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== Software == | == Software == | ||
=== GPMDB === | === GPMDB === | ||
- | *[[Technical Overview, | + | *[[Technical Overview, dblist_gpmnotes.pl]]: to search the project information stored in a GPM result file.. |
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*[[Technical Overview, dblist_gpmnum.pl]]: to search by GPM result file number, and display the twenty most reliably identified proteins from it. | *[[Technical Overview, dblist_gpmnum.pl]]: to search by GPM result file number, and display the twenty most reliably identified proteins from it. | ||
*[[Technical Overview, dblist_gpmnum_all.pl]]: to search by GPM result file number, and display all proteins identified from it by pages. | *[[Technical Overview, dblist_gpmnum_all.pl]]: to search by GPM result file number, and display all proteins identified from it by pages. | ||
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*[[Technical Overview, dblist_keyword.pl]]: to search protein descriptions by keyword. | *[[Technical Overview, dblist_keyword.pl]]: to search protein descriptions by keyword. | ||
- | *[[Technical Overview, | + | *[[Technical Overview, dblist_label.pl]]: to search by accession number, and display the twenty best results. |
- | *[[Technical Overview, | + | *[[Technical Overview, dblist_label_all.pl]]: to search by accession number, and display all results by pages. |
+ | *[[Technical Overview, dblist_pep.pl]]: to search by residue sequence. | ||
+ | *[[Technical Overview, dblist_protein_mut.pl]]: to view peptides with known SNAPs. | ||
*[[Technical Overview, pgel.pl]]: to view a simulated two-dimensional gel of the proteins in a GPM result file. | *[[Technical Overview, pgel.pl]]: to view a simulated two-dimensional gel of the proteins in a GPM result file. | ||
+ | *[[Technical Overview, pgo.pl]]: to view the gene ontology of the proteins in a GPM result file. | ||
*[[Technical Overview, phplctab.pl]]: to view calculated HPLC information about the peptides in a GPM result file. | *[[Technical Overview, phplctab.pl]]: to view calculated HPLC information about the peptides in a GPM result file. | ||
- | *[[Technical Overview, | + | *[[Technical Overview, plist.pl]]: to view a summary of the protein identifications in a GPM result file. |
*[[Technical Overview, ppath.pl]]: to view proteins in a GPM result file in their KEGG pathways. | *[[Technical Overview, ppath.pl]]: to view proteins in a GPM result file in their KEGG pathways. | ||
*[[Technical Overview, protein.pl]]: to view all identifications of a protein. | *[[Technical Overview, protein.pl]]: to view all identifications of a protein. | ||
- | *[[Technical Overview, | + | *[[Technical Overview, ptissue.pl]]: to view proteins in a GPM result file in terms of BTO relationships. |
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=== peakdb === | === peakdb === |
This page will serve as an index to the explanation pages for the entities that make up the GPM.
Contents |