(New page: This searches the GPM for instances of specific peptide sequences, and displays some summary information about them. The one required argument is ''peptides'', which is a delimited set of...) |
m (Protected "Technical Overview, dblist pep summary.pl" ([edit=sysop] (indefinite) [move=sysop] (indefinite))) |
This searches the GPM for instances of specific peptide sequences, and displays some summary information about them.
The one required argument is peptides, which is a delimited set of peptide sequences. Before querying, any duplicate sequences will be removed.
Three optional arguments are sort, format and filter_labels. sort is the sort order of the # Obs column, which defaults to descending order, placing the peptide with the highest number of identifications at the top. format controls if the output of the list should be HTML for viewing online, or 'excel', for opening in a spreadsheet program.
This script uses the following tables: in GPMDB, peptide_index, proseq, protein, peptide.