Updating Protein Omega Counts

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Revision as of 20:01, 26 January 2011

The protein_omega_count table is a part of the peakdb database. The table consists of five columns:

  • label: the accession number of a protein, found in the proseq table in GPMDB
  • seq: the residue sequence of a peptide identified as part of that protein, found in the peptide table in GPMDB
  • z1total: an integer for the number of times this peptide has been identified in the corresponding protein in a singly charged state
  • z2total: an integer for the number of times this peptide has been identified in the corresponding protein in a doubly charged state
  • z3total: an integer for the number of times this peptide has been identified in the corresponding protein in a triply charged state
Retrieved from "http://wiki.thegpm.org/wiki/Updating_Protein_Omega_Counts"
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