(New page: This script searches the GPMDB for the twenty most reliably identified proteins in a specific result file. The one required argument is ''gpmnum'', a GPMDB result file identifier of the f...) |
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*a dropdown menu to change the label display type. | *a dropdown menu to change the label display type. | ||
*the per-protein lines of information. | *the per-protein lines of information. | ||
+ | |||
+ | The links to result file level information are: | ||
+ | *'''model''', a link to [[Technical Overview, plist.pl|plist.pl]]. | ||
+ | *'''gel''', a link to [[Technical Overview, pgel.pl|pgel.pl]]. | ||
+ | *'''peptide''', a link to [[Technical Overview, phplctab.pl|phplctab.pl]]. | ||
+ | *'''GO''', a link to [[Technical Overview, pgo.pl|pgo.pl]]. | ||
+ | *'''BTO''', a link to [[Technical Overview, ptissue.pl|ptissue.pl]]. | ||
+ | *'''path''', a link to [[Technical Overview, ppath.pl|ppath.pl]]. | ||
+ | *'''wiki''', a link to the [http://wiki.thegpm.org/wiki/Main_Page GPM Wiki] entry for this GPMDB result file, which may not yet exist. | ||
The per-protein pieces of information are: | The per-protein pieces of information are: |
This script searches the GPMDB for the twenty most reliably identified proteins in a specific result file.
The one required argument is gpmnum, a GPMDB result file identifier of the form "GPMxxxNNNNNNNN", where "xxx" is one of the three-digit identifiers of the search machines that form a part of the GPM, and the "NNNNNNNN" is a sequentially assigned number unique within the "xxx" machine. Two optional arguments are proex and ltype. If proex is not supplied, it defaults to -1, and is used solely in forming the links that lead to protein-level information for identifications in this file. If the ltype argument is not supplied, it defaults to 2; this value is both passed on through links to protein-level information pages, but also controls the display of the label elements; choices that can be made are "ensembl", "ipi", "symbol" (the default), "ncbi" and "swiss".
The links to result file level information are:
The per-protein pieces of information are:
This script uses the following tables: result, protein, peptide, proseq, paths.