb)
23:16, 18 February 2009 (hist) (diff) m Technical Overview ‎ (→GPMDB)
23:12, 18 February 2009 (hist) (diff) N Technical Overview, dblist pep modmass.pl ‎ (New page: This searches GPMDB for instances of peptides from a specific protein that contain given modification. This differs from the action of [[Technical Overview, dblist_protein_mod.pl|dblist_p...)
22:55, 18 February 2009 (hist) (diff) m Technical Overview ‎ (→GPMDB)
22:54, 18 February 2009 (hist) (diff) N Technical Overview, dblist protein mut.pl ‎ (New page: This searches GPMDB for instances of peptides from a specific protein that contain a known SNAP. This differs from the action of [[Technical Overview, dblist_pep_modmass.pl|dblist_pep_mod...)
20:31, 18 February 2009 (hist) (diff) m Technical Overview, mem pep count table ‎
20:27, 18 February 2009 (hist) (diff) N Technical Overview, mem peptides table ‎ (New page: The ''mem_peptides'' table in the peakdb database is used to generate the MRM displays for protein and peptide information in GPMDB. The main difference betwee...)
20:22, 18 February 2009 (hist) (diff) N Technical Overview, mem pep count table ‎ (New page: The ''mem_pep_count'' table in the peakdb database is used to generate the MRM displays for protein and peptide information in GPMDB. The main difference betwe...)
20:17, 18 February 2009 (hist) (diff) N Technical Overview, mem peak info table ‎ (New page: The ''mem_peak_info'' table in the peakdb database is used to generate the MRM displays for protein and peptide information in GPMDB. The main difference betwe...)
20:07, 18 February 2009 (hist) (diff) N Technical Overview, mem mods table ‎ (New page: The ''mem_mods'' table in the peakdb database is used to generate the MRM for protein and peptide information in GPMDB. The main difference between this table ...)
20:01, 18 February 2009 (hist) (diff) m Technical Overview ‎ (→peakdb)
20:00, 18 February 2009 (hist) (diff) m Technical Overview ‎ (→peakdb)
19:59, 18 February 2009 (hist) (diff) Technical Overview ‎ (→peakdb)
19:55, 18 February 2009 (hist) (diff) N Technical Overview, mem acc nums table ‎ (New page: The ''mem_acc_nums'' table in the peakdb database is used to generate the MRM displays for protein and peptide information in GPMDB. The main difference betwee...)
19:23, 18 February 2009 (hist) (diff) N Technical Overview, gpmnotes table ‎ (New page: The ''gpmnotes'' table stores the collection of note fields that were included with the initial data file that was submitted to the GPM for identification. This table is updated as part o...)
19:17, 18 February 2009 (hist) (diff) N Technical Overview, map table ‎ (New page: The ''map'' table in the EnspMapDB stores the mapping between protein accession numbers and their description. This table is only updated during system maintenance, such as for the inclus...)
18:50, 18 February 2009 (hist) (diff) m Technical Overview ‎ (→EnspMapDB)
18:48, 18 February 2009 (hist) (diff) m Technical Overview ‎ (→GPMDB)
18:45, 18 February 2009 (hist) (diff) N Technical Overview, dblist gpmnotes.pl ‎ (New page: This script searches the gpmnotes table from the EnspMapDB database for information submitted along with the data file to the search software. The r...)
18:41, 18 February 2009 (hist) (diff) Technical Overview ‎ (→GPMDB)
18:13, 18 February 2009 (hist) (diff) m Technical Overview ‎ (→GPMDB)
18:09, 18 February 2009 (hist) (diff) m Technical Overview ‎ (→GPMDB)
00:35, 18 February 2009 (hist) (diff) Technical Overview ‎ (→Software)
00:34, 18 February 2009 (hist) (diff) Technical Overview ‎ (→Database Tables)
00:25, 18 February 2009 (hist) (diff) m Technical Overview ‎
00:23, 18 February 2009 (hist) (diff) N Technical Overview, dblist keyword.pl ‎ (New page: This searches for protein descriptions that contain a specific word or phrase. The database searched is EnspMapDB, which is installed alongside GPMDB in a standard installation. There ar...)
23:08, 17 February 2009 (hist) (diff) N Technical Overview, dblist pep.pl ‎ (New page: This searches GPMDB for instances of identified peptides that match a given residue sequence. The required argument is ''seq'', which is the residue sequence for which to search. Optiona...)
22:21, 17 February 2009 (hist) (diff) m Technical Overview ‎ (→Software)
22:20, 17 February 2009 (hist) (diff) N Technical Overview, project table ‎ (New page: The ''project'' table is an on-disk index of the project details from GPMDB result files. It is used in dblist_gpmnotes.pl searches. The conten...)
