(New page: This searches GPMDB for protein identifications based on accession number. The required argument is ''label'', which is a protein accession number. The results of the search are the twen...) |
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The required argument is ''label'', which is a protein accession number. The results of the search are the twenty best identifications of this protein, according to expect value. Each row lists the expect value, links to other data views, and a [[Technical Overview, Coverage diagram|coverage diagram]]. Optionally, the ''proex'' argument may be supplied; omitting it results in a default ''proex'' value of -1. This value is not used in the search, but is used to build the links to other scripts which expect it. | The required argument is ''label'', which is a protein accession number. The results of the search are the twenty best identifications of this protein, according to expect value. Each row lists the expect value, links to other data views, and a [[Technical Overview, Coverage diagram|coverage diagram]]. Optionally, the ''proex'' argument may be supplied; omitting it results in a default ''proex'' value of -1. This value is not used in the search, but is used to build the links to other scripts which expect it. | ||
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| + | == Display Elements == | ||
| + | *The count of identifications of this protein. | ||
| + | *The [[Technical Overview, protein information toolbar|information toolbar]], a series of links to both internal and external pages of other information regarding this protein. | ||
| + | *The human-readable information about this accession number, such as its given name (e.g., "Calumenin Precursor (Crocalbin)"), displayed with a yellow background. | ||
Above the twenty best results, the "all" link redirects to [[Technical Overview, dblist_label_all.pl|dblist_label_all.pl]], which displays all identifications of a protein, twenty results at a time. | Above the twenty best results, the "all" link redirects to [[Technical Overview, dblist_label_all.pl|dblist_label_all.pl]], which displays all identifications of a protein, twenty results at a time. | ||
This searches GPMDB for protein identifications based on accession number.
The required argument is label, which is a protein accession number. The results of the search are the twenty best identifications of this protein, according to expect value. Each row lists the expect value, links to other data views, and a coverage diagram. Optionally, the proex argument may be supplied; omitting it results in a default proex value of -1. This value is not used in the search, but is used to build the links to other scripts which expect it.
Above the twenty best results, the "all" link redirects to dblist_label_all.pl, which displays all identifications of a protein, twenty results at a time.
The per-identification links are:
The coverage diagram is an Adobe SVG element depicting the sections of the protein which are covered by the peptides identified for this protein in the original data file.
This script uses the following tables: protein, result, proseq.