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*[[Technical Overview, aa table]]: the table of amino acid modifications and mutations. | *[[Technical Overview, aa table]]: the table of amino acid modifications and mutations. | ||
*[[Technical Overview, best_expect table]]: the table of the lowest (best) expect score and identification count for each protein. | *[[Technical Overview, best_expect table]]: the table of the lowest (best) expect score and identification count for each protein. | ||
- | *[[Technical Overview, | + | *[[Technical Overview, peptide_index table]]: the table that drives tag searches of peptide sequences. |
*[[Technical Overview, paths table]]: the table of GPM file archive locations. | *[[Technical Overview, paths table]]: the table of GPM file archive locations. | ||
*[[Technical Overview, peptide_mut table]]: the table of peptides with known point mutations. | *[[Technical Overview, peptide_mut table]]: the table of peptides with known point mutations. | ||
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*[[Technical Overview, dblist_pep_modmass.pl]]: to search for protein identifications with specific residue modifications. | *[[Technical Overview, dblist_pep_modmass.pl]]: to search for protein identifications with specific residue modifications. | ||
*[[Technical Overview, dblist_protein_mut.pl]]: to view peptides with known SNAPs. | *[[Technical Overview, dblist_protein_mut.pl]]: to view peptides with known SNAPs. | ||
+ | *[[Technical Overview, dblist_pep_summary.pl]]: to view information on several peptides at a time. | ||
+ | *[[Technical Overview, dblist_v.pl]]: to view consensus peptide coverage information for a protein. | ||
*[[Technical Overview, pepdelta.pl]]: to view displays about the parent ions identified in a GPM result file. | *[[Technical Overview, pepdelta.pl]]: to view displays about the parent ions identified in a GPM result file. | ||
*[[Technical Overview, peptide.pl]]: to view a calculated spectrum of a specific peptide in a GPM result file. | *[[Technical Overview, peptide.pl]]: to view a calculated spectrum of a specific peptide in a GPM result file. |
This page will serve as an index to the explanation pages for the entities that make up the GPM.
Contents |