20:24, 17 February 2009 (hist) (diff) m Technical Overview ‎ (→Database Updates)
20:23, 17 February 2009 (hist) (diff) m Technical Overview, proseq table ‎
20:12, 17 February 2009 (hist) (diff) N Technical Overview, dblist gpmnum all.pl ‎ (New page: This script searches the GPMDB for the proteins identified in a specific result file and displays them in groups of 20. The one required argument is ''gpmnum'', a GPMDB result file identi...)
20:00, 17 February 2009 (hist) (diff) Technical Overview, dblist gpmnum.pl ‎
19:58, 17 February 2009 (hist) (diff) Technical Overview ‎
19:28, 17 February 2009 (hist) (diff) m Technical Overview ‎
19:27, 17 February 2009 (hist) (diff) N Technical Overview, dblist gpmnum.pl ‎ (New page: This script searches the GPMDB for the twenty most reliably identified proteins in a specific result file. The one required argument is ''gpmnum'', a GPMDB result file identifier of the f...)
18:40, 17 February 2009 (hist) (diff) N Technical Overview, dblist label all.pl ‎ (New page: This script searches GPMDB for protein identifications based on accession number. The one required arugment is ''label'', which is a protein accession number. The results of the search a...)
18:37, 17 February 2009 (hist) (diff) m Technical Overview, dblist label.pl ‎
18:35, 17 February 2009 (hist) (diff) m Technical Overview ‎
18:11, 17 February 2009 (hist) (diff) N Technical Overview, dblist label.pl ‎ (New page: This searches GPMDB for protein identifications based on accession number. The required argument is ''label'', which is a protein accession number. The results of the search are the twen...)
18:11, 17 February 2009 (hist) (diff) m Technical Overview ‎
17:53, 17 February 2009 (hist) (diff) Technical Overview ‎
20:07, 16 February 2009 (hist) (diff) m Technical Overview ‎
20:05, 16 February 2009 (hist) (diff) N Technical Overview, proseq table ‎ (New page: The ''proseq'' table stores the full residue sequences for the proteins which can be identified by the search software. The unique identifier for a given protein sequence is stored as par...)
19:50, 16 February 2009 (hist) (diff) N Technical Overview, peptide mut table ‎ (New page: The ''peptide_mut'' table is an on-disk index of known Single Nucleotide-induced Amino acid Polymorphism (SNAP) examples in peptides stored in GPMDB. It is used in [[Technical Overview, d...)
19:39, 16 February 2009 (hist) (diff) N Technical Overview, paths table ‎ (New page: The ''paths'' table is used by the GPMDB installations to store information on result file locations. It is not updated during the daily update process, nor can users access it. This tab...)
19:24, 16 February 2009 (hist) (diff) m Technical Overview, peptide word index table ‎
19:23, 16 February 2009 (hist) (diff) N Technical Overview, peptide word index table ‎ (New page: The ''peptide_word_index'' table is used for doing peptide residue subsequence searches. It is an on-disk index of the peptides in which four-residue...)
18:59, 16 February 2009 (hist) (diff) m Technical Overview, aa table ‎
18:59, 16 February 2009 (hist) (diff) m Technical Overview, peptide table ‎
18:59, 16 February 2009 (hist) (diff) m Technical Overview, protein table ‎
18:59, 16 February 2009 (hist) (diff) m Technical Overview, result table ‎
18:58, 16 February 2009 (hist) (diff) m Technical Overview, peptide table ‎
18:57, 16 February 2009 (hist) (diff) N Technical Overview, best expect table ‎ (New page: The ''best_expect'' table is an on-disk index used to speed the result display of keyword searching. It records the lowest (and therefore best) e...)
18:49, 16 February 2009 (hist) (diff) N Technical Overview, aa table ‎ (New page: The ''aa'' table records the amino acid modifications or mutations found on a given peptide. A single peptide can have zero or one associated mutatio...)
18:43, 16 February 2009 (hist) (diff) m Technical Overview, peptide table ‎
18:25, 16 February 2009 (hist) (diff) N Technical Overview, peptide table ‎ (New page: The ''peptide'' table records the details for each peptide identification, which is in turn used to identify the proteins in a GPM result file. If a ...)
22:54, 13 February 2009 (hist) (diff) N Technical Overview, protein table ‎ (New page: The ''protein'' table records the details for each protein identification in a GPM result file. Each entry in the ''protein'' table corresponds to a s...)
22:25, 13 February 2009 (hist) (diff) N Technical Overview, result table ‎ (New page: The ''result'' table records the name, location and availability of all GPM result files generated through the submittal of data files to X!Tandem, P3 or Hunter on the GPM's se...)
19:17, 13 February 2009 (hist) (diff) N Technical Overview, table relationships ‎ (New page: Image:Gpmdb_table_relations.jpg == Notes == *Tables are blue blocks, with their names italicized. *Primary keys for each table are listed as underlined. *A diamond between two tables...)
19:09, 13 February 2009 (hist) (diff) N File:Gpmdb table relations.jpg ‎ (The relationships between the tables that make up the GPMDB installation.) (top)
23:48, 11 February 2009 (hist) (diff) Technical Overview, GPMDB Updates ‎
23:47, 11 February 2009 (hist) (diff) File:Gpmdb update workflow.jpg ‎ (uploaded a new version of "Image:Gpmdb update workflow.jpg": Workflow for what scripts are called while updating GPMDB with new information.)
23:43, 11 February 2009 (hist) (diff) N File:Gpmdb update workflow.jpg ‎ (flowchart for order of scripts called when new information is added to GPMDB.)
23:42, 11 February 2009 (hist) (diff) N Technical Overview, GPMDB Updates ‎ (New page: In the workflow below, script names are in '''bold''' and database table names are in ''italic''. #calls function set_lock ##filesystem change: makes a lock file #calls system "gzip" ##fi...)
23:01, 11 February 2009 (hist) (diff) N Technical Overview ‎ (New page: This page will serve as an index to the explanation pages for the entities that make up the GPM. == Database Updates == *Technical Overview, GPMDB Updates: the steps taken to add new...)
19:21, 30 January 2009 (hist) (diff) N Get gpmnum ‎ (the get_gpmnum script will return a bare-bones list of GPM numbers based off a keyword search of the result file notes.)
18:16, 20 January 2009 (hist) (diff) m Mutated Protein Search ‎ (→Data)
18:16, 20 January 2009 (hist) (diff) m Modified Protein Search ‎ (→Data)
20:09, 16 January 2009 (hist) (diff) m Mutated Protein Search ‎ (→Data)
20:54, 15 January 2009 (hist) (diff) m Mutated Protein Search ‎ (→Data)
21:25, 14 January 2009 (hist) (diff) N Mutated Protein Search ‎ (New page: ==Description== The GPM can now be used to find instances of proteins which have mutations. ==Examples== The page, [http://gpmdb.thegpm.org/thegpm-cgi/dblist_protein_mut.pl dblist_protein...)
20:40, 14 January 2009 (hist) (diff) N Modified Protein Search ‎ (Description of The GPM's modified protein searching functionality)
16:58, 14 October 2008 (hist) (diff) m Normal Clinical Tissue Alliance ‎
18:56, 29 August 2008 (hist) (diff) N Upgrading a GPM Installation ‎ (New page: This is a set of instructions for the steps required to upgrade the software that makes up a Windows installation of The GPM. The components are a MySQL installation, an Apache installati...)
23:06, 31 July 2008 (hist) (diff) m GPM-MRM ‎ (→Types of Searches)
22:45, 31 July 2008 (hist) (diff) GPM-MRM ‎ (→Search Results)
22:36, 31 July 2008 (hist) (diff) m GPM-MRM ‎ (→Types of Searches)
18:29, 23 May 2008 (hist) (diff) m Keyword Search ‎ (→Target Modifiers)
18:28, 23 May 2008 (hist) (diff) m Keyword Search ‎ (→Target Modifiers)
18:25, 23 May 2008 (hist) (diff) m Keyword Search ‎ (→Target Modifiers)
18:11, 23 May 2008 (hist) (diff) N Keyword Search ‎ (How to use optional modifiers and operators to make GPMDB's keyword searching more flexible.)
21:50, 5 March 2008 (hist) (diff) Normal Clinical Tissue Alliance ‎ (→Clinical tissues)
18:45, 29 February 2008 (hist) (diff) Normal Clinical Tissue Alliance: Data Format ‎
23:44, 13 February 2008 (hist) (diff) N Normal Clinical Tissue Alliance: Data Format ‎ (New page: The formats for the tables which record the tissue information can be found below. Any changes to how data is stored will also be listed here. == Table Names == All tissue data is contai...)
22:13, 5 November 2007 (hist) (diff) N File:Gpm current.pdf ‎ (Example Uploaded PDF file.) (top)
21:34, 5 November 2007 (hist) (diff) N TheGPMWiki:Privacy policy ‎ (New page: At the Global Proteome Machine Organization (called the "GPM" below), an important part of our commitment to provide you with service excellence is our respect for your right to privacy. K...)
20:21, 5 November 2007 (hist) (diff) N MediaWiki:Sidebar ‎ (New page: * navigation ** mainpage|mainpage ** portal-url|portal ** currentevents-url|currentevents ** recentchanges-url|recentchanges ** randompage-url|randompage ** helppage|help <!-- ** sitesuppo...) (top)

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