This page will serve as an index to the explanation pages for the entities that make up the GPM.
Database Updates
Database Tables
- Technical Overview, table relationships: how the tables of GPMDB work together.
- Technical Overview, result table: the table of GPM result files.
- Technical Overview, protein table: the table of identified proteins.
- Technical Overview, peptide table: the table of identified peptides.
- Technical Overview, aa table: the table of amino acid modifications and mutations.
- Technical Overview, best_expect table: the table of the lowest (best) expect score and identification count for each protein.
- Technical Overview, peptide_word_index table: the table that drives tag searches of peptide sequences.
- Technical Overview, paths table: the table of GPM file archive locations.
- Technical Overview, peptide_mut table: the table of peptides with known point mutations.
- Technical Overview, project table: the project table.
- Technical Overview, proseq table: the table of protein sequences dictated by RNA.
Software