(New page: This script shows the result of searches done on the MRM data stored in the GPM. Searching can be done on any combination of parent ion mass, peptide sequence or accession num...) |
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**'''# Obs''': the number of times this peptide has been identified in GPMDB. | **'''# Obs''': the number of times this peptide has been identified in GPMDB. | ||
**'''Accession''': the accession number of a protein in which this peptide was found. | **'''Accession''': the accession number of a protein in which this peptide was found. | ||
- | **''' | + | **'''Pos''': the position of this peptide in the protein identified by the accession number on that row. |
- | **''' | + | **'''Data''': a compound field with three elements: |
- | + | ***The ''Spectrum'' button leads to [[Technical Overview, peptide_xlib.pl|peptide_xlib.pl]] for this spectrum. | |
- | ***The | + | ***The ''Details'' button leads to [[Technical Overview, peak_details.pl|peak_details.pl]], to give a more detailed explanation of the spectrum. |
- | + | ***The ''+'' button shows or hides the spectrum table associated with this peptide. The top row is a list of m/z values, and the bottom row is the intensity corresponding to that m/z peak. | |
== Display Elements - Accession Search == | == Display Elements - Accession Search == | ||
*a form to search for identifications of this protein in GPMDB using [[Technical Overview, dblist_label.pl|dblist_label.pl]]. | *a form to search for identifications of this protein in GPMDB using [[Technical Overview, dblist_label.pl|dblist_label.pl]]. | ||
*descriptive text regarding the protein, highlighted in yellow. | *descriptive text regarding the protein, highlighted in yellow. | ||
- | *a | + | *a form to change the view of this page between HTML and a spreadsheet-compatible form. |
*the table of results: | *the table of results: | ||
- | |||
**'''Peptide Sequence''': the residue sequence of the peptides identified in this protein. | **'''Peptide Sequence''': the residue sequence of the peptides identified in this protein. | ||
**'''Charge''': a field of the charge states in which this peptide has been observed. | **'''Charge''': a field of the charge states in which this peptide has been observed. | ||
**'''Ret''': the calculated retention time of this peptide. | **'''Ret''': the calculated retention time of this peptide. | ||
**'''MRMs''': the number of records in the [[GPM-MRM|MRM database]] for this peptide. | **'''MRMs''': the number of records in the [[GPM-MRM|MRM database]] for this peptide. | ||
- | **'''Observed''': the number of times this peptide has been identified in GPMDB. | + | **'''Observed z=1''': the number of times this peptide has been identified in GPMDB with z=1. |
- | **'''log<sub>10</sub>(ω/ω<sub>0</sub>''': the log of the normalized count of identifications of this peptide in GPMDB. | + | **'''Observed z=2''': the number of times this peptide has been identified in GPMDB with z=2. |
- | **'''ω''': | + | **'''Observed z=3''': the number of times this peptide has been identified in GPMDB with z=3. |
+ | **'''log<sub>10</sub>(ω/ω<sub>0</sub>) z=1''': the log of the normalized count of identifications of this peptide in GPMDB with z=1. | ||
+ | **'''log<sub>10</sub>(ω/ω<sub>0</sub>) z=2''': the log of the normalized count of identifications of this peptide in GPMDB with z=2. | ||
+ | **'''log<sub>10</sub>(ω/ω<sub>0</sub>) z=3''': the log of the normalized count of identifications of this peptide in GPMDB with z=3. |
This script shows the result of searches done on the MRM data stored in the GPM. Searching can be done on any combination of parent ion mass, peptide sequence or accession number.
This script has two different displays; one for mass or sequence searching and one for accession numbers